Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MRPL20	55052	genome.wustl.edu	37	1	1342349	1342349	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017971.3	-1	reviewed	p.V46	0.684	46	0%	95	10.5%	318	11%	-	-	-	HMMPfam_Ribosomal_L20
ATAD3C	219293	genome.wustl.edu	37	1	1386072	1386072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039211.2	+1	validated	p.K3N	1.000	7	0.000	16	0.375	0	-	unknown(0)	deleterious(0)	-	NULL
ATAD3B	83858	genome.wustl.edu	37	1	1417923	1417923	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031921.4	+1	provisional	e7-2	1.000	48	0%	113	51.3%	2	100%	-	-	-	-
KIAA1751	85452	genome.wustl.edu	37	1	1900252	1900252	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080484.1	-1	predicted	p.K356T	0.968	295	0%	217	43.8%	0	-	possibly_damaging(0.563)	tolerated(0.05)	deleterious(0.538)	NULL
PRKCZ	5590	genome.wustl.edu	37	1	2106744	2106744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002744.4	+1	reviewed	p.W523G	1.000	20	0%	28	64.3%	44	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TK_X,superfamily_Kinase_like
TPRG1L	127262	genome.wustl.edu	37	1	3545083	3545083	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182752.3	+1	validated	p.I245	0.992	18	0%	130	20%	44	13.6%	-	-	-	NULL
C1orf174	339448	genome.wustl.edu	37	1	3807506	3807506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207356.2	-1	validated	p.S82Y	0.016	75	0%	68	17.6%	51	7.8%	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
NPHP4	261734	genome.wustl.edu	37	1	5964828	5964828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015102.2	-1	reviewed	p.K664N	0.434	130	0%	39	30.8%	10	10%	benign(0.028)	tolerated(0.08)	neutral(0.301)	NULL
CHD5	26038	genome.wustl.edu	37	1	6189123	6189123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015557.1	-1	provisional	p.S1132G	1.000	20	0%	10	50%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
CHD5	26038	genome.wustl.edu	37	1	6196844	6196844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015557.1	-1	provisional	p.E840K	0.958	42	0%	61	55.7%	0	-	benign(0.055)	tolerated(0.77)	neutral(0.005)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
CHD5	26038	genome.wustl.edu	37	1	6204115	6204115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015557.1	-1	provisional	p.D635N	1.000	92	0%	76	38.2%	0	-	benign(0.002)	tolerated(0.38)	neutral(0.018)	HMMPfam_Chromo,HMMSmart_CHROMO,superfamily_SSF52540
CHD5	26038	genome.wustl.edu	37	1	6206805	6206805	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015557.1	-1	provisional	p.E504*	1.000	19	0%	18	27.8%	0	-	-	-	-	HMMSmart_CHROMO,superfamily_Chromodomain-like
RPL22	6146	genome.wustl.edu	37	1	6246855	6246855	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000983.3	-1	reviewed	p.K88N	1.000	49	0%	116	43.1%	1409	46.5%	possibly_damaging(0.866)	deleterious(0.01)	deleterious(0.741)	HMMPfam_Ribosomal_L22e
NOL9	79707	genome.wustl.edu	37	1	6592117	6592117	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024654.4	-1	validated	p.R520*	1.000	131	0%	144	45.8%	16	25%	-	-	-	HMMPfam_NUC156
ZBTB48	3104	genome.wustl.edu	37	1	6641117	6641117	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005341.2	+1	validated	p.E150*	0.295	20	0%	30	43.3%	3	33.3%	-	-	-	NULL
KLHL21	9903	genome.wustl.edu	37	1	6655538	6655538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000377663	-1	known	p.F503V	0.000	62	0%	75	52%	0	-	benign(0.012)	tolerated(0.54)	neutral(0.008)	NULL
PHF13	148479	genome.wustl.edu	37	1	6680292	6680292	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153812.2	+1	validated	p.E191*	1.000	11	0%	26	30.8%	13	7.6%	-	-	-	NULL
DNAJC11	55735	genome.wustl.edu	37	1	6727783	6727783	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018198.3	-1	validated	p.R122*	1.000	70	0%	46	47.8%	23	4.3%	-	-	-	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7796507	7796507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015215.1	+1	validated	p.L1057S	0.998	173	0%	71	16.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
PER3	8863	genome.wustl.edu	37	1	7848256	7848256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016831.1	+1	reviewed	p.A181V	0.002	61	0%	77	46.8%	5	80%	possibly_damaging(0.575)	deleterious(0.01)	deleterious(0.603)	HMMSmart_PAS
PER3	8863	genome.wustl.edu	37	1	7869050	7869050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016831.1	+1	reviewed	p.L411I	1.000	82	0%	145	49.7%	2	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
RERE	473	genome.wustl.edu	37	1	8422899	8422899	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042681.1	-1	reviewed	p.S582	0.998	154	0%	62	48.4%	58	46.5%	-	-	-	HMMPfam_Atrophin-1
CLSTN1	22883	genome.wustl.edu	37	1	9791424	9791424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009566.1	-1	validated	p.V863A	1.000	51	0%	30	43.3%	160	47.5%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
UBE4B	10277	genome.wustl.edu	37	1	10207095	10207095	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105562.1	+1	reviewed	p.F846L	0.992	191	0%	87	40.2%	14	42.8%	possibly_damaging(0.812)	deleterious(0.05)	deleterious(0.651)	HMMPfam_Ufd2P_core
KIF1B	23095	genome.wustl.edu	37	1	10316321	10316321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015074.3	+1	reviewed	p.K41N	1.000	142	0%	109	48.6%	6	83.3%	benign(0.38)	deleterious(0.01)	deleterious(0.527)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
PEX14	5195	genome.wustl.edu	37	1	10683165	10683165	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004565.2	+1	reviewed	p.S158	0.994	37	0%	37	48.6%	36	38.8%	-	-	-	NULL
EXOSC10	5394	genome.wustl.edu	37	1	11158150	11158150	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001998.1	-1	validated	p.E59*	1.000	68	0%	76	42.1%	28	17.8%	-	-	-	HMMPfam_PMC2NT
MTOR	2475	genome.wustl.edu	37	1	11187156	11187156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004958.3	-1	reviewed	p.Y2088D	1.000	121	0%	136	41.9%	43	55.8%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_ARM-type_fold
MTOR	2475	genome.wustl.edu	37	1	11190804	11190804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004958.3	-1	reviewed	p.E1799K	1.000	262	0%	130	45.4%	29	55.1%	possibly_damaging(0.722)	tolerated(0.17)	neutral(0.321)	HMMPfam_FAT,superfamily_ARM-type_fold
MTOR	2475	genome.wustl.edu	37	1	11291090	11291090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004958.3	-1	reviewed	p.L891V	0.053	175	0%	86	33.7%	8	37.5%	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	superfamily_ARM-type_fold
C1orf187	374946	genome.wustl.edu	37	1	11772411	11772411	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198545.3	+1	validated	p.K258Q	0.002	46	0%	53	45.3%	4	0%	benign(0.305)	tolerated(0.33)	neutral(0.119)	NULL
AGTRAP	57085	genome.wustl.edu	37	1	11807588	11807588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020350.4	+1	reviewed	p.D52Y	0.996	39	0%	42	26.2%	67	19.4%	possibly_damaging(0.818)	-	-	HMMPfam_AGTRAP,HMMSmart_SM00805
MFN2	9927	genome.wustl.edu	37	1	12064141	12064141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127660.1	+1	reviewed	p.R418Q	0.749	52	0%	73	50.7%	39	38.4%	benign(0.418)	tolerated(0.19)	neutral(0.185)	NULL
TNFRSF8	943	genome.wustl.edu	37	1	12175704	12175704	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001243.3	+1	reviewed	p.I288	0.782	153	0%	45	53.3%	0	-	-	-	-	superfamily_TNF receptor-like
VPS13D	55187	genome.wustl.edu	37	1	12379674	12379674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015378.2	+1	reviewed	p.L2512S	1.000	390	0%	189	41.3%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12416479	12416479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015378.2	+1	reviewed	p.D3299G	1.000	122	0%	43	27.9%	2	0%	probably_damaging(0.972)	deleterious(0.02)	deleterious(0.797)	HMMPfam_DUF1162
AADACL3	126767	genome.wustl.edu	37	1	12785381	12785381	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103170.1	+1	validated	p.R157	0.005	233	0%	52	48.1%	0	-	-	-	-	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
C1orf158	93190	genome.wustl.edu	37	1	12820784	12820784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152290.2	+1	validated	p.Y162S	0.063	254	0%	64	56.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PRAMEF1	65121	genome.wustl.edu	37	1	12856004	12856004	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023013.1	+1	provisional	p.E428	0.000	322	0%	145	27.6%	0	-	-	-	-	superfamily_SSF52047
HNRNPCL1	343069	genome.wustl.edu	37	1	12907556	12907556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013631.1	-1	validated	p.S196Y	1.000	169	0%	133	68.4%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
PRAMEF10	343071	genome.wustl.edu	37	1	12952872	12952872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039361.3	-1	validated	p.R434W	0.000	82	0%	33	63.6%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	superfamily_SSF52047
LOC440563	440563	genome.wustl.edu	37	1	13183412	13183412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136561.2	-1	validated	p.R154Q	0.988	404	0.5%	333	14.7%	0	-	-	-	-	NULL
LOC440563	440563	genome.wustl.edu	37	1	13183444	13183444	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136561.2	-1	validated	p.S143	0.996	394	0%	279	28.3%	0	-	-	-	-	NULL
LOC645359	645359	genome.wustl.edu	37	1	13219364	13219364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_928401.3	-1	model	p.L88I	0.001	211	0%	159	16.4%	0	-	benign(0.116)	tolerated(0.07)	neutral(0.328)	superfamily_RNI-like
PRDM2	7799	genome.wustl.edu	37	1	14105945	14105945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012231.4	+1	reviewed	p.D552A	1.000	195	0%	77	49.4%	6	83.3%	unknown(0)	deleterious(0.01)	-	NULL
PRDM2	7799	genome.wustl.edu	37	1	14107922	14107922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012231.4	+1	reviewed	p.R1211Q	1.000	65	0%	97	45.4%	22	40.9%	possibly_damaging(0.923)	tolerated(0.25)	neutral(0.409)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DNAJC16	23341	genome.wustl.edu	37	1	15860735	15860735	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015291.2	+1	provisional	p.H57	1.000	86	0%	84	34.5%	3	66.6%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
SPEN	23013	genome.wustl.edu	37	1	16256831	16256831	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015001.2	+1	reviewed	p.R1366*	0.990	66	0%	63	46%	12	66.6%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16257036	16257036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015001.2	+1	reviewed	p.F1434S	1.000	99	0%	96	40.6%	14	57.1%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
ARHGEF19	128272	genome.wustl.edu	37	1	16525126	16525126	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153213.3	-1	provisional	p.R789*	1.000	218	0%	31	41.9%	66	62.1%	-	-	-	NULL
LOC100287973	100287973	genome.wustl.edu	37	1	16559457	16559457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342034.1	+1	model	p.D189N	0.143	50	0%	43	53.5%	0	-	-	-	-	NULL
SPATA21	374955	genome.wustl.edu	37	1	16757803	16757803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000375577	-1	known	p.S22R	0.001	248	0.4%	67	44.8%	0	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
MST1P9	11223	genome.wustl.edu	37	1	17085633	17085633	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_002729.2	-1	validated	NULL	0.999	47	0%	28	17.9%	2	0%	benign(0.27)	deleterious(0.04)	neutral(0.378)	-
PADI2	11240	genome.wustl.edu	37	1	17395570	17395570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007365.2	-1	reviewed	p.F656S	0.998	87	0%	26	30.8%	2	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PAD,superfamily_SSF55909
PADI2	11240	genome.wustl.edu	37	1	17395616	17395616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007365.2	-1	reviewed	p.F641V	0.181	105	0%	31	48.4%	0	-	benign(0.023)	tolerated(0.5)	neutral(0.011)	HMMPfam_PAD,superfamily_SSF55909
PADI1	29943	genome.wustl.edu	37	1	17556607	17556607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013358.2	+1	reviewed	p.E319D	0.001	95	0%	54	51.9%	0	-	benign(0.001)	tolerated(0.63)	neutral(0.004)	HMMPfam_PAD,superfamily_Pentein
PADI4	23569	genome.wustl.edu	37	1	17690124	17690124	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012387.2	+1	reviewed	p.P622	0.832	83	0%	22	54.5%	0	-	-	-	-	HMMPfam_PAD,superfamily_Pentein
KLHDC7A	127707	genome.wustl.edu	37	1	18808328	18808328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152375.2	+1	validated	p.L285I	0.903	48	0%	29	37.9%	3	66.6%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
PAX7	5081	genome.wustl.edu	37	1	19018437	19018437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002584.2	+1	reviewed	p.A259V	1.000	23	0%	19	52.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
PAX7	5081	genome.wustl.edu	37	1	19071366	19071366	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135254.1	+1	reviewed	p.L487	0.019	71	0%	32	40.6%	0	-	-	-	-	NULL
KIAA0090	23065	genome.wustl.edu	37	1	19561642	19561642	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015047.1	-1	predicted	p.E472*	1.000	167	0%	86	43%	28	7.1%	-	-	-	superfamily_Quinoprotein alcohol dehydrogenase-like
OTUD3	23252	genome.wustl.edu	37	1	20216981	20216981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015207.1	+1	validated	p.D109Y	1.000	286	0%	97	45.4%	3	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_OTU,superfamily_SSF54001
PLA2G2F	64600	genome.wustl.edu	37	1	20474813	20474813	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022819.3	+1	validated	p.T185	0.511	55	0%	40	40%	0	-	-	-	-	HMMPfam_Phospholip_A2_1,superfamily_PhospholipaseA2
VWA5B1	127731	genome.wustl.edu	37	1	20649862	20649862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039500.2	+1	validated	p.R327Q	1.000	223	0%	62	50%	0	-	probably_damaging(0.983)	tolerated(0.59)	neutral(0.433)	NULL
KIF17	57576	genome.wustl.edu	37	1	21009301	21009301	+	Missense_Mutation	SNP	G	G	A	rs186978787	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020816.2	-1	validated	p.R770C	1.000	149	0%	37	43.2%	0	-	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21137325	21137325	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003760.3	-1	validated	p.P1494	1.000	81	0%	130	50%	34	20.5%	-	-	-	HMMSmart_SM00515,superfamily_ARM repeat
EIF4G3	8672	genome.wustl.edu	37	1	21212819	21212819	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003760.3	-1	validated	p.E711*	1.000	812	0%	188	47.3%	15	20%	-	-	-	NULL
USP48	84196	genome.wustl.edu	37	1	22074707	22074708	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032236.5	-1	reviewed	p.N278fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
HSPG2	3339	genome.wustl.edu	37	1	22188281	22188281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000374695	-1	known	p.E1642K	0.999	48	0%	100	48%	20	40%	possibly_damaging(0.676)	tolerated(0.37)	neutral(0.260)	HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
EPHA8	2046	genome.wustl.edu	37	1	22903272	22903272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020526.3	+1	reviewed	p.D241G	1.000	23	0%	19	52.6%	0	-	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	NULL
C1QC	714	genome.wustl.edu	37	1	22974153	22974153	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114101.1	+1	reviewed	p.G205	0.931	243	0%	33	39.4%	137	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
EPHB2	2048	genome.wustl.edu	37	1	23239962	23239962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004442.6	+1	reviewed	p.L955I	1.000	142	0%	88	42%	18	22.2%	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
LYPLA2	11313	genome.wustl.edu	37	1	24120404	24120404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007260.2	+1	reviewed	p.K93N	1.000	198	0%	87	48.3%	91	39.5%	probably_damaging(0.994)	tolerated(0.17)	deleterious(0.511)	HMMPfam_Abhydrolase_2,superfamily_SSF53474
MYOM3	127294	genome.wustl.edu	37	1	24408492	24408492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152372.3	-1	validated	p.K760T	1.000	22	0%	13	61.5%	0	-	benign(0.016)	tolerated(0.53)	neutral(0.008)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
IL28RA	163702	genome.wustl.edu	37	1	24495963	24495963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170743.2	-1	reviewed	p.S104Y	0.002	78	0%	31	48.4%	12	66.6%	probably_damaging(0.997)	tolerated(0.25)	deleterious(0.503)	superfamily_Fibronectin type III
GRHL3	57822	genome.wustl.edu	37	1	24661146	24661146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021180.2	+1	reviewed	p.E77D	1.000	169	0%	116	47.4%	0	-	probably_damaging(0.99)	tolerated(0.4)	neutral(0.458)	NULL
GRHL3	57822	genome.wustl.edu	37	1	24673129	24673129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021180.2	+1	reviewed	p.R519I	1.000	24	0%	40	45%	2	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
C1orf201	90529	genome.wustl.edu	37	1	24685054	24685054	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000437986	-1	known	p.E254*	0.255	165	0%	125	50.4%	10	60%	-	-	-	NULL
C1orf201	90529	genome.wustl.edu	37	1	24696262	24696262	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178122.3	-1	predicted	p.S166	0.808	160	0%	158	34.8%	3	66.6%	-	-	-	NULL
RHD	6007	genome.wustl.edu	37	1	25655432	25655432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000342055	+1	known	p.E429D	0.006	595	0%	460	60.2%	0	-	benign(0.105)	deleterious(0.03)	neutral(0.372)	NULL
SEPN1	57190	genome.wustl.edu	37	1	26142120	26142120	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000354177	+1	known	p.S528A	1.000	72	0%	55	36.4%	105	52.3%	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	NULL
FAM54B	56181	genome.wustl.edu	37	1	26156166	26156166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099627.1	+1	validated	p.F170C	1.000	252	0%	193	45.1%	82	31.7%	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	HMMPfam_DUF729
PAFAH2	5051	genome.wustl.edu	37	1	26314780	26314781	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000437.3	-1	reviewed	p.K94fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases
EXTL1	2134	genome.wustl.edu	37	1	26361433	26361433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004455.2	+1	reviewed	p.V596I	0.998	86	0%	88	45.5%	0	-	possibly_damaging(0.929)	tolerated(0.07)	deleterious(0.695)	HMMPfam_Glyco_transf_64,superfamily_SSF53448
PDIK1L	149420	genome.wustl.edu	37	1	26441068	26441068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152835.3	+1	validated	p.S90Y	1.000	80	0%	174	46.6%	2	0%	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CEP85	64793	genome.wustl.edu	37	1	26595031	26595031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022778.2	+1	provisional	p.E467K	0.998	78	0%	35	54.3%	17	64.7%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
AIM1L	55057	genome.wustl.edu	37	1	26658088	26658088	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000308182	-1	known	p.R467Q	0.186	48	0%	48	52.1%	3	100%	-	-	-	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
ARID1A	8289	genome.wustl.edu	37	1	27093048	27093049	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006015.4	+1	reviewed	p.S994fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27100163	27100163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006015.4	+1	reviewed	p.S1320Y	1.000	177	0.6%	85	43.5%	20	65%	possibly_damaging(0.922)	tolerated(0.36)	neutral(0.392)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27106792	27106792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006015.4	+1	reviewed	p.I2135V	1.000	148	0%	52	46.2%	55	74.5%	possibly_damaging(0.93)	tolerated(0.38)	neutral(0.394)	NULL
SLC9A1	6548	genome.wustl.edu	37	1	27480517	27480517	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003047.3	-1	validated	p.F103	0.954	40	0%	19	57.9%	20	30%	-	-	-	NULL
SYTL1	84958	genome.wustl.edu	37	1	27676743	27676743	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000485269	+1	known	p.R11*	0.001	10	0%	20	35%	0	-	-	-	-	NULL
WASF2	10163	genome.wustl.edu	37	1	27745585	27745585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006990.2	-1	reviewed	p.K45N	1.000	127	0%	65	38.5%	17	52.9%	unknown(0)	deleterious(0)	-	NULL
TRNAU1AP	54952	genome.wustl.edu	37	1	28897727	28897727	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017846.4	+1	validated	p.S190R	1.000	172	0%	190	45.3%	50	50%	probably_damaging(0.984)	tolerated(0.2)	deleterious(0.479)	superfamily_RNA-binding domain RBD
EPB41	2035	genome.wustl.edu	37	1	29344857	29344857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203343.2	+1	reviewed	p.E308*	1.000	133	0%	100	51%	6	0%	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
SDC3	9672	genome.wustl.edu	37	1	31346193	31346193	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014654.3	-1	reviewed	p.L398	0.998	113	0%	52	44.2%	50	42%	-	-	-	HMMPfam_Syndecan
PUM1	9698	genome.wustl.edu	37	1	31418210	31418210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001020658.1	-1	reviewed	p.D993N	1.000	135	0%	79	46.8%	60	46.6%	benign(0.151)	tolerated(0.12)	neutral(0.274)	HMMSmart_SM00025,superfamily_ARM repeat
PUM1	9698	genome.wustl.edu	37	1	31426818	31426818	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001020658.1	-1	reviewed	p.T778	0.856	81	0%	26	50%	37	51.3%	-	-	-	NULL
SNRNP40	9410	genome.wustl.edu	37	1	31754246	31754246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004814.2	-1	reviewed	p.S210Y	1.000	378	0.5%	161	43.5%	75	46.6%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
PEF1	553115	genome.wustl.edu	37	1	32096373	32096373	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012392.3	-1	reviewed	p.R232	0.999	128	0%	41	41.5%	98	39.7%	-	-	-	superfamily_SSF47473
PEF1	553115	genome.wustl.edu	37	1	32101056	32101056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012392.3	-1	reviewed	p.N31T	0.614	12	0.000	8	0.625	28	60.7%	unknown(0)	deleterious(0.02)	-	NULL
COL16A1	1307	genome.wustl.edu	37	1	32127273	32127273	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001856.3	-1	reviewed	p.L1238	1.000	62	0%	42	14.3%	31	6.4%	-	-	-	HMMPfam_Collagen
COL16A1	1307	genome.wustl.edu	37	1	32148578	32148578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001856.3	-1	reviewed	p.T832I	0.001	47	0%	41	34.1%	10	10%	possibly_damaging(0.922)	tolerated(0.24)	neutral(0.409)	HMMPfam_Collagen
COL16A1	1307	genome.wustl.edu	37	1	32150144	32150144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001856.3	-1	reviewed	p.A714T	0.000	21	0%	11	45.5%	11	9%	unknown(0)	tolerated(0.23)	-	HMMPfam_Collagen
TMEM39B	55116	genome.wustl.edu	37	1	32568173	32568173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018056.2	+1	validated	p.Y460D	1.000	209	0%	78	53.8%	32	53.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Tmp39
HDAC1	3065	genome.wustl.edu	37	1	32797379	32797379	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004964.2	+1	reviewed	p.D397	0.424	52	0%	44	45.5%	202	49%	-	-	-	NULL
MARCKSL1	65108	genome.wustl.edu	37	1	32800510	32800510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023009.5	-1	validated	p.F92L	1.000	14	0%	26	50%	715	44.1%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	PatternScan_MARCKS_2
ZBTB8A	653121	genome.wustl.edu	37	1	33058578	33058578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040441.1	+1	validated	p.E16K	1.000	164	0%	84	51.2%	8	37.5%	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	superfamily_POZ domain,HMMPfam_BTB
SYNC	81493	genome.wustl.edu	37	1	33161087	33161087	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030786.2	-1	reviewed	p.R204	0.983	120	0%	40	42.5%	1	0%	-	-	-	NULL
FNDC5	252995	genome.wustl.edu	37	1	33330351	33330351	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153756.2	-1	validated	p.E108*	1.000	241	0%	246	44.3%	0	-	-	-	-	NULL
AK2	204	genome.wustl.edu	37	1	33487015	33487015	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001625.2	-1	reviewed	p.I126	0.995	110	0%	55	63.6%	172	43.6%	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADC	113451	genome.wustl.edu	37	1	33585676	33585676	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052998.2	+1	validated	p.E426*	0.983	249	0%	26	30.8%	4	25%	-	-	-	NULL
PHC2	1912	genome.wustl.edu	37	1	33790580	33790580	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198040.2	-1	reviewed	p.I821	0.754	59	0%	27	66.7%	140	33.5%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
ZSCAN20	7579	genome.wustl.edu	37	1	33959168	33959168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145238.3	+1	validated	p.E609A	0.098	48	0%	22	50%	2	100%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34015852	34015852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052896.3	-1	validated	p.R2804C	1.000	57	0%	15	33.3%	1	100%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34080145	34080145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052896.3	-1	validated	p.N1991S	1.000	145	0%	46	45.7%	2	100%	benign(0.093)	tolerated(0.25)	neutral(0.044)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD2	114784	genome.wustl.edu	37	1	34204881	34204881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052896.3	-1	validated	p.F703S	1.000	83	0%	16	62.5%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34312529	34312529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052896.3	-1	validated	p.S290L	0.982	142	0.7%	17	41.2%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
C1orf94	84970	genome.wustl.edu	37	1	34662856	34662856	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134734.1	+1	validated	p.E117	1.000	114	0%	37	18.9%	0	-	-	-	-	NULL
GJB4	127534	genome.wustl.edu	37	1	35226963	35226963	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153212.2	+1	reviewed	p.Y36	0.937	428	0%	86	45.3%	0	-	-	-	-	HMMPfam_Connexin
C1orf212	113444	genome.wustl.edu	37	1	35320729	35320729	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138428.5	-1	validated	p.E185*	0.975	90	0%	66	42.4%	33	24.2%	-	-	-	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35452992	35452992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007167.3	-1	validated	p.E1231K	0.950	41	0%	176	47.7%	7	14.2%	probably_damaging(0.971)	tolerated(0.08)	deleterious(0.713)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35453698	35453698	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007167.3	-1	validated	p.A995	1.000	14	0%	38	31.6%	9	55.5%	-	-	-	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35453862	35453862	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007167.3	-1	validated	p.E941*	1.000	10	0%	29	44.8%	10	20%	-	-	-	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35480424	35480424	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007167.3	-1	validated	p.K223N	1.000	132	0%	128	42.2%	9	11.1%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_zf-FCS,HMMSmart_SM00746
ZMYM6	9204	genome.wustl.edu	37	1	35480657	35480657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007167.3	-1	validated	p.K179Q	1.000	149	0%	159	48.4%	4	50%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35579468	35579468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024772.3	+1	validated	p.F679L	0.229	53	0%	89	41.6%	2	100%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35580111	35580111	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024772.3	+1	validated	p.E894*	1.000	30	0%	68	50%	3	33.3%	-	-	-	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35857939	35857939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005095.2	+1	validated	p.N905T	1.000	154	0%	46	41.3%	40	57.5%	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
CLSPN	63967	genome.wustl.edu	37	1	36226115	36226115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022111.2	-1	reviewed	p.E469D	0.000	274	0%	205	43.4%	9	55.5%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
EIF2C1	26523	genome.wustl.edu	37	1	36383221	36383221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012199.2	+1	reviewed	p.R686C	1.000	207	0%	163	48.5%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
EIF2C3	192669	genome.wustl.edu	37	1	36492725	36492725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024852.2	+1	reviewed	p.D473N	1.000	59	0%	49	22.4%	5	40%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
THRAP3	9967	genome.wustl.edu	37	1	36752028	36752028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005119.3	+1	validated	p.R66I	1.000	109	0%	97	49.5%	48	37.5%	unknown(0)	deleterious(0)	-	NULL
STK40	83931	genome.wustl.edu	37	1	36826860	36826860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032017.1	-1	provisional	p.S25Y	1.000	128	0%	126	42.9%	17	35.2%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	superfamily_Protein kinase-like (PK-like)
CSF3R	1441	genome.wustl.edu	37	1	36933760	36933760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_156039.2	-1	reviewed	p.W547R	1.000	88	0%	36	44.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CSF3R	1441	genome.wustl.edu	37	1	36941116	36941116	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_156039.2	-1	reviewed	p.Q75*	0.896	99	0%	27	59.3%	0	-	-	-	-	superfamily_FN_III-like,HMMPfam_Lep_receptor_Ig
GRIK3	2899	genome.wustl.edu	37	1	37270653	37270653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000831.3	-1	reviewed	p.L834F	1.000	61	0%	18	44.4%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_Lig_chan,superfamily_SSF55620
GNL2	29889	genome.wustl.edu	37	1	38034657	38034657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013285.2	-1	validated	p.L555I	0.000	231	0%	160	44.4%	115	46.9%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
C1orf109	54955	genome.wustl.edu	37	1	38155527	38155527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017850.1	-1	predicted	p.A9V	0.065	15	0%	15	60%	23	78.2%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
MTF1	4520	genome.wustl.edu	37	1	38283132	38283132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005955.2	-1	reviewed	p.K597T	1.000	49	0%	133	45.1%	4	100%	benign(0.43)	deleterious(0)	deleterious(0.585)	NULL
GJA9	81025	genome.wustl.edu	37	1	39340608	39340608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030772.3	-1	provisional	p.R388H	0.000	195	0%	376	48.9%	0	-	possibly_damaging(0.782)	deleterious(0)	deleterious(0.738)	NULL
GJA9	81025	genome.wustl.edu	37	1	39340657	39340657	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030772.3	-1	provisional	p.E372*	0.347	206	0%	426	43.2%	0	-	-	-	-	NULL
GJA9	81025	genome.wustl.edu	37	1	39341445	39341445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030772.3	-1	provisional	p.R109M	0.997	194	0%	190	42.6%	0	-	benign(0.048)	deleterious(0.01)	neutral(0.409)	HMMPfam_Connexin
MACF1	23499	genome.wustl.edu	37	1	39798420	39798420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033044.2	+1	reviewed	p.R494W	0.001	71	0%	40	45%	0	-	probably_damaging(0.968)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39798705	39798705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033044.2	+1	reviewed	p.D589Y	0.000	62	0%	32	46.9%	0	-	benign(0.293)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39818720	39818720	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000372925	+1	known	p.R819*	0.837	137	0%	46	43.5%	8	50%	-	-	-	NULL
KIAA0754	643314	genome.wustl.edu	37	1	39876571	39876571	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015038.1	+1	predicted	p.L212V	0.043	30	0%	51	41.2%	4	50%	unknown(0)	deleterious(0)	-	NULL
KIAA0754	643314	genome.wustl.edu	37	1	39877519	39877519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015038.1	+1	predicted	p.A528T	0.000	124	0%	181	49.2%	2	0%	unknown(0)	tolerated(0.18)	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39906724	39906724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033044.2	+1	reviewed	p.R4609L	1.000	234	0%	157	44.6%	31	29%	possibly_damaging(0.815)	tolerated(0.12)	deleterious(0.568)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
NT5C1A	84618	genome.wustl.edu	37	1	40131263	40131263	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032526.1	-1	provisional	p.F121	0.456	17	0%	73	46.6%	0	-	-	-	-	HMMPfam_5-nucleotidase
PPIE	10450	genome.wustl.edu	37	1	40208918	40208918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006112.2	+1	reviewed	p.R78C	1.000	455	0%	299	41.1%	45	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MYCL1	4610	genome.wustl.edu	37	1	40363391	40363391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033081.2	-1	validated	p.E250K	0.684	116	0%	157	42%	6	50%	benign(0.056)	tolerated(0.52)	neutral(0.012)	HMMPfam_Myc_N
RLF	6018	genome.wustl.edu	37	1	40706115	40706115	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012421.3	+1	validated	p.S1914*	1.000	36	0%	27	37%	51	41.1%	-	-	-	NULL
SMAP2	64744	genome.wustl.edu	37	1	40875448	40875448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022733.1	+1	provisional	p.R115*	1.000	364	0%	137	40.9%	11	0%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
ZNF643	65243	genome.wustl.edu	37	1	40928354	40928354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023070.2	+1	validated	p.N131T	0.000	83	0%	89	52.8%	1	100%	benign(0.138)	tolerated(0.5)	neutral(0.021)	NULL
ZNF643	65243	genome.wustl.edu	37	1	40929056	40929056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023070.2	+1	validated	p.R365K	0.997	241	0%	149	45.6%	7	57.1%	benign(0.007)	tolerated(0.16)	neutral(0.059)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF642	339559	genome.wustl.edu	37	1	40961190	40961190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198494.2	+1	validated	p.R347I	1.000	92	0%	112	46.4%	5	40%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF642	339559	genome.wustl.edu	37	1	40961561	40961561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198494.2	+1	validated	p.R471C	0.131	102	1%	117	35%	11	18.1%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KCNQ4	9132	genome.wustl.edu	37	1	41283841	41283841	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000509682	+1	known	p.R57C	1.000	48	2.1%	27	40.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNQ4	9132	genome.wustl.edu	37	1	41304040	41304040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004700.2	+1	reviewed	p.R645C	1.000	63	0%	20	45%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_KCNQ_channel
HIVEP3	59269	genome.wustl.edu	37	1	42048037	42048037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024503.3	-1	validated	p.S811Y	0.927	86	0%	47	57.4%	1	0%	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
RIMKLA	284716	genome.wustl.edu	37	1	42880638	42880638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173642.3	+1	validated	p.L390R	1.000	39	0%	21	52.4%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMYND12	84217	genome.wustl.edu	37	1	42914270	42914270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032257.4	-1	validated	p.Y98D	0.996	152	0%	52	36.5%	0	-	possibly_damaging(0.861)	tolerated(0.2)	neutral(0.382)	superfamily_TPR-like
CCDC30	728621	genome.wustl.edu	37	1	43108177	43108177	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080850.2	+1	validated	p.N558Y	0.996	86	0%	20	45%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ERMAP	114625	genome.wustl.edu	37	1	43308299	43308299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017922.1	+1	reviewed	p.R275I	1.000	353	0%	104	44.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PRY
ERMAP	114625	genome.wustl.edu	37	1	43308732	43308732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017922.1	+1	reviewed	p.E419D	0.111	334	0%	145	39.3%	4	50%	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	NULL
ZNF691	51058	genome.wustl.edu	37	1	43316921	43316921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015911.2	+1	provisional	p.N98D	1.000	132	0%	32	53.1%	7	0%	possibly_damaging(0.68)	tolerated(0.16)	neutral(0.302)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR65	149465	genome.wustl.edu	37	1	43647376	43647376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152498.3	+1	validated	p.F110C	0.996	158	0%	100	61%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_WD40_like
TMEM125	128218	genome.wustl.edu	37	1	43738659	43738659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144626.2	+1	validated	p.S89L	1.000	60	0%	16	62.5%	9	66.6%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
TIE1	7075	genome.wustl.edu	37	1	43783285	43783285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005424.2	+1	provisional	p.L891M	1.000	82	0%	103	52.4%	2	0%	possibly_damaging(0.873)	tolerated(0.36)	neutral(0.359)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
MPL	4352	genome.wustl.edu	37	1	43818313	43818313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005373.2	+1	reviewed	p.R593I	0.664	117	0%	86	40.7%	0	-	benign(0.011)	tolerated(0.1)	neutral(0.287)	NULL
SZT2	23334	genome.wustl.edu	37	1	43905575	43905575	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015284.2	+1	predicted	p.R1457*	1.000	132	0%	83	39.8%	4	50%	-	-	-	NULL
ATP6V0B	533	genome.wustl.edu	37	1	44442840	44442840	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004047.3	+1	reviewed	p.I181	1.000	50	0%	38	28.9%	358	44.4%	-	-	-	HMMPfam_ATP-synt_C,superfamily_F1F0 ATP synthase subunit C
KLF17	128209	genome.wustl.edu	37	1	44584589	44584589	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173484.3	+1	validated	p.R4*	0.000	24	0%	13	46.2%	0	-	-	-	-	NULL
KIF2C	11004	genome.wustl.edu	37	1	45226082	45226082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006845.3	+1	validated	p.A500T	0.997	60	0%	60	53.3%	57	50.8%	benign(0.353)	tolerated(0.06)	neutral(0.434)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
BTBD19	149478	genome.wustl.edu	37	1	45276069	45276069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136537.1	+1	provisional	p.T91A	1.000	51	0%	86	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
TESK2	10420	genome.wustl.edu	37	1	45923312	45923312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007170.2	-1	reviewed	p.A49D	1.000	303	0%	57	50.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
PIK3R3	8503	genome.wustl.edu	37	1	46521644	46521644	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114172.1	-1	validated	e7-1	1.000	133	0%	153	52.9%	0	-	-	-	-	-
RAD54L	8438	genome.wustl.edu	37	1	46726623	46726623	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142548.1	+1	reviewed	p.L234	0.990	141	0%	63	47.6%	13	53.8%	-	-	-	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
RAD54L	8438	genome.wustl.edu	37	1	46743910	46743910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142548.1	+1	reviewed	p.V734I	1.000	51	0%	44	36.4%	23	43.4%	benign(0.015)	tolerated(0.1)	neutral(0.287)	NULL
MOB3C	148932	genome.wustl.edu	37	1	47080746	47080746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145279.4	-1	reviewed	p.M1I	0.014	50	0%	76	44.7%	0	-	benign(0)	-	-	NULL
CYP4B1	1580	genome.wustl.edu	37	1	47278182	47278182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099772.1	+1	reviewed	p.V128I	0.978	138	0%	20	35%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4Z1	199974	genome.wustl.edu	37	1	47533219	47533219	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178134.2	+1	reviewed	p.L19	0.000	413	0%	57	42.1%	0	-	-	-	-	NULL
CYP4A22	284541	genome.wustl.edu	37	1	47610110	47610110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010969.2	+1	reviewed	p.F291C	1.000	378	0%	157	36.9%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_p450,superfamily_Cytochrome P450
STIL	6491	genome.wustl.edu	37	1	47746274	47746274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001048166.1	-1	reviewed	p.S619Y	0.992	178	0%	121	45.5%	5	80%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
SLC5A9	200010	genome.wustl.edu	37	1	48703352	48703352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135181.1	+1	validated	p.V457L	1.000	828	0.1%	80	50%	0	-	benign(0.001)	tolerated(0.94)	-	HMMPfam_SSF
AGBL4	84871	genome.wustl.edu	37	1	49100248	49100248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032785.3	-1	validated	p.R290C	1.000	256	0%	46	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
ELAVL4	1996	genome.wustl.edu	37	1	50661349	50661349	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144775.1	+1	validated	p.F226V	1.000	155	0%	27	48.1%	1	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	superfamily_SSF54928
FAF1	11124	genome.wustl.edu	37	1	51061888	51061888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007051.2	-1	reviewed	p.M249V	1.000	122	0%	69	34.8%	53	47.1%	benign(0.005)	tolerated(0.64)	neutral(0.003)	superfamily_Ubiquitin-like
C1orf185	284546	genome.wustl.edu	37	1	51613225	51613225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136508.1	+1	predicted	p.R128C	0.000	216	0%	81	50.6%	0	-	possibly_damaging(0.633)	tolerated(0.1)	deleterious(0.507)	NULL
TTC39A	22996	genome.wustl.edu	37	1	51761752	51761752	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144832.1	-1	validated	p.R386*	0.838	97	0%	38	39.5%	30	6.6%	-	-	-	HMMPfam_Deme6,superfamily_SSF48452
EPS15	2060	genome.wustl.edu	37	1	51827000	51827000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001981.2	-1	reviewed	p.S796Y	1.000	114	0%	164	37.8%	31	25.8%	unknown(0)	deleterious(0.01)	-	NULL
EPS15	2060	genome.wustl.edu	37	1	51829615	51829615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001981.2	-1	reviewed	p.S761L	0.036	241	0%	153	38.6%	38	52.6%	unknown(0)	deleterious(0.01)	-	NULL
OSBPL9	114883	genome.wustl.edu	37	1	52249953	52249953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148909.1	+1	reviewed	p.D558Y	1.000	666	0.2%	84	42.9%	55	45.4%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	HMMPfam_Oxysterol_BP
NRD1	4898	genome.wustl.edu	37	1	52303275	52303275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002525.2	-1	validated	p.F216L	1.000	91	1.1%	75	44%	11	63.6%	possibly_damaging(0.767)	deleterious(0)	deleterious(0.729)	superfamily_Metalloenz_metal-bd
TXNDC12	51060	genome.wustl.edu	37	1	52493007	52493007	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015913.2	-1	provisional	p.K75N	1.000	131	0%	165	40%	93	44%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Thioredoxin-like,PatternScan_THIOREDOXIN_1
ZFYVE9	9372	genome.wustl.edu	37	1	52769556	52769556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004799.2	+1	reviewed	p.R1133W	1.000	149	0%	192	49%	21	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52811874	52811874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004799.2	+1	reviewed	p.I1420S	1.000	147	0%	61	44.3%	28	32.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ORC1	4998	genome.wustl.edu	37	1	52859196	52859196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004153.2	-1	reviewed	p.R334I	0.000	557	0%	272	44.5%	17	35.2%	benign(0.08)	deleterious(0.02)	neutral(0.389)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52902605	52902605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009881.1	-1	validated	p.K1328N	0.993	551	0%	305	41.6%	36	66.6%	benign(0.256)	tolerated(0.11)	neutral(0.298)	superfamily_Retrovirus zinc finger-like domains
ZCCHC11	23318	genome.wustl.edu	37	1	52991321	52991321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009881.1	-1	validated	p.R211Q	0.000	178	0%	184	33.2%	14	35.7%	benign(0.011)	tolerated(0.39)	neutral(0.017)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52991748	52991748	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009881.1	-1	validated	p.E69*	1.000	115	0%	202	44.6%	4	50%	-	-	-	NULL
ZYG11A	440590	genome.wustl.edu	37	1	53333302	53333302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371528	+1	known	p.A495S	1.000	155	0%	286	40.6%	0	-	possibly_damaging(0.697)	deleterious(0.02)	deleterious(0.633)	superfamily_ARM repeat
SLC1A7	6512	genome.wustl.edu	37	1	53554581	53554581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006671.4	-1	validated	p.R478W	1.000	101	0%	27	40.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC1A7	6512	genome.wustl.edu	37	1	53580546	53580546	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006671.4	-1	validated	p.I105	0.478	61	0%	24	33.3%	0	-	-	-	-	HMMPfam_SDF
CPT2	1376	genome.wustl.edu	37	1	53679203	53679203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000098.2	+1	reviewed	p.Q638R	0.537	154	0%	91	38.5%	31	48.3%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
DIO1	1733	genome.wustl.edu	37	1	54360124	54360124	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039715.1	+1	reviewed	p.R81*	1.000	241	0%	49	55.1%	0	-	-	-	-	HMMPfam_T4_deiodinase
LDLRAD1	388633	genome.wustl.edu	37	1	54476055	54476055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010978.2	-1	provisional	p.F123L	1.000	55	0%	45	55.6%	0	-	possibly_damaging(0.882)	tolerated(0.1)	deleterious(0.631)	HMMSmart_SM00192
TMEM59	9528	genome.wustl.edu	37	1	54497946	54497946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004872.3	-1	provisional	p.M283I	1.000	142	0%	99	46.5%	301	37.5%	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
TMEM59	9528	genome.wustl.edu	37	1	54506445	54506445	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004872.3	-1	provisional	p.L231V	1.000	86	0%	94	52.1%	293	46.4%	benign(0.114)	deleterious(0.01)	neutral(0.415)	NULL
TCEANC2	127428	genome.wustl.edu	37	1	54520123	54520123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153035.1	+1	predicted	p.R10G	0.544	144	0%	85	40%	6	50%	possibly_damaging(0.906)	tolerated(0.08)	deleterious(0.659)	NULL
MRPL37	51253	genome.wustl.edu	37	1	54675706	54675706	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016491.3	+1	reviewed	p.I245S	0.997	291	0%	170	41.8%	195	52.3%	benign(0.128)	deleterious(0.02)	neutral(0.394)	NULL
SSBP3	23648	genome.wustl.edu	37	1	54694025	54694025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145716.2	-1	validated	p.S347Y	1.000	79	0%	137	40.9%	78	38.4%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
C8A	731	genome.wustl.edu	37	1	57372442	57372442	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000562.2	+1	reviewed	p.K400T	0.000	191	0%	123	45.5%	0	-	benign(0.005)	tolerated(0.51)	neutral(0.009)	HMMPfam_MACPF,HMMSmart_MACPF
MYSM1	114803	genome.wustl.edu	37	1	59125684	59125684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001085487.1	-1	provisional	p.K824N	0.000	221	0%	65	35.4%	4	50%	possibly_damaging(0.545)	deleterious(0)	deleterious(0.629)	NULL
FGGY	55277	genome.wustl.edu	37	1	59812049	59812049	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113411.1	+1	validated	p.P148	0.249	293	0%	26	30.8%	3	66.6%	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
TM2D1	83941	genome.wustl.edu	37	1	62166662	62166662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032027.2	-1	reviewed	p.S128Y	1.000	74	0%	94	39.4%	48	54.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TM2
INADL	10207	genome.wustl.edu	37	1	62545130	62545130	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176877.2	+1	reviewed	p.S1378	0.969	141	0%	104	51%	25	52%	-	-	-	NULL
INADL	10207	genome.wustl.edu	37	1	62579844	62579844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176877.2	+1	reviewed	p.E1527D	0.997	102	0%	73	34.2%	29	34.4%	benign(0.001)	tolerated(0.31)	neutral(0.027)	superfamily_PDZ domain-like
L1TD1	54596	genome.wustl.edu	37	1	62672774	62672774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019079.4	+1	validated	p.K158N	0.003	28	0%	64	53.1%	0	-	unknown(0)	deleterious(0)	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	62941524	62941524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033407.2	-1	validated	p.R1908C	1.000	271	0%	113	35.4%	36	72.2%	possibly_damaging(0.487)	deleterious(0)	deleterious(0.607)	HMMPfam_Ded_cyto
DOCK7	85440	genome.wustl.edu	37	1	62960061	62960061	+	Missense_Mutation	SNP	C	C	T	rs191312236	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033407.2	-1	validated	p.R1670Q	1.000	147	0%	26	57.7%	25	48%	probably_damaging(0.993)	tolerated(0.06)	deleterious(0.772)	NULL
DOCK7	85440	genome.wustl.edu	37	1	62962077	62962077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033407.2	-1	validated	p.S1588Y	1.000	243	0%	75	45.3%	19	63.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOCK7	85440	genome.wustl.edu	37	1	63021544	63021544	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000454575	-1	known	p.S21*	1.000	446	0%	169	42%	8	37.5%	benign(0.233)	tolerated(0.06)	neutral(0.346)	NULL
ATG4C	84938	genome.wustl.edu	37	1	63307175	63307175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032852.2	+1	reviewed	p.R389Q	1.000	33	0%	26	42.3%	8	25%	possibly_damaging(0.474)	tolerated(0.59)	neutral(0.161)	HMMPfam_Peptidase_C54
ATG4C	84938	genome.wustl.edu	37	1	63329785	63329785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032852.2	+1	reviewed	p.K444N	1.000	78	0%	66	53%	3	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
ITGB3BP	23421	genome.wustl.edu	37	1	63920057	63920057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014288.3	-1	provisional	p.E141*	0.996	182	0%	87	44.8%	22	13.6%	-	-	-	HMMPfam_NRIF3
JAK1	3716	genome.wustl.edu	37	1	65300295	65300295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002227.2	-1	reviewed	p.R1139W	0.477	268	0%	163	43.6%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
JAK1	3716	genome.wustl.edu	37	1	65304242	65304242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002227.2	-1	reviewed	p.F958C	1.000	311	0%	297	13.1%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
JAK1	3716	genome.wustl.edu	37	1	65332729	65332729	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002227.2	-1	reviewed	p.Y270*	1.000	407	0%	187	46%	8	0%	-	-	-	HMMSmart_B41
DNAJC6	9829	genome.wustl.edu	37	1	65831757	65831757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014787.2	+1	validated	p.D84Y	1.000	695	0.1%	110	48.2%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	superfamily_(Phosphotyrosine protein) phosphatases II
DNAJC6	9829	genome.wustl.edu	37	1	65845149	65845149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014787.2	+1	validated	p.R146Q	1.000	225	0%	70	42.9%	0	-	possibly_damaging(0.857)	tolerated(0.12)	deleterious(0.592)	superfamily_(Phosphotyrosine protein) phosphatases II
LEPR	3953	genome.wustl.edu	37	1	66074460	66074460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002303.4	+1	reviewed	p.V543A	0.901	59	0%	50	50%	2	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_SM00060,superfamily_Fibronectin type III
PDE4B	5142	genome.wustl.edu	37	1	66723166	66723166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371048	+1	known	p.G25V	0.000	30	0%	42	35.7%	0	-	-	-	-	NULL
PDE4B	5142	genome.wustl.edu	37	1	66828878	66828878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037341.1	+1	reviewed	p.L350I	0.970	146	0%	44	56.8%	2	0%	benign(0.027)	tolerated(0.4)	neutral(0.018)	superfamily_HD-domain/PDEase-like
WDR78	79819	genome.wustl.edu	37	1	67313332	67313332	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024763.4	-1	validated	p.E376*	1.000	220	0%	85	45.9%	0	-	-	-	-	NULL
WDR78	79819	genome.wustl.edu	37	1	67356907	67356907	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024763.4	-1	validated	p.S191	0.682	274	0%	140	37.9%	1	100%	-	-	-	NULL
MIER1	57708	genome.wustl.edu	37	1	67428776	67428776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020948.3	+1	validated	p.I206M	1.000	198	0%	167	44.9%	16	6.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ELM2
IL23R	149233	genome.wustl.edu	37	1	67702441	67702441	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144701.2	+1	reviewed	p.S334Y	0.002	178	0%	127	45.7%	0	-	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	NULL
WLS	79971	genome.wustl.edu	37	1	68614259	68614259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002292.2	-1	validated	p.D351Y	1.000	136	0%	38	21.1%	387	18.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1171
WLS	79971	genome.wustl.edu	37	1	68614334	68614334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002292.2	-1	validated	p.E326K	1.000	139	0%	43	55.8%	376	54.5%	possibly_damaging(0.719)	tolerated(0.2)	neutral(0.309)	HMMPfam_DUF1171
WLS	79971	genome.wustl.edu	37	1	68659873	68659873	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002292.2	-1	validated	p.V46	0.987	278	0%	71	35.2%	216	44.4%	-	-	-	NULL
DEPDC1	55635	genome.wustl.edu	37	1	68944639	68944639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000370964	-1	known	p.S767Y	0.006	31	0%	18	55.6%	0	-	-	-	-	NULL
DEPDC1	55635	genome.wustl.edu	37	1	68944921	68944921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114120.1	-1	validated	p.S673Y	1.000	245	0.4%	31	22.6%	13	46.1%	probably_damaging(0.975)	tolerated(1)	neutral(0.417)	superfamily_Rho_GAP
DEPDC1	55635	genome.wustl.edu	37	1	68948316	68948316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114120.1	-1	validated	p.A392V	0.058	189	0%	55	41.8%	15	53.3%	benign(0.001)	tolerated(0.31)	neutral(0.027)	superfamily_Rho_GAP
LRRC7	57554	genome.wustl.edu	37	1	70501808	70501808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020794.2	+1	validated	p.S629Y	1.000	110	0.9%	64	43.8%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
LRRC40	55631	genome.wustl.edu	37	1	70650521	70650521	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017768.4	-1	validated	p.E162*	1.000	223	0%	158	46.2%	8	0%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
CTH	1491	genome.wustl.edu	37	1	70881669	70881669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001902.4	+1	reviewed	p.T67A	1.000	167	0%	139	51.1%	2	100%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases
PTGER3	5733	genome.wustl.edu	37	1	71512571	71512571	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198718.1	-1	reviewed	p.F230	0.994	31	0%	19	78.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NEGR1	257194	genome.wustl.edu	37	1	72241878	72241878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173808.2	-1	validated	p.S171Y	1.000	131	0%	41	58.5%	0	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
LRRIQ3	127255	genome.wustl.edu	37	1	74506974	74506974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105659.1	-1	provisional	p.E547D	0.008	180	0%	83	51.8%	0	-	benign(0.012)	tolerated(0.34)	neutral(0.024)	NULL
LRRIQ3	127255	genome.wustl.edu	37	1	74507380	74507380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105659.1	-1	provisional	p.R412I	0.002	530	0%	110	50.9%	0	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
LRRIQ3	127255	genome.wustl.edu	37	1	74649194	74649194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105659.1	-1	provisional	p.N59D	1.000	63	0%	50	36%	1	0%	benign(0.347)	tolerated(0.48)	neutral(0.120)	superfamily_Outer arm dynein light chain 1
LRRIQ3	127255	genome.wustl.edu	37	1	74649284	74649284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105659.1	-1	provisional	p.D29Y	1.000	97	0%	65	60%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Outer arm dynein light chain 1
TNNI3K	51086	genome.wustl.edu	37	1	74701812	74701812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112808.1	+1	validated	p.S124A	1.000	177	0%	44	36.4%	0	-	possibly_damaging(0.937)	tolerated(1)	neutral(0.383)	NULL
ACADM	34	genome.wustl.edu	37	1	76215151	76215151	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127328.1	+1	reviewed	p.F256	1.000	206	1%	198	43.4%	46	54.3%	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
ASB17	127247	genome.wustl.edu	37	1	76384650	76384650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080868.2	-1	validated	p.N292T	1.000	291	0%	174	44.8%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_SOCS_box
PIGK	10026	genome.wustl.edu	37	1	77629586	77629586	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005482.2	-1	reviewed	p.E177*	1.000	195	0%	52	34.6%	11	0%	-	-	-	HMMPfam_Peptidase_C13
PIGK	10026	genome.wustl.edu	37	1	77634966	77634966	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005482.2	-1	reviewed	p.E118D	1.000	267	0%	119	42%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C13
AK5	26289	genome.wustl.edu	37	1	77987619	77987619	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174858.1	+1	reviewed	p.F473	0.970	89	0%	31	41.9%	4	25%	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM73A	374986	genome.wustl.edu	37	1	78324724	78324724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198549.2	+1	predicted	p.I366M	1.000	135	0%	89	34.8%	0	-	benign(0.238)	deleterious(0)	deleterious(0.469)	HMMPfam_DUF2217
NEXN	91624	genome.wustl.edu	37	1	78392148	78392148	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144573.3	+1	reviewed	p.K180T	0.152	78	0%	99	53.5%	0	-	possibly_damaging(0.89)	tolerated(0.07)	deleterious(0.669)	NULL
NEXN	91624	genome.wustl.edu	37	1	78392235	78392235	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000342754	+1	known	p.E109*	0.905	120	0%	109	17.4%	1	0%	possibly_damaging(0.916)	deleterious(0.02)	deleterious(0.750)	NULL
FUBP1	8880	genome.wustl.edu	37	1	78428511	78428511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003902.3	-1	reviewed	p.R430C	1.000	223	0%	141	46.8%	68	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
DNAJB4	11080	genome.wustl.edu	37	1	78470925	78470925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007034.3	+1	provisional	p.K44T	1.000	75	0%	79	45.6%	7	42.8%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
PTGFR	5737	genome.wustl.edu	37	1	79002311	79002311	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000959.3	+1	reviewed	p.N340T	1.000	102	0%	15	60%	0	-	benign(0.113)	deleterious(0.02)	neutral(0.392)	NULL
IFI44L	10964	genome.wustl.edu	37	1	79107273	79107273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006820.2	+1	validated	p.D435Y	0.921	437	0%	79	45.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ELTD1	64123	genome.wustl.edu	37	1	79385947	79385947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022159.3	-1	validated	p.T461I	1.000	104	0%	36	61.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
TTLL7	79739	genome.wustl.edu	37	1	84356121	84356121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024686.4	-1	validated	p.R751H	1.000	109	0%	18	33.3%	7	42.8%	possibly_damaging(0.697)	tolerated(0.11)	deleterious(0.522)	NULL
TTLL7	79739	genome.wustl.edu	37	1	84387010	84387010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024686.4	-1	validated	p.N404H	1.000	334	0%	81	46.9%	8	37.5%	possibly_damaging(0.807)	tolerated(0.14)	deleterious(0.553)	NULL
TTLL7	79739	genome.wustl.edu	37	1	84417540	84417540	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024686.4	-1	validated	p.K49Q	1.000	97	0%	113	41.6%	2	50%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
CTBS	1486	genome.wustl.edu	37	1	85035706	85035706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004388.2	-1	validated	p.E145K	1.000	101	0%	131	45%	6	16.6%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
SSX2IP	117178	genome.wustl.edu	37	1	85128048	85128048	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014021.3	-1	reviewed	p.E254*	1.000	322	0%	161	46.6%	10	20%	-	-	-	NULL
LPAR3	23566	genome.wustl.edu	37	1	85331531	85331531	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012152.2	-1	reviewed	p.G91	0.999	102	0%	45	48.9%	7	57.1%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MCOLN2	255231	genome.wustl.edu	37	1	85424222	85424222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153259.2	-1	reviewed	p.A134D	0.997	72	0%	33	54.5%	1	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
SYDE2	84144	genome.wustl.edu	37	1	85647856	85647856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032184.1	-1	validated	p.E823D	1.000	119	0%	86	41.9%	2	0%	possibly_damaging(0.827)	deleterious(0.01)	deleterious(0.720)	superfamily_GTPase activation domain GAP
SYDE2	84144	genome.wustl.edu	37	1	85648709	85648709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032184.1	-1	validated	p.F539C	1.000	211	0%	127	37%	3	33.3%	benign(0.3)	deleterious(0)	deleterious(0.537)	NULL
SYDE2	84144	genome.wustl.edu	37	1	85666159	85666159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032184.1	-1	validated	p.R174H	0.002	35	0%	20	60%	1	0%	benign(0)	tolerated(1)	-	NULL
CYR61	3491	genome.wustl.edu	37	1	86048229	86048229	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001554.4	+1	validated	p.N255	1.000	76	0%	93	52.7%	258	39.1%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
COL24A1	255631	genome.wustl.edu	37	1	86211174	86211174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152890.5	-1	validated	p.N1485H	1.000	143	0%	122	45.9%	0	-	probably_damaging(0.976)	tolerated(0.6)	neutral(0.422)	NULL
ODF2L	57489	genome.wustl.edu	37	1	86836772	86836772	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020729.2	-1	validated	p.E329*	1.000	136	0%	107	45.8%	8	12.5%	-	-	-	NULL
ODF2L	57489	genome.wustl.edu	37	1	86851215	86851215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020729.2	-1	validated	p.E58K	0.530	136	0%	63	49.2%	15	20%	benign(0.422)	deleterious(0.01)	deleterious(0.542)	NULL
CLCA2	9635	genome.wustl.edu	37	1	86904627	86904627	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006536.5	+1	reviewed	p.T347	0.001	296	0%	44	50%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
CLCA1	1179	genome.wustl.edu	37	1	86934674	86934674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001285.3	+1	reviewed	p.S7Y	0.076	400	0%	119	41.2%	0	-	benign(0.069)	tolerated(0.89)	neutral(0.004)	HMMPfam_CLCA_N
CLCA1	1179	genome.wustl.edu	37	1	86952422	86952422	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001285.3	+1	reviewed	p.R390*	0.016	253	0%	33	36.4%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CLCA4	22802	genome.wustl.edu	37	1	87025936	87025936	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012128.3	+1	reviewed	p.E115*	0.982	410	0%	91	44%	0	-	-	-	-	HMMPfam_CLCA_N
CLCA4	22802	genome.wustl.edu	37	1	87045226	87045226	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012128.3	+1	reviewed	p.I771S	0.000	278	0%	35	40%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
CLCA4	22802	genome.wustl.edu	37	1	87045767	87045767	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012128.3	+1	reviewed	p.I833	0.126	174	0%	23	47.8%	0	-	-	-	-	NULL
SH3GLB1	51100	genome.wustl.edu	37	1	87185243	87185243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016009.3	+1	validated	p.R90C	1.000	58	1.7%	84	42.9%	69	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAR,HMMSmart_SM00721
PKN2	5586	genome.wustl.edu	37	1	89206681	89206681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006256.2	+1	validated	p.R20Q	1.000	64	0%	36	52.8%	1	100%	possibly_damaging(0.623)	tolerated(0.14)	neutral(0.467)	NULL
PKN2	5586	genome.wustl.edu	37	1	89270582	89270582	+	Missense_Mutation	SNP	G	G	T	rs147713481		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006256.2	+1	validated	p.K493N	1.000	48	0%	62	35.5%	9	11.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PKN2	5586	genome.wustl.edu	37	1	89287653	89287653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006256.2	+1	validated	p.L770S	1.000	218	0%	164	42.1%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PKN2	5586	genome.wustl.edu	37	1	89298521	89298521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006256.2	+1	validated	p.S886Y	1.000	68	0%	49	57.1%	24	37.5%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GBP1	2633	genome.wustl.edu	37	1	89521796	89521796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002053.2	-1	validated	p.A424V	0.001	221	0%	206	35%	17	0%	benign(0.012)	tolerated(0.2)	neutral(0.050)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
LRRC8C	84230	genome.wustl.edu	37	1	90180019	90180019	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032270.4	+1	validated	p.I630	0.047	61	1.6%	29	58.6%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRRC8D	55144	genome.wustl.edu	37	1	90398818	90398818	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134479.1	+1	validated	p.S64*	1.000	243	0%	89	42.7%	33	33.3%	-	-	-	NULL
ZNF326	284695	genome.wustl.edu	37	1	90473167	90473167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182976.2	+1	validated	p.S158N	1.000	162	0%	32	50%	12	75%	possibly_damaging(0.807)	tolerated(0.34)	neutral(0.327)	NULL
HFM1	164045	genome.wustl.edu	37	1	91731608	91731608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017975.3	-1	validated	p.S1314A	0.998	326	0%	229	33.2%	0	-	benign(0.137)	tolerated(0.16)	neutral(0.071)	NULL
HFM1	164045	genome.wustl.edu	37	1	91733350	91733350	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017975.3	-1	validated	p.L1279V	0.964	160	0%	110	41.8%	2	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
HFM1	164045	genome.wustl.edu	37	1	91790316	91790316	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000430465	-1	known	p.E37G	1.000	72	0%	76	43.4%	0	-	-	-	-	HMMPfam_Sec63
HFM1	164045	genome.wustl.edu	37	1	91809054	91809054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017975.3	-1	validated	p.K756N	1.000	45	0%	51	31.4%	1	100%	possibly_damaging(0.889)	tolerated(0.13)	deleterious(0.602)	NULL
HFM1	164045	genome.wustl.edu	37	1	91818062	91818062	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017975.3	-1	validated	e15+1	1.000	110	0%	42	61.9%	0	-	-	-	-	-
HFM1	164045	genome.wustl.edu	37	1	91844691	91844691	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017975.3	-1	validated	p.E363*	1.000	311	0%	68	41.2%	3	66.6%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
HFM1	164045	genome.wustl.edu	37	1	91846513	91846513	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017975.3	-1	validated	p.E277*	1.000	111	0%	48	31.2%	0	-	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
BRDT	676	genome.wustl.edu	37	1	92433818	92433818	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001726.3	+1	validated	e3+1	0.953	187	0%	152	48%	0	-	-	-	-	-
BRDT	676	genome.wustl.edu	37	1	92446848	92446848	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001726.3	+1	validated	p.E592*	1.000	161	0%	199	41.2%	0	-	-	-	-	NULL
BRDT	676	genome.wustl.edu	37	1	92470743	92470743	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001726.3	+1	validated	p.E888*	0.079	184	0%	76	46.1%	0	-	-	-	-	NULL
LOC646817	646817	genome.wustl.edu	37	1	92540535	92540535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929774.4	-1	model	p.P155H	1.000	18	0%	46	32.6%	40	0%	-	-	-	HMMPfam_NAP
BTBD8	284697	genome.wustl.edu	37	1	92612806	92612806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183242.3	+1	validated	p.L334I	1.000	369	0%	173	49.1%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA1107	23285	genome.wustl.edu	37	1	92643377	92643377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015237.2	+1	validated	p.S350Y	0.978	78	0%	90	48.9%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
KIAA1107	23285	genome.wustl.edu	37	1	92647664	92647664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015237.2	+1	validated	p.I1037S	0.739	112	0%	98	41.8%	2	50%	benign(0.255)	deleterious(0.01)	neutral(0.432)	NULL
C1orf146	388649	genome.wustl.edu	37	1	92707847	92707847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012425.1	+1	validated	p.I49L	1.000	192	0%	124	50.8%	0	-	benign(0.006)	tolerated(0.11)	neutral(0.272)	NULL
GLMN	11146	genome.wustl.edu	37	1	92754543	92754543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053274.2	-1	reviewed	p.F187C	1.000	188	0%	160	48.7%	13	61.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FKBP12
EVI5	7813	genome.wustl.edu	37	1	93163485	93163485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005665.4	-1	validated	p.R277C	1.000	235	0%	162	43.2%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164
MTF2	22823	genome.wustl.edu	37	1	93592843	93592843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007358.3	+1	validated	p.D326Y	1.000	228	0%	92	37%	15	53.3%	possibly_damaging(0.845)	deleterious(0.01)	deleterious(0.730)	NULL
MTF2	22823	genome.wustl.edu	37	1	93602354	93602354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007358.3	+1	validated	p.D518Y	1.000	105	0%	35	37.1%	27	37%	possibly_damaging(0.815)	tolerated(0.07)	deleterious(0.627)	NULL
DR1	1810	genome.wustl.edu	37	1	93812363	93812363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001938.2	+1	reviewed	p.A54V	1.000	79	0%	105	38.1%	48	54.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold
ARHGAP29	9411	genome.wustl.edu	37	1	94645318	94645318	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004815.3	-1	validated	p.F815V	1.000	147	0%	145	44.1%	16	25%	possibly_damaging(0.561)	tolerated(0.16)	neutral(0.251)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ABCD3	5825	genome.wustl.edu	37	1	94964528	94964528	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002858.3	+1	reviewed	p.R520*	1.000	115	0%	97	48.5%	18	11.1%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
RWDD3	25950	genome.wustl.edu	37	1	95710241	95710241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015485.4	+1	validated	p.R187I	0.967	82	0%	36	11.1%	13	7.6%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	NULL
RWDD3	25950	genome.wustl.edu	37	1	95712161	95712161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015485.4	+1	validated	p.E213K	1.000	186	0.5%	163	13.5%	16	18.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTBP2	58155	genome.wustl.edu	37	1	97250676	97250676	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021190.2	+1	reviewed	p.L257R	1.000	126	0%	116	34.5%	5	100%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_RNA-binding domain RBD
PTBP2	58155	genome.wustl.edu	37	1	97272007	97272007	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021190.2	+1	reviewed	p.F359	1.000	887	0%	296	44.9%	6	33.3%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SNX7	51375	genome.wustl.edu	37	1	99164437	99164437	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015976.3	+1	reviewed	p.Y338	0.922	118	0%	39	28.2%	63	41.2%	-	-	-	NULL
AGL	178	genome.wustl.edu	37	1	100349967	100349967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000028.2	+1	reviewed	p.E836*	1.000	78	0%	85	15.3%	12	8.3%	-	-	-	NULL
CCDC76	54482	genome.wustl.edu	37	1	100613556	100613556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019083.2	+1	validated	p.I308M	0.025	171	0%	76	38.2%	5	20%	benign(0.077)	tolerated(0.29)	neutral(0.035)	HMMPfam_TRM13
CCDC76	54482	genome.wustl.edu	37	1	100614347	100614347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019083.2	+1	validated	p.H473N	0.003	182	0%	57	42.1%	11	54.5%	benign(0.022)	tolerated(0.62)	neutral(0.005)	NULL
LRRC39	127495	genome.wustl.edu	37	1	100620722	100620722	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144620.2	-1	provisional	p.E233*	1.000	257	0%	209	47.8%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
DBT	1629	genome.wustl.edu	37	1	100671850	100671850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001918.2	-1	reviewed	p.G406D	1.000	69	0%	120	45%	16	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
VCAM1	7412	genome.wustl.edu	37	1	101188881	101188881	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001078.2	+1	reviewed	p.E216*	0.000	113	0.9%	25	36%	4	0%	-	-	-	HMMPfam_C2-set,superfamily_Immunoglobulin
EXTL2	2135	genome.wustl.edu	37	1	101339973	101339973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033025.1	-1	validated	p.Q173R	1.000	78	0%	13	30.8%	13	53.8%	benign(0.001)	tolerated(1)	-	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases
SLC30A7	148867	genome.wustl.edu	37	1	101379278	101379278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144884.1	+1	validated	p.D191N	1.000	240	0%	22	45.5%	5	20%	benign(0.071)	tolerated(0.34)	neutral(0.028)	HMMPfam_Cation_efflux
SLC30A7	148867	genome.wustl.edu	37	1	101427428	101427428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144884.1	+1	validated	p.R296I	1.000	187	0%	233	49.4%	5	60%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cation_efflux
OLFM3	118427	genome.wustl.edu	37	1	102270222	102270222	+	Splice_Site	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000424771	-1	known	e3+1	1.000	183	0%	14	57.1%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	-
COL11A1	1301	genome.wustl.edu	37	1	103347273	103347273	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080629.2	-1	reviewed	p.E1686*	1.000	177	0%	99	47.5%	1	0%	-	-	-	HMMPfam_COLFI,HMMSmart_COLFI
RNPC3	55599	genome.wustl.edu	37	1	104087652	104087652	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017619.3	+1	reviewed	p.E379*	0.998	74	0%	87	44.8%	7	14.2%	-	-	-	NULL
AMY2B	280	genome.wustl.edu	37	1	104122071	104122071	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020978.3	+1	reviewed	p.S495	1.000	353	0%	110	47.3%	3	66.6%	-	-	-	HMMPfam_Alpha-amylase_C,HMMSmart_SM00632,superfamily_Glycosyl hydrolase domain
AMY2A	279	genome.wustl.edu	37	1	104162220	104162220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000699.2	+1	reviewed	p.E186D	1.000	754	0%	259	25.5%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat
LOC100129138	100129138	genome.wustl.edu	37	1	104615796	104615796	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_036957.2	+1	model	NULL	0.001	40	0%	14	42.9%	1	0%	-	-	-	-
PRMT6	55170	genome.wustl.edu	37	1	107600445	107600445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018137.2	+1	validated	p.D311Y	1.000	124	0%	37	40.5%	39	23%	benign(0.001)	tolerated(1)	-	NULL
VAV3	10451	genome.wustl.edu	37	1	108247226	108247226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006113.4	-1	reviewed	p.A551T	1.000	211	0%	96	53.1%	0	-	benign(0.013)	tolerated(0.16)	neutral(0.060)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
FAM102B	284611	genome.wustl.edu	37	1	109167314	109167314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010883.2	+1	validated	p.S167Y	1.000	615	0%	156	39.7%	2	100%	possibly_damaging(0.624)	deleterious(0.01)	deleterious(0.623)	NULL
PRPF38B	55119	genome.wustl.edu	37	1	109238668	109238668	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018061.2	+1	validated	p.R117*	1.000	214	0%	171	50.3%	20	25%	-	-	-	HMMPfam_PRP38
PRPF38B	55119	genome.wustl.edu	37	1	109241957	109241957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018061.2	+1	validated	p.R319Q	1.000	77	0%	26	50%	38	23.6%	unknown(0)	tolerated(0.07)	-	NULL
FNDC7	163479	genome.wustl.edu	37	1	109261553	109261553	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000370019	+1	known	p.L133R	0.992	117	0%	66	50%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
STXBP3	6814	genome.wustl.edu	37	1	109321941	109321941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007269.2	+1	validated	p.R240C	1.000	441	0.2%	106	42.5%	20	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1-like
STXBP3	6814	genome.wustl.edu	37	1	109337466	109337466	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007269.2	+1	validated	p.N349	0.959	133	0%	115	53%	22	27.2%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
AKNAD1	254268	genome.wustl.edu	37	1	109363215	109363215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152763.3	-1	validated	p.R734I	0.004	140	0%	193	47.7%	0	-	possibly_damaging(0.604)	deleterious(0.05)	deleterious(0.555)	NULL
AKNAD1	254268	genome.wustl.edu	37	1	109391385	109391385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152763.3	-1	validated	p.D412N	0.588	79	0%	151	36.4%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
AKNAD1	254268	genome.wustl.edu	37	1	109395029	109395029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152763.3	-1	validated	p.E86D	0.000	179	0%	143	42%	0	-	benign(0)	tolerated(1)	-	NULL
C1orf194	127003	genome.wustl.edu	37	1	109649663	109649663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122961.1	-1	validated	p.L82M	0.188	193	0%	102	42.2%	1	0%	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	NULL
SARS	6301	genome.wustl.edu	37	1	109779016	109779016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006513.2	+1	reviewed	p.S368Y	1.000	48	0%	55	18.2%	147	13.6%	benign(0.257)	deleterious(0)	deleterious(0.471)	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases
MYBPHL	343263	genome.wustl.edu	37	1	109838952	109838952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010985.2	-1	validated	p.F257L	1.000	110	0%	74	54.1%	0	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	superfamily_Immunoglobulin
SYPL2	284612	genome.wustl.edu	37	1	110020512	110020512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040709.1	+1	validated	p.D177N	1.000	186	0.5%	65	38.5%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_MARVEL
GNAI3	2773	genome.wustl.edu	37	1	110091367	110091367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006496.2	+1	validated	p.D9Y	1.000	54	0%	30	40%	58	48.2%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMPfam_G-alpha,superfamily_P-loop containing nucleoside triphosphate hydrolases
GSTM2	2946	genome.wustl.edu	37	1	110211103	110211103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000848.3	+1	reviewed	p.K31N	0.952	86	0%	57	42.1%	7	28.5%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_GST_N,superfamily_Thiordxn-like_fd
FAM40A	85369	genome.wustl.edu	37	1	110585882	110585882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033088.2	+1	validated	p.R353Q	0.999	26	0%	27	44.4%	17	47%	possibly_damaging(0.613)	tolerated(0.6)	neutral(0.217)	HMMPfam_N1221
SLC6A17	388662	genome.wustl.edu	37	1	110714724	110714724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010898.2	+1	validated	p.G110E	1.000	114	0%	41	48.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
RBM15	64783	genome.wustl.edu	37	1	110882636	110882636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022768.4	+1	validated	p.K203N	1.000	19	0%	22	40.9%	1	0%	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HBXIP	10542	genome.wustl.edu	37	1	110948950	110948950	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006402.2	-1	reviewed	p.L111	0.640	71	0%	116	43.1%	256	45.7%	-	-	-	NULL
KCNA3	3738	genome.wustl.edu	37	1	111215979	111215979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002232.3	-1	reviewed	p.Y485D	1.000	94	0%	49	49%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81324
LRIF1	55791	genome.wustl.edu	37	1	111494174	111494174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018372.3	-1	validated	p.K444N	1.000	595	0%	201	50.7%	6	83.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DENND2D	79961	genome.wustl.edu	37	1	111730937	111730937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024901.3	-1	provisional	p.K385N	1.000	94	0%	41	51.2%	7	42.8%	possibly_damaging(0.842)	deleterious(0.01)	deleterious(0.728)	HMMPfam_dDENN,HMMSmart_SM00801
DENND2D	79961	genome.wustl.edu	37	1	111731336	111731336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024901.3	-1	provisional	p.N363D	0.000	124	0%	52	34.6%	3	66.6%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
DENND2D	79961	genome.wustl.edu	37	1	111742286	111742286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024901.3	-1	provisional	p.E68K	0.001	103	0%	73	37%	4	25%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_uDENN,HMMSmart_SM00800
CHI3L2	1117	genome.wustl.edu	37	1	111773881	111773881	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004000.2	+1	validated	p.L98	0.922	129	0.8%	226	42.9%	1	0%	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
OVGP1	5016	genome.wustl.edu	37	1	111969225	111969225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002557.3	-1	reviewed	p.A32T	1.000	300	0%	52	21.2%	0	-	possibly_damaging(0.516)	deleterious(0.03)	deleterious(0.538)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
LOC100287536	100287536	genome.wustl.edu	37	1	111984542	111984542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342100.1	+1	model	p.E145D	0.000	58	0%	26	46.2%	4	25%	-	-	-	NULL
FAM212B	55924	genome.wustl.edu	37	1	112270030	112270030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019099.4	-1	validated	p.R152*	1.000	248	0%	34	44.1%	1	0%	-	-	-	NULL
FAM212B	55924	genome.wustl.edu	37	1	112270172	112270172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019099.4	-1	validated	p.K104N	0.000	154	0%	31	16.1%	2	0%	benign(0.009)	tolerated(0.46)	neutral(0.013)	NULL
CTTNBP2NL	55917	genome.wustl.edu	37	1	112998696	112998696	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018704.2	+1	validated	p.A194	0.553	145	0%	57	47.4%	19	31.5%	-	-	-	HMMPfam_CortBP2
ST7L	54879	genome.wustl.edu	37	1	113125061	113125061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000418497	-1	known	p.E169*	1.000	328	0%	493	44.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ST7
MAGI3	260425	genome.wustl.edu	37	1	114226481	114226481	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142782.1	+1	validated	p.E1431*	0.002	79	0%	127	48%	20	40%	-	-	-	NULL
RSBN1	54665	genome.wustl.edu	37	1	114308990	114308990	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018364.3	-1	validated	p.D674A	1.000	104	0%	47	34%	26	69.2%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RSBN1	54665	genome.wustl.edu	37	1	114310956	114310956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018364.3	-1	validated	p.E572K	1.000	262	0%	110	50.9%	10	50%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
PTPN22	26191	genome.wustl.edu	37	1	114399182	114399182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015967.4	-1	reviewed	p.F156L	1.000	240	0.4%	109	43.1%	2	0%	possibly_damaging(0.579)	tolerated(0.05)	deleterious(0.544)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
BCL2L15	440603	genome.wustl.edu	37	1	114424511	114424511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010922.2	-1	validated	p.L120I	0.194	173	0%	74	36.5%	10	30%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
DENND2C	163259	genome.wustl.edu	37	1	115143520	115143520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198459.3	-1	validated	p.R569Q	1.000	212	0%	72	33.3%	0	-	possibly_damaging(0.707)	tolerated(0.19)	neutral(0.304)	HMMPfam_DENN,HMMSmart_DENN
DENND2C	163259	genome.wustl.edu	37	1	115166229	115166229	+	Missense_Mutation	SNP	C	C	T	rs189506550	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198459.3	-1	validated	p.R281Q	1.000	158	0%	94	48.9%	0	-	possibly_damaging(0.626)	tolerated(0.41)	neutral(0.233)	NULL
AMPD1	270	genome.wustl.edu	37	1	115231306	115231306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000036.2	-1	reviewed	p.D31Y	1.000	157	0%	56	41.1%	0	-	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	NULL
AMPD1	270	genome.wustl.edu	37	1	115238109	115238109	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000369538	-1	known	p.S28*	0.122	203	0%	97	49.5%	0	-	-	-	-	NULL
NRAS	4893	genome.wustl.edu	37	1	115251242	115251242	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002524.3	-1	reviewed	p.E162*	1.000	471	0%	192	10.4%	59	1.6%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSDE1	7812	genome.wustl.edu	37	1	115267948	115267948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130523.1	-1	validated	p.F564L	1.000	630	0%	179	44.1%	413	47.6%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK
CSDE1	7812	genome.wustl.edu	37	1	115276691	115276691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130523.1	-1	validated	p.F225L	1.000	116	0.9%	67	47.8%	262	50.7%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK
TSPAN2	10100	genome.wustl.edu	37	1	115596074	115596074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005725.4	-1	reviewed	p.D176N	0.998	313	0%	56	55.4%	2	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
NGF	4803	genome.wustl.edu	37	1	115829101	115829101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002506.2	-1	reviewed	p.E106K	0.021	151	0%	59	49.2%	0	-	benign(0.029)	tolerated(0.45)	neutral(0.013)	NULL
SLC22A15	55356	genome.wustl.edu	37	1	116569517	116569517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018420.2	+1	validated	p.S201L	1.000	375	0.3%	113	34.5%	0	-	benign(0.084)	tolerated(0.15)	neutral(0.247)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SLC22A15	55356	genome.wustl.edu	37	1	116609279	116609279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018420.2	+1	validated	p.R502S	0.376	125	0%	21	47.6%	1	0%	benign(0.337)	deleterious(0.02)	deleterious(0.489)	NULL
ATP1A1	476	genome.wustl.edu	37	1	116930826	116930826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000701.7	+1	reviewed	p.S154I	1.000	212	0%	103	42.7%	122	51.6%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ATP1A1	476	genome.wustl.edu	37	1	116937891	116937891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000701.7	+1	reviewed	p.R607Q	0.999	271	0%	74	37.8%	297	31.3%	possibly_damaging(0.941)	tolerated(0.09)	deleterious(0.683)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
TTF2	8458	genome.wustl.edu	37	1	117634571	117634571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003594.3	+1	reviewed	p.S935L	1.000	107	0%	24	66.7%	13	46.1%	possibly_damaging(0.496)	tolerated(0.2)	neutral(0.215)	NULL
TTF2	8458	genome.wustl.edu	37	1	117644036	117644036	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003594.3	+1	reviewed	p.L1127V	0.993	76	0%	53	34%	16	43.7%	benign(0.005)	tolerated(0.1)	neutral(0.286)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MAN1A2	10905	genome.wustl.edu	37	1	117944840	117944840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006699.3	+1	validated	p.R112Q	1.000	110	0%	52	44.2%	11	36.3%	benign(0.337)	tolerated(0.49)	neutral(0.116)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118598378	118598378	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206996.2	-1	validated	p.I900M	0.000	211	0%	137	48.2%	1	100%	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118628628	118628628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206996.2	-1	validated	p.F560C	0.942	299	0%	95	40%	1	100%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
TBX15	6913	genome.wustl.edu	37	1	119427530	119427530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152380.2	-1	reviewed	p.S439Y	1.000	112	0%	53	34%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
HSD3B2	3284	genome.wustl.edu	37	1	119958096	119958096	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000198.3	+1	reviewed	p.I18	0.571	291	0%	77	51.9%	0	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
HSD3B2	3284	genome.wustl.edu	37	1	119964717	119964717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000198.3	+1	reviewed	p.S198Y	0.000	78	0%	41	34.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
HMGCS2	3158	genome.wustl.edu	37	1	120302570	120302570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005518.3	-1	reviewed	p.P201H	1.000	40	0%	21	61.9%	6	50%	possibly_damaging(0.754)	deleterious(0.01)	deleterious(0.683)	HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like
ADAM30	11085	genome.wustl.edu	37	1	120437480	120437480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021794.2	-1	reviewed	p.R494C	0.000	110	0%	53	47.2%	0	-	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	HMMPfam_ADAM_CR,HMMSmart_SM00608
NOTCH2	4853	genome.wustl.edu	37	1	120458859	120458859	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024408.2	-1	reviewed	p.S2162	0.986	302	0.3%	76	51.3%	17	70.5%	-	-	-	NULL
NOTCH2	4853	genome.wustl.edu	37	1	120512179	120512179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024408.2	-1	reviewed	p.D355N	1.000	169	0%	22	45.5%	8	62.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
FAM72B	653820	genome.wustl.edu	37	1	120846048	120846048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100910.1	+1	predicted	p.S95F	1.000	622	0%	423	44%	9	33.3%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
FCGR1B	2210	genome.wustl.edu	37	1	120927306	120927306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017986.2	-1	validated	p.R225I	0.025	165	0%	262	30.9%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144863443	144863443	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014644.4	-1	validated	e37-1	1.000	262	0%	118	24.6%	0	-	-	-	-	-
PDE4DIP	9659	genome.wustl.edu	37	1	144871857	144871857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014644.4	-1	validated	p.K1702R	0.996	201	0%	64	15.6%	0	-	unknown(0)	deleterious(0.03)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144874875	144874875	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014644.4	-1	validated	p.K1578R	1.000	275	0%	58	22.4%	0	-	unknown(0)	tolerated(0.05)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144882580	144882580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014644.4	-1	validated	p.E1147K	0.002	294	0%	198	20.7%	2	0%	unknown(0)	deleterious(0.01)	-	NULL
PEX11B	8799	genome.wustl.edu	37	1	145522788	145522788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003846.2	+1	validated	p.D217N	1.000	236	0%	55	45.5%	23	39.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PEX11
FMO5	2330	genome.wustl.edu	37	1	146672739	146672739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001461.2	-1	reviewed	p.F393C	1.000	198	0%	93	38.7%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains
CHD1L	9557	genome.wustl.edu	37	1	146728209	146728209	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004284.3	+1	validated	p.L163	1.000	357	0%	226	42%	9	44.4%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CA14	23632	genome.wustl.edu	37	1	150235807	150235807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012113.1	+1	reviewed	p.S277Y	1.000	96	0%	84	38.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
RPRD2	23248	genome.wustl.edu	37	1	150443139	150443139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015203.3	+1	validated	p.T572N	0.000	259	0%	196	38.3%	22	40.9%	benign(0.011)	deleterious(0.02)	neutral(0.384)	NULL
ECM1	1893	genome.wustl.edu	37	1	150485747	150485747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004425.3	+1	reviewed	p.R476Q	0.806	188	0%	144	50%	19	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_ECM1
HORMAD1	84072	genome.wustl.edu	37	1	150681425	150681425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032132.3	-1	provisional	p.C114R	1.000	169	0%	209	41.1%	1	0%	possibly_damaging(0.883)	tolerated(0.06)	deleterious(0.667)	HMMPfam_HORMA,superfamily_The spindle assembly checkpoint protein mad2
CTSS	1520	genome.wustl.edu	37	1	150705587	150705587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004079.3	-1	reviewed	p.R311W	1.000	60	0%	211	40.8%	42	16.6%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
PRUNE	58497	genome.wustl.edu	37	1	151001302	151001302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021222.1	+1	provisional	p.A272V	0.578	379	0%	113	44.2%	16	62.5%	benign(0.167)	tolerated(0.26)	neutral(0.049)	HMMPfam_DHHA2,superfamily_DHH phosphoesterases
LYSMD1	388695	genome.wustl.edu	37	1	151134520	151134520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_212551.4	-1	validated	p.K79N	1.000	356	0.3%	198	43.4%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LysM,HMMPfam_LysM,superfamily_SSF54106
TMOD4	29765	genome.wustl.edu	37	1	151146916	151146916	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013353.2	-1	validated	p.L77	0.968	198	0%	65	30.8%	0	-	-	-	-	HMMPfam_Tropomodulin
PIP5K1A	8394	genome.wustl.edu	37	1	151211608	151211608	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135638.1	+1	validated	p.F411C	1.000	232	0%	232	36.2%	27	48.1%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
POGZ	23126	genome.wustl.edu	37	1	151413450	151413450	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015100.2	-1	reviewed	p.S79	1.000	157	0%	85	37.6%	5	40%	-	-	-	NULL
OAZ3	51686	genome.wustl.edu	37	1	151739764	151739764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016178.2	+1	reviewed	p.E98*	1.000	62	0%	57	43.9%	5	60%	-	-	-	HMMPfam_ODC_AZ
THEM4	117145	genome.wustl.edu	37	1	151861743	151861743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053055.3	-1	reviewed	p.E131D	0.587	100	0%	108	45.4%	9	44.4%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	superfamily_SSF54637
THEM4	117145	genome.wustl.edu	37	1	151867530	151867530	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053055.3	-1	reviewed	p.K80	0.000	389	0%	159	52.8%	14	50%	-	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152082206	152082206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007113.2	-1	provisional	p.R1163C	0.995	1239	0.1%	236	40.3%	3	0%	unknown(0)	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152085134	152085134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007113.2	-1	provisional	p.R187C	0.000	183	0%	183	49.7%	0	-	unknown(0)	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152186804	152186804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009931.1	-1	validated	p.Y2434C	0.000	236	0%	313	12.5%	0	-	unknown(0)	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152187482	152187482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009931.1	-1	validated	p.S2208Y	0.334	183	0%	226	9.3%	2	0%	unknown(0)	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152188121	152188121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009931.1	-1	validated	p.S1995Y	0.000	199	0%	309	17.5%	0	-	unknown(0)	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152275327	152275327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002016.1	-1	reviewed	p.S4012Y	0.000	184	0%	136	47.8%	0	-	possibly_damaging(0.922)	deleterious(0.03)	deleterious(0.736)	NULL
FLG	2312	genome.wustl.edu	37	1	152275549	152275549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002016.1	-1	reviewed	p.S3938Y	0.000	166	0%	101	43.6%	1	100%	possibly_damaging(0.948)	tolerated(0.07)	deleterious(0.710)	NULL
FLG	2312	genome.wustl.edu	37	1	152287836	152287836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002016.1	-1	reviewed	p.L33	1.000	185	0%	240	39.6%	0	-	-	-	-	HMMPfam_S_100,superfamily_SSF47473
FLG2	388698	genome.wustl.edu	37	1	152324007	152324007	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014342.2	-1	provisional	p.S2085	0.000	771	0.1%	229	42.4%	0	-	-	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152326548	152326548	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014342.2	-1	provisional	p.T1238	0.000	405	0%	157	44.6%	0	-	-	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152326695	152326695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014342.2	-1	provisional	p.F1189L	0.000	174	0%	91	38.5%	0	-	unknown(0)	tolerated(0.68)	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152327118	152327118	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014342.2	-1	provisional	p.S1048	0.000	343	0%	132	50%	0	-	-	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152329615	152329615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014342.2	-1	provisional	p.S216Y	0.184	238	0%	127	40.9%	0	-	unknown(0)	deleterious(0.03)	-	NULL
CRNN	49860	genome.wustl.edu	37	1	152383181	152383181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016190.2	-1	reviewed	p.A126V	0.000	147	0%	62	35.5%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
KPRP	448834	genome.wustl.edu	37	1	152733045	152733045	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001025231.1	+1	provisional	p.I327	0.024	59	0%	40	42.5%	0	-	-	-	-	NULL
IVL	3713	genome.wustl.edu	37	1	152883038	152883038	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005547.2	+1	reviewed	p.L255	0.000	53	0%	29	31%	0	-	-	-	-	HMMPfam_Involucrin
SPRR2B	6701	genome.wustl.edu	37	1	153043276	153043276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017418.1	-1	provisional	p.P14S	0.972	332	0%	83	44.6%	0	-	unknown(0)	-	-	NULL
ILF2	3608	genome.wustl.edu	37	1	153640118	153640118	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004515.2	-1	reviewed	p.R103*	1.000	306	0%	272	45.2%	234	4.7%	-	-	-	HMMSmart_SM00572,superfamily_Nucleotidyltransferase
ENSG00000234010	0	genome.wustl.edu	37	1	153896367	153896367	+	RNA	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000413970	+1	known	NULL	0.005	74	0%	132	44.7%	0	-	-	-	-	-
NUP210L	91181	genome.wustl.edu	37	1	154090209	154090209	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207308.2	-1	validated	p.E538*	1.000	129	0%	102	41.2%	0	-	-	-	-	superfamily_Invasin_intimin
NUP210L	91181	genome.wustl.edu	37	1	154090287	154090287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207308.2	-1	validated	p.G512*	1.000	167	0%	119	47.1%	0	-	-	-	-	superfamily_Invasin_intimin
IL6R	3570	genome.wustl.edu	37	1	154406993	154406993	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000565.2	+1	reviewed	e4-2	0.040	63	0%	41	31.7%	0	-	-	-	-	-
KCNN3	3782	genome.wustl.edu	37	1	154680718	154680718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002249.4	-1	reviewed	p.E644*	0.998	101	0%	48	54.2%	1	0%	-	-	-	NULL
PBXIP1	57326	genome.wustl.edu	37	1	154923862	154923862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020524.2	-1	provisional	p.E85D	0.001	97	0%	81	44.4%	45	51.1%	possibly_damaging(0.737)	tolerated(0.55)	neutral(0.277)	NULL
PYGO2	90780	genome.wustl.edu	37	1	154933477	154933477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138300.3	-1	validated	p.K43N	1.000	74	0%	127	43.3%	16	31.2%	unknown(0)	deleterious(0)	-	NULL
ZBTB7B	51043	genome.wustl.edu	37	1	154988066	154988066	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015872.2	+1	validated	p.I310	0.944	65	0%	18	50%	27	40.7%	-	-	-	NULL
DCST2	127579	genome.wustl.edu	37	1	154995639	154995639	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144622.2	-1	validated	p.E687*	0.005	63	0%	32	40.6%	1	0%	-	-	-	NULL
ADAM15	8751	genome.wustl.edu	37	1	155026816	155026816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207197.1	+1	reviewed	p.R149I	1.000	63	0%	56	42.9%	51	56.8%	probably_damaging(0.993)	deleterious(0.05)	deleterious(0.795)	HMMPfam_Pep_M12B_propep
MUC1	4582	genome.wustl.edu	37	1	155158646	155158646	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002456.4	-1	reviewed	p.N263H	0.828	4	0.000	54	0.407	166	28.9%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RUSC1-AS1	284618	genome.wustl.edu	37	1	155290652	155290652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039517.1	-1	predicted	p.R210C	0.937	58	0%	39	51.3%	0	-	-	-	-	NULL
MSTO2P	100129405	genome.wustl.edu	37	1	155717588	155717588	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_024117.1	+1	provisional	NULL	1.000	191	0%	119	40.3%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
SYT11	23208	genome.wustl.edu	37	1	155851155	155851155	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152280.4	+1	reviewed	p.F384	1.000	127	0%	79	41.8%	11	0%	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
HAPLN2	60484	genome.wustl.edu	37	1	156593692	156593692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021817.2	+1	validated	p.G60V	1.000	7	0.000	13	0.538	0	-	benign(0.221)	tolerated(0.49)	neutral(0.033)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
NES	10763	genome.wustl.edu	37	1	156641506	156641506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006617.1	-1	reviewed	p.I825T	0.000	100	0%	322	38.8%	7	14.2%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
NES	10763	genome.wustl.edu	37	1	156642067	156642067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006617.1	-1	reviewed	p.S638Y	0.090	37	0%	159	43.4%	8	12.5%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
CRABP2	1382	genome.wustl.edu	37	1	156675188	156675188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001878.2	-1	reviewed	p.E17D	1.000	183	0%	160	29.4%	83	51.8%	benign(0.001)	tolerated(1)	-	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Lipocalins
PRCC	5546	genome.wustl.edu	37	1	156770248	156770248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005973.4	+1	reviewed	p.F491C	1.000	79	0%	38	57.9%	134	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PRCC_Cterm
NTRK1	4914	genome.wustl.edu	37	1	156811908	156811908	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007792.1	+1	reviewed	p.P15	0.805	298	0%	96	39.6%	0	-	-	-	-	NULL
NTRK1	4914	genome.wustl.edu	37	1	156841419	156841419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002529.3	+1	reviewed	p.S241Y	0.995	123	0%	38	55.3%	0	-	benign(0.214)	tolerated(1)	neutral(0.021)	superfamily_Immunoglobulin
PEAR1	375033	genome.wustl.edu	37	1	156876428	156876428	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080471.1	+1	provisional	e5-1	0.908	68	0%	23	30.4%	0	-	-	-	-	-
PEAR1	375033	genome.wustl.edu	37	1	156880115	156880115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080471.1	+1	provisional	p.P590T	0.003	54	0%	32	50%	1	0%	possibly_damaging(0.607)	deleterious(0.02)	deleterious(0.594)	HMMSmart_EGF,HMMPfam_EGF_2
PEAR1	375033	genome.wustl.edu	37	1	156883040	156883040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080471.1	+1	provisional	p.S826L	1.000	119	0%	85	42.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Grow_fac_recept
ETV3	2117	genome.wustl.edu	37	1	157095426	157095426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145312.1	-1	validated	p.V249A	0.973	147	0%	76	46.1%	6	66.6%	benign(0.317)	deleterious(0)	deleterious(0.543)	NULL
ETV3	2117	genome.wustl.edu	37	1	157095480	157095480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145312.1	-1	validated	p.L231R	1.000	131	0%	64	43.8%	11	36.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
FCRL5	83416	genome.wustl.edu	37	1	157488262	157488262	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031281.2	-1	validated	p.V923	0.914	362	0%	424	44.8%	0	-	-	-	-	NULL
FCRL5	83416	genome.wustl.edu	37	1	157497424	157497424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031281.2	-1	validated	p.I648T	0.000	232	0%	38	34.2%	0	-	benign(0.124)	tolerated(0.28)	neutral(0.042)	HMMSmart_SM00409,superfamily_Immunoglobulin
FCRL4	83417	genome.wustl.edu	37	1	157556023	157556023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031282.2	-1	reviewed	p.Y357C	0.487	92	0%	19	42.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL3	115352	genome.wustl.edu	37	1	157667135	157667135	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052939.3	-1	reviewed	p.T213	0.004	136	0%	38	36.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158057937	158057937	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018240.5	+1	validated	p.N303	0.827	146	0%	69	30.4%	9	55.5%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158064536	158064536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018240.5	+1	validated	p.D634N	1.000	28	0.000	8	0.500	16	37.5%	possibly_damaging(0.907)	tolerated(0.18)	neutral(0.416)	NULL
CD1B	910	genome.wustl.edu	37	1	158299764	158299764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001764.2	-1	reviewed	p.F162C	0.005	115	0%	59	45.8%	0	-	benign(0.12)	deleterious(0.02)	neutral(0.393)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
CD1E	913	genome.wustl.edu	37	1	158326516	158326516	+	Splice_Site	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030893.2	+1	reviewed	e6-2	0.149	249	0%	232	48.3%	0	-	-	-	-	-
OR10T2	128360	genome.wustl.edu	37	1	158369062	158369062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004475.1	-1	provisional	p.F65L	0.044	195	0%	35	42.9%	0	-	possibly_damaging(0.946)	tolerated(0.09)	deleterious(0.686)	HMMPfam_7tm_1,superfamily_SSF81321
OR6P1	128366	genome.wustl.edu	37	1	158532730	158532730	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000334632	-1	known	p.I222S	0.013	177	0%	45	46.7%	0	-	possibly_damaging(0.462)	tolerated(0.07)	deleterious(0.471)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158584059	158584059	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003126.2	-1	reviewed	p.F2276V	1.000	144	0%	37	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_EF-hand
SPTA1	6708	genome.wustl.edu	37	1	158607858	158607858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003126.2	-1	reviewed	p.F1718L	1.000	197	0%	45	57.8%	0	-	probably_damaging(0.991)	tolerated(0.19)	deleterious(0.493)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158626363	158626363	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003126.2	-1	reviewed	p.N963	0.995	149	0%	88	60.2%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K3	391114	genome.wustl.edu	37	1	158687018	158687018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005327.2	-1	validated	p.M312I	0.860	241	0%	18	44.4%	0	-	benign(0.014)	tolerated(0.25)	neutral(0.037)	superfamily_SSF81321
PYHIN1	149628	genome.wustl.edu	37	1	158906768	158906768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152501.3	+1	validated	p.R23I	0.000	132	0%	83	41%	0	-	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	HMMPfam_PAAD_DAPIN
PYHIN1	149628	genome.wustl.edu	37	1	158911858	158911858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152501.3	+1	validated	p.K224R	0.001	100	0%	49	49%	0	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	HMMPfam_HIN
PYHIN1	149628	genome.wustl.edu	37	1	158911996	158911996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152501.3	+1	validated	p.I270S	0.000	50	0%	46	41.3%	0	-	possibly_damaging(0.903)	tolerated(0.08)	deleterious(0.658)	HMMPfam_HIN
IFI16	3428	genome.wustl.edu	37	1	158988388	158988388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005531.2	+1	reviewed	p.L307I	0.001	131	0%	145	46.9%	5	0%	benign(0.169)	tolerated(0.24)	neutral(0.053)	HMMPfam_HIN
AIM2	9447	genome.wustl.edu	37	1	159033453	159033453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004833.1	-1	reviewed	p.K276N	0.000	171	0%	123	51.2%	0	-	benign(0.074)	tolerated(0.46)	neutral(0.017)	HMMPfam_HIN
CADM3	57863	genome.wustl.edu	37	1	159159663	159159663	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021189.3	+1	validated	e2+1	1.000	109	0%	18	50%	0	-	-	-	-	-
OR10J1	26476	genome.wustl.edu	37	1	159410400	159410400	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012351.2	+1	validated	p.I284	0.100	148	0%	88	48.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10J5	127385	genome.wustl.edu	37	1	159505015	159505015	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004469.1	-1	provisional	p.P261	0.975	124	0%	36	38.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CRP	1401	genome.wustl.edu	37	1	159683765	159683765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000567.2	-1	reviewed	p.K75N	0.002	302	0%	124	40.3%	0	-	benign(0.047)	tolerated(0.2)	neutral(0.052)	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
ATP1A2	477	genome.wustl.edu	37	1	160090764	160090764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000702.3	+1	reviewed	p.E27D	0.998	297	0%	192	45.3%	52	42.3%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
ATP1A2	477	genome.wustl.edu	37	1	160094101	160094101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000702.3	+1	reviewed	p.R171W	1.000	236	0%	128	50.8%	86	46.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
ATP1A2	477	genome.wustl.edu	37	1	160106385	160106385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000702.3	+1	reviewed	p.F863L	1.000	202	0%	73	47.9%	89	51.6%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
ATP1A4	480	genome.wustl.edu	37	1	160147361	160147361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144699.3	+1	reviewed	p.E881D	0.998	524	0.2%	155	45.2%	2	0%	benign(0.009)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
CASQ1	844	genome.wustl.edu	37	1	160160706	160160706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001231.4	+1	reviewed	p.K49N	1.000	274	0%	101	40.6%	1	100%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
DCAF8	50717	genome.wustl.edu	37	1	160209773	160209773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015726.3	-1	reviewed	p.A146V	0.987	98	0%	25	56%	28	32.1%	benign(0.135)	tolerated(0.27)	neutral(0.045)	superfamily_WD40 repeat-like
PEX19	5824	genome.wustl.edu	37	1	160252819	160252819	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002857.3	-1	reviewed	p.F87	0.550	174	0%	72	58.3%	37	40.5%	-	-	-	HMMPfam_Pex19
PEX19	5824	genome.wustl.edu	37	1	160253413	160253413	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002857.3	-1	reviewed	p.F29	1.000	150	0%	99	57.6%	29	44.8%	-	-	-	NULL
CD84	8832	genome.wustl.edu	37	1	160535325	160535325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003874.3	-1	validated	p.H86R	0.064	391	0%	88	31.8%	0	-	benign(0.102)	tolerated(0.5)	neutral(0.018)	HMMSmart_SM00409,superfamily_Immunoglobulin
SLAMF1	6504	genome.wustl.edu	37	1	160589593	160589593	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003037.2	-1	validated	p.T279	0.865	755	0.1%	214	42.5%	0	-	-	-	-	NULL
CD48	962	genome.wustl.edu	37	1	160654867	160654867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001778.2	-1	provisional	p.K65N	0.991	267	0.4%	120	39.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,superfamily_Immunoglobulin
LY9	4063	genome.wustl.edu	37	1	160769829	160769829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002348.2	+1	validated	p.N137K	0.000	69	0%	62	40.3%	1	0%	probably_damaging(0.953)	tolerated(0.06)	deleterious(0.719)	HMMSmart_SM00409,superfamily_Immunoglobulin
ARHGAP30	257106	genome.wustl.edu	37	1	161022457	161022457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001025598.1	-1	validated	p.Q265H	1.000	34	0%	71	35.2%	2	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
PFDN2	5202	genome.wustl.edu	37	1	161070570	161070570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012394.3	-1	reviewed	p.N123S	1.000	486	0%	221	44.8%	298	48.9%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Prefoldin_2,superfamily_Prefoldin
DEDD	9191	genome.wustl.edu	37	1	161093967	161093967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039711.1	-1	reviewed	p.D96N	1.000	225	0%	62	48.4%	37	48.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
B4GALT3	8703	genome.wustl.edu	37	1	161141606	161141606	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003779.2	-1	reviewed	p.*394W	0.999	84	0%	47	44.7%	42	47.6%	-	-	-	NULL
FCER1G	2207	genome.wustl.edu	37	1	161188718	161188718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004106.1	+1	reviewed	p.E82D	1.000	317	0%	137	46%	64	0%	benign(0.146)	tolerated(0.37)	neutral(0.032)	HMMPfam_ITAM,HMMSmart_ITAM
HSPA6	3310	genome.wustl.edu	37	1	161496144	161496144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002155.3	+1	validated	p.E566K	0.974	98	0%	69	39.1%	10	20%	benign(0.334)	deleterious(0.01)	deleterious(0.511)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
DDR2	4921	genome.wustl.edu	37	1	162740099	162740099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014796.1	+1	reviewed	p.R434L	1.000	244	0%	36	63.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DDR2	4921	genome.wustl.edu	37	1	162741963	162741963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014796.1	+1	reviewed	p.D552Y	1.000	120	0%	15	80%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_Kinase_like
DDR2	4921	genome.wustl.edu	37	1	162743304	162743304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014796.1	+1	reviewed	p.D592Y	1.000	193	0%	43	39.5%	3	0%	possibly_damaging(0.628)	deleterious(0.01)	deleterious(0.625)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
UCK2	7371	genome.wustl.edu	37	1	165876938	165876938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012474.3	+1	reviewed	p.V222M	1.000	164	0%	48	35.4%	55	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MAEL	84944	genome.wustl.edu	37	1	166959016	166959016	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032858.1	+1	validated	p.R59*	1.000	10	0%	17	35.3%	0	-	-	-	-	superfamily_HMG-box,HMMPfam_DUF1898
MAEL	84944	genome.wustl.edu	37	1	166974600	166974600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032858.1	+1	validated	p.D271N	1.000	137	0%	56	44.6%	0	-	possibly_damaging(0.52)	tolerated(0.43)	neutral(0.189)	NULL
MAEL	84944	genome.wustl.edu	37	1	166987080	166987080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032858.1	+1	validated	p.S309A	1.000	244	0%	33	39.4%	0	-	possibly_damaging(0.505)	tolerated(0.44)	neutral(0.182)	NULL
MAEL	84944	genome.wustl.edu	37	1	166990995	166990995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032858.1	+1	validated	p.S403Y	0.936	148	0%	48	52.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
GPA33	10223	genome.wustl.edu	37	1	167042654	167042654	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005814.1	-1	reviewed	p.I56L	0.032	291	0%	80	53.7%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
DUSP27	92235	genome.wustl.edu	37	1	167097069	167097069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080426.1	+1	provisional	p.R901C	0.980	234	0%	88	39.8%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
CD247	919	genome.wustl.edu	37	1	167400953	167400953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198053.2	-1	reviewed	p.D154N	0.889	253	0.4%	96	45.8%	6	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_ITAM,HMMSmart_SM00077
CD247	919	genome.wustl.edu	37	1	167408615	167408615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198053.2	-1	reviewed	p.P62H	0.008	102	0%	30	56.7%	4	0%	possibly_damaging(0.491)	tolerated(0.07)	deleterious(0.483)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167830132	167830132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018417.4	-1	reviewed	p.L596I	0.712	626	0%	236	44.9%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167839608	167839608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018417.4	-1	reviewed	p.K501N	0.997	194	0%	173	41%	0	-	probably_damaging(0.962)	tolerated(0.16)	neutral(0.465)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167847723	167847723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018417.4	-1	reviewed	p.S456Y	0.770	240	0%	124	38.7%	0	-	possibly_damaging(0.819)	deleterious(0.04)	deleterious(0.658)	superfamily_Adenylyl and guanylyl cyclase catalytic domain
ADCY10	55811	genome.wustl.edu	37	1	167874304	167874304	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018417.4	-1	reviewed	p.V25	1.000	302	0%	190	42.1%	0	-	-	-	-	NULL
DCAF6	55827	genome.wustl.edu	37	1	167956832	167956832	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018442.2	+1	validated	p.E180*	1.000	97	0%	108	38.9%	5	0%	-	-	-	superfamily_WD40_like
DCAF6	55827	genome.wustl.edu	37	1	168032914	168032914	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018442.2	+1	validated	p.E715*	1.000	73	0%	89	43.8%	12	16.6%	-	-	-	HMMSmart_IQ,superfamily_WD40_like
C1orf114	57821	genome.wustl.edu	37	1	169366610	169366610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021179.1	-1	predicted	p.Q411R	0.999	449	0%	214	49.1%	0	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	NULL
C1orf114	57821	genome.wustl.edu	37	1	169388305	169388305	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021179.1	-1	predicted	p.V387	0.000	818	0%	240	43.3%	0	-	-	-	-	NULL
C1orf114	57821	genome.wustl.edu	37	1	169390981	169390981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021179.1	-1	predicted	p.L230V	0.997	259	0%	88	14.8%	0	-	possibly_damaging(0.94)	tolerated(0.19)	neutral(0.434)	NULL
SLC19A2	10560	genome.wustl.edu	37	1	169439269	169439269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006996.2	-1	reviewed	p.E321D	0.988	184	0%	28	53.6%	5	40%	benign(0.13)	tolerated(0.51)	neutral(0.020)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
SLC19A2	10560	genome.wustl.edu	37	1	169446715	169446715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006996.2	-1	reviewed	p.R162Q	1.000	100	0%	44	36.4%	8	37.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Folate_carrier,superfamily_MFS general substrate transporter
F5	2153	genome.wustl.edu	37	1	169484728	169484728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000130.4	-1	reviewed	p.G2161E	0.996	191	0%	33	39.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
F5	2153	genome.wustl.edu	37	1	169505766	169505766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000130.4	-1	reviewed	p.A1650D	1.000	101	0%	24	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169511451	169511451	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000130.4	-1	reviewed	p.I959	0.147	270	0%	58	46.6%	0	-	-	-	-	NULL
C1orf112	55732	genome.wustl.edu	37	1	169775154	169775154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018186.2	+1	predicted	p.S163Y	0.981	267	0%	241	36.9%	1	0%	probably_damaging(0.976)	tolerated(0.34)	neutral(0.441)	NULL
C1orf112	55732	genome.wustl.edu	37	1	169821982	169821982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018186.2	+1	predicted	p.S806P	0.265	87	0%	26	38.5%	24	58.3%	probably_damaging(0.996)	tolerated(0.26)	deleterious(0.496)	NULL
KIFAP3	22920	genome.wustl.edu	37	1	169951174	169951174	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014970.2	-1	reviewed	p.D579	1.000	132	0%	35	51.4%	28	42.8%	-	-	-	HMMSmart_SM00185,HMMPfam_KAP,superfamily_ARM repeat
KIFAP3	22920	genome.wustl.edu	37	1	169993693	169993693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014970.2	-1	reviewed	p.E296K	1.000	92	0%	46	50%	23	60.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_KAP,superfamily_ARM repeat
C1orf129	80133	genome.wustl.edu	37	1	170928649	170928649	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025063.2	+1	validated	p.E67*	0.004	374	0%	172	44.2%	0	-	-	-	-	NULL
C1orf129	80133	genome.wustl.edu	37	1	170965777	170965777	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025063.2	+1	validated	p.F489L	0.003	330	0%	44	47.7%	0	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
LOC646804	646804	genome.wustl.edu	37	1	171052904	171052904	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929761.3	+1	model	p.L91*	0.235	102	0%	106	43.4%	0	-	-	-	-	PatternScan_RIBOSOMAL_L23
LOC646804	646804	genome.wustl.edu	37	1	171053032	171053032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929761.3	+1	model	p.L134I	0.968	71	0%	104	41.3%	0	-	-	-	-	NULL
FMO3	2328	genome.wustl.edu	37	1	171083297	171083297	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002294.2	+1	reviewed	p.I326	0.979	488	0%	72	38.9%	0	-	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
FMO4	2329	genome.wustl.edu	37	1	171292269	171292269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002022.1	+1	reviewed	p.F87V	0.344	187	0%	53	47.2%	2	100%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
PRRC2C	23215	genome.wustl.edu	37	1	171482169	171482169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015172.3	+1	validated	p.V48I	1.000	320	0%	69	44.9%	10	40%	unknown(0)	-	-	HMMPfam_BAT2_N
PRRC2C	23215	genome.wustl.edu	37	1	171510044	171510044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015172.3	+1	validated	p.D1145Y	0.994	98	0%	103	41.7%	20	35%	unknown(0)	-	-	NULL
VAMP4	8674	genome.wustl.edu	37	1	171688330	171688330	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003762.4	-1	reviewed	p.R49	0.983	135	0%	52	38.5%	2	0%	-	-	-	HMMPfam_Synaptobrevin
C1orf9	51430	genome.wustl.edu	37	1	172522427	172522427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014283.3	+1	validated	p.E69K	0.014	94	0%	70	10%	3	0%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
FASLG	356	genome.wustl.edu	37	1	172634960	172634960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000639.1	+1	reviewed	p.K217T	0.091	435	0%	82	41.5%	0	-	benign(0.03)	tolerated(0.42)	neutral(0.015)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
TNFSF4	7292	genome.wustl.edu	37	1	173155702	173155702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003326.3	-1	reviewed	p.E169*	0.884	70	0%	25	24%	2	0%	-	-	-	HMMPfam_TNF,HMMSmart_SM00207
TNFSF4	7292	genome.wustl.edu	37	1	173155916	173155916	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003326.3	-1	reviewed	p.C97	0.997	198	0%	48	35.4%	1	0%	-	-	-	HMMPfam_TNF,HMMSmart_SM00207,PatternScan_TNF_1,superfamily_TNF-like
SLC9A11	284525	genome.wustl.edu	37	1	173570908	173570908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178527.3	-1	validated	p.S3Y	0.000	267	0%	82	48.8%	0	-	possibly_damaging(0.922)	-	-	NULL
DARS2	55157	genome.wustl.edu	37	1	173797501	173797501	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018122.4	+1	reviewed	p.F86	1.000	140	0%	380	43.2%	16	37.5%	-	-	-	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
RABGAP1L	9910	genome.wustl.edu	37	1	174363157	174363157	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014857.3	+1	validated	p.P528	0.102	247	0%	24	54.2%	2	0%	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
PAPPA2	60676	genome.wustl.edu	37	1	176525494	176525494	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020318.2	+1	validated	p.A12	0.998	150	0%	41	26.8%	0	-	-	-	-	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176668602	176668602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020318.2	+1	validated	p.S1038Y	1.000	234	0%	28	46.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178412006	178412006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170692.2	+1	reviewed	p.I357S	1.000	149	0%	49	16.3%	2	50%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
RASAL2	9462	genome.wustl.edu	37	1	178420747	178420747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170692.2	+1	reviewed	p.E539*	1.000	355	0%	72	11.1%	3	0%	-	-	-	HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP
RASAL2	9462	genome.wustl.edu	37	1	178427461	178427461	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000433130	+1	known	p.P421Q	1.000	87	0%	34	50%	3	66.6%	-	-	-	NULL
C1orf49	84066	genome.wustl.edu	37	1	178485749	178485749	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032126.4	+1	validated	e5-1	1.000	266	0%	187	46%	0	-	-	-	-	-
C1orf49	84066	genome.wustl.edu	37	1	178490028	178490028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000367641	+1	known	p.E188K	0.000	75	1.3%	36	44.4%	0	-	benign(0.002)	-	-	NULL
RALGPS2	55103	genome.wustl.edu	37	1	178854384	178854384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000415888	+1	known	p.S97Y	0.000	39	0%	48	52.1%	0	-	unknown(0)	-	-	NULL
ABL2	27	genome.wustl.edu	37	1	179078423	179078423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007314.3	-1	reviewed	p.R660I	1.000	155	0%	129	45%	3	0%	benign(0.349)	deleterious(0)	deleterious(0.555)	NULL
AXDND1	126859	genome.wustl.edu	37	1	179337961	179337961	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144696.4	+1	validated	p.N42H	0.002	63	0%	87	43.7%	0	-	benign(0.157)	tolerated(0.27)	neutral(0.048)	NULL
AXDND1	126859	genome.wustl.edu	37	1	179347791	179347791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144696.4	+1	validated	p.D132N	1.000	125	0%	89	41.6%	0	-	unknown(0)	deleterious(0.01)	-	NULL
AXDND1	126859	genome.wustl.edu	37	1	179348601	179348601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144696.4	+1	validated	p.L189V	1.000	268	0%	284	42.6%	0	-	unknown(0)	deleterious(0.02)	-	NULL
AXDND1	126859	genome.wustl.edu	37	1	179503895	179503895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144696.4	+1	validated	p.E943D	1.000	95	0%	49	46.9%	0	-	possibly_damaging(0.945)	tolerated(0.64)	neutral(0.393)	NULL
NPHS2	7827	genome.wustl.edu	37	1	179520461	179520461	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014625.2	-1	reviewed	p.E333	0.994	98	0%	19	47.4%	0	-	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180061865	180061865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014810.4	+1	reviewed	p.L2209F	0.014	109	0%	109	56.9%	4	25%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
XPR1	9213	genome.wustl.edu	37	1	180849286	180849286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004736.3	+1	validated	p.D628G	1.000	185	0%	76	47.4%	25	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MR1	3140	genome.wustl.edu	37	1	181022716	181022716	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001531.1	+1	provisional	p.E296	0.000	302	0%	205	38.5%	11	54.5%	-	-	-	superfamily_Immunoglobulin
CACNA1E	777	genome.wustl.edu	37	1	181701631	181701631	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000721.2	+1	reviewed	p.P803	0.001	161	0%	34	47.1%	0	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181731770	181731770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000721.2	+1	reviewed	p.E1556*	1.000	231	0%	98	16.3%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181731789	181731789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000721.2	+1	reviewed	p.S1562N	1.000	204	0%	91	50.5%	1	100%	benign(0.048)	tolerated(0.5)	neutral(0.013)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181767657	181767657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000721.2	+1	reviewed	p.S2167Y	0.969	55	0%	37	51.4%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
ZNF648	127665	genome.wustl.edu	37	1	182026148	182026148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009992.1	-1	provisional	p.K333R	1.000	191	0%	40	40%	0	-	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	superfamily_SSF57667
RGSL1	353299	genome.wustl.edu	37	1	182457447	182457447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137669.1	+1	validated	p.L487I	0.998	352	0%	199	48.7%	0	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
RGSL1	353299	genome.wustl.edu	37	1	182491217	182491217	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137669.1	+1	validated	p.L635R	0.000	72	0%	55	49.1%	0	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
RNASEL	6041	genome.wustl.edu	37	1	182554463	182554463	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021133.2	-1	reviewed	p.I493	1.000	262	0%	103	17.5%	1	0%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LAMC2	3918	genome.wustl.edu	37	1	183190057	183190057	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005562.2	+1	reviewed	p.E201*	0.077	96	0%	73	46.6%	10	0%	-	-	-	NULL
LAMC2	3918	genome.wustl.edu	37	1	183194835	183194835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005562.2	+1	reviewed	p.R349Q	1.000	82	0%	55	54.5%	11	18.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Laminin_B,HMMSmart_SM00281
LAMC2	3918	genome.wustl.edu	37	1	183197685	183197685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005562.2	+1	reviewed	p.Y549D	0.080	167	0%	50	40%	7	0%	possibly_damaging(0.667)	deleterious(0.03)	deleterious(0.601)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin
RGL1	23179	genome.wustl.edu	37	1	183711345	183711345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015149.3	+1	validated	p.L18R	0.988	279	0%	43	37.2%	1	0%	benign(0.422)	deleterious(0)	deleterious(0.582)	NULL
GLT25D2	23127	genome.wustl.edu	37	1	183938571	183938571	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015101.2	-1	validated	p.R222*	0.749	103	0%	45	33.3%	0	-	-	-	-	NULL
FAM129A	116496	genome.wustl.edu	37	1	184764766	184764766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052966.2	-1	validated	p.A711V	0.896	218	0.5%	75	38.7%	9	44.4%	benign(0.003)	tolerated(0.09)	neutral(0.296)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184765073	184765073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052966.2	-1	validated	p.L609M	0.000	86	0%	56	41.1%	13	38.4%	benign(0.267)	tolerated(0.22)	neutral(0.070)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184800984	184800984	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052966.2	-1	validated	p.I238	0.999	190	0%	88	37.5%	3	100%	-	-	-	NULL
TRMT1L	81627	genome.wustl.edu	37	1	185089291	185089291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030934.4	-1	reviewed	p.L688I	1.000	143	0%	56	57.1%	11	36.3%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_TRM
TRMT1L	81627	genome.wustl.edu	37	1	185093036	185093036	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030934.4	-1	reviewed	p.F592C	0.348	152	0%	132	43.2%	15	46.6%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_TRM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SWT1	54823	genome.wustl.edu	37	1	185173960	185173960	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105518.1	+1	validated	p.E600*	1.000	91	0%	96	49%	1	0%	-	-	-	NULL
IVNS1ABP	10625	genome.wustl.edu	37	1	185270588	185270588	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006469.4	-1	validated	p.I291	1.000	408	0%	73	53.4%	120	50%	-	-	-	NULL
HMCN1	83872	genome.wustl.edu	37	1	185902937	185902937	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031935.2	+1	reviewed	p.S603	0.017	66	0%	22	59.1%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185956624	185956624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031935.2	+1	reviewed	p.T999N	0.295	134	0.7%	47	40.4%	2	50%	benign(0.273)	tolerated(0.08)	neutral(0.329)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186039797	186039797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031935.2	+1	reviewed	p.E2683*	1.000	154	0%	29	44.8%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186083141	186083141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031935.2	+1	reviewed	p.S3721I	0.995	80	0%	50	40%	0	-	possibly_damaging(0.832)	tolerated(0.18)	neutral(0.373)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186086602	186086602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031935.2	+1	reviewed	p.I3899V	1.000	131	0%	36	33.3%	1	0%	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186122987	186122987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031935.2	+1	reviewed	p.T5042A	1.000	164	0%	54	38.9%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
PRG4	10216	genome.wustl.edu	37	1	186276792	186276792	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005807.3	+1	reviewed	p.E647	0.000	14	0%	89	44.9%	0	-	-	-	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186277301	186277301	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005807.3	+1	reviewed	p.K817T	0.002	94	0%	243	42%	0	-	unknown(0)	tolerated(0.21)	-	NULL
TPR	7175	genome.wustl.edu	37	1	186315345	186315345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003292.2	-1	reviewed	p.K1006N	1.000	345	0%	331	45%	16	68.7%	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	superfamily_Prefoldin
TPR	7175	genome.wustl.edu	37	1	186331979	186331979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003292.2	-1	reviewed	p.K229T	1.000	94	0%	85	51.8%	9	77.7%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
PTGS2	5743	genome.wustl.edu	37	1	186643805	186643805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000963.2	-1	reviewed	p.R499W	0.982	157	0.6%	57	45.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PLA2G4A	5321	genome.wustl.edu	37	1	186915853	186915853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024420.2	+1	reviewed	p.F373C	1.000	315	0%	72	56.9%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4A	5321	genome.wustl.edu	37	1	186948476	186948476	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024420.2	+1	reviewed	p.E664*	1.000	271	0%	174	44.8%	14	7.1%	-	-	-	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
UCHL5	51377	genome.wustl.edu	37	1	192993052	192993052	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000420791	-1	known	p.L109S	1.000	137	0%	50	54%	45	60%	-	-	-	superfamily_Cysteine proteinases
TROVE2	6738	genome.wustl.edu	37	1	193046073	193046073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004600.5	+1	validated	p.A327T	1.000	121	0%	111	11.7%	15	6.6%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_TROVE
CDC73	79577	genome.wustl.edu	37	1	193116996	193116996	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024529.4	+1	reviewed	e8-1	1.000	51	0%	32	43.8%	0	-	-	-	-	-
B3GALT2	8707	genome.wustl.edu	37	1	193150200	193150200	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003783.3	-1	reviewed	p.E165*	1.000	204	0%	136	41.9%	0	-	-	-	-	HMMPfam_Galactosyl_T
B3GALT2	8707	genome.wustl.edu	37	1	193150683	193150683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003783.3	-1	reviewed	p.W4R	1.000	68	0%	24	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196397313	196397313	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198503.2	-1	validated	p.V302	1.000	174	0%	25	48%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
CFH	3075	genome.wustl.edu	37	1	196648828	196648828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000186.3	+1	reviewed	p.R232Q	0.967	146	0%	29	34.5%	6	33.3%	probably_damaging(0.974)	tolerated(0.2)	neutral(0.465)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFH	3075	genome.wustl.edu	37	1	196694262	196694262	+	Missense_Mutation	SNP	G	G	A	rs76405615		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000186.3	+1	reviewed	p.E570K	0.002	70	0%	23	43.5%	9	0%	benign(0)	tolerated(0.99)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFH	3075	genome.wustl.edu	37	1	196712669	196712669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000186.3	+1	reviewed	p.R1074H	0.409	532	0.2%	306	38.9%	13	0%	benign(0.014)	tolerated(0.24)	neutral(0.038)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFHR3	10878	genome.wustl.edu	37	1	196757424	196757424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021023.5	+1	reviewed	p.E170G	0.000	40	0%	61	55.7%	0	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR4	10877	genome.wustl.edu	37	1	196871648	196871648	+	Silent	SNP	C	C	A	rs78951215	byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006684.2	+1	validated	p.S53	0.004	149	0%	85	38.8%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197024886	197024886	+	Missense_Mutation	SNP	C	C	T	rs192220037	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001994.2	-1	reviewed	p.R438H	0.000	163	0.6%	19	36.8%	0	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197026500	197026500	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001994.2	-1	reviewed	p.E301*	0.978	442	0%	59	52.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
F13B	2165	genome.wustl.edu	37	1	197030959	197030959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001994.2	-1	reviewed	p.L136I	1.000	181	0%	40	37.5%	0	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197060155	197060155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.R3154I	0.972	131	0%	32	43.8%	21	38%	possibly_damaging(0.757)	tolerated(0.24)	neutral(0.317)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197061113	197061113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.R3123I	0.851	168	0%	33	42.4%	20	40%	possibly_damaging(0.946)	tolerated(0.07)	deleterious(0.709)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197069914	197069914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.K2823Q	0.035	50	0%	11	54.5%	19	47.3%	benign(0.245)	tolerated(0.28)	neutral(0.057)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197072778	197072778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.R1868I	0.345	92	0%	20	35%	4	25%	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197098325	197098325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.E918K	1.000	134	0%	132	41.7%	5	40%	benign(0.227)	tolerated(0.16)	neutral(0.082)	superfamily_Calponin-homology domain CH-domain
ASPM	259266	genome.wustl.edu	37	1	197099174	197099174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.E834K	1.000	172	0%	74	43.2%	3	33.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_Calponin-homology domain CH-domain
ASPM	259266	genome.wustl.edu	37	1	197101428	197101428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.R825Q	1.000	63	0%	52	53.8%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Calponin-homology domain CH-domain
ASPM	259266	genome.wustl.edu	37	1	197104301	197104301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.E700K	1.000	122	0%	93	55.9%	1	100%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
ASPM	259266	genome.wustl.edu	37	1	197108954	197108954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018136.4	-1	reviewed	p.K657Q	0.019	316	0%	373	47.5%	6	33.3%	benign(0.045)	tolerated(0.27)	neutral(0.036)	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197141301	197141301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194314.2	-1	validated	p.R688Q	1.000	41	0%	16	50%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB41	360023	genome.wustl.edu	37	1	197145768	197145768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194314.2	-1	validated	p.R602I	1.000	258	0%	43	46.5%	2	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_C2H2 and C2HC zinc fingers
ZBTB41	360023	genome.wustl.edu	37	1	197168757	197168757	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194314.2	-1	validated	p.E283*	0.175	197	0%	158	45.6%	1	100%	-	-	-	NULL
CRB1	23418	genome.wustl.edu	37	1	197390891	197390891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201253.1	+1	reviewed	p.D645Y	1.000	135	0%	47	46.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CRB1	23418	genome.wustl.edu	37	1	197398735	197398735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201253.1	+1	reviewed	p.G945*	1.000	125	0%	41	46.3%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
CRB1	23418	genome.wustl.edu	37	1	197403907	197403907	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201253.1	+1	reviewed	p.E972*	1.000	82	0%	35	51.4%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
DENND1B	163486	genome.wustl.edu	37	1	197641221	197641221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142795.1	-1	validated	p.R81I	1.000	177	0%	40	37.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_uDENN,HMMSmart_SM00800
NEK7	140609	genome.wustl.edu	37	1	198231750	198231750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133494.2	+1	validated	p.E82*	1.000	213	0%	56	44.6%	4	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PTPRC	5788	genome.wustl.edu	37	1	198678923	198678923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002838.3	+1	reviewed	p.A379T	0.000	115	0%	64	42.2%	2	0%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
PTPRC	5788	genome.wustl.edu	37	1	198721736	198721736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002838.3	+1	reviewed	p.R1113Q	0.292	138	0%	13	61.5%	7	0%	possibly_damaging(0.881)	tolerated(0.36)	neutral(0.364)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRC	5788	genome.wustl.edu	37	1	198723480	198723480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002838.3	+1	reviewed	p.F1196V	1.000	260	0%	39	51.3%	8	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
KIF14	9928	genome.wustl.edu	37	1	200534238	200534238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014875.2	-1	validated	p.E1344K	0.646	65	0%	83	44.6%	5	20%	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	NULL
KIF14	9928	genome.wustl.edu	37	1	200587830	200587830	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014875.2	-1	validated	p.N8H	0.000	75	0%	123	12.2%	1	0%	benign(0.284)	deleterious(0)	deleterious(0.531)	NULL
DDX59	83479	genome.wustl.edu	37	1	200635845	200635845	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031725.4	-1	validated	p.K8N	1.000	241	0%	182	44%	9	66.6%	possibly_damaging(0.766)	deleterious(0.02)	deleterious(0.667)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200817780	200817780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203459.1	+1	validated	p.S628L	0.998	139	0%	69	58%	12	58.3%	possibly_damaging(0.871)	tolerated(0.36)	neutral(0.359)	NULL
KIF21B	23046	genome.wustl.edu	37	1	200944036	200944036	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017596.2	-1	provisional	p.I1527	1.000	257	0%	60	38.3%	2	0%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CACNA1S	779	genome.wustl.edu	37	1	201044714	201044714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000069.2	-1	reviewed	p.M619I	0.731	209	0%	56	10.7%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1S	779	genome.wustl.edu	37	1	201057036	201057036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000069.2	-1	reviewed	p.E308K	1.000	200	0%	128	46.1%	0	-	benign(0.01)	tolerated(0.31)	neutral(0.028)	HMMPfam_Ion_trans,superfamily_SSF81324
PKP1	5317	genome.wustl.edu	37	1	201287840	201287840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000299.2	+1	reviewed	p.F383L	1.000	176	0%	35	42.9%	0	-	probably_damaging(0.996)	tolerated(0.29)	deleterious(0.491)	superfamily_ARM repeat
TNNT2	7139	genome.wustl.edu	37	1	201336908	201336908	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000364.2	-1	reviewed	p.E64*	0.957	563	0%	586	44.9%	0	-	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201759832	201759832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020443.4	+1	reviewed	p.R1087C	1.000	408	0%	210	45.2%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LMOD1	25802	genome.wustl.edu	37	1	201869334	201869334	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012134.2	-1	reviewed	p.E269D	0.000	598	0%	280	46.8%	3	0%	benign(0.19)	tolerated(0.46)	neutral(0.030)	HMMPfam_Tropomodulin
LMOD1	25802	genome.wustl.edu	37	1	201915236	201915236	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012134.2	-1	reviewed	p.K78T	0.991	113	0%	71	36.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Tropomodulin
PPP1R12B	4660	genome.wustl.edu	37	1	202464699	202464699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032105.2	+1	reviewed	p.E779D	0.305	152	0%	48	45.8%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
PPP1R12B	4660	genome.wustl.edu	37	1	202532039	202532039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032105.2	+1	reviewed	p.D881Y	1.000	29	0%	15	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CHIT1	1118	genome.wustl.edu	37	1	203194802	203194802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003465.2	-1	reviewed	p.K84N	0.928	262	0%	102	42.2%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
RBBP5	5929	genome.wustl.edu	37	1	205069347	205069347	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005057.2	-1	reviewed	p.E229*	1.000	242	0%	129	34.9%	9	11.1%	-	-	-	superfamily_WD40 repeat-like
NUAK2	81788	genome.wustl.edu	37	1	205277343	205277343	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030952.1	-1	provisional	p.R174*	1.000	98	0%	84	46.4%	30	30%	-	-	-	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
SLC41A1	254428	genome.wustl.edu	37	1	205767101	205767101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173854.4	-1	validated	p.R308Q	1.000	89	0%	25	44%	19	36.8%	benign(0.026)	tolerated(0.32)	neutral(0.025)	NULL
PM20D1	148811	genome.wustl.edu	37	1	205799469	205799469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152491.4	-1	validated	p.N442Y	0.968	564	0%	249	39.8%	0	-	probably_damaging(0.953)	deleterious(0.03)	deleterious(0.761)	HMMPfam_Peptidase_M20,superfamily_Zn-dependent exopeptidases
SLC26A9	115019	genome.wustl.edu	37	1	205884310	205884310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_134325.2	-1	reviewed	p.E792K	0.010	81	0%	62	50%	2	50%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
CTSE	1510	genome.wustl.edu	37	1	206318410	206318410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001910.2	+1	reviewed	p.F56L	0.354	104	0%	40	55%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_Pept_Aspartic
RASSF5	83593	genome.wustl.edu	37	1	206760161	206760161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182663.2	+1	reviewed	p.D370N	1.000	255	0%	136	49.3%	1	0%	benign(0.29)	tolerated(0.11)	neutral(0.361)	NULL
IL19	29949	genome.wustl.edu	37	1	207010134	207010134	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153758.1	+1	reviewed	p.E81*	0.074	264	0%	151	45.7%	0	-	-	-	-	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10
PIGR	5284	genome.wustl.edu	37	1	207105051	207105051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002644.3	-1	reviewed	p.S702L	0.006	339	0%	185	40%	0	-	benign(0.002)	tolerated(0.31)	neutral(0.027)	NULL
PIGR	5284	genome.wustl.edu	37	1	207105098	207105098	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002644.3	-1	reviewed	p.F686	0.004	286	0.3%	164	45.7%	0	-	-	-	-	NULL
C1orf116	79098	genome.wustl.edu	37	1	207198394	207198394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023938.5	-1	validated	p.D41N	1.000	92	0%	33	51.5%	2	50%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
PFKFB2	5208	genome.wustl.edu	37	1	207245637	207245637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006212.2	+1	reviewed	p.R480I	1.000	104	0%	59	44.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C4BPA	722	genome.wustl.edu	37	1	207314502	207314502	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000715.3	+1	reviewed	p.S442*	0.000	248	0%	113	44.2%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C4BPA	722	genome.wustl.edu	37	1	207314519	207314519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000715.3	+1	reviewed	p.E448*	0.000	224	0%	90	47.8%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CD55	1604	genome.wustl.edu	37	1	207497932	207497932	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114752.1	+1	reviewed	p.N105	0.000	118	0%	74	51.4%	17	29.4%	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CD55	1604	genome.wustl.edu	37	1	207500107	207500107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114752.1	+1	reviewed	p.F197V	0.002	576	0%	283	44.2%	24	29.1%	benign(0)	tolerated(0.77)	neutral(0.001)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR2	1380	genome.wustl.edu	37	1	207640078	207640078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006658.2	+1	reviewed	p.S89Y	0.001	102	0%	62	45.2%	0	-	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	superfamily_Complement_control_module
CR1	1378	genome.wustl.edu	37	1	207737528	207737528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000651.4	+1	reviewed	p.F1272C	0.003	647	0%	320	35%	0	-	probably_damaging(0.992)	tolerated(0.18)	deleterious(0.504)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207755271	207755271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000651.4	+1	reviewed	p.L1742S	0.901	427	0.2%	143	38.5%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207760774	207760774	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000651.4	+1	reviewed	p.T1858	0.000	434	0%	127	36.2%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207785143	207785143	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000651.4	+1	reviewed	p.A2139	0.000	209	0%	98	49%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
LOC642587	642587	genome.wustl.edu	37	1	209605600	209605600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001104548.1	+1	validated	p.S72L	0.005	68	0%	23	43.5%	7	14.2%	-	-	-	NULL
LAMB3	3914	genome.wustl.edu	37	1	209789827	209789827	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000228.2	-1	reviewed	p.D1124A	1.000	294	0%	142	50.7%	116	50%	benign(0.047)	deleterious(0)	neutral(0.448)	NULL
HSD11B1	3290	genome.wustl.edu	37	1	209880338	209880338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005525.2	+1	reviewed	p.L128I	0.000	286	0%	48	45.8%	2	0%	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
IRF6	3664	genome.wustl.edu	37	1	209969815	209969815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006147.2	-1	reviewed	p.A86V	1.000	213	0%	55	36.4%	44	56.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRF,HMMSmart_IRF,superfamily_SSF46785
DIEXF	27042	genome.wustl.edu	37	1	210004186	210004186	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014388.5	+1	validated	p.S62	0.998	86	0%	88	47.7%	7	57.1%	-	-	-	NULL
SYT14	255928	genome.wustl.edu	37	1	210187097	210187097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153262.2	+1	validated	p.L61I	1.000	145	0%	167	44.3%	0	-	benign(0.244)	deleterious(0.02)	neutral(0.408)	NULL
SYT14	255928	genome.wustl.edu	37	1	210334310	210334310	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153262.2	+1	validated	p.E531*	1.000	183	0%	79	53.2%	0	-	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SERTAD4	56256	genome.wustl.edu	37	1	210415035	210415035	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019605.3	+1	validated	p.E142*	1.000	78	0%	76	36.8%	3	33.3%	-	-	-	HMMPfam_SERTA
KCNH1	3756	genome.wustl.edu	37	1	210857458	210857458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172362.2	-1	reviewed	p.D712G	0.998	105	0%	32	46.9%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
KCNH1	3756	genome.wustl.edu	37	1	210948718	210948718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172362.2	-1	reviewed	p.L695R	1.000	333	0%	94	53.2%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
KCNH1	3756	genome.wustl.edu	37	1	211280624	211280624	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172362.2	-1	reviewed	p.E59*	1.000	222	0%	84	52.4%	0	-	-	-	-	superfamily_PYP-like sensor domain (PAS domain)
TRAF5	7188	genome.wustl.edu	37	1	211545547	211545547	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033910.2	+1	reviewed	p.R393*	1.000	121	0%	56	42.9%	7	14.2%	-	-	-	NULL
LPGAT1	9926	genome.wustl.edu	37	1	211956832	211956832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014873.2	-1	validated	p.R156C	1.000	112	0%	78	42.3%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
INTS7	25896	genome.wustl.edu	37	1	212156024	212156024	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015434.2	-1	provisional	p.E376*	1.000	113	0%	58	46.6%	7	14.2%	-	-	-	superfamily_ARM repeat
INTS7	25896	genome.wustl.edu	37	1	212180005	212180005	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015434.2	-1	provisional	p.H285	0.995	249	0.4%	147	54.4%	8	75%	-	-	-	superfamily_ARM repeat
INTS7	25896	genome.wustl.edu	37	1	212193518	212193518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015434.2	-1	provisional	p.R106I	1.000	95	0%	138	31.2%	10	60%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_ARM repeat
PPP2R5A	5525	genome.wustl.edu	37	1	212502563	212502563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006243.2	+1	reviewed	p.D90N	1.000	107	0%	160	42.5%	2	100%	possibly_damaging(0.862)	tolerated(0.32)	neutral(0.357)	HMMPfam_B56,superfamily_ARM repeat
PPP2R5A	5525	genome.wustl.edu	37	1	212530307	212530307	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006243.2	+1	reviewed	p.E332*	1.000	99	0%	169	42.6%	16	6.2%	-	-	-	HMMPfam_B56,superfamily_ARM repeat
PPP2R5A	5525	genome.wustl.edu	37	1	212530541	212530541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006243.2	+1	reviewed	p.L381I	1.000	164	0%	251	45.8%	16	50%	benign(0.003)	tolerated(0.21)	neutral(0.044)	HMMPfam_B56,superfamily_ARM repeat
ANGEL2	90806	genome.wustl.edu	37	1	213178721	213178721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144567.3	-1	validated	p.F263C	1.000	183	0%	80	13.8%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
RPS6KC1	26750	genome.wustl.edu	37	1	213415540	213415540	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012424.3	+1	validated	p.Q907	0.989	122	0%	29	55.2%	13	30.7%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PROX1	5629	genome.wustl.edu	37	1	214170398	214170398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002763.3	+1	provisional	p.R174W	1.000	104	0%	57	57.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Prox1
PROX1	5629	genome.wustl.edu	37	1	214170988	214170988	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002763.3	+1	provisional	p.V370	0.997	142	0%	58	60.3%	1	100%	-	-	-	HMMPfam_Prox1
SMYD2	56950	genome.wustl.edu	37	1	214492308	214492308	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020197.2	+1	validated	p.L172	0.006	136	0%	63	34.9%	94	39.3%	-	-	-	HMMSmart_SET,superfamily_SSF82199
PTPN14	5784	genome.wustl.edu	37	1	214542937	214542937	+	Missense_Mutation	SNP	C	C	T	rs181559516	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005401.4	-1	reviewed	p.R1045Q	1.000	301	0%	91	42.9%	18	61.1%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN14	5784	genome.wustl.edu	37	1	214549668	214549668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005401.4	-1	reviewed	p.A934V	0.054	403	0.2%	326	46%	21	61.9%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
CENPF	1063	genome.wustl.edu	37	1	214813457	214813457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016343.3	+1	reviewed	p.E592D	0.926	18	0%	28	46.4%	17	47%	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	NULL
CENPF	1063	genome.wustl.edu	37	1	214814026	214814026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016343.3	+1	reviewed	p.R782I	0.024	62	0%	34	35.3%	17	29.4%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	superfamily_Spectrin repeat
CENPF	1063	genome.wustl.edu	37	1	214816042	214816042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016343.3	+1	reviewed	p.R1454I	0.443	129	0%	40	10%	44	11.3%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
CENPF	1063	genome.wustl.edu	37	1	214818646	214818646	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016343.3	+1	reviewed	p.K1911N	0.134	41	0%	27	48.1%	88	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
KCTD3	51133	genome.wustl.edu	37	1	215759899	215759899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016121.3	+1	validated	p.E230K	1.000	275	0%	93	43%	40	35%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	superfamily_WD40 repeat-like
USH2A	7399	genome.wustl.edu	37	1	215844359	215844359	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206933.2	-1	reviewed	p.S4696	0.021	491	0%	121	40.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215844486	215844486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206933.2	-1	reviewed	p.S4654Y	0.591	360	0%	89	42.7%	0	-	possibly_damaging(0.669)	deleterious(0.04)	deleterious(0.586)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215932062	215932062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206933.2	-1	reviewed	p.G3755V	0.992	315	0%	127	47.2%	0	-	possibly_damaging(0.862)	tolerated(0.24)	neutral(0.370)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215933149	215933149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206933.2	-1	reviewed	p.S3695Y	1.000	159	0%	64	40.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216380715	216380715	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206933.2	-1	reviewed	p.L1072	0.904	110	0%	60	33.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
USH2A	7399	genome.wustl.edu	37	1	216405466	216405466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206933.2	-1	reviewed	p.S941Y	1.000	125	0%	10	70%	0	-	possibly_damaging(0.676)	deleterious(0.01)	deleterious(0.646)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
USH2A	7399	genome.wustl.edu	37	1	216424432	216424432	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206933.2	-1	reviewed	p.G660	1.000	222	0%	38	47.4%	0	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
EPRS	2058	genome.wustl.edu	37	1	220154160	220154160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004446.2	-1	reviewed	p.R1165C	1.000	149	0%	47	44.7%	104	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
EPRS	2058	genome.wustl.edu	37	1	220170338	220170338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004446.2	-1	reviewed	p.E843G	1.000	160	0%	120	45.8%	42	42.8%	benign(0.014)	tolerated(0.16)	neutral(0.060)	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_S15/NS1_bind
IARS2	55699	genome.wustl.edu	37	1	220315228	220315228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018060.3	+1	validated	p.S833Y	0.840	349	0%	253	45.1%	104	47.1%	possibly_damaging(0.562)	tolerated(0.25)	neutral(0.229)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1
RAB3GAP2	25782	genome.wustl.edu	37	1	220363446	220363446	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012414.3	-1	reviewed	p.K558	1.000	449	0%	97	45.4%	6	16.6%	-	-	-	NULL
MARK1	4139	genome.wustl.edu	37	1	220805570	220805570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018650.3	+1	validated	p.R346Q	1.000	56	0%	42	50%	0	-	benign(0.093)	tolerated(0.11)	neutral(0.279)	HMMPfam_UBA,HMMSmart_SM00165
TAF1A	9015	genome.wustl.edu	37	1	222757471	222757471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005681.2	-1	reviewed	p.E97G	1.000	280	0%	89	41.6%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SUSD4	55061	genome.wustl.edu	37	1	223402555	223402555	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017982.3	-1	validated	p.V300	0.999	103	0%	37	51.4%	5	60%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CAPN2	824	genome.wustl.edu	37	1	223947010	223947010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001748.4	+1	reviewed	p.F452L	1.000	60	0%	51	49%	56	41%	probably_damaging(0.953)	deleterious(0.03)	deleterious(0.761)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
NVL	4931	genome.wustl.edu	37	1	224505619	224505619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002533.2	-1	validated	p.R49*	0.996	98	0%	289	41.9%	9	33.3%	-	-	-	NULL
WDR26	80232	genome.wustl.edu	37	1	224619245	224619245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025160.6	-1	reviewed	p.H40Q	1.000	75	0%	172	45.3%	53	41.5%	possibly_damaging(0.882)	tolerated(0.24)	neutral(0.382)	HMMSmart_SM00668
DNAH14	127602	genome.wustl.edu	37	1	225211336	225211336	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001373.1	+1	validated	p.I376S	0.006	92	0%	47	40.4%	1	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225306929	225306929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001373.1	+1	validated	p.R1367C	0.994	49	0%	20	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH14	127602	genome.wustl.edu	37	1	225454346	225454346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001373.1	+1	validated	p.L2466I	0.000	113	0%	91	51.6%	2	50%	benign(0.003)	tolerated(0.98)	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH14	127602	genome.wustl.edu	37	1	225490991	225490991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001373.1	+1	validated	p.A2829V	0.995	171	0%	25	52%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM63A	9725	genome.wustl.edu	37	1	226059726	226059726	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014698.2	-1	validated	p.S98	0.000	105	0%	110	32.7%	10	70%	-	-	-	NULL
PSEN2	5664	genome.wustl.edu	37	1	227077799	227077799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000447.2	+1	reviewed	p.R284I	1.000	112	0%	89	14.6%	37	10.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Presenilin,HMMSmart_SM00730
CDC42BPA	8476	genome.wustl.edu	37	1	227333197	227333197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003607.3	-1	reviewed	p.K379T	1.000	154	0%	103	47.6%	4	50%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMSmart_S_TK_X,HMMPfam_Pkinase_C
ZNF678	339500	genome.wustl.edu	37	1	227842637	227842637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178549.3	+1	validated	p.R229I	0.072	73	0%	19	36.8%	4	50%	benign(0.009)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF678	339500	genome.wustl.edu	37	1	227842973	227842973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178549.3	+1	validated	p.R341I	1.000	47	0%	10	50%	4	25%	possibly_damaging(0.449)	tolerated(0.13)	neutral(0.399)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF678	339500	genome.wustl.edu	37	1	227843225	227843225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178549.3	+1	validated	p.R425I	0.309	40	0%	15	46.7%	2	50%	benign(0.118)	tolerated(0.17)	neutral(0.068)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF678	339500	genome.wustl.edu	37	1	227843477	227843477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178549.3	+1	validated	p.R509I	0.979	69	0%	20	50%	0	-	benign(0.005)	tolerated(0.12)	neutral(0.261)	superfamily_SSF57667
PRSS38	339501	genome.wustl.edu	37	1	228005040	228005040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183062.2	+1	validated	p.G148R	0.452	197	0%	74	47.3%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
OBSCN	84033	genome.wustl.edu	37	1	228452003	228452003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098623.1	+1	reviewed	p.L1591P	1.000	29	0%	33	27.3%	4	75%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228479615	228479615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098623.1	+1	reviewed	p.F3452L	1.000	87	0%	72	48.6%	1	0%	probably_damaging(0.964)	tolerated(0.07)	deleterious(0.726)	HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228521025	228521025	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098623.1	+1	reviewed	e58+1	1.000	7	0.000	13	0.615	0	-	-	-	-	-
OBSCN	84033	genome.wustl.edu	37	1	228554146	228554146	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098623.1	+1	reviewed	p.E6408*	0.046	7	0.000	9	0.667	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TRIM11	81559	genome.wustl.edu	37	1	228582509	228582509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145214.2	-1	reviewed	p.S435L	0.966	44	0%	30	63.3%	34	67.6%	benign(0.087)	deleterious(0.01)	neutral(0.412)	HMMPfam_SPRY,HMMSmart_SM00449
HIST3H3	8290	genome.wustl.edu	37	1	228613019	228613019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003493.2	-1	reviewed	p.R3Q	0.971	99	0%	16	56.2%	0	-	probably_damaging(0.996)	-	-	superfamily_Histone-fold
HIST3H2BB	128312	genome.wustl.edu	37	1	228645961	228645961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175055.2	+1	reviewed	p.K44R	1.000	175	0%	117	45.3%	0	-	possibly_damaging(0.61)	tolerated(0.06)	deleterious(0.534)	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
LOC100288545	100288545	genome.wustl.edu	37	1	229567218	229567218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342173.1	+1	model	p.E30D	0.975	95	0%	51	54.9%	0	-	-	-	-	NULL
NUP133	55746	genome.wustl.edu	37	1	229600399	229600399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018230.2	-1	reviewed	p.Q841H	1.000	119	0%	86	38.4%	47	46.8%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Nup133
URB2	9816	genome.wustl.edu	37	1	229772193	229772193	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014777.2	+1	provisional	p.Y611*	0.968	45	0%	79	40.5%	5	60%	-	-	-	NULL
PGBD5	79605	genome.wustl.edu	37	1	230459357	230459357	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024554.3	-1	reviewed	p.I493	0.998	220	0%	74	36.5%	2	0%	-	-	-	NULL
COG2	22796	genome.wustl.edu	37	1	230804444	230804444	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007357.2	+1	reviewed	p.L170	1.000	381	0%	102	43.1%	13	38.4%	-	-	-	NULL
CAPN9	10753	genome.wustl.edu	37	1	230914723	230914723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006615.2	+1	reviewed	p.A320S	0.992	47	0%	22	50%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
C1orf124	83932	genome.wustl.edu	37	1	231488899	231488899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032018.4	+1	validated	p.F421C	0.799	32	0%	53	43.4%	12	83.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TSNAX	7257	genome.wustl.edu	37	1	231696939	231696939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005999.2	+1	reviewed	p.M145V	1.000	136	0%	128	13.3%	36	22.2%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Translin,superfamily_Translin
SIPA1L2	57568	genome.wustl.edu	37	1	232600661	232600661	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020808.3	-1	validated	p.E915D	1.000	77	0%	49	32.7%	4	50%	probably_damaging(0.995)	tolerated(0.51)	neutral(0.467)	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232941127	232941127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019090.2	+1	validated	p.L120I	0.995	47	0%	50	50%	0	-	unknown(0)	-	-	NULL
NTPCR	84284	genome.wustl.edu	37	1	233092191	233092191	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032324.1	+1	provisional	e3+2	1.000	295	0%	103	32%	6	100%	-	-	-	-
PCNXL2	80003	genome.wustl.edu	37	1	233225913	233225913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014801.3	-1	provisional	p.T1324A	0.885	238	0%	113	38.1%	1	100%	benign(0)	tolerated(1)	-	NULL
KIAA1804	84451	genome.wustl.edu	37	1	233489679	233489679	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032435.2	+1	validated	p.E371	1.000	301	0%	58	48.3%	6	83.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KCNK1	3775	genome.wustl.edu	37	1	233807105	233807105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002245.3	+1	reviewed	p.F280L	1.000	117	0%	58	41.4%	22	50%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	superfamily_SSF81324
SLC35F3	148641	genome.wustl.edu	37	1	234458805	234458805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173508.2	+1	provisional	p.A430V	1.000	316	0%	110	43.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345026	235345026	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016374.5	-1	reviewed	p.E1070*	1.000	252	0%	156	25.6%	12	8.3%	-	-	-	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345390	235345390	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016374.5	-1	reviewed	p.D948E	0.993	86	0%	94	39.4%	10	70%	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	NULL
TBCE	6905	genome.wustl.edu	37	1	235602124	235602124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079515.1	+1	reviewed	p.R386Q	0.027	119	0%	89	48.3%	32	37.5%	benign(0.004)	tolerated(0.07)	neutral(0.319)	superfamily_SSF52047
GNG4	2786	genome.wustl.edu	37	1	235747095	235747095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098721.1	-1	validated	p.Q15R	0.998	143	0%	104	45.2%	0	-	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
LYST	1130	genome.wustl.edu	37	1	235907458	235907458	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000081.2	-1	reviewed	e28-1	1.000	58	0%	56	44.6%	0	-	-	-	-	-
LYST	1130	genome.wustl.edu	37	1	235969732	235969732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000081.2	-1	reviewed	p.L902I	1.000	158	0%	44	43.2%	1	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
LYST	1130	genome.wustl.edu	37	1	235971814	235971814	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000081.2	-1	reviewed	p.C768	1.000	86	0%	33	51.5%	1	100%	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235972728	235972728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000081.2	-1	reviewed	p.E464K	0.991	77	0%	45	57.8%	2	0%	probably_damaging(0.99)	tolerated(0.21)	deleterious(0.485)	NULL
HEATR1	55127	genome.wustl.edu	37	1	236730153	236730153	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018072.4	-1	validated	p.E1367D	0.956	91	0%	44	54.5%	12	41.6%	benign(0.001)	tolerated(0.16)	neutral(0.059)	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236739568	236739568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018072.4	-1	validated	p.S1012F	1.000	177	0%	127	36.2%	5	80%	possibly_damaging(0.855)	deleterious(0.01)	deleterious(0.736)	superfamily_ARM-type_fold
ACTN2	88	genome.wustl.edu	37	1	236924393	236924393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103.2	+1	reviewed	p.D816N	1.000	186	0%	68	38.2%	0	-	possibly_damaging(0.524)	tolerated(0.12)	neutral(0.437)	HMMSmart_SM00054,superfamily_EF-hand
RYR2	6262	genome.wustl.edu	37	1	237532833	237532833	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	e6-1	1.000	334	0%	163	38%	0	-	-	-	-	-
RYR2	6262	genome.wustl.edu	37	1	237754222	237754222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	p.E1364*	1.000	135	0%	61	39.3%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237780711	237780711	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	p.V1947	0.050	132	0%	43	44.2%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237863651	237863651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	p.R3084L	1.000	86	0%	30	46.7%	0	-	possibly_damaging(0.869)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237880546	237880546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	p.R3458W	0.975	197	0%	49	42.9%	0	-	probably_damaging(0.962)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237947912	237947912	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	p.S4300	0.876	172	0%	35	51.4%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237949284	237949284	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	p.E4426*	1.000	293	0%	110	44.5%	0	-	-	-	-	HMMPfam_RR_TM4-6
RYR2	6262	genome.wustl.edu	37	1	237949338	237949338	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	e91+2	1.000	378	0%	162	38.3%	0	-	-	-	-	-
RYR2	6262	genome.wustl.edu	37	1	237982366	237982366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035.2	+1	reviewed	p.R4822C	0.995	570	0%	231	42.9%	0	-	probably_damaging(1)	-	-	HMMPfam_Ion_trans
FMN2	56776	genome.wustl.edu	37	1	240601433	240601433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020066.4	+1	validated	p.F1661L	1.000	178	0%	122	13.9%	0	-	possibly_damaging(0.897)	tolerated(0.08)	deleterious(0.654)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
WDR64	128025	genome.wustl.edu	37	1	241842833	241842833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000366552	+1	known	p.R177Q	1.000	107	0%	49	42.9%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EXO1	9156	genome.wustl.edu	37	1	242048791	242048791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006027.4	+1	reviewed	p.K796T	1.000	65	0%	82	41.5%	11	9%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
MAP1LC3C	440738	genome.wustl.edu	37	1	242162085	242162085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004343.2	-1	validated	p.K36T	1.000	81	0%	82	42.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAP1_LC3,superfamily_SSF54236
PLD5	200150	genome.wustl.edu	37	1	242271077	242271077	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152666.1	-1	provisional	p.R287*	1.000	136	0%	75	38.7%	0	-	-	-	-	HMMPfam_PLD_envelope,superfamily_SSF56024
PLD5	200150	genome.wustl.edu	37	1	242451693	242451693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152666.1	-1	provisional	p.L64F	1.000	277	0%	116	17.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF56024
CEP170	9859	genome.wustl.edu	37	1	243303400	243303400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014812.2	-1	reviewed	p.R1357C	1.000	274	0%	112	34.8%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP170	9859	genome.wustl.edu	37	1	243327906	243327906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014812.2	-1	reviewed	p.A1119V	1.000	181	0%	53	39.6%	8	37.5%	benign(0.072)	tolerated(0.34)	neutral(0.028)	NULL
CEP170	9859	genome.wustl.edu	37	1	243328511	243328511	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000336415	-1	known	p.D881G	1.000	232	0.4%	98	46.9%	2	50%	-	-	-	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243504411	243504411	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006642.2	+1	validated	p.S431*	0.559	181	0%	145	49.7%	4	25%	-	-	-	NULL
AKT3	10000	genome.wustl.edu	37	1	243800978	243800978	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005465.3	-1	reviewed	p.R166*	1.000	262	0%	98	34.7%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
LOC440742	440742	genome.wustl.edu	37	1	244228360	244228360	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_040547.1	+1	model	NULL	0.001	136	0%	178	41.6%	0	-	-	-	-	-
C1orf101	257044	genome.wustl.edu	37	1	244724399	244724399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130957.1	+1	validated	p.N487H	0.942	142	0%	33	45.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C1orf101	257044	genome.wustl.edu	37	1	244780960	244780960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130957.1	+1	validated	p.R874C	0.864	288	0%	214	40.2%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
KIF26B	55083	genome.wustl.edu	37	1	245765915	245765915	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018012.3	+1	provisional	p.R463*	0.602	79	0%	70	45.7%	4	25%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245775110	245775110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018012.3	+1	provisional	p.E644K	1.000	31	0%	15	60%	3	33.3%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245848935	245848935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018012.3	+1	provisional	p.E884K	1.000	13	0%	25	68%	7	14.2%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SCCPDH	51097	genome.wustl.edu	37	1	246923508	246923508	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016002.2	+1	validated	p.K323	1.000	206	0%	265	45.3%	117	42.7%	-	-	-	HMMPfam_Saccharop_dh
AHCTF1	25909	genome.wustl.edu	37	1	247024553	247024553	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015446.4	-1	validated	p.K1260	0.134	166	0%	186	47.3%	14	35.7%	-	-	-	NULL
NLRP3	114548	genome.wustl.edu	37	1	247582151	247582151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079821.2	+1	reviewed	p.D19Y	0.046	23	0%	17	41.2%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
NLRP3	114548	genome.wustl.edu	37	1	247586531	247586531	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079821.2	+1	reviewed	e2-1	0.000	285	0%	211	43.1%	0	-	-	-	-	-
OR2B11	127623	genome.wustl.edu	37	1	247614532	247614532	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004492.1	-1	provisional	p.I251	0.997	355	0%	171	44.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2B11	127623	genome.wustl.edu	37	1	247614814	247614814	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004492.1	-1	provisional	p.F157	0.000	169	0%	45	82.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2W5	441932	genome.wustl.edu	37	1	247655188	247655188	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004698.2	+1	validated	p.R253	0.312	90	0%	35	45.7%	0	-	-	-	-	HMMPfam_7tm_1
OR6F1	343169	genome.wustl.edu	37	1	247875194	247875194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005286.1	-1	provisional	p.F288L	0.983	131	0%	66	54.5%	0	-	probably_damaging(0.999)	tolerated(0.51)	deleterious(0.499)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM58	25893	genome.wustl.edu	37	1	248031154	248031154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015431.3	+1	validated	p.R252I	0.011	311	0%	282	45%	0	-	possibly_damaging(0.66)	tolerated(0.29)	neutral(0.262)	NULL
OR2L2	26246	genome.wustl.edu	37	1	248201663	248201663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004686.2	+1	provisional	p.L32I	0.738	490	0%	189	33.9%	0	-	benign(0.028)	tolerated(0.38)	neutral(0.019)	superfamily_SSF81321
OR2L2	26246	genome.wustl.edu	37	1	248201838	248201838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004686.2	+1	provisional	p.S90Y	0.016	425	0%	133	60.2%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L3	391192	genome.wustl.edu	37	1	248224194	248224194	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004687.1	+1	provisional	p.N71H	0.000	625	0%	179	49.2%	0	-	benign(0.115)	deleterious(0.02)	neutral(0.392)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2M5	127059	genome.wustl.edu	37	1	248308941	248308941	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004690.1	+1	provisional	p.F164L	0.001	549	0.2%	162	11.7%	0	-	benign(0.001)	tolerated(0.72)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248343830	248343830	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004688.1	+1	provisional	p.F181	0.000	412	0.2%	168	48.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M3	127062	genome.wustl.edu	37	1	248366647	248366647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004689.1	+1	provisional	p.S93Y	0.529	836	0%	120	52.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458811	248458811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004692.1	-1	provisional	p.V24I	0.005	192	0%	122	42.6%	0	-	benign(0.042)	tolerated(0.18)	neutral(0.059)	superfamily_SSF81321
OR2T4	127074	genome.wustl.edu	37	1	248525194	248525194	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004696.1	+1	provisional	p.A104	0.000	528	0%	121	46.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T5	401993	genome.wustl.edu	37	1	248651994	248651994	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004697.1	+1	provisional	p.I35	0.023	602	0%	111	23.4%	0	-	-	-	-	superfamily_SSF81321
OR14I1	401994	genome.wustl.edu	37	1	248844676	248844676	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004734.1	-1	provisional	p.Q310	0.000	38	0%	71	42.3%	0	-	-	-	-	superfamily_SSF81321
ZNF692	55657	genome.wustl.edu	37	1	249149759	249149759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136036.1	-1	provisional	p.I324M	0.958	97	1%	77	28.6%	25	52%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
PXDN	7837	genome.wustl.edu	37	2	1677539	1677539	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000433670	-1	known	p.T294M	0.076	414	0%	149	47%	13	38.4%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYT1L	23040	genome.wustl.edu	37	2	1946755	1946755	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015025.2	-1	validated	p.N168	0.687	181	0%	94	33%	0	-	-	-	-	NULL
MYT1L	23040	genome.wustl.edu	37	2	1983498	1983498	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015025.2	-1	validated	p.R18*	1.000	72	0%	41	46.3%	0	-	-	-	-	NULL
TRAPPC12	51112	genome.wustl.edu	37	2	3481527	3481527	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016030.5	+1	validated	p.L613*	0.129	77	0%	222	48.2%	40	17.5%	-	-	-	HMMSmart_TPR,superfamily_SSF48452
RPS7	6201	genome.wustl.edu	37	2	3623180	3623180	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011.3	+1	reviewed	e1-2	0.002	7	0.000	10	0.400	5	20%	-	-	-	-
MBOAT2	129642	genome.wustl.edu	37	2	9098719	9098719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138799.2	-1	validated	p.R43Q	1.000	106	1.9%	63	34.9%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAM17	6868	genome.wustl.edu	37	2	9668023	9668023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003183.4	-1	reviewed	p.D171Y	1.000	150	0%	212	51.4%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRHL1	29841	genome.wustl.edu	37	2	10136458	10136458	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198182.2	+1	reviewed	p.R347*	1.000	181	0%	211	48.8%	5	0%	-	-	-	NULL
UNQ5830	400943	genome.wustl.edu	37	2	10143829	10143829	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_041686.1	-1	model	NULL	0.006	116	0%	194	40.7%	0	-	-	-	-	-
ODC1	4953	genome.wustl.edu	37	2	10585139	10585139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002539.1	-1	reviewed	p.E7G	0.302	77	0%	194	50.5%	209	47.3%	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
NOL10	79954	genome.wustl.edu	37	2	10729370	10729370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024894.2	-1	validated	p.S548L	1.000	261	0.4%	270	46.7%	70	42.8%	benign(0.01)	tolerated(0.05)	neutral(0.346)	NULL
NOL10	79954	genome.wustl.edu	37	2	10799357	10799357	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024894.2	-1	validated	p.I233L	0.996	213	0%	112	53.6%	18	44.4%	benign(0.215)	tolerated(0.1)	neutral(0.307)	HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
NOL10	79954	genome.wustl.edu	37	2	10822183	10822183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024894.2	-1	validated	p.R42I	1.000	101	0%	88	44.3%	21	38%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
ATP6V1C2	245973	genome.wustl.edu	37	2	10863008	10863008	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039362.1	+1	reviewed	p.G11	0.036	243	0%	248	46.8%	0	-	-	-	-	HMMPfam_V-ATPase_C
ATP6V1C2	245973	genome.wustl.edu	37	2	10917830	10917830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039362.1	+1	reviewed	p.E315D	1.000	63	0%	71	42.3%	0	-	benign(0.313)	tolerated(0.06)	neutral(0.420)	HMMPfam_V-ATPase_C
KCNF1	3754	genome.wustl.edu	37	2	11053705	11053705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002236.4	+1	reviewed	p.L385F	1.000	55	0%	44	47.7%	1	100%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ROCK2	9475	genome.wustl.edu	37	2	11338811	11338811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004850.3	-1	reviewed	p.Q1000H	1.000	137	0%	111	43.2%	24	45.8%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_Rho_Binding
GREB1	9687	genome.wustl.edu	37	2	11728985	11728985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014668.3	+1	reviewed	p.G425S	1.000	72	0%	30	46.7%	6	83.3%	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	NULL
LPIN1	23175	genome.wustl.edu	37	2	11905772	11905772	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145693.1	+1	reviewed	p.V35	0.014	98	0%	77	46.8%	6	33.3%	-	-	-	HMMPfam_Lipin_N
NBAS	51594	genome.wustl.edu	37	2	15514762	15514762	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015909.2	-1	validated	p.E1225*	1.000	81	0%	40	70%	10	20%	-	-	-	HMMPfam_Sec39
NBAS	51594	genome.wustl.edu	37	2	15567868	15567868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015909.2	-1	validated	p.R797Q	1.000	129	0%	32	25%	4	0%	unknown(0)	deleterious(0.02)	-	HMMPfam_Sec39
NBAS	51594	genome.wustl.edu	37	2	15608646	15608646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015909.2	-1	validated	p.K579N	1.000	176	0%	63	50.8%	5	20%	unknown(0)	tolerated(0.3)	-	NULL
FAM49A	81553	genome.wustl.edu	37	2	16742338	16742338	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030797.3	-1	validated	e7-1	1.000	550	0%	92	41.3%	0	-	-	-	-	-
FAM49A	81553	genome.wustl.edu	37	2	16743407	16743407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030797.3	-1	validated	p.K101Q	1.000	174	0%	53	45.3%	0	-	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_DUF1394
RAD51AP2	729475	genome.wustl.edu	37	2	17697446	17697446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099218.2	-1	provisional	p.R746Q	0.015	263	0%	248	40.7%	0	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17698588	17698588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099218.2	-1	provisional	p.K365N	0.000	46	0%	102	10.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17699411	17699411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099218.2	-1	provisional	p.E91G	0.145	134	0%	50	40%	0	-	benign(0.093)	tolerated(0.35)	neutral(0.028)	NULL
SMC6	79677	genome.wustl.edu	37	2	17876479	17876479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142286.1	-1	validated	p.R873Q	0.994	510	0%	107	31.8%	11	72.7%	possibly_damaging(0.687)	tolerated(0.29)	neutral(0.275)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC6	79677	genome.wustl.edu	37	2	17884432	17884432	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142286.1	-1	validated	p.E712*	1.000	141	0%	88	34.1%	4	25%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
GEN1	348654	genome.wustl.edu	37	2	17950042	17950042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130009.1	+1	validated	p.L225R	1.000	109	0%	97	20.6%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00279,superfamily_5' to 3' exonuclease C-terminal subdomain
GEN1	348654	genome.wustl.edu	37	2	17962005	17962005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130009.1	+1	validated	p.S509L	0.000	136	0.7%	101	44.6%	5	40%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
MSGN1	343930	genome.wustl.edu	37	2	17998275	17998275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105569.1	+1	provisional	p.K164E	1.000	60	0%	23	30.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
KCNS3	3790	genome.wustl.edu	37	2	18112450	18112450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002252.3	+1	reviewed	p.D59Y	1.000	277	0%	83	49.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
NT5C1B	93034	genome.wustl.edu	37	2	18745176	18745176	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000418427	-1	known	p.L228I	0.995	110	0%	84	36.9%	5	60%	-	-	-	HMMPfam_5-nucleotidase
TTC32	130502	genome.wustl.edu	37	2	20096773	20096773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008237.1	-1	provisional	p.R144I	0.975	121	0%	208	47.1%	16	18.7%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	superfamily_SSF48452
HS1BP3	64342	genome.wustl.edu	37	2	20845260	20845260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022460.3	-1	reviewed	p.L13R	0.979	46	0%	24	50%	11	63.6%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
C2orf43	60526	genome.wustl.edu	37	2	21001148	21001148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021925.2	-1	predicted	p.L26I	0.961	250	0%	86	40.7%	2	50%	benign(0.103)	tolerated(0.32)	neutral(0.032)	NULL
APOB	338	genome.wustl.edu	37	2	21224939	21224939	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000384.2	-1	reviewed	p.L4452H	0.234	105	0%	67	13.4%	0	-	probably_damaging(1)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21230433	21230433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000384.2	-1	reviewed	p.S3103A	1.000	197	0%	91	47.3%	1	0%	probably_damaging(0.992)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21231531	21231531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000384.2	-1	reviewed	p.H2737N	1.000	241	0%	76	14.5%	0	-	possibly_damaging(0.907)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21236274	21236274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000384.2	-1	reviewed	p.S1325Y	0.128	291	0%	63	47.6%	0	-	possibly_damaging(0.922)	-	-	NULL
KLHL29	114818	genome.wustl.edu	37	2	23929528	23929528	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000486442	+1	known	p.S874	1.000	36	0%	42	42.9%	1	0%	-	-	-	NULL
C2orf84	653140	genome.wustl.edu	37	2	24384418	24384418	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000454150	+1	known	p.L243	0.378	95	0%	251	42.6%	0	-	-	-	-	NULL
NCOA1	8648	genome.wustl.edu	37	2	24952646	24952646	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003743.4	+1	reviewed	p.R1055*	0.999	158	0%	67	46.3%	6	50%	-	-	-	NULL
EFR3B	22979	genome.wustl.edu	37	2	25358474	25358474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014971.1	+1	validated	p.R484C	1.000	52	0%	68	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CCDC164	92749	genome.wustl.edu	37	2	26644216	26644216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145038.2	+1	validated	p.D102Y	0.997	105	0%	80	50%	0	-	unknown(0)	deleterious(0)	-	NULL
CCDC164	92749	genome.wustl.edu	37	2	26653653	26653653	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145038.2	+1	validated	e6-1	1.000	127	0.8%	92	15.2%	0	-	-	-	-	-
OTOF	9381	genome.wustl.edu	37	2	26683738	26683738	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194248.2	-1	reviewed	p.N1898	0.985	110	0.9%	29	31%	0	-	-	-	-	NULL
OTOF	9381	genome.wustl.edu	37	2	26706387	26706387	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194248.2	-1	reviewed	p.I445	0.323	29	0%	69	49.3%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
DPYSL5	56896	genome.wustl.edu	37	2	27150167	27150167	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020134.3	+1	validated	p.S156*	1.000	120	0%	51	41.2%	0	-	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
AGBL5	60509	genome.wustl.edu	37	2	27277556	27277556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021831.5	+1	validated	p.R204S	1.000	133	0%	246	46.3%	38	42.1%	possibly_damaging(0.878)	tolerated(0.09)	deleterious(0.639)	superfamily_Zn-dependent exopeptidases
KHK	3795	genome.wustl.edu	37	2	27315264	27315264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000221.2	+1	reviewed	p.L53F	1.000	24	0%	17	70.6%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PfkB,superfamily_Ribokinase-like
CAD	790	genome.wustl.edu	37	2	27446603	27446603	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004341.3	+1	reviewed	p.L328	0.986	103	0%	77	40.3%	15	46.6%	-	-	-	HMMPfam_GATase,superfamily_SSF52317
CAD	790	genome.wustl.edu	37	2	27457396	27457396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004341.3	+1	reviewed	p.L1210P	1.000	165	0%	108	37%	23	56.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
CAD	790	genome.wustl.edu	37	2	27457494	27457494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004341.3	+1	reviewed	p.M1243V	1.000	188	0%	111	46.8%	23	69.5%	benign(0.009)	tolerated(0.64)	neutral(0.004)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
CAD	790	genome.wustl.edu	37	2	27463929	27463929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004341.3	+1	reviewed	p.L1881P	0.998	96	0%	95	47.4%	44	40.9%	benign(0.004)	tolerated(0.09)	neutral(0.296)	NULL
GTF3C2	2976	genome.wustl.edu	37	2	27552085	27552085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001035521.1	-1	validated	p.E648K	1.000	254	0%	129	46.5%	42	42.8%	probably_damaging(0.962)	tolerated(0.35)	neutral(0.426)	superfamily_WD40 repeat-like
SNX17	9784	genome.wustl.edu	37	2	27597990	27597990	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014748.2	+1	reviewed	p.K248N	1.000	31	0%	54	42.6%	147	46.2%	possibly_damaging(0.793)	tolerated(0.41)	neutral(0.313)	HMMPfam_FERM_M
FNDC4	64838	genome.wustl.edu	37	2	27716844	27716844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022823.2	-1	validated	p.R136Q	1.000	39	0%	47	48.9%	3	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_FN_III-like
GCKR	2646	genome.wustl.edu	37	2	27728635	27728635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001486.3	+1	reviewed	p.K267N	1.000	72	0%	61	41%	0	-	possibly_damaging(0.555)	tolerated(0.1)	deleterious(0.476)	PatternScan_GCKR,superfamily_SIS domain
C2orf16	84226	genome.wustl.edu	37	2	27799859	27799859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032266.3	+1	validated	p.K140N	0.000	43	0%	46	43.5%	0	-	benign(0.17)	deleterious(0)	neutral(0.460)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27800056	27800056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032266.3	+1	validated	p.F206C	0.037	36	0%	41	48.8%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27800644	27800644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032266.3	+1	validated	p.S402Y	0.236	55	0%	53	47.2%	0	-	probably_damaging(0.996)	-	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27800801	27800801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032266.3	+1	validated	p.K454N	0.231	41	0%	40	37.5%	2	50%	possibly_damaging(0.727)	deleterious(0.01)	deleterious(0.670)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27800932	27800932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032266.3	+1	validated	p.S498Y	0.000	63	0%	61	42.6%	0	-	possibly_damaging(0.928)	deleterious(0.04)	deleterious(0.724)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27803127	27803127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032266.3	+1	validated	p.V1230F	0.011	37	0%	39	53.8%	1	100%	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
CCDC121	79635	genome.wustl.edu	37	2	27850468	27850468	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142683.2	-1	validated	p.E229*	0.015	218	0%	222	49.1%	3	33.3%	-	-	-	NULL
CCDC121	79635	genome.wustl.edu	37	2	27851291	27851291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142683.2	-1	validated	p.D114N	0.000	29	0%	18	44.4%	0	-	probably_damaging(0.976)	-	-	NULL
GPN1	11321	genome.wustl.edu	37	2	27861798	27861798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007266.3	+1	reviewed	p.F220C	1.000	152	0%	68	36.8%	44	56.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ATP_bind_1
BRE	9577	genome.wustl.edu	37	2	28352238	28352238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004899.3	+1	validated	p.R224Q	1.000	617	0.2%	180	53.3%	44	52.2%	possibly_damaging(0.733)	tolerated(0.09)	deleterious(0.565)	HMMPfam_BRE
PLB1	151056	genome.wustl.edu	37	2	28836923	28836923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000404858	+1	known	p.G1040*	0.007	102	0%	147	41.5%	0	-	possibly_damaging(0.873)	tolerated(0.1)	deleterious(0.625)	NULL
PPP1CB	5500	genome.wustl.edu	37	2	29004610	29004610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002709.2	+1	reviewed	p.R141Q	1.000	97	0%	202	42.6%	149	45.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
WDR43	23160	genome.wustl.edu	37	2	29169592	29169592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015131.1	+1	validated	p.E661*	0.983	313	0%	151	38.4%	83	45.7%	-	-	-	NULL
FAM179A	165186	genome.wustl.edu	37	2	29245041	29245041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199280.2	+1	validated	p.V460M	0.910	203	0%	102	54.9%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
C2orf71	388939	genome.wustl.edu	37	2	29296524	29296524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029883.1	-1	provisional	p.L202M	0.003	185	0%	136	44.1%	0	-	possibly_damaging(0.91)	tolerated(0.06)	deleterious(0.685)	NULL
YPEL5	51646	genome.wustl.edu	37	2	30379639	30379639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127399.1	+1	validated	p.R41K	1.000	112	0%	95	14.7%	55	7.2%	possibly_damaging(0.597)	tolerated(0.23)	neutral(0.248)	HMMPfam_Yippee
CAPN13	92291	genome.wustl.edu	37	2	30966375	30966375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144575.2	-1	validated	p.K440T	0.000	461	0.2%	268	44.8%	1	100%	benign(0.273)	tolerated(0.52)	neutral(0.038)	superfamily_Calpain large subunit middle domain (domain III)
CAPN13	92291	genome.wustl.edu	37	2	30977193	30977193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144575.2	-1	validated	p.S302R	0.001	319	0%	97	36.1%	3	33.3%	benign(0.009)	tolerated(0.64)	neutral(0.004)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
GALNT14	79623	genome.wustl.edu	37	2	31168707	31168707	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024572.2	-1	validated	p.I228	0.377	145	0%	31	48.4%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
XDH	7498	genome.wustl.edu	37	2	31569662	31569662	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000379.3	-1	reviewed	p.K1108	0.989	152	0%	126	38.1%	0	-	-	-	-	HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd
XDH	7498	genome.wustl.edu	37	2	31606641	31606641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000379.3	-1	reviewed	p.S289L	0.000	244	0%	104	49%	0	-	benign(0.007)	tolerated(0.39)	neutral(0.016)	HMMPfam_FAD_binding_5,superfamily_FAD-binding_2
SRD5A2	6716	genome.wustl.edu	37	2	31754438	31754438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000233139	-1	known	p.A212T	0.864	124	0%	24	58.3%	0	-	-	-	-	HMMPfam_Steroid_dh
NLRC4	58484	genome.wustl.edu	37	2	32460483	32460483	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000360906	-1	known	p.E923	0.126	327	0%	136	43.4%	1	0%	-	-	-	superfamily_RNI-like
NLRC4	58484	genome.wustl.edu	37	2	32460542	32460542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000360906	-1	known	p.E904K	0.007	312	0%	110	15.5%	1	0%	benign(0.417)	tolerated(0.31)	neutral(0.162)	superfamily_RNI-like
NLRC4	58484	genome.wustl.edu	37	2	32475156	32475156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000360906	-1	known	p.D593N	0.936	239	0%	192	41.1%	0	-	possibly_damaging(0.68)	tolerated(0.38)	neutral(0.260)	NULL
NLRC4	58484	genome.wustl.edu	37	2	32475610	32475610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000360906	-1	known	p.F441L	1.000	133	0%	68	47.1%	0	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32639968	32639968	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016252.3	+1	reviewed	p.E537*	1.000	216	0%	119	25.2%	3	0%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32640218	32640218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016252.3	+1	reviewed	p.S620F	1.000	408	0%	248	22.6%	7	28.5%	possibly_damaging(0.805)	deleterious(0.04)	deleterious(0.652)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32707634	32707634	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016252.3	+1	reviewed	p.S2560	0.998	394	0%	126	24.6%	13	23%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32730161	32730161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016252.3	+1	reviewed	p.W3197R	1.000	400	0%	120	20%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose-binding domain-like
BIRC6	57448	genome.wustl.edu	37	2	32756613	32756613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016252.3	+1	reviewed	p.Q4096K	1.000	218	0%	150	20.7%	40	20%	possibly_damaging(0.952)	tolerated(1)	neutral(0.396)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32800276	32800276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016252.3	+1	reviewed	p.R4400W	1.000	306	0%	149	22.1%	49	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32836583	32836583	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016252.3	+1	reviewed	p.D4776	1.000	581	0%	200	20.5%	142	19.7%	-	-	-	NULL
TTC27	55622	genome.wustl.edu	37	2	33036270	33036270	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017735.3	+1	provisional	p.K726	0.934	507	0%	262	19.8%	41	39%	-	-	-	superfamily_SSF48452
TTC27	55622	genome.wustl.edu	37	2	33042570	33042570	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017735.3	+1	provisional	p.V785	0.683	389	0.3%	285	22.1%	39	20.5%	-	-	-	NULL
RASGRP3	25780	genome.wustl.edu	37	2	33741647	33741647	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001139488.1	+1	validated	p.I37L	1.000	376	0%	191	46.6%	3	66.6%	benign(0.009)	tolerated(0.07)	neutral(0.320)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
RASGRP3	25780	genome.wustl.edu	37	2	33784079	33784079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001139488.1	+1	validated	p.E682D	0.442	49	0%	28	57.1%	8	12.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
VIT	5212	genome.wustl.edu	37	2	37032707	37032707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053276.3	+1	validated	p.R430I	0.763	221	0%	81	50.6%	1	0%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
HEATR5B	54497	genome.wustl.edu	37	2	37217805	37217805	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019024.1	-1	validated	p.S1895A	1.000	143	0%	128	45.3%	16	50%	possibly_damaging(0.592)	tolerated(0.1)	deleterious(0.491)	superfamily_ARM repeat
HEATR5B	54497	genome.wustl.edu	37	2	37292908	37292908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019024.1	-1	validated	p.E441D	1.000	104	0%	27	55.6%	2	0%	benign(0.019)	tolerated(1)	neutral(0.001)	superfamily_ARM repeat
HEATR5B	54497	genome.wustl.edu	37	2	37310503	37310503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019024.1	-1	validated	p.E19K	1.000	147	0%	170	41.2%	0	-	possibly_damaging(0.857)	deleterious(0.01)	deleterious(0.737)	superfamily_ARM repeat
CCDC75	253635	genome.wustl.edu	37	2	37319321	37319321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174931.2	+1	validated	p.N151H	0.769	54	0%	40	12.5%	11	36.3%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
EIF2AK2	5610	genome.wustl.edu	37	2	37368815	37368815	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135651.1	-1	validated	p.T90	0.000	70	0%	131	50.4%	14	50%	-	-	-	superfamily_dsRNA-binding domain-like
CEBPZ	10153	genome.wustl.edu	37	2	37428913	37428913	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005760.2	-1	validated	p.R1053	0.998	123	0%	146	41.1%	15	20%	-	-	-	NULL
CEBPZ	10153	genome.wustl.edu	37	2	37455305	37455305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005760.2	-1	validated	p.A344V	1.000	103	0%	96	38.5%	22	40.9%	benign(0.123)	tolerated(0.4)	neutral(0.026)	superfamily_ARM repeat
LOC344382	344382	genome.wustl.edu	37	2	38044883	38044883	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_293026.6	+1	model	p.E276*	1.000	180	0%	179	44.1%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CYP1B1	1545	genome.wustl.edu	37	2	38298080	38298080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000104.3	-1	reviewed	p.E473K	0.992	57	0%	75	40%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_p450,superfamily_Cytochrome_P450
ATL2	64225	genome.wustl.edu	37	2	38525333	38525333	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135673.1	-1	validated	p.E529*	1.000	294	0%	87	48.3%	39	35.8%	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39025506	39025506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198963.1	-1	provisional	p.L1366M	1.000	237	0%	166	49.4%	33	51.5%	possibly_damaging(0.934)	tolerated(0.13)	deleterious(0.633)	NULL
ARHGEF33	100271715	genome.wustl.edu	37	2	39156109	39156109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145451.2	+1	validated	p.R46I	1.000	262	0%	106	50%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
SOS1	6654	genome.wustl.edu	37	2	39250182	39250182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005633.3	-1	reviewed	p.L463I	1.000	91	0%	44	61.4%	8	50%	possibly_damaging(0.923)	tolerated(0.12)	deleterious(0.633)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
MAP4K3	8491	genome.wustl.edu	37	2	39552705	39552705	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003618.2	-1	reviewed	p.N291T	1.000	139	0%	80	38.8%	11	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
SLC8A1	6546	genome.wustl.edu	37	2	40656514	40656514	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021097.2	-1	validated	p.F303V	1.000	93	0%	39	48.7%	0	-	benign(0.256)	tolerated(0.21)	neutral(0.070)	NULL
EML4	27436	genome.wustl.edu	37	2	42490393	42490393	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019063.3	+1	validated	p.S196	0.993	161	0%	186	41.4%	9	22.2%	-	-	-	NULL
EML4	27436	genome.wustl.edu	37	2	42528494	42528494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019063.3	+1	validated	p.L535M	0.996	150	0%	114	39.5%	10	40%	benign(0.013)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
THADA	63892	genome.wustl.edu	37	2	43779424	43779424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083953.1	-1	validated	p.S910Y	0.998	127	0%	49	40.8%	14	28.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
THADA	63892	genome.wustl.edu	37	2	43797649	43797649	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083953.1	-1	validated	p.L689V	1.000	211	0%	138	48.6%	8	25%	possibly_damaging(0.929)	tolerated(0.13)	deleterious(0.629)	superfamily_ARM repeat
PLEKHH2	130271	genome.wustl.edu	37	2	43927263	43927263	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172069.3	+1	validated	p.K389T	0.444	52	0%	71	36.6%	1	100%	probably_damaging(0.99)	tolerated(0.35)	neutral(0.462)	NULL
DYNC2LI1	51626	genome.wustl.edu	37	2	44014332	44014332	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016008.2	+1	validated	p.P58	0.999	102	0%	99	42.4%	32	50%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DYNC2LI1	51626	genome.wustl.edu	37	2	44036869	44036869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016008.2	+1	validated	p.S340Y	1.000	134	0%	100	43%	21	52.3%	possibly_damaging(0.654)	deleterious(0.04)	deleterious(0.579)	NULL
ABCG5	64240	genome.wustl.edu	37	2	44051250	44051250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022436.2	-1	reviewed	p.T376A	0.192	41	0%	103	46.6%	0	-	-	-	-	HMMPfam_ABC2_membrane
ABCG8	64241	genome.wustl.edu	37	2	44104775	44104775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022437.2	+1	reviewed	p.R611I	0.000	87	0%	60	51.7%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
SRBD1	55133	genome.wustl.edu	37	2	45620220	45620220	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018079.4	-1	validated	p.E854D	1.000	267	0%	151	43.7%	15	40%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
PRKCE	5581	genome.wustl.edu	37	2	46386788	46386788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005400.2	+1	reviewed	p.S655L	0.128	95	0%	90	31.1%	1	100%	possibly_damaging(0.538)	deleterious(0.04)	deleterious(0.531)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CRIPT	9419	genome.wustl.edu	37	2	46850954	46850954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014171.4	+1	validated	p.S63R	1.000	84	0%	89	37.1%	34	41.1%	benign(0.282)	tolerated(0.1)	neutral(0.373)	HMMPfam_Cript
SOCS5	9655	genome.wustl.edu	37	2	46985893	46985893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014011.4	+1	reviewed	p.S75Y	1.000	96	0%	73	47.9%	7	0%	possibly_damaging(0.527)	deleterious(0.03)	deleterious(0.542)	NULL
MSH6	2956	genome.wustl.edu	37	2	48030689	48030689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000179.2	+1	reviewed	p.K1101N	1.000	456	0%	106	58.5%	88	44.3%	benign(0.002)	tolerated(0.46)	neutral(0.012)	HMMPfam_MutS_V,HMMSmart_SM00533,superfamily_P-loop containing nucleoside triphosphate hydrolases
MSH6	2956	genome.wustl.edu	37	2	48033685	48033685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000179.2	+1	reviewed	p.G1299D	1.000	136	0%	54	53.7%	116	52.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP1R21	129285	genome.wustl.edu	37	2	48681801	48681801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135629.1	+1	validated	p.R65Q	1.000	62	0%	81	46.9%	20	30%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_KLRAQ
PPP1R21	129285	genome.wustl.edu	37	2	48734432	48734432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135629.1	+1	validated	p.D665Y	1.000	203	0%	161	41.6%	21	61.9%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	HMMPfam_TTKRSYEDQ
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48809571	48809571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172311.1	+1	reviewed	p.R600Q	1.000	56	0%	53	47.2%	0	-	probably_damaging(0.998)	tolerated(0.6)	deleterious(0.479)	HMMPfam_Adap_comp_sub,superfamily_AP50
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48869591	48869591	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172311.1	+1	reviewed	p.E804*	1.000	132	0%	134	34.3%	0	-	-	-	-	HMMPfam_TFIIA
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48896993	48896993	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172311.1	+1	reviewed	p.E1075*	1.000	163	0%	102	33.3%	0	-	-	-	-	HMMPfam_TFIIA
LHCGR	3973	genome.wustl.edu	37	2	48915072	48915072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000233.3	-1	reviewed	p.L622M	1.000	114	0%	40	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LHCGR	3973	genome.wustl.edu	37	2	48925889	48925889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000233.3	-1	reviewed	p.S244F	1.000	304	0%	128	47.7%	0	-	benign(0.028)	deleterious(0.02)	neutral(0.385)	superfamily_L domain-like
LHCGR	3973	genome.wustl.edu	37	2	48936156	48936156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000233.3	-1	reviewed	p.L204R	0.919	513	0%	58	37.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
FSHR	2492	genome.wustl.edu	37	2	49295407	49295407	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000145.3	-1	reviewed	p.R59*	1.000	300	0%	22	36.4%	0	-	-	-	-	superfamily_L domain-like
ASB3	51130	genome.wustl.edu	37	2	53941719	53941719	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016115.3	-1	reviewed	e6-1	1.000	147	0%	39	48.7%	0	-	-	-	-	-
CHAC2	494143	genome.wustl.edu	37	2	54001365	54001365	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008708.2	+1	provisional	p.G86	1.000	296	0%	240	46.7%	8	37.5%	-	-	-	HMMPfam_ChaC,superfamily_SSF110857
PSME4	23198	genome.wustl.edu	37	2	54102877	54102877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014614.2	-1	validated	p.N1611H	1.000	158	0%	180	43.9%	54	72.2%	benign(0.068)	tolerated(0.09)	neutral(0.301)	superfamily_ARM repeat
PSME4	23198	genome.wustl.edu	37	2	54146299	54146299	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014614.2	-1	validated	p.P835	0.991	90	0%	121	43.8%	12	66.6%	-	-	-	NULL
PSME4	23198	genome.wustl.edu	37	2	54154547	54154547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014614.2	-1	validated	p.R526I	1.000	165	0%	141	48.2%	8	25%	benign(0.025)	tolerated(0.15)	neutral(0.242)	NULL
ACYP2	98	genome.wustl.edu	37	2	54342823	54342823	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000303536	+1	known	p.G24	0.001	47	0%	19	47.4%	2	50%	-	-	-	NULL
TSPYL6	388951	genome.wustl.edu	37	2	54482339	54482339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003937.2	-1	validated	p.S317Y	0.070	100	0%	86	16.3%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_NAP
TSPYL6	388951	genome.wustl.edu	37	2	54483053	54483053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003937.2	-1	validated	p.R79H	0.000	67	1.5%	30	43.3%	0	-	probably_damaging(0.989)	tolerated(0.19)	deleterious(0.489)	NULL
ACYP2	98	genome.wustl.edu	37	2	54531900	54531900	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138448.3	+1	reviewed	p.I87	1.000	58	0%	65	47.7%	12	25%	-	-	-	HMMPfam_Acylphosphatase,superfamily_Acylphosphatase
SPTBN1	6711	genome.wustl.edu	37	2	54845245	54845245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003128.2	+1	reviewed	p.K226N	1.000	115	0%	55	47.3%	13	61.5%	possibly_damaging(0.494)	tolerated(0.06)	deleterious(0.487)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
EML6	400954	genome.wustl.edu	37	2	55077148	55077148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039753.2	+1	validated	p.E413*	1.000	84	0%	87	46%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like
RTN4	57142	genome.wustl.edu	37	2	55253758	55253758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020532.4	-1	reviewed	p.D493N	0.998	176	0%	130	40.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C2orf63	130162	genome.wustl.edu	37	2	55433435	55433435	+	Missense_Mutation	SNP	C	C	T	rs188020276	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152385.2	-1	validated	p.R326Q	0.997	299	0%	128	37.5%	0	-	benign(0.286)	tolerated(0.43)	neutral(0.101)	superfamily_ARM repeat
MTIF2	4528	genome.wustl.edu	37	2	55464459	55464459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005369.1	-1	reviewed	p.F659C	1.000	302	0.3%	235	41.7%	40	42.5%	benign(0.093)	deleterious(0)	neutral(0.452)	superfamily_Translat_factor
MTIF2	4528	genome.wustl.edu	37	2	55479763	55479763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005369.1	-1	reviewed	p.T231A	1.000	130	0%	49	51%	20	50%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_GTP_EFTU,superfamily_SSF52540
CCDC88A	55704	genome.wustl.edu	37	2	55544775	55544775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135597.1	-1	validated	p.S1175Y	1.000	74	0%	91	51.6%	1	100%	possibly_damaging(0.658)	deleterious(0.04)	deleterious(0.582)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55561700	55561700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135597.1	-1	validated	p.R753C	1.000	163	0.6%	238	40.3%	1	100%	benign(0.056)	deleterious(0.04)	neutral(0.352)	NULL
CCDC104	112942	genome.wustl.edu	37	2	55771106	55771106	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080667.5	+1	validated	p.E225*	0.418	151	0%	90	45.6%	51	9.8%	-	-	-	NULL
VRK2	7444	genome.wustl.edu	37	2	58312030	58312030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130480.1	+1	reviewed	p.N67K	1.000	28	0%	25	32%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
BCL11A	53335	genome.wustl.edu	37	2	60773255	60773255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022893.3	-1	reviewed	p.K79T	1.000	188	0%	224	12.1%	33	18.1%	benign(0.291)	deleterious(0.01)	deleterious(0.495)	NULL
PAPOLG	64895	genome.wustl.edu	37	2	61010304	61010304	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022894.2	+1	reviewed	p.L376V	0.994	90	0%	103	50.5%	10	10%	benign(0.022)	deleterious(0.03)	neutral(0.365)	HMMPfam_PAP_RNA-bind,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain
REL	5966	genome.wustl.edu	37	2	61149129	61149129	+	Missense_Mutation	SNP	C	C	T	rs144119768	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002908.2	+1	validated	p.S440L	0.977	304	0%	55	16.4%	3	66.6%	possibly_damaging(0.65)	deleterious(0.01)	deleterious(0.634)	NULL
PUS10	150962	genome.wustl.edu	37	2	61172245	61172245	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144709.2	-1	validated	e16-2	1.000	207	0%	75	36%	0	-	-	-	-	-
USP34	9736	genome.wustl.edu	37	2	61415609	61415609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014709.3	-1	validated	p.F3423L	1.000	112	0%	71	46.5%	92	47.8%	benign(0.005)	tolerated(0.09)	neutral(0.296)	NULL
USP34	9736	genome.wustl.edu	37	2	61456737	61456737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014709.3	-1	validated	p.Q2382P	1.000	149	0%	96	47.9%	25	56%	probably_damaging(0.993)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61475811	61475811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014709.3	-1	validated	p.F2077L	1.000	117	0%	140	49.3%	19	36.8%	probably_damaging(0.998)	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP34	9736	genome.wustl.edu	37	2	61558470	61558470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014709.3	-1	validated	p.F957L	1.000	182	0%	124	48.4%	8	25%	probably_damaging(0.971)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61632903	61632903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014709.3	-1	validated	p.I164M	1.000	220	0%	190	44.7%	4	50%	benign(0.148)	-	-	NULL
XPO1	7514	genome.wustl.edu	37	2	61713062	61713062	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003400.3	-1	reviewed	p.A783	0.996	126	0%	148	41.9%	113	40.7%	-	-	-	HMMPfam_CRM1_C,superfamily_ARM-type_fold
XPO1	7514	genome.wustl.edu	37	2	61753593	61753593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003400.3	-1	reviewed	p.D64N	1.000	88	0%	145	42.1%	50	52%	benign(0.228)	tolerated(0.05)	neutral(0.368)	HMMPfam_IBN_N,superfamily_ARM-type_fold
FAM161A	84140	genome.wustl.edu	37	2	62067001	62067001	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032180.2	-1	validated	p.R380*	0.000	152	0%	113	50.4%	5	0%	-	-	-	HMMPfam_UPF0564
EHBP1	23301	genome.wustl.edu	37	2	62991476	62991476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015252.3	+1	reviewed	p.I80L	1.000	226	0%	65	16.9%	7	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
EHBP1	23301	genome.wustl.edu	37	2	63176090	63176090	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000454124	+1	known	p.R8K	0.001	69	0%	54	44.4%	14	64.2%	-	-	-	NULL
VPS54	51542	genome.wustl.edu	37	2	64140409	64140409	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016516.2	-1	reviewed	p.G790	1.000	125	0%	77	45.5%	25	28%	-	-	-	HMMPfam_Vps54
SLC1A4	6509	genome.wustl.edu	37	2	65243799	65243799	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003038.3	+1	validated	p.T342	0.998	116	0%	72	36.1%	23	52.1%	-	-	-	HMMPfam_SDF
RAB1A	5861	genome.wustl.edu	37	2	65357036	65357036	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004161.4	-1	reviewed	p.N5T	1.000	17	0%	11	36.4%	80	32.5%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00177
ETAA1	54465	genome.wustl.edu	37	2	67630496	67630496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019002.3	+1	validated	p.L228V	0.960	29	0%	18	33.3%	2	0%	possibly_damaging(0.889)	tolerated(0.42)	neutral(0.363)	NULL
C1D	10438	genome.wustl.edu	37	2	68274400	68274400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006333.3	-1	reviewed	p.H15N	1.000	182	0%	82	34.1%	16	43.7%	benign(0.024)	tolerated(0.43)	neutral(0.014)	NULL
PLEK	5341	genome.wustl.edu	37	2	68609717	68609717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002664.2	+1	validated	p.E142K	1.000	198	0%	70	32.9%	3	0%	benign(0.373)	tolerated(0.77)	neutral(0.120)	HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785
PROKR1	10887	genome.wustl.edu	37	2	68882671	68882671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138964.2	+1	validated	p.P382H	0.982	126	0.8%	31	45.2%	0	-	possibly_damaging(0.812)	deleterious(0.01)	deleterious(0.711)	NULL
GFPT1	2673	genome.wustl.edu	37	2	69575380	69575380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002056.2	-1	reviewed	p.R293Q	1.000	253	0%	71	46.5%	60	40%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_SSF56235
ADD2	119	genome.wustl.edu	37	2	70900414	70900414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017488.3	-1	reviewed	p.E596K	0.000	70	0%	42	40.5%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
ADD2	119	genome.wustl.edu	37	2	70904956	70904956	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001617.3	-1	reviewed	p.I479	0.993	304	0%	79	53.2%	0	-	-	-	-	NULL
ADD2	119	genome.wustl.edu	37	2	70910753	70910753	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001617.3	-1	reviewed	p.F365	0.937	81	0%	16	31.2%	1	0%	-	-	-	NULL
CD207	50489	genome.wustl.edu	37	2	71058230	71058230	+	Missense_Mutation	SNP	T	T	G	rs57302492	byCluster;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015717.2	-1	validated	p.K313T	0.000	302	0%	126	48.4%	0	-	benign(0.001)	tolerated(0.95)	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1
CD207	50489	genome.wustl.edu	37	2	71060161	71060161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015717.2	-1	validated	p.S196Y	0.022	88	0%	103	53.4%	1	0%	benign(0.058)	tolerated(0.16)	neutral(0.063)	HMMSmart_CLECT
MPHOSPH10	10199	genome.wustl.edu	37	2	71361770	71361770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005791.1	+1	reviewed	p.D314G	0.997	53	0%	67	52.2%	51	45%	possibly_damaging(0.69)	tolerated(0.17)	neutral(0.306)	HMMPfam_Mpp10
MPHOSPH10	10199	genome.wustl.edu	37	2	71376534	71376534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005791.1	+1	reviewed	p.S616L	0.014	63	0%	94	43.6%	64	60.9%	benign(0.015)	tolerated(0.65)	neutral(0.004)	HMMPfam_Mpp10
ZNF638	27332	genome.wustl.edu	37	2	71577200	71577200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014972.1	+1	reviewed	p.N372K	1.000	268	0%	76	50%	4	25%	possibly_damaging(0.455)	deleterious(0.02)	deleterious(0.532)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71591191	71591191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014972.1	+1	reviewed	p.R509Q	1.000	164	0%	76	43.4%	7	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71631009	71631009	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014972.1	+1	reviewed	p.E947*	1.000	111	0%	51	45.1%	15	6.6%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF638	27332	genome.wustl.edu	37	2	71650697	71650697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014972.1	+1	reviewed	p.E1351D	0.997	26	0%	46	37%	30	80%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
DYSF	8291	genome.wustl.edu	37	2	71755462	71755462	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130987.1	+1	reviewed	p.I437	1.000	133	0%	101	45.5%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CYP26B1	56603	genome.wustl.edu	37	2	72359673	72359673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019885.2	-1	reviewed	p.D408Y	1.000	18	0%	16	62.5%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMPfam_p450,superfamily_Cytochrome_P450
EXOC6B	23233	genome.wustl.edu	37	2	72719469	72719469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015189.1	-1	validated	p.R548M	1.000	159	0%	31	29%	9	44.4%	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	HMMPfam_Sec15
EXOC6B	23233	genome.wustl.edu	37	2	72945418	72945418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015189.1	-1	validated	p.K161N	0.997	201	0%	48	47.9%	9	33.3%	possibly_damaging(0.739)	deleterious(0)	deleterious(0.715)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73717276	73717276	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015120.4	+1	reviewed	p.S2729	0.998	305	0%	143	44.1%	5	40%	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73747016	73747016	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015120.4	+1	reviewed	p.I3217M	1.000	148	0%	147	30.6%	10	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
C2orf78	388960	genome.wustl.edu	37	2	74041091	74041091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080474.1	+1	predicted	p.N195K	0.984	189	0%	80	36.2%	0	-	possibly_damaging(0.477)	tolerated(0.06)	deleterious(0.480)	NULL
C2orf78	388960	genome.wustl.edu	37	2	74041189	74041189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080474.1	+1	predicted	p.S228Y	0.954	86	0%	46	54.3%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
C2orf78	388960	genome.wustl.edu	37	2	74043886	74043886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080474.1	+1	predicted	p.L846I	0.396	182	0.5%	72	50%	0	-	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	NULL
STAMBP	10617	genome.wustl.edu	37	2	74077533	74077533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006463.3	+1	reviewed	p.L300I	1.000	182	0%	52	48.1%	55	49%	benign(0)	tolerated(1)	-	HMMPfam_Mov34,HMMSmart_JAB_MPN,superfamily_SSF102712
MOB1A	55233	genome.wustl.edu	37	2	74399846	74399846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018221.3	-1	provisional	p.K16N	1.000	275	0%	258	50.4%	37	45.9%	possibly_damaging(0.85)	deleterious(0.05)	deleterious(0.672)	NULL
MTHFD2	10797	genome.wustl.edu	37	2	74435777	74435777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006636.3	+1	reviewed	p.R164Q	1.000	650	0%	338	45%	50	68%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-bd,superfamily_SSF53223
MTHFD2	10797	genome.wustl.edu	37	2	74441282	74441282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006636.3	+1	reviewed	p.K322N	1.000	72	0%	67	40.3%	65	13.8%	probably_damaging(0.993)	tolerated(0.05)	deleterious(0.795)	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-bd
SLC4A5	57835	genome.wustl.edu	37	2	74491394	74491394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021196.3	-1	reviewed	p.L199F	0.882	215	0%	96	47.9%	0	-	possibly_damaging(0.789)	tolerated(0.67)	neutral(0.298)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
RTKN	6242	genome.wustl.edu	37	2	74657611	74657611	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001015055.1	-1	reviewed	p.E136D	0.839	335	0%	137	41.6%	20	50%	probably_damaging(1)	tolerated(0.8)	deleterious(0.500)	NULL
INO80B	83444	genome.wustl.edu	37	2	74682538	74682538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031288.2	+1	validated	p.A22T	0.988	84	1.2%	144	44.4%	20	45%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
AUP1	550	genome.wustl.edu	37	2	74755126	74755126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181575.3	-1	reviewed	p.R227C	0.764	93	0%	58	56.9%	260	45.7%	benign(0.339)	deleterious(0.03)	deleterious(0.471)	NULL
HTRA2	27429	genome.wustl.edu	37	2	74760030	74760030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013247.4	+1	reviewed	p.R432Q	1.000	236	0.4%	117	48.7%	44	50%	probably_damaging(0.982)	tolerated(0.18)	deleterious(0.482)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
DOK1	1796	genome.wustl.edu	37	2	74781924	74781924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001381.2	+1	reviewed	p.Q15K	1.000	37	0%	46	45.7%	5	20%	probably_damaging(0.963)	tolerated(0.09)	deleterious(0.702)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GCFC2	6936	genome.wustl.edu	37	2	75907416	75907416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003203.4	-1	validated	p.P572H	1.000	188	0%	175	41.7%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCFC
LRRTM4	80059	genome.wustl.edu	37	2	77745828	77745828	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134745.1	-1	validated	p.I389	0.014	305	0%	56	53.6%	0	-	-	-	-	NULL
LRRTM4	80059	genome.wustl.edu	37	2	77745922	77745922	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134745.1	-1	validated	p.N358T	0.298	205	0%	31	45.2%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
LRRTM1	347730	genome.wustl.edu	37	2	80530159	80530159	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178839.4	-1	validated	p.D262	1.000	50	0%	26	57.7%	174	54.5%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
CTNNA2	1496	genome.wustl.edu	37	2	80874784	80874784	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004389.3	+1	validated	p.S835	0.988	171	0%	27	40.7%	45	37.7%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
SUCLG1	8802	genome.wustl.edu	37	2	84676846	84676847	+	Frame_Shift_Ins	INS	-	-	AGGAACAATGC	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003849.3	-1	reviewed	p.Y43fs	0.997:1.000	-	-	-	-	-	-	-	-	-	superfamily_NAD(P)-bd
DNAH6	1768	genome.wustl.edu	37	2	84932810	84932810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001370.1	+1	validated	p.D2889G	1.000	181	0%	98	44.9%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
DNAH6	1768	genome.wustl.edu	37	2	84934721	84934721	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001370.1	+1	validated	p.R2977*	1.000	180	0.6%	82	52.4%	0	-	-	-	-	NULL
TGOLN2	10618	genome.wustl.edu	37	2	85553825	85553825	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006464.2	-1	validated	p.E344*	0.114	73	0%	62	64.5%	25	16%	-	-	-	NULL
ST3GAL5	8869	genome.wustl.edu	37	2	86067399	86067399	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003896.3	-1	reviewed	p.F375	0.950	358	0.3%	109	49.5%	12	50%	-	-	-	HMMPfam_Glyco_transf_29
POLR1A	25885	genome.wustl.edu	37	2	86305317	86305317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015425.3	-1	validated	p.R393S	1.000	167	0.6%	144	46.5%	8	75%	probably_damaging(0.97)	tolerated(0.84)	neutral(0.413)	HMMSmart_SM00663,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
IMMT	10989	genome.wustl.edu	37	2	86406607	86406607	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006839.2	-1	validated	p.F86	1.000	149	0%	78	43.6%	40	47.5%	-	-	-	HMMPfam_Mitofilin
KDM3A	55818	genome.wustl.edu	37	2	86709073	86709073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018433.5	+1	reviewed	p.I845L	0.772	244	0%	107	43%	66	50%	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
LOC440871	440871	genome.wustl.edu	37	2	87566149	87566149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001719095.2	+1	model	p.N114S	0.000	222	0%	275	34.5%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set
C2orf51	200523	genome.wustl.edu	37	2	88828984	88828984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152670.2	+1	validated	p.Y179D	1.000	74	0%	18	44.4%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
EIF2AK3	9451	genome.wustl.edu	37	2	88874238	88874238	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004836.5	-1	reviewed	p.I921	0.477	288	0%	75	44%	37	40.5%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF2AK3	9451	genome.wustl.edu	37	2	88913339	88913339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004836.5	-1	reviewed	p.R114I	0.996	193	0%	69	49.3%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Quinoprotein alcohol dehydrogenase-like
IGKV1-5	28299	genome.wustl.edu	37	2	89246820	89246820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000496168	-1	known	p.S117Y	0.279	232	0%	187	38.5%	6	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMSmart_SM00409,superfamily_Immunoglobulin
IGKV1-8	28942	genome.wustl.edu	37	2	89292139	89292139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000495489	-1	known	p.A45V	0.054	266	0%	175	46.9%	24	0%	benign(0.008)	deleterious(0)	neutral(0.445)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1-12	28940	genome.wustl.edu	37	2	89339806	89339806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000480492	-1	known	p.S89Y	0.993	607	0%	189	39.2%	4	0%	benign(0.033)	deleterious(0.03)	neutral(0.366)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1-12	28940	genome.wustl.edu	37	2	89340006	89340006	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000480492	-1	known	p.C22	0.001	467	0.4%	133	36.8%	15	0%	-	-	-	NULL
IGKV2-28	28921	genome.wustl.edu	37	2	89521316	89521316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000482769	-1	known	p.L75V	0.000	161	0%	101	30.7%	157	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1-33	28933	genome.wustl.edu	37	2	89568182	89568182	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000473726	-1	known	p.L17	0.540	103	0%	75	68%	42	0%	-	-	-	NULL
IGKV1D-13	28902	genome.wustl.edu	37	2	90193393	90193393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390275	+1	known	p.T107N	0.004	526	0%	149	28.9%	0	-	benign(0.081)	tolerated(0.08)	neutral(0.306)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGKV1D-42	28892	genome.wustl.edu	37	2	90229404	90229404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390278	+1	known	p.D75G	0.000	159	0%	79	54.4%	0	-	benign(0.01)	deleterious(0.05)	neutral(0.346)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
LOC100131662	100131662	genome.wustl.edu	37	2	95691459	95691459	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_078259.1	-1	model	NULL	0.872	15	0%	29	31%	0	-	-	-	-	-
MRPS5	64969	genome.wustl.edu	37	2	95775714	95775714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031902.3	-1	reviewed	p.R117I	1.000	120	0%	127	52.8%	40	45%	probably_damaging(0.975)	tolerated(0.06)	deleterious(0.740)	NULL
ADRA2B	151	genome.wustl.edu	37	2	96781615	96781615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000409345	-1	known	p.D92N	1.000	50	0%	24	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NCAPH	23397	genome.wustl.edu	37	2	97007580	97007580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015341.3	+1	reviewed	p.D74Y	1.000	53	0%	39	41%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Barren
ARID5A	10865	genome.wustl.edu	37	2	97217943	97217943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_212481.1	+1	validated	p.D560Y	0.695	14	0%	11	54.5%	21	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FER1L5	90342	genome.wustl.edu	37	2	97365350	97365350	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113382.1	+1	provisional	p.F1585	1.000	99	0%	98	39.8%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ANKRD36	375248	genome.wustl.edu	37	2	97875579	97875579	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000461153	+1	known	p.E943*	0.003	419	0%	131	31.3%	0	-	-	-	-	NULL
ANKRD36B	57730	genome.wustl.edu	37	2	98206003	98206003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000258459	-1	known	p.R49I	0.029	54	0%	129	55.8%	5	20%	-	-	-	HMMPfam_Ank,superfamily_Ankyrin repeat
TMEM131	23505	genome.wustl.edu	37	2	98451268	98451268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015348.1	-1	validated	p.I309V	1.000	289	0%	187	41.7%	6	66.6%	benign(0.009)	tolerated(0.73)	neutral(0.002)	NULL
VWA3B	200403	genome.wustl.edu	37	2	98828405	98828405	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144992.4	+1	provisional	p.T584A	1.000	63	0%	69	46.4%	0	-	probably_damaging(0.953)	tolerated(0.27)	neutral(0.430)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWA3B	200403	genome.wustl.edu	37	2	98844737	98844737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144992.4	+1	provisional	p.Y698D	0.243	182	0%	98	42.9%	0	-	probably_damaging(0.988)	tolerated(0.21)	deleterious(0.481)	NULL
CNGA3	1261	genome.wustl.edu	37	2	99012980	99012980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001298.2	+1	reviewed	p.K449N	1.000	77	0%	45	35.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_cNMP_binding
INPP4A	3631	genome.wustl.edu	37	2	99136536	99136536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134224.1	+1	reviewed	p.R9C	1.000	41	0%	14	35.7%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
INPP4A	3631	genome.wustl.edu	37	2	99137182	99137182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134224.1	+1	reviewed	p.E47*	1.000	63	0%	159	42.8%	2	0%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
INPP4A	3631	genome.wustl.edu	37	2	99204034	99204034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134224.1	+1	reviewed	p.R966M	1.000	104	0%	134	47.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UNC50	25972	genome.wustl.edu	37	2	99226441	99226441	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014044.5	+1	validated	p.T73	0.008	55	0%	54	55.6%	41	31.7%	-	-	-	HMMPfam_UNC-50
MGAT4A	11320	genome.wustl.edu	37	2	99294883	99294883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012214.2	-1	reviewed	p.R49Q	1.000	142	0%	95	45.3%	0	-	possibly_damaging(0.477)	tolerated(0.24)	neutral(0.195)	NULL
C2orf55	343990	genome.wustl.edu	37	2	99411032	99411032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207362.2	-1	validated	p.S951Y	1.000	76	0%	71	43.7%	5	60%	unknown(0)	deleterious(0)	-	NULL
C2orf55	343990	genome.wustl.edu	37	2	99412590	99412590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207362.2	-1	validated	p.Q914H	1.000	213	0%	168	41.1%	10	50%	unknown(0)	deleterious(0)	-	NULL
C2orf55	343990	genome.wustl.edu	37	2	99412605	99412605	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207362.2	-1	validated	p.I909	0.998	206	0%	160	43.1%	9	33.3%	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99720436	99720436	+	Missense_Mutation	SNP	G	G	T	rs140899327	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025244.2	-1	validated	p.S202Y	1.000	653	0.2%	300	43.3%	4	50%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LIPT1	51601	genome.wustl.edu	37	2	99778496	99778496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015929.3	+1	reviewed	p.K26Q	0.009	68	0%	82	37.8%	7	28.5%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
MITD1	129531	genome.wustl.edu	37	2	99787986	99787986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138798.1	-1	provisional	p.R126I	1.000	110	0%	80	41.2%	34	55.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LYG2	254773	genome.wustl.edu	37	2	99861811	99861811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175735.3	-1	reviewed	p.A99T	0.994	289	0%	61	42.6%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_SLT,superfamily_SSF53955
LYG1	129530	genome.wustl.edu	37	2	99901197	99901197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174898.2	-1	validated	p.E140D	0.997	117	0%	78	35.9%	0	-	probably_damaging(0.985)	tolerated(0.58)	neutral(0.437)	superfamily_Lysozyme-like
TXNDC9	10190	genome.wustl.edu	37	2	99938453	99938453	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005783.3	-1	reviewed	p.E176D	0.752	73	0%	140	10.7%	62	16.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Thiordxn-like_fd
REV1	51455	genome.wustl.edu	37	2	100037986	100037986	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016316.2	-1	reviewed	p.T602	0.208	370	0%	120	48.3%	9	22.2%	-	-	-	HMMPfam_IMS,superfamily_DNA/RNA polymerases
AFF3	3899	genome.wustl.edu	37	2	100623773	100623773	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001025108.1	-1	reviewed	p.I133	0.000	229	0%	123	50.4%	1	100%	-	-	-	HMMPfam_AF-4
CHST10	9486	genome.wustl.edu	37	2	101010011	101010011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004854.3	-1	validated	p.F256C	1.000	486	0%	155	12.9%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_2
NPAS2	4862	genome.wustl.edu	37	2	101521208	101521208	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000427413	+1	known	p.*63Y	1.000	41	0%	31	45.2%	2	0%	-	-	-	NULL
IL1RL1	9173	genome.wustl.edu	37	2	102965631	102965631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016232.4	+1	reviewed	p.I404L	1.000	559	0%	179	46.9%	0	-	possibly_damaging(0.769)	tolerated(0.49)	neutral(0.296)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
IL18RAP	8807	genome.wustl.edu	37	2	103059738	103059738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003853.2	+1	reviewed	p.K292R	0.000	142	0%	79	49.4%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMSmart_SM00409,superfamily_Immunoglobulin
IL18RAP	8807	genome.wustl.edu	37	2	103068577	103068577	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003853.2	+1	reviewed	p.F579C	0.000	91	0%	47	46.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC9A2	6549	genome.wustl.edu	37	2	103300696	103300696	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003048.3	+1	validated	p.C442	0.986	551	0%	244	36.9%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
SLC9A2	6549	genome.wustl.edu	37	2	103321094	103321094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003048.3	+1	validated	p.E646G	0.991	182	0%	52	36.5%	1	0%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
TMEM182	130827	genome.wustl.edu	37	2	103379070	103379070	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144632.3	+1	validated	p.E53*	1.000	291	0%	138	49.3%	6	50%	-	-	-	NULL
UXS1	80146	genome.wustl.edu	37	2	106774521	106774521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025076.3	-1	validated	p.R90I	1.000	401	0%	298	45.3%	16	62.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_NAD(P)-binding Rossmann-fold domains
RGPD3	653489	genome.wustl.edu	37	2	107032360	107032360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144013.1	-1	validated	p.N1670K	1.000	629	0%	270	37%	5	20%	unknown(0)	deleterious(0)	-	NULL
RGPD3	653489	genome.wustl.edu	37	2	107041369	107041369	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144013.1	-1	validated	p.S1018	0.009	103	0%	116	39.7%	11	0%	-	-	-	NULL
RGPD3	653489	genome.wustl.edu	37	2	107049685	107049685	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144013.1	-1	validated	p.L754	0.954	415	0%	406	26.8%	0	-	-	-	-	NULL
ST6GAL2	84620	genome.wustl.edu	37	2	107449027	107449027	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142351.1	-1	validated	p.L379	0.741	83	0%	41	48.8%	0	-	-	-	-	HMMPfam_Glyco_transf_29,superfamily_Glycoside hydrolase/deacetylase
RGPD4	285190	genome.wustl.edu	37	2	108475968	108475968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182588.2	+1	validated	p.S531Y	0.695	375	0%	418	23.7%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108487762	108487762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182588.2	+1	validated	p.R1101Q	1.000	88	0%	64	48.4%	0	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RGPD4	285190	genome.wustl.edu	37	2	108488674	108488674	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182588.2	+1	validated	p.L1405R	1.000	163	0%	118	47.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
SULT1C2	6819	genome.wustl.edu	37	2	108917369	108917369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176825.2	+1	reviewed	p.S129Y	0.843	255	0%	121	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
GCC2	9648	genome.wustl.edu	37	2	109087091	109087091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181453.3	+1	reviewed	p.E436*	1.000	10	0%	20	55%	2	100%	-	-	-	NULL
GCC2	9648	genome.wustl.edu	37	2	109116104	109116104	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181453.3	+1	reviewed	p.F1626	1.000	1190	0%	1129	20.2%	31	41.9%	-	-	-	HMMPfam_GRIP,HMMSmart_Grip
RANBP2	5903	genome.wustl.edu	37	2	109399206	109399206	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006267.4	+1	reviewed	p.S3086*	1.000	87	0%	85	45.9%	78	25.6%	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
CCDC138	165055	genome.wustl.edu	37	2	109490001	109490001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144978.1	+1	provisional	p.I596M	0.932	55	0%	44	47.7%	3	100%	possibly_damaging(0.559)	deleterious(0.02)	deleterious(0.574)	NULL
SEPT10	151011	genome.wustl.edu	37	2	110310693	110310693	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144710.2	-1	reviewed	p.E378*	1.000	839	0%	315	40.6%	16	12.5%	-	-	-	NULL
BUB1	699	genome.wustl.edu	37	2	111399707	111399707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004336.3	-1	reviewed	p.F818V	0.991	131	0%	123	48.8%	26	15.3%	benign(0)	tolerated(0.76)	neutral(0.001)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
BUB1	699	genome.wustl.edu	37	2	111415133	111415133	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004336.3	-1	reviewed	p.E536*	1.000	173	0%	60	45%	16	6.2%	-	-	-	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112536335	112536335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022662.2	-1	validated	p.L1768M	1.000	218	0%	97	23.7%	15	6.6%	benign(0.313)	tolerated(0.6)	neutral(0.102)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112576515	112576515	+	Missense_Mutation	SNP	C	C	T	rs2674122		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022662.2	-1	validated	p.R1076Q	1.000	129	0%	63	25.4%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112601135	112601135	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022662.2	-1	validated	p.E632*	1.000	454	0%	295	47.8%	4	25%	-	-	-	NULL
MERTK	10461	genome.wustl.edu	37	2	112767624	112767624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006343.2	+1	reviewed	p.R687Q	1.000	297	0.7%	260	45.8%	24	20.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TMEM87B	84910	genome.wustl.edu	37	2	112824592	112824592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032824.2	+1	validated	p.K133R	0.999	141	0%	146	50.7%	9	66.6%	possibly_damaging(0.862)	tolerated(0.66)	neutral(0.336)	NULL
FBLN7	129804	genome.wustl.edu	37	2	112922646	112922646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153214.2	+1	validated	p.E102K	0.999	80	0%	69	53.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZC3H6	376940	genome.wustl.edu	37	2	113057436	113057436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198581.2	+1	validated	p.E15K	1.000	58	0%	104	44.2%	0	-	unknown(0)	deleterious(0)	-	NULL
ZC3H6	376940	genome.wustl.edu	37	2	113057501	113057501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198581.2	+1	validated	p.E36D	1.000	74	0%	145	11.7%	1	0%	unknown(0)	tolerated(0.29)	-	NULL
TTL	150465	genome.wustl.edu	37	2	113251909	113251909	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153712.4	+1	validated	p.G142	0.994	75	0%	38	52.6%	23	52.1%	-	-	-	HMMPfam_TTL
POLR1B	84172	genome.wustl.edu	37	2	113308539	113308539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019014.4	+1	validated	p.R241Q	1.000	497	0%	315	39.7%	7	57.1%	benign(0.008)	tolerated(0.07)	neutral(0.319)	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1B	84172	genome.wustl.edu	37	2	113309453	113309453	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019014.4	+1	validated	p.I288	0.861	279	0%	139	47.5%	7	14.2%	-	-	-	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1B	84172	genome.wustl.edu	37	2	113315587	113315587	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019014.4	+1	validated	p.F420C	0.996	187	0%	159	44.7%	13	69.2%	possibly_damaging(0.654)	tolerated(0.07)	deleterious(0.549)	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1B	84172	genome.wustl.edu	37	2	113322060	113322060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019014.4	+1	validated	p.S577Y	0.775	700	0%	185	43.8%	10	30%	unknown(0)	-	-	HMMPfam_RNA_pol_Rpa2_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
CHCHD5	84269	genome.wustl.edu	37	2	113343816	113343816	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032309.2	+1	provisional	p.P61	0.871	96	0%	27	51.9%	43	0%	-	-	-	HMMPfam_CHCH
SLC20A1	6574	genome.wustl.edu	37	2	113417110	113417110	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005415.3	+1	provisional	p.R460*	1.000	61	0%	59	40.7%	50	20%	-	-	-	HMMPfam_PHO4
CKAP2L	150468	genome.wustl.edu	37	2	113513557	113513557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152515.3	-1	validated	p.R464Q	1.000	190	0%	241	46.1%	15	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CKAP2L	150468	genome.wustl.edu	37	2	113514241	113514241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152515.3	-1	validated	p.V236A	0.065	184	0%	205	47.3%	8	25%	benign(0.001)	tolerated(0.87)	neutral(0.001)	NULL
CKAP2L	150468	genome.wustl.edu	37	2	113514368	113514368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152515.3	-1	validated	p.E194K	0.004	239	0%	283	41%	6	83.3%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
IL36B	27177	genome.wustl.edu	37	2	113785641	113785641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173178.1	-1	reviewed	p.L105I	0.952	236	0%	83	45.8%	0	-	possibly_damaging(0.62)	tolerated(0.34)	neutral(0.239)	HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine
IL36B	27177	genome.wustl.edu	37	2	113786569	113786569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014438.3	-1	reviewed	p.D70Y	0.000	468	0%	145	44.8%	0	-	possibly_damaging(0.753)	deleterious(0.03)	deleterious(0.641)	superfamily_Cytokine
PSD4	23550	genome.wustl.edu	37	2	113955139	113955139	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012455.2	+1	validated	e12-2	0.993	136	0%	60	48.3%	0	-	-	-	-	-
LOC645529	645529	genome.wustl.edu	37	2	114425566	114425566	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001716670.2	-1	model	p.S186	0.005	28	0%	21	57.1%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
DPP10	57628	genome.wustl.edu	37	2	116572517	116572517	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020868.3	+1	validated	p.R617*	1.000	119	0%	135	52.6%	0	-	-	-	-	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
CCDC93	54520	genome.wustl.edu	37	2	118698785	118698785	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019044.3	-1	validated	p.F501C	1.000	374	0%	77	37.7%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC93	54520	genome.wustl.edu	37	2	118698788	118698788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019044.3	-1	validated	p.R500I	1.000	379	0%	78	53.8%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDP1	200373	genome.wustl.edu	37	2	120395904	120395904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029996.3	+1	validated	p.L396I	0.989	323	0%	91	46.2%	3	66.6%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
PCDP1	200373	genome.wustl.edu	37	2	120413984	120413984	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029996.3	+1	validated	p.L535	0.972	167	0%	50	54%	5	20%	-	-	-	NULL
PTPN4	5775	genome.wustl.edu	37	2	120692378	120692378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002830.2	+1	reviewed	p.R400Q	1.000	148	0%	188	41.5%	3	66.6%	benign(0.033)	tolerated(0.08)	neutral(0.301)	NULL
GLI2	2736	genome.wustl.edu	37	2	121744029	121744029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005270.4	+1	reviewed	p.A711V	0.004	22	0%	18	55.6%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
TFCP2L1	29842	genome.wustl.edu	37	2	122004483	122004483	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014553.2	-1	validated	p.R190*	1.000	177	0%	62	48.4%	12	33.3%	-	-	-	HMMPfam_CP2
CLASP1	23332	genome.wustl.edu	37	2	122220106	122220106	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015282.2	-1	validated	e9+2	1.000	281	0%	96	37.5%	1	100%	-	-	-	-
CNTNAP5	129684	genome.wustl.edu	37	2	125521351	125521351	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130773.2	+1	reviewed	p.I778	0.999	315	0%	55	38.2%	0	-	-	-	-	superfamily_ConA_like_lec_gl
CNTNAP5	129684	genome.wustl.edu	37	2	125671838	125671838	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130773.2	+1	reviewed	p.S1298	1.000	287	0%	55	47.3%	0	-	-	-	-	NULL
MAP3K2	10746	genome.wustl.edu	37	2	128075798	128075798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006609.3	-1	reviewed	p.E381*	1.000	111	0%	52	38.5%	14	21.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
IWS1	55677	genome.wustl.edu	37	2	128262267	128262267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017969.2	-1	validated	p.E404D	0.997	324	0%	284	42.6%	56	32.1%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128391852	128391852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080527.1	+1	provisional	p.K1845N	1.000	10	0%	17	52.9%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMSmart_SM00295
GPR17	2840	genome.wustl.edu	37	2	128408376	128408376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005291.2	+1	validated	p.C51G	0.995	31	0%	72	11.1%	0	-	unknown(0)	deleterious(0)	-	superfamily_Family A G protein-coupled receptor-like
WDR33	55339	genome.wustl.edu	37	2	128482778	128482778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018383.3	-1	reviewed	p.K288I	1.000	133	0%	135	48.1%	19	57.8%	unknown(0)	deleterious(0)	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
POLR2D	5433	genome.wustl.edu	37	2	128610503	128610503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004805.3	-1	reviewed	p.R84C	1.000	130	0%	173	43.4%	17	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb4,HMMSmart_SM00657,superfamily_HRDC-like
SAP130	79595	genome.wustl.edu	37	2	128700009	128700009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024545.3	-1	validated	p.E993K	1.000	672	0%	338	45.9%	35	42.8%	possibly_damaging(0.806)	deleterious(0.01)	deleterious(0.709)	NULL
UGGT1	56886	genome.wustl.edu	37	2	128910431	128910431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020120.3	+1	validated	p.S697Y	1.000	146	0%	105	43.8%	24	25%	possibly_damaging(0.652)	deleterious(0.03)	deleterious(0.594)	NULL
UGGT1	56886	genome.wustl.edu	37	2	128930179	128930179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020120.3	+1	validated	p.S1046Y	1.000	313	0.3%	186	43.5%	28	50%	benign(0.055)	tolerated(1)	neutral(0.004)	HMMPfam_UDP-g_GGTase
RAB6C	84084	genome.wustl.edu	37	2	130737834	130737834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032144.2	+1	validated	p.D49G	1.000	667	0%	350	33.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
RAB6C	84084	genome.wustl.edu	37	2	130737977	130737977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032144.2	+1	validated	p.N97H	1.000	961	0%	367	38.7%	18	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
SMPD4	55627	genome.wustl.edu	37	2	130912814	130912814	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000457039	-1	known	p.E71*	1.000	54	0%	45	42.2%	78	53.8%	possibly_damaging(0.744)	tolerated(0.15)	deleterious(0.514)	NULL
LOC653781	653781	genome.wustl.edu	37	2	131414244	131414244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929706.3	+1	model	p.K637N	0.024	94	0%	216	22.2%	0	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
LOC653781	653781	genome.wustl.edu	37	2	131414507	131414507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929706.3	+1	model	p.R725I	1.000	86	0%	116	31.9%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
FAM123C	205147	genome.wustl.edu	37	2	131520122	131520122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105193.1	+1	validated	p.C159*	0.993	8	0.000	17	0.647	0	-	-	-	-	HMMPfam_WTX
ARHGEF4	50649	genome.wustl.edu	37	2	131785559	131785559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015320.2	+1	reviewed	p.E157K	0.993	18	0%	22	45.5%	0	-	possibly_damaging(0.758)	deleterious(0.01)	deleterious(0.686)	NULL
POTEE	445582	genome.wustl.edu	37	2	132010494	132010494	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083538.1	+1	validated	p.E534*	0.012	960	0%	369	27.1%	0	-	-	-	-	NULL
POTEE	445582	genome.wustl.edu	37	2	132021121	132021121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083538.1	+1	validated	p.E698G	0.987	77	0%	149	49%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
LOC150786	150786	genome.wustl.edu	37	2	132121128	132121128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077637.1	-1	validated	p.Y56H	1.000	648	0%	317	34.4%	0	-	-	-	-	HMMSmart_RAB,HMMPfam_Ras,PatternScan_BACTERIAL_OPSIN_RET,superfamily_SSF52540
TUBA3D	113457	genome.wustl.edu	37	2	132240410	132240410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080386.2	+1	validated	p.E448K	0.999	144	0%	141	46.8%	1	100%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ZNF806	646915	genome.wustl.edu	37	2	133074786	133074786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001724242.2	+1	model	p.L83V	0.003	57	0%	67	28.4%	0	-	-	-	-	NULL
ZNF806	646915	genome.wustl.edu	37	2	133075962	133075962	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001724242.2	+1	model	p.E475*	1.000	171	0%	122	15.6%	0	-	-	-	-	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133547619	133547619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207363.2	-1	validated	p.D357N	1.000	249	0%	48	45.8%	1	0%	benign(0.049)	deleterious(0.04)	neutral(0.352)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133887571	133887571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207363.2	-1	validated	p.S107N	0.433	199	0%	36	58.3%	2	50%	possibly_damaging(0.527)	deleterious(0.04)	deleterious(0.527)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133971307	133971307	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000427594	-1	known	p.E59*	0.993	208	0%	41	41.5%	2	50%	benign(0.033)	deleterious(0)	neutral(0.446)	NULL
MGAT5	4249	genome.wustl.edu	37	2	135107416	135107416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002410.3	+1	validated	p.E385K	1.000	279	0%	60	48.3%	25	56%	possibly_damaging(0.942)	tolerated(0.33)	neutral(0.411)	NULL
YSK4	80122	genome.wustl.edu	37	2	135744243	135744243	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025052.3	-1	validated	p.K733	0.998	66	0%	60	31.7%	0	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135749143	135749143	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025052.3	-1	validated	p.S194	0.005	123	0%	150	40.7%	0	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135757538	135757538	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025052.3	-1	validated	p.E95*	1.000	388	0%	345	39.4%	0	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135782210	135782210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025052.3	-1	validated	p.S3Y	1.000	117	0%	500	45.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZRANB3	84083	genome.wustl.edu	37	2	135988495	135988495	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032143.2	-1	provisional	p.F514	0.998	88	0%	98	51%	3	66.6%	-	-	-	NULL
R3HDM1	23518	genome.wustl.edu	37	2	136362499	136362499	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000456040	+1	known	p.E25G	1.000	42	0%	101	48.5%	16	43.7%	-	-	-	NULL
LCT	3938	genome.wustl.edu	37	2	136548294	136548294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002299.2	-1	reviewed	p.E1757K	0.953	277	0%	157	43.9%	0	-	benign(0.07)	tolerated(0.51)	neutral(0.014)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136558293	136558293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002299.2	-1	reviewed	p.D1584N	0.890	68	0%	59	42.4%	0	-	possibly_damaging(0.92)	tolerated(0.18)	neutral(0.427)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
THSD7B	80731	genome.wustl.edu	37	2	138030122	138030122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080427.1	+1	provisional	p.Q731H	1.000	280	0%	53	26.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
THSD7B	80731	genome.wustl.edu	37	2	138373881	138373881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080427.1	+1	provisional	p.L1158R	0.998	170	0%	28	21.4%	0	-	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NXPH2	11249	genome.wustl.edu	37	2	139428991	139428991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007226.2	-1	validated	p.R99Q	1.000	372	0%	152	42.8%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Neurexophilin
LRP1B	53353	genome.wustl.edu	37	2	141526904	141526904	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018557.2	-1	validated	p.S1879*	1.000	88	1.1%	26	23.1%	0	-	-	-	-	superfamily_SSF57196,superfamily_SSF63825
KYNU	8942	genome.wustl.edu	37	2	143798107	143798107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003937.2	+1	reviewed	p.K384N	0.144	214	0%	34	41.2%	5	0%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
GTDC1	79712	genome.wustl.edu	37	2	144966241	144966241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006636.3	-1	validated	p.K36N	1.000	145	0%	41	46.3%	33	48.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145157643	145157643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014795.3	-1	reviewed	p.N371D	1.000	155	0%	88	39.8%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145274906	145274906	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014795.3	-1	reviewed	p.P4	1.000	134	0%	84	47.6%	1	0%	-	-	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149227747	149227747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018328.4	+1	reviewed	p.N745K	1.000	108	0%	31	45.2%	7	57.1%	unknown(0)	tolerated(0.06)	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149240764	149240764	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000416015	+1	known	p.A608V	0.882	247	0%	69	44.9%	6	66.6%	-	-	-	NULL
MBD5	55777	genome.wustl.edu	37	2	149243368	149243368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018328.4	+1	reviewed	p.S968L	1.000	45	0%	30	63.3%	8	37.5%	unknown(0)	deleterious(0.05)	-	NULL
EPC2	26122	genome.wustl.edu	37	2	149528402	149528402	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015630.3	+1	validated	p.E424	0.730	223	0%	148	44.6%	19	42.1%	-	-	-	NULL
EPC2	26122	genome.wustl.edu	37	2	149543944	149543944	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015630.3	+1	validated	p.*808Q	1.000	279	0%	99	46.5%	28	50%	-	-	-	NULL
KIF5C	3800	genome.wustl.edu	37	2	149818537	149818537	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000435030	+1	known	p.E341*	1.000	121	0%	137	43.1%	1	0%	-	-	-	NULL
KIF5C	3800	genome.wustl.edu	37	2	149837886	149837886	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000435030	+1	known	p.R460	0.996	159	0%	40	47.5%	0	-	-	-	-	NULL
KIF5C	3800	genome.wustl.edu	37	2	149854983	149854983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000435030	+1	known	p.E724K	1.000	89	0%	33	33.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
LYPD6B	130576	genome.wustl.edu	37	2	150064872	150064872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177964.3	+1	provisional	p.A92T	1.000	194	0%	150	44%	2	50%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	HMMSmart_LU,superfamily_SSF57302
NMI	9111	genome.wustl.edu	37	2	152128218	152128218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004688.2	-1	reviewed	p.E221D	0.726	188	0%	224	42.9%	31	48.3%	benign(0.002)	tolerated(0.71)	neutral(0.002)	HMMPfam_NID
RIF1	55183	genome.wustl.edu	37	2	152311665	152311665	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018151.4	+1	reviewed	p.E867D	1.000	71	0%	75	52%	2	0%	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152317676	152317676	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018151.4	+1	reviewed	p.K1034Q	0.494	68	0%	87	47.1%	6	66.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152357940	152357940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000509223	-1	known	p.E769K	1.000	174	0%	114	40.4%	0	-	possibly_damaging(0.888)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152359319	152359319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000421461	-1	known	p.E149*	0.997	138	0%	95	46.3%	0	-	possibly_damaging(0.891)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152363424	152363424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.S6151L	1.000	141	0%	110	42.7%	2	0%	probably_damaging(0.999)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152369286	152369286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.E6068D	1.000	229	0%	130	41.5%	1	0%	benign(0.009)	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152376270	152376270	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.E5797*	1.000	596	0.2%	306	40.5%	1	0%	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152384087	152384087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.K5549Q	1.000	171	0%	34	32.4%	1	100%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152417609	152417609	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.E4671V	1.000	401	0%	131	44.3%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152501079	152501079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.R2516Q	1.000	161	0%	125	48.8%	0	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152521064	152521064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.D1801G	1.000	238	0%	97	45.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152553197	152553197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004543.4	-1	reviewed	p.S508Y	1.000	658	0%	291	44%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Nebulin,HMMSmart_SM00227
CACNB4	785	genome.wustl.edu	37	2	152733011	152733011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000726.3	-1	reviewed	p.F150L	1.000	136	0.7%	253	44.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SH3-domain
LOC100127920	100127920	genome.wustl.edu	37	2	152954955	152954955	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001715860.2	+1	model	p.E34	0.996	25	0%	23	43.5%	0	-	-	-	-	NULL
ARL6IP6	151188	genome.wustl.edu	37	2	153616395	153616395	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_024526.1	+1	validated	NULL	0.245	127	0%	30	53.3%	34	35.2%	-	-	-	-
KCNJ3	3760	genome.wustl.edu	37	2	155711564	155711564	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002239.2	+1	reviewed	p.K415	1.000	73	0%	40	52.5%	0	-	-	-	-	NULL
GALNT5	11227	genome.wustl.edu	37	2	158152297	158152297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014568.1	+1	provisional	p.D622Y	1.000	233	0%	164	51.8%	0	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
ERMN	57471	genome.wustl.edu	37	2	158181230	158181230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009959.1	-1	validated	p.D109Y	1.000	172	0%	109	42.2%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
CCDC148	130940	genome.wustl.edu	37	2	159107421	159107421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138803.3	-1	validated	p.R372C	0.998	286	0%	62	41.9%	0	-	benign(0.314)	tolerated(0.12)	neutral(0.359)	NULL
PKP4	8502	genome.wustl.edu	37	2	159477866	159477866	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003628.3	+1	reviewed	p.S179*	1.000	218	0%	69	20.3%	10	0%	-	-	-	NULL
TANC1	85461	genome.wustl.edu	37	2	160025809	160025809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033394.2	+1	validated	p.R332I	1.000	197	0%	100	18%	7	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WDSUB1	151525	genome.wustl.edu	37	2	160112755	160112755	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128212.1	-1	validated	p.E362*	1.000	176	0%	150	46%	7	14.2%	-	-	-	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
WDSUB1	151525	genome.wustl.edu	37	2	160136297	160136297	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128212.1	-1	validated	p.C186	0.761	69	0%	77	40.3%	6	83.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BAZ2B	29994	genome.wustl.edu	37	2	160176867	160176867	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013450.2	-1	validated	p.F2139C	1.000	185	0%	105	55.2%	16	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
BAZ2B	29994	genome.wustl.edu	37	2	160310261	160310261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013450.2	-1	validated	p.S66L	1.000	204	0%	50	58%	6	33.3%	possibly_damaging(0.462)	tolerated(0.06)	deleterious(0.474)	NULL
LY75	4065	genome.wustl.edu	37	2	160697387	160697387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002349.2	-1	validated	p.K1120N	0.665	178	0%	86	43%	9	44.4%	probably_damaging(0.995)	tolerated(0.66)	neutral(0.460)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
LY75	4065	genome.wustl.edu	37	2	160755210	160755210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002349.2	-1	validated	p.Q152R	0.935	40	0%	27	48.1%	3	66.6%	probably_damaging(0.99)	tolerated(0.82)	neutral(0.442)	superfamily_Ricin B-like lectins
PLA2R1	22925	genome.wustl.edu	37	2	160813075	160813075	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007366.3	-1	validated	p.F990V	0.403	227	0%	65	46.2%	0	-	benign(0.215)	tolerated(1)	neutral(0.021)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160832605	160832605	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007366.3	-1	validated	p.E857*	1.000	311	0%	88	43.2%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160876648	160876648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007366.3	-1	validated	p.R474I	0.818	202	0%	59	50.8%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ITGB6	3694	genome.wustl.edu	37	2	160964291	160964291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000888.3	-1	provisional	p.G723R	1.000	215	0%	80	42.5%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC4A10	57282	genome.wustl.edu	37	2	162660965	162660965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022058.3	+1	reviewed	p.R46Q	1.000	340	0%	41	46.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
SLC4A10	57282	genome.wustl.edu	37	2	162711620	162711620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022058.3	+1	reviewed	p.N186S	1.000	343	0%	86	46.5%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A10	57282	genome.wustl.edu	37	2	162815051	162815051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022058.3	+1	reviewed	p.L920I	1.000	269	0%	149	49%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_HCO3_cotransp,PatternScan_HTH_ARAC_FAMILY_1
DPP4	1803	genome.wustl.edu	37	2	162870926	162870926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001935.3	-1	reviewed	p.K539N	1.000	149	0%	70	42.9%	6	50%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	superfamily_alpha/beta-Hydrolases
DPP4	1803	genome.wustl.edu	37	2	162881408	162881408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001935.3	-1	reviewed	p.R310I	0.987	188	0%	51	47.1%	4	50%	possibly_damaging(0.571)	deleterious(0)	deleterious(0.640)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
KCNH7	90134	genome.wustl.edu	37	2	163292008	163292008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033272.2	-1	reviewed	p.L552I	1.000	187	0%	34	35.3%	0	-	possibly_damaging(0.584)	deleterious(0.03)	deleterious(0.566)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNH7	90134	genome.wustl.edu	37	2	163693051	163693051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033272.2	-1	reviewed	p.K101N	1.000	78	0%	38	55.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PYP-like sensor domain (PAS domain)
COBLL1	22837	genome.wustl.edu	37	2	165557219	165557219	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014900.3	-1	validated	p.E464*	1.000	152	0%	110	42.7%	13	53.8%	-	-	-	NULL
SCN3A	6328	genome.wustl.edu	37	2	165947416	165947416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006922.3	-1	reviewed	p.F1749L	1.000	426	0%	110	44.5%	0	-	benign(0.256)	tolerated(0.42)	neutral(0.041)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165952064	165952064	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006922.3	-1	reviewed	p.F1463C	1.000	205	0%	133	37.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	165953957	165953957	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006922.3	-1	reviewed	p.I1348	0.999	216	0%	71	54.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166165920	166165920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040142.1	+1	reviewed	p.L222I	1.000	337	0%	102	56.9%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166198878	166198878	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040142.1	+1	reviewed	p.E821*	1.000	401	0%	279	47.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166201335	166201335	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040142.1	+1	reviewed	p.E945*	1.000	408	0%	131	19.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166243360	166243360	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040142.1	+1	reviewed	p.T1552	0.087	781	0%	71	12.7%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
CSRNP3	80034	genome.wustl.edu	37	2	166533084	166533084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024969.3	+1	validated	p.T224M	1.000	68	0.000	9	0.889	1	100%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
TTC21B	79809	genome.wustl.edu	37	2	166758272	166758272	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024753.3	-1	validated	p.F906C	1.000	128	0%	57	38.6%	7	57.1%	benign(0.37)	tolerated(0.22)	neutral(0.160)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TTC21B	79809	genome.wustl.edu	37	2	166786853	166786853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024753.3	-1	validated	p.L306I	1.000	107	0%	48	54.2%	4	75%	probably_damaging(0.973)	tolerated(0.11)	deleterious(0.686)	superfamily_TPR-like
SCN1A	6323	genome.wustl.edu	37	2	166847798	166847798	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006920.4	-1	reviewed	p.K1985T	1.000	424	0%	137	46%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCN1A	6323	genome.wustl.edu	37	2	166897932	166897932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006920.4	-1	reviewed	p.S731A	1.000	81	0%	53	32.1%	0	-	benign(0)	tolerated(1)	-	NULL
SCN1A	6323	genome.wustl.edu	37	2	166929990	166929990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006920.4	-1	reviewed	p.G48C	1.000	403	0%	246	48.4%	0	-	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	superfamily_SSF81324
SCN9A	6335	genome.wustl.edu	37	2	167089906	167089906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002977.3	-1	reviewed	p.R1279W	0.996	116	0%	67	47.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167094768	167094768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002977.3	-1	reviewed	p.D1202Y	1.000	35	0%	35	42.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167134663	167134663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002977.3	-1	reviewed	p.R824Q	1.000	97	0%	45	57.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167263003	167263003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002976.2	-1	validated	p.A1379E	0.994	153	0%	25	44%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167263064	167263064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002976.2	-1	validated	p.L1359I	0.916	75	0%	12	41.7%	0	-	possibly_damaging(0.93)	deleterious(0.01)	deleterious(0.782)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167279781	167279781	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002976.2	-1	validated	p.F1005	0.997	109	0%	34	38.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167313429	167313429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002976.2	-1	validated	p.K414T	0.950	177	0%	96	44.8%	0	-	benign(0.045)	tolerated(0.08)	neutral(0.302)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167322357	167322357	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002976.2	-1	validated	p.R269*	0.063	233	0%	94	47.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	167760391	167760391	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152381.4	+1	validated	p.Y133	0.000	208	0%	27	55.6%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168100135	168100135	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152381.4	+1	validated	p.R745	1.000	66	0%	24	50%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168100471	168100471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152381.4	+1	validated	p.P857T	0.003	44	0%	27	48.1%	0	-	probably_damaging(0.961)	tolerated(0.16)	neutral(0.464)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168102643	168102643	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152381.4	+1	validated	p.R1581*	0.994	48	0%	16	50%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168106833	168106833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152381.4	+1	validated	p.Q2977H	0.996	50	0%	11	45.5%	0	-	probably_damaging(0.959)	tolerated(0.09)	deleterious(0.699)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168726189	168726189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020981.2	+1	reviewed	p.R214W	0.987	191	0%	121	52.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
NOSTRIN	115677	genome.wustl.edu	37	2	169668124	169668124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039724.3	+1	validated	p.E25D	1.000	235	0%	113	42.5%	1	0%	benign(0.084)	tolerated(0.58)	neutral(0.011)	HMMPfam_FCH
G6PC2	57818	genome.wustl.edu	37	2	169757987	169757987	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021176.2	+1	reviewed	p.F49C	1.000	251	0%	279	43%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
ABCB11	8647	genome.wustl.edu	37	2	169825990	169825990	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003742.2	-1	reviewed	p.I627	1.000	186	0%	26	42.3%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB11	8647	genome.wustl.edu	37	2	169842773	169842773	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003742.2	-1	reviewed	p.F310	0.994	137	0%	39	51.3%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB11	8647	genome.wustl.edu	37	2	169869895	169869895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003742.2	-1	reviewed	p.D92E	0.033	217	0.5%	27	48.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LRP2	4036	genome.wustl.edu	37	2	170030640	170030640	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.C3601	0.975	68	0%	27	55.6%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170044495	170044495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.D3105N	1.000	146	0%	28	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170044619	170044619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.E3063D	1.000	234	0%	44	47.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170060656	170060656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.R2614I	0.518	194	0%	65	89.2%	0	-	benign(0.246)	deleterious(0.01)	neutral(0.431)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170062935	170062935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.R2432I	1.000	189	0%	66	37.9%	0	-	benign(0.106)	deleterious(0)	neutral(0.453)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170101261	170101261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.K1124N	0.000	263	0%	82	40.2%	0	-	benign(0.3)	tolerated(0.51)	neutral(0.102)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170115660	170115660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.K796N	1.000	209	0%	64	46.9%	0	-	benign(0.187)	tolerated(0.16)	neutral(0.077)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170115722	170115722	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.E776*	1.000	148	0%	57	40.4%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170136004	170136004	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.I481	0.999	131	0%	51	35.3%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170136020	170136020	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.W476*	1.000	131	0%	54	48.1%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825
LRP2	4036	genome.wustl.edu	37	2	170139420	170139420	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004525.2	-1	reviewed	p.I378	0.558	159	0%	47	29.8%	0	-	-	-	-	HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2
BBS5	129880	genome.wustl.edu	37	2	170356010	170356010	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152384.2	+1	reviewed	p.V232	0.998	92	0%	175	40%	7	28.5%	-	-	-	HMMPfam_DUF1448
FASTKD1	79675	genome.wustl.edu	37	2	170401338	170401338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024622.3	-1	validated	p.P570H	0.999	77	0%	60	40%	11	54.5%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
FASTKD1	79675	genome.wustl.edu	37	2	170416927	170416927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024622.3	-1	validated	p.G314E	1.000	62	0%	96	42.7%	11	81.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPIG	9360	genome.wustl.edu	37	2	170487411	170487411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004792.2	+1	validated	p.E225D	0.991	19	0%	12	58.3%	35	37.1%	unknown(0)	tolerated(0.32)	-	NULL
PPIG	9360	genome.wustl.edu	37	2	170493171	170493171	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004792.2	+1	validated	p.S468*	1.000	69	0%	83	13.3%	39	12.8%	-	-	-	NULL
UBR3	130507	genome.wustl.edu	37	2	170751735	170751735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172070.3	+1	validated	p.E384*	1.000	69	0%	58	41.4%	3	0%	-	-	-	NULL
TLK1	9874	genome.wustl.edu	37	2	171902810	171902810	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012290.4	-1	validated	p.K348T	1.000	1031	0%	286	43.7%	27	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLK1	9874	genome.wustl.edu	37	2	171910290	171910290	+	Missense_Mutation	SNP	C	C	T	rs181931991	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012290.4	-1	validated	p.R238H	1.000	447	0%	151	42.4%	25	48%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
ITGA6	3655	genome.wustl.edu	37	2	173335803	173335803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079818.1	+1	reviewed	p.L249I	1.000	170	0%	78	51.3%	47	36.1%	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	superfamily_Integrin alpha N-terminal domain
ITGA6	3655	genome.wustl.edu	37	2	173368827	173368827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079818.1	+1	reviewed	p.F1041L	1.000	131	0%	70	38.6%	59	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_INTEGRIN_ALPHA
RAPGEF4	11069	genome.wustl.edu	37	2	173866043	173866043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007023.3	+1	validated	p.N543K	1.000	389	0%	196	40.8%	2	100%	possibly_damaging(0.905)	tolerated(0.08)	deleterious(0.659)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
ZAK	51776	genome.wustl.edu	37	2	173955789	173955789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016653.2	+1	reviewed	p.Q10H	1.000	193	0%	72	40.3%	6	33.3%	benign(0.064)	tolerated(0.2)	neutral(0.053)	superfamily_Protein kinase-like (PK-like)
SP3	6670	genome.wustl.edu	37	2	174774847	174774847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003111.4	-1	reviewed	p.R723Q	0.994	400	0%	116	38.8%	57	50.8%	benign(0.045)	tolerated(0.17)	neutral(0.061)	NULL
SP3	6670	genome.wustl.edu	37	2	174820671	174820671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003111.4	-1	reviewed	p.G190D	1.000	97	0%	97	55.7%	38	42.1%	benign(0.08)	tolerated(0.22)	neutral(0.048)	NULL
SCRN3	79634	genome.wustl.edu	37	2	175289282	175289282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024583.3	+1	validated	p.D333Y	1.000	141	0%	140	46.4%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CHN1	1123	genome.wustl.edu	37	2	175742697	175742697	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001822.4	-1	reviewed	p.N140	1.000	402	0%	184	50%	1	0%	-	-	-	NULL
ATF2	1386	genome.wustl.edu	37	2	176001146	176001146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001880.2	-1	reviewed	p.S9Y	1.000	121	0%	32	40.6%	29	51.7%	unknown(0)	-	-	NULL
HOXD10	3236	genome.wustl.edu	37	2	176982173	176982173	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002148.3	+1	reviewed	p.P204	0.262	4	0.000	16	0.688	1	0%	-	-	-	NULL
HOXD10	3236	genome.wustl.edu	37	2	176983832	176983832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002148.3	+1	reviewed	p.I299T	1.000	33	0%	56	41.1%	4	0%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
MIR10B	406903	genome.wustl.edu	37	2	177015132	177015132	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385011	+1	known	NULL	1.000	38	0%	154	53.9%	0	-	-	-	-	-
HOXD3	3232	genome.wustl.edu	37	2	177033961	177033961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006898.4	+1	reviewed	p.T40N	1.000	88	0%	61	42.6%	0	-	benign(0.067)	deleterious(0.01)	neutral(0.410)	NULL
HOXD1	3231	genome.wustl.edu	37	2	177054708	177054708	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024501.1	+1	reviewed	p.I275	0.998	71	0%	77	40.3%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
TTC30B	150737	genome.wustl.edu	37	2	178415563	178415563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152517.2	-1	validated	p.K643N	1.000	213	0%	234	41.5%	8	75%	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	NULL
TTC30B	150737	genome.wustl.edu	37	2	178417030	178417030	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152517.2	-1	validated	p.T154	0.021	121	0%	71	45.1%	8	37.5%	-	-	-	HMMSmart_SM00028,superfamily_TPR-like
TTC30A	92104	genome.wustl.edu	37	2	178482488	178482488	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152275.3	-1	validated	p.Q314	1.000	113	0%	116	41.4%	9	33.3%	-	-	-	superfamily_SSF48452
PDE11A	50940	genome.wustl.edu	37	2	178528606	178528606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016953.3	-1	reviewed	p.M878I	1.000	112	0.9%	24	41.7%	1	100%	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
DFNB59	494513	genome.wustl.edu	37	2	179325938	179325938	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042702.3	+1	reviewed	p.G332	0.992	147	0%	294	39.5%	6	66.6%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179391750	179391750	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.R33419*	1.000	260	0%	78	35.9%	0	-	-	-	-	HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179397883	179397883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.L31917I	1.000	302	0%	113	39.8%	0	-	benign(0.195)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179401251	179401251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.S30838Y	1.000	51	0%	35	57.1%	0	-	probably_damaging(0.995)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179408831	179408831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.L29444I	1.000	120	0%	52	44.2%	0	-	possibly_damaging(0.94)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179411975	179411975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.S28856Y	0.954	160	0%	59	49.2%	0	-	possibly_damaging(0.918)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179424085	179424085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.F26355S	1.000	101	1%	69	46.4%	0	-	possibly_damaging(0.947)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179426306	179426306	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.R25615*	0.846	135	0%	45	40%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179426831	179426831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.N25440D	1.000	36	0%	29	41.4%	0	-	probably_damaging(0.992)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179430126	179430126	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.I24341M	0.998	220	0%	76	36.8%	0	-	benign(0.085)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179432554	179432554	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133378.4	-1	reviewed	p.E23534*	1.000	107	0.9%	47	42.6%	0	-	possibly_damaging(0.847)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179434376	179434376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.V22925I	1.000	174	0%	114	46.5%	0	-	possibly_damaging(0.444)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179434600	179434600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.S22850Y	1.000	273	0%	164	38.4%	0	-	possibly_damaging(0.922)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179435530	179435530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.R22540Q	0.150	290	0%	124	47.6%	0	-	possibly_damaging(0.939)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179437711	179437711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.S21813L	1.000	108	0%	49	36.7%	0	-	possibly_damaging(0.893)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179438099	179438099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.I21684V	1.000	69	0%	33	42.4%	0	-	possibly_damaging(0.643)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179441086	179441086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.S20688Y	1.000	84	2.4%	36	36.1%	2	50%	probably_damaging(0.958)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179442499	179442499	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133378.4	-1	reviewed	p.R20317*	0.258	154	0%	67	37.3%	1	0%	benign(0.027)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179454700	179454700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.E18014D	0.997	157	0%	70	32.9%	0	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179454957	179454957	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.R17929*	0.782	190	0%	60	45%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179458404	179458404	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133378.4	-1	reviewed	p.F16973C	0.991	99	0%	46	39.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179469607	179469607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.R15502I	1.000	262	0%	49	44.9%	0	-	benign(0.014)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179470313	179470313	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.R15335	0.983	204	0%	42	42.9%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179473579	179473579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.L14819I	0.889	257	0%	78	38.5%	0	-	benign(0.29)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179476841	179476841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.R14198Q	1.000	249	0%	72	43.1%	0	-	benign(0.098)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179477260	179477260	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.T14096	0.984	364	0%	58	60.3%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179480413	179480413	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.E13571*	1.000	166	0%	30	30%	1	100%	-	-	-	HMMPfam_fn3
TTN	7273	genome.wustl.edu	37	2	179494171	179494171	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	e188-1	1.000	119	0.8%	28	39.3%	0	-	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179494991	179494991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.S12185Y	1.000	60	0%	23	60.9%	0	-	possibly_damaging(0.741)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179495861	179495861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.K12070N	1.000	187	0%	41	51.2%	0	-	benign(0.29)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179548796	179548796	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.P9668	0.364	179	0%	165	43%	0	-	-	-	-	HMMPfam_PPAK
TTN	7273	genome.wustl.edu	37	2	179560811	179560811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.T9086A	0.945	445	0%	276	42%	0	-	unknown(0)	tolerated(0.57)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179569972	179569972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.T8601A	1.000	144	0%	66	43.9%	0	-	unknown(0)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179579173	179579173	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.I7532	0.921	89	0%	19	36.8%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179583464	179583464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.D6911Y	1.000	66	0%	26	46.2%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179583965	179583965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.D6807G	1.000	76	0%	16	37.5%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179585132	179585132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.S6542Y	0.002	165	0%	64	39.1%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179586802	179586802	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.E6286*	1.000	240	0%	55	10.9%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179587508	179587508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.F6129C	0.999	89	0%	25	60%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179589096	179589096	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.I5758	0.991	128	0%	35	37.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179590711	179590711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.L5536I	1.000	117	0%	45	33.3%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179597208	179597208	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356127	-1	known	p.V4283A	0.379	84	0%	33	42.4%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179605316	179605316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000342175	-1	known	p.Q4044R	0.037	217	0%	59	50.8%	0	-	benign(0.049)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179605349	179605349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000342175	-1	known	p.T4033N	0.111	157	0%	60	11.7%	0	-	possibly_damaging(0.539)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179605619	179605619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000342175	-1	known	p.L3943S	0.061	176	0.6%	39	51.3%	0	-	probably_damaging(0.976)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179611025	179611025	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.E5368*	1.000	42	0%	10	50%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179611522	179611522	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.F5202C	1.000	145	0%	28	39.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179611644	179611644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.I5161M	0.000	187	0%	32	46.9%	0	-	benign(0.033)	tolerated(0.19)	neutral(0.051)	NULL
TTN	7273	genome.wustl.edu	37	2	179612236	179612236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.S4964Y	1.000	152	0%	39	41%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
TTN	7273	genome.wustl.edu	37	2	179612777	179612777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.E4784*	0.933	198	0%	37	37.8%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179612904	179612904	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.A4741	0.000	180	0%	45	37.8%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179614136	179614136	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.E4331*	1.000	112	0%	20	25%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179615482	179615482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.S3882Y	0.579	130	0%	27	48.1%	0	-	possibly_damaging(0.563)	deleterious(0.02)	deleterious(0.576)	NULL
TTN	7273	genome.wustl.edu	37	2	179616136	179616136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.S3664Y	0.012	224	0%	74	47.3%	0	-	benign(0.234)	deleterious(0.01)	neutral(0.429)	NULL
TTN	7273	genome.wustl.edu	37	2	179616429	179616429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.E3566D	1.000	67	0%	28	28.6%	0	-	benign(0.395)	tolerated(0.6)	neutral(0.132)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179633613	179633613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.D2984Y	1.000	332	0%	127	43.3%	0	-	benign(0.127)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179638266	179638266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.R2506Q	1.000	317	0%	56	44.6%	0	-	benign(0.287)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179647147	179647147	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.E1058*	1.000	64	0%	54	48.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179659183	179659183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133379.3	-1	reviewed	p.E447D	1.000	175	0%	40	37.5%	0	-	possibly_damaging(0.791)	tolerated(0.06)	deleterious(0.619)	HMMPfam_Titin_Z
CCDC141	285025	genome.wustl.edu	37	2	179737031	179737031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173648.2	-1	provisional	p.E61D	0.004	420	0%	160	46.3%	0	-	benign(0.055)	tolerated(0.61)	neutral(0.007)	NULL
ZNF385B	151126	genome.wustl.edu	37	2	180634449	180634449	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152520.4	-1	validated	p.E12*	1.000	93	0%	50	32%	1	0%	-	-	-	NULL
CWC22	57703	genome.wustl.edu	37	2	180837941	180837941	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020943.2	-1	validated	p.A261	0.283	117	0%	68	52.9%	8	37.5%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
ITGA4	3676	genome.wustl.edu	37	2	182399043	182399043	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000885.4	+1	reviewed	p.F943	0.994	131	0%	38	39.5%	1	0%	-	-	-	superfamily_Integrin domains
CERKL	375298	genome.wustl.edu	37	2	182413310	182413310	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001030311.2	-1	reviewed	p.S391	1.000	404	0%	125	53.6%	1	0%	-	-	-	NULL
SSFA2	6744	genome.wustl.edu	37	2	182780226	182780226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130445.1	+1	validated	p.E620G	0.460	185	0%	62	45.2%	42	30.9%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
PDE1A	5136	genome.wustl.edu	37	2	183051292	183051292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005019.3	-1	validated	p.P427S	1.000	83	0%	35	45.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,superfamily_SSF109604
PDE1A	5136	genome.wustl.edu	37	2	183104942	183104942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005019.3	-1	validated	p.A98V	1.000	533	0%	223	44.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I_N
DNAJC10	54431	genome.wustl.edu	37	2	183584830	183584830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018981.1	+1	provisional	p.E101*	1.000	92	0%	131	40.5%	37	8.1%	-	-	-	superfamily_Chaperone J-domain
DNAJC10	54431	genome.wustl.edu	37	2	183595762	183595762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018981.1	+1	provisional	p.F245V	1.000	197	0%	111	45%	61	4.9%	benign(0.013)	tolerated(0.21)	neutral(0.044)	superfamily_Thioredoxin-like
NCKAP1	10787	genome.wustl.edu	37	2	183866908	183866908	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_205842.1	-1	validated	p.R159	1.000	390	0%	191	41.9%	39	48.7%	-	-	-	HMMPfam_Nckap1
ZNF804A	91752	genome.wustl.edu	37	2	185802234	185802234	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194250.1	+1	provisional	p.S704*	0.010	119	0%	65	35.4%	0	-	-	-	-	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185802718	185802718	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194250.1	+1	provisional	p.I865	0.000	81	0%	47	40.4%	0	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671207	186671207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000424728	+1	known	p.S5725L	0.000	50	0%	24	54.2%	1	100%	benign(0.012)	tolerated(0.42)	neutral(0.015)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186671435	186671435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000424728	+1	known	p.S5801Y	0.863	83	0%	27	18.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186672797	186672797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000424728	+1	known	p.S6255Y	0.835	19	0.000	9	0.556	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186673360	186673360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000424728	+1	known	p.I6443V	0.133	46	0%	25	52%	1	0%	possibly_damaging(0.597)	deleterious(0.02)	deleterious(0.590)	NULL
ZC3H15	55854	genome.wustl.edu	37	2	187364956	187364956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018471.2	+1	validated	p.K75N	1.000	97	0%	179	26.8%	83	31.3%	possibly_damaging(0.916)	tolerated(0.14)	deleterious(0.617)	NULL
ZC3H15	55854	genome.wustl.edu	37	2	187373361	187373361	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018471.2	+1	validated	p.N394	0.997	418	0%	245	35.1%	243	37%	-	-	-	NULL
ITGAV	3685	genome.wustl.edu	37	2	187490225	187490225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002210.3	+1	reviewed	p.R145I	1.000	191	0%	129	25.6%	11	45.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Integrin alpha N-terminal domain
ITGAV	3685	genome.wustl.edu	37	2	187490269	187490269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002210.3	+1	reviewed	p.L160I	1.000	189	0%	133	36.1%	15	33.3%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	superfamily_Integrin alpha N-terminal domain
FAM171B	165215	genome.wustl.edu	37	2	187605095	187605095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177454.3	+1	validated	p.V127L	0.944	209	0%	138	25.4%	5	60%	possibly_damaging(0.937)	tolerated(0.48)	neutral(0.394)	HMMPfam_UPF0560
FAM171B	165215	genome.wustl.edu	37	2	187608254	187608254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177454.3	+1	validated	p.N173H	1.000	209	0%	155	58.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UPF0560
ZSWIM2	151112	genome.wustl.edu	37	2	187703849	187703849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182521.2	-1	validated	p.R111W	0.001	188	0%	50	40%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
CALCRL	10203	genome.wustl.edu	37	2	188248029	188248029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005795.4	-1	validated	p.L19I	0.009	193	0%	87	36.8%	2	0%	possibly_damaging(0.442)	tolerated(0.31)	neutral(0.171)	NULL
CALCRL	10203	genome.wustl.edu	37	2	188250289	188250289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005795.4	-1	validated	p.L12I	0.788	59	0%	49	46.9%	2	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
TFPI	7035	genome.wustl.edu	37	2	188368408	188368408	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006287.4	-1	reviewed	p.S30A	0.000	213	0%	61	41%	3	0%	benign(0.004)	tolerated(0.2)	neutral(0.049)	NULL
COL3A1	1281	genome.wustl.edu	37	2	189870106	189870106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000090.3	+1	reviewed	p.L988I	0.000	60	0%	45	62.2%	143	0%	possibly_damaging(0.543)	tolerated(0.09)	deleterious(0.480)	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189898828	189898828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000393.3	-1	reviewed	p.G1490S	1.000	318	0%	27	44.4%	46	4.3%	probably_damaging(0.995)	-	-	HMMPfam_COLFI,HMMSmart_COLFI
SLC40A1	30061	genome.wustl.edu	37	2	190430214	190430214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014585.5	-1	reviewed	p.S209L	1.000	98	0%	52	46.2%	42	45.2%	benign(0.002)	tolerated(0.16)	neutral(0.059)	superfamily_MFS general substrate transporter
ANKAR	150709	genome.wustl.edu	37	2	190592706	190592706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144708.3	+1	validated	p.Q849H	0.000	253	0%	102	46.1%	0	-	benign(0.416)	tolerated(0.06)	neutral(0.457)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ANKAR	150709	genome.wustl.edu	37	2	190595302	190595302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144708.3	+1	validated	p.R1021I	0.996	268	0%	120	47.5%	0	-	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
OSGEPL1	64172	genome.wustl.edu	37	2	190626240	190626240	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022353.2	-1	validated	p.E43*	1.000	39	0%	98	49%	2	0%	-	-	-	superfamily_Actin-like ATPase domain
PMS1	5378	genome.wustl.edu	37	2	190728731	190728731	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000534.4	+1	reviewed	p.K707Q	0.957	61	0%	40	42.5%	23	82.6%	benign(0.104)	deleterious(0.01)	neutral(0.414)	NULL
MSTN	2660	genome.wustl.edu	37	2	190921990	190921990	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005259.2	-1	reviewed	p.C374	1.000	80	0%	51	51%	0	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
GLS	2744	genome.wustl.edu	37	2	191818309	191818309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014905.3	+1	validated	p.L557I	1.000	1290	0%	115	41.7%	1	100%	possibly_damaging(0.842)	tolerated(0.07)	deleterious(0.641)	superfamily_Ankyrin repeat
STAT1	6772	genome.wustl.edu	37	2	191841710	191841710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007315.3	-1	reviewed	p.L639I	1.000	192	0%	113	44.2%	119	20.1%	possibly_damaging(0.878)	deleterious(0)	deleterious(0.786)	HMMPfam_SH2,superfamily_SH2 domain
STAT4	6775	genome.wustl.edu	37	2	191922752	191922752	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003151.2	-1	reviewed	p.R400*	1.000	137	0%	92	54.3%	0	-	-	-	-	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind
SLC39A10	57181	genome.wustl.edu	37	2	196545401	196545401	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127257.1	+1	validated	p.E212A	0.312	58	0%	52	44.2%	5	40%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196642563	196642563	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.F3675	0.994	263	0%	120	39.2%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196659121	196659121	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.R3553*	1.000	300	0%	124	41.9%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196689119	196689119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.L3051I	0.997	123	0%	82	43.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196689132	196689132	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.I3046M	0.000	122	0%	80	43.8%	1	100%	benign(0.019)	tolerated(0.12)	neutral(0.262)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196722288	196722288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.L2743I	0.982	181	0%	57	52.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196726550	196726550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.D2543Y	0.001	153	0%	72	48.6%	0	-	benign(0.039)	deleterious(0.03)	neutral(0.366)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196737012	196737012	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.E2199*	0.785	174	0%	117	44.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196759835	196759835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.F1587L	1.000	129	0%	91	18.7%	0	-	benign(0.114)	tolerated(0.55)	neutral(0.016)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196791212	196791212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.L1184I	1.000	171	0%	88	34.1%	0	-	probably_damaging(0.997)	tolerated(0.37)	deleterious(0.485)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196801382	196801382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.F1071L	1.000	99	0%	38	50%	0	-	possibly_damaging(0.822)	deleterious(0.03)	deleterious(0.675)	HMMPfam_DHC_N2
DNAH7	56171	genome.wustl.edu	37	2	196822170	196822170	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018897.2	-1	validated	p.E965*	1.000	100	0%	27	37%	0	-	-	-	-	HMMPfam_DHC_N2
HECW2	57520	genome.wustl.edu	37	2	197122594	197122594	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020760.1	-1	provisional	p.P1124	0.987	76	0%	25	44%	3	0%	-	-	-	NULL
CCDC150	284992	genome.wustl.edu	37	2	197521832	197521832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080539.1	+1	provisional	p.A183V	0.962	144	0%	26	42.3%	6	66.6%	benign(0.142)	tolerated(0.24)	neutral(0.050)	NULL
PGAP1	80055	genome.wustl.edu	37	2	197711805	197711805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024989.3	-1	validated	p.T691M	0.995	85	0%	59	49.2%	4	75%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SF3B1	23451	genome.wustl.edu	37	2	198270162	198270162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012433.2	-1	reviewed	p.R425Q	1.000	57	0%	52	11.5%	81	12.3%	possibly_damaging(0.919)	deleterious(0.05)	deleterious(0.715)	HMMPfam_SF3b1
RFTN2	130132	genome.wustl.edu	37	2	198498690	198498690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144629.2	-1	validated	p.F157C	1.000	198	0%	103	53.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RFTN2	130132	genome.wustl.edu	37	2	198511352	198511352	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144629.2	-1	validated	p.L60	0.036	100	0%	93	34.4%	1	0%	-	-	-	NULL
PLCL1	5334	genome.wustl.edu	37	2	198949716	198949716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006226.3	+1	validated	p.G394V	0.996	139	0%	56	35.7%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_PI-PLC-X,HMMSmart_PLCXc,superfamily_PLC-like_Pdiesterase_TIM-brl
PLCL1	5334	genome.wustl.edu	37	2	198950790	198950790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006226.3	+1	validated	p.R752Q	1.000	454	0%	59	35.6%	1	0%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
SATB2	23314	genome.wustl.edu	37	2	200245104	200245104	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015265.3	-1	reviewed	p.E194*	1.000	145	0%	49	40.8%	1	0%	-	-	-	NULL
SPATS2L	26010	genome.wustl.edu	37	2	201337659	201337659	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100422.1	+1	validated	p.R389*	0.948	50	0%	38	60.5%	29	6.8%	-	-	-	NULL
AOX1	316	genome.wustl.edu	37	2	201492166	201492166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001159.3	+1	reviewed	p.L739I	0.985	203	0%	134	46.3%	0	-	benign(0.076)	tolerated(1)	neutral(0.005)	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain
AOX1	316	genome.wustl.edu	37	2	201507526	201507526	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001159.3	+1	reviewed	e25+2	1.000	119	0%	30	46.7%	0	-	-	-	-	-
BZW1	9689	genome.wustl.edu	37	2	201683057	201683057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014670.2	+1	validated	p.R254C	1.000	52	0%	71	47.9%	129	40.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM-type_fold
CLK1	1195	genome.wustl.edu	37	2	201721699	201721699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004071.3	-1	reviewed	p.S281I	1.000	308	0%	150	40.7%	30	40%	benign(0.182)	deleterious(0)	neutral(0.461)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ORC2	4999	genome.wustl.edu	37	2	201778122	201778122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006190.3	-1	reviewed	p.D515Y	1.000	58	0%	64	39.1%	29	48.2%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_ORC2
CASP8	841	genome.wustl.edu	37	2	202149880	202149880	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080125.1	+1	reviewed	p.E441*	0.312	116	0%	67	23.9%	9	11.1%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
TRAK2	66008	genome.wustl.edu	37	2	202252616	202252616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015049.2	-1	validated	p.F502L	1.000	121	0%	25	28%	12	25%	possibly_damaging(0.742)	tolerated(0.11)	deleterious(0.544)	NULL
STRADB	55437	genome.wustl.edu	37	2	202340410	202340410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018571.5	+1	reviewed	p.L165I	1.000	125	0%	166	38%	17	64.7%	possibly_damaging(0.853)	deleterious(0.05)	deleterious(0.674)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STRADB	55437	genome.wustl.edu	37	2	202343091	202343091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018571.5	+1	reviewed	p.Q279H	1.000	64	0%	57	40.4%	8	50%	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ALS2CR11	151254	genome.wustl.edu	37	2	202356833	202356833	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000439140	-1	known	p.R1411*	0.005	139	0%	207	47.8%	0	-	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202356962	202356962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000439140	-1	known	p.L1368V	0.003	47	0%	92	40.2%	0	-	probably_damaging(0.991)	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202400887	202400887	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152525.5	-1	validated	p.K455Q	0.003	396	0%	127	43.3%	0	-	possibly_damaging(0.49)	tolerated(0.09)	neutral(0.460)	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202466489	202466489	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152525.5	-1	validated	p.F163	0.986	191	0%	119	42.9%	0	-	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202466579	202466579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152525.5	-1	validated	p.F133L	0.901	159	0.6%	102	52%	0	-	possibly_damaging(0.851)	deleterious(0.05)	deleterious(0.672)	NULL
ALS2	57679	genome.wustl.edu	37	2	202587823	202587823	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000439495	-1	known	p.R536*	0.366	109	0%	120	41.7%	12	50%	-	-	-	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
FZD7	8324	genome.wustl.edu	37	2	202900492	202900492	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003507.1	+1	reviewed	p.I374	1.000	56	0%	24	54.2%	14	42.8%	-	-	-	HMMPfam_Frizzled
SUMO1	7341	genome.wustl.edu	37	2	203075460	203075460	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005781.1	-1	reviewed	p.E79*	1.000	105	0%	111	42.3%	161	54.6%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
NBEAL1	65065	genome.wustl.edu	37	2	203914576	203914576	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.D61	1.000	239	0.8%	188	43.6%	2	50%	-	-	-	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	203933140	203933140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.K180N	1.000	241	0%	235	43.8%	1	100%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	203942514	203942514	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.K213T	1.000	41	0%	93	47.3%	2	100%	probably_damaging(0.997)	tolerated(0.15)	deleterious(0.707)	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	203948035	203948035	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.E260*	1.000	262	0%	119	45.4%	0	-	-	-	-	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	203972159	203972159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.R400I	1.000	60	0%	138	50.7%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	203972491	203972491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.R481Q	1.000	160	0%	149	37.6%	1	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_ARM repeat
NBEAL1	65065	genome.wustl.edu	37	2	203995130	203995130	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.N1136	1.000	220	0%	212	44.3%	0	-	-	-	-	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204013738	204013738	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114132.1	+1	validated	p.R1748*	0.998	119	0%	74	56.8%	0	-	-	-	-	NULL
ABI2	10152	genome.wustl.edu	37	2	204244967	204244967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005759.4	+1	validated	p.E108*	1.000	99	0%	117	48.7%	33	39.3%	-	-	-	HMMPfam_Abi_HHR
PARD3B	117583	genome.wustl.edu	37	2	205983771	205983771	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152526.4	+1	validated	e7+1	1.000	57	0%	40	50%	0	-	-	-	-	-
PARD3B	117583	genome.wustl.edu	37	2	206023594	206023594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_057177.5	+1	validated	p.F528C	1.000	126	0%	56	55.4%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
NRP2	8828	genome.wustl.edu	37	2	206562428	206562428	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201266.1	+1	reviewed	p.I78	0.958	323	0%	68	45.6%	8	37.5%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
NDUFS1	4719	genome.wustl.edu	37	2	206991495	206991495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005006.5	-1	reviewed	p.L653R	1.000	196	0%	182	37.4%	51	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53706
ZDBF2	57683	genome.wustl.edu	37	2	207175683	207175683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020923.1	+1	validated	p.R2144I	0.001	19	0%	25	16%	0	-	benign(0.099)	-	-	NULL
ADAM23	8745	genome.wustl.edu	37	2	207425919	207425919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003812.2	+1	reviewed	p.G413*	1.000	304	0%	144	47.9%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
FASTKD2	22868	genome.wustl.edu	37	2	207639120	207639120	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136193.1	+1	reviewed	p.E476*	0.323	356	0%	187	44.9%	6	0%	-	-	-	HMMPfam_FAST_1
KLF7	8609	genome.wustl.edu	37	2	207988910	207988910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003709.2	-1	provisional	p.E107D	1.000	128	0%	46	52.2%	3	0%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
METTL21A	151194	genome.wustl.edu	37	2	208478129	208478129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127395.1	-1	validated	p.E100*	1.000	63	0%	102	35.3%	29	51.7%	-	-	-	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PIKFYVE	200576	genome.wustl.edu	37	2	209150509	209150509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015040.3	+1	reviewed	p.D225Y	1.000	305	0%	122	43.4%	1	100%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209167033	209167033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015040.3	+1	reviewed	p.D426N	1.000	217	0%	46	34.8%	7	14.2%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	"HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
PIKFYVE	200576	genome.wustl.edu	37	2	209212675	209212675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015040.3	+1	reviewed	p.A1768T	1.000	74	0%	42	54.8%	8	50%	possibly_damaging(0.952)	tolerated(0.31)	neutral(0.423)	superfamily_SAICAR synthase-like
PIKFYVE	200576	genome.wustl.edu	37	2	209218760	209218760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015040.3	+1	reviewed	p.K1995E	1.000	303	0%	152	46.1%	9	44.4%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
MAP2	4133	genome.wustl.edu	37	2	210518033	210518033	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002374.3	+1	reviewed	p.G47*	1.000	95	0%	10	50%	7	14.2%	-	-	-	NULL
MAP2	4133	genome.wustl.edu	37	2	210557748	210557748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002374.3	+1	reviewed	p.S285Y	1.000	44	0%	15	46.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP2	4133	genome.wustl.edu	37	2	210559607	210559607	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002374.3	+1	reviewed	p.R905*	0.920	93	0%	28	42.9%	0	-	-	-	-	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210561397	210561397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002374.3	+1	reviewed	p.I1438L	1.000	58	0%	35	51.4%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_MAP2_projctn
UNC80	285175	genome.wustl.edu	37	2	210693980	210693980	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032504.1	+1	validated	p.Y835D	1.000	173	0%	36	36.1%	0	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	NULL
UNC80	285175	genome.wustl.edu	37	2	210703988	210703988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032504.1	+1	validated	p.F1028L	1.000	60	0%	21	52.4%	0	-	possibly_damaging(0.888)	deleterious(0.03)	deleterious(0.712)	NULL
UNC80	285175	genome.wustl.edu	37	2	210794657	210794657	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032504.1	+1	validated	p.R1891*	1.000	163	0%	69	46.4%	0	-	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210802327	210802327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032504.1	+1	validated	p.E2080D	1.000	214	0%	82	36.6%	0	-	probably_damaging(0.971)	tolerated(0.15)	deleterious(0.654)	NULL
UNC80	285175	genome.wustl.edu	37	2	210836997	210836997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032504.1	+1	validated	p.L2711I	1.000	265	0%	132	45.5%	0	-	probably_damaging(0.971)	tolerated(0.06)	deleterious(0.736)	NULL
RPE	6120	genome.wustl.edu	37	2	210880824	210880824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199229.1	+1	provisional	p.E110D	1.000	158	0%	128	52.3%	21	47.6%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Ribul_P_3_epim,superfamily_Ribulose-phoshate binding barrel
KANSL1L	151050	genome.wustl.edu	37	2	210908737	210908737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152519.2	-1	validated	p.S616L	0.913	157	0.6%	74	37.8%	5	60%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ACADL	33	genome.wustl.edu	37	2	211060041	211060041	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001608.3	-1	reviewed	p.E336*	1.000	201	0%	34	55.9%	1	0%	-	-	-	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
CPS1	1373	genome.wustl.edu	37	2	211438031	211438031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122633.1	+1	reviewed	p.A52T	1.000	281	0%	58	37.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CPSase_sm_chain,superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain
CPS1	1373	genome.wustl.edu	37	2	211441179	211441179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122633.1	+1	reviewed	p.G122R	1.000	291	0%	33	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSase_sm_chain,superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain
CPS1	1373	genome.wustl.edu	37	2	211442229	211442229	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122633.1	+1	reviewed	p.E162*	1.000	270	0%	47	51.1%	0	-	-	-	-	HMMPfam_CPSase_sm_chain,superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain
CPS1	1373	genome.wustl.edu	37	2	211459300	211459300	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122633.1	+1	reviewed	p.P417	0.154	202	0%	25	52%	0	-	-	-	-	NULL
CPS1	1373	genome.wustl.edu	37	2	211469901	211469901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122633.1	+1	reviewed	p.R644*	1.000	154	0%	37	48.6%	0	-	-	-	-	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
ERBB4	2066	genome.wustl.edu	37	2	212285292	212285292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005235.2	-1	reviewed	p.F1003L	1.000	114	0%	36	41.7%	0	-	probably_damaging(0.989)	tolerated(0.22)	deleterious(0.481)	superfamily_Protein kinase-like (PK-like)
ERBB4	2066	genome.wustl.edu	37	2	212483951	212483951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005235.2	-1	reviewed	p.K751T	1.000	163	0%	53	43.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
ERBB4	2066	genome.wustl.edu	37	2	212568834	212568834	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000260943	-1	known	p.S428F	0.031	185	0%	98	33.7%	0	-	-	-	-	HMMPfam_Recep_L_domain,superfamily_L domain-like
ERBB4	2066	genome.wustl.edu	37	2	212812335	212812335	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005235.2	-1	reviewed	p.R81*	1.000	143	0%	47	61.7%	0	-	-	-	-	HMMPfam_Recep_L_domain,superfamily_L domain-like
SPAG16	79582	genome.wustl.edu	37	2	214794725	214794725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024532.3	+1	validated	p.K419R	0.984	202	0%	86	38.4%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
VWC2L	402117	genome.wustl.edu	37	2	215279262	215279262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080500.2	+1	provisional	p.F115L	1.000	56	0%	26	38.5%	0	-	possibly_damaging(0.94)	deleterious(0.03)	deleterious(0.750)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215865517	215865517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173076.2	-1	reviewed	p.A1031S	1.000	211	0%	65	52.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215865605	215865605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173076.2	-1	reviewed	p.K1001N	0.999	242	0%	76	10.5%	0	-	possibly_damaging(0.595)	tolerated(0.25)	neutral(0.243)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215866420	215866420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173076.2	-1	reviewed	p.D909N	0.925	412	0.2%	102	39.2%	0	-	benign(0.003)	tolerated(0.59)	neutral(0.004)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215884364	215884364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173076.2	-1	reviewed	p.E482K	0.027	169	0%	64	53.1%	0	-	benign(0.021)	deleterious(0.03)	neutral(0.365)	NULL
FN1	2335	genome.wustl.edu	37	2	216269199	216269199	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_212482.1	-1	reviewed	p.L1056	0.980	161	0%	37	35.1%	18	16.6%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LOC646324	646324	genome.wustl.edu	37	2	216669487	216669487	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_078267.1	-1	model	NULL	0.542	19	0%	22	50%	0	-	-	-	-	-
LOC646324	646324	genome.wustl.edu	37	2	216669565	216669565	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_078267.1	-1	model	NULL	0.802	19	0%	15	46.7%	0	-	-	-	-	-
XRCC5	7520	genome.wustl.edu	37	2	217026749	217026749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021141.3	+1	reviewed	p.Q604H	1.000	596	0%	207	49.8%	481	43.4%	possibly_damaging(0.93)	deleterious(0.04)	deleterious(0.726)	HMMPfam_Ku_PK_bind,superfamily_Ku_PK_bind
XRCC5	7520	genome.wustl.edu	37	2	217054974	217054974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021141.3	+1	reviewed	p.E621K	0.945	265	0%	144	50%	507	45.5%	benign(0.012)	tolerated(0.8)	neutral(0.001)	HMMPfam_Ku_PK_bind,superfamily_Ku_PK_bind
SMARCAL1	50485	genome.wustl.edu	37	2	217285188	217285188	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127207.1	+1	reviewed	p.F343	0.074	423	0.2%	149	14.8%	11	27.2%	-	-	-	HMMPfam_HARP
IGFBP2	3485	genome.wustl.edu	37	2	217525414	217525414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000597.2	+1	validated	p.E193K	1.000	78	0%	29	51.7%	2178	42.6%	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	NULL
TNS1	7145	genome.wustl.edu	37	2	218699836	218699836	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022648.4	-1	reviewed	p.P961	0.024	100	0%	53	39.6%	17	41.1%	-	-	-	NULL
RUFY4	285180	genome.wustl.edu	37	2	218939979	218939979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198483.3	+1	validated	p.S82I	0.000	115	0%	40	50%	0	-	benign(0.149)	deleterious(0)	neutral(0.458)	NULL
C2orf62	375307	genome.wustl.edu	37	2	219222369	219222369	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198559.1	+1	predicted	p.E77	0.058	26	0%	28	46.4%	0	-	-	-	-	NULL
BCS1L	617	genome.wustl.edu	37	2	219526620	219526620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079866.1	+1	reviewed	p.R200Q	0.998	128	0%	87	37.9%	36	58.3%	benign(0.133)	tolerated(0.29)	neutral(0.040)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC108	255101	genome.wustl.edu	37	2	219868912	219868912	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194302.2	-1	provisional	p.E1773*	0.983	128	0%	250	41.2%	0	-	-	-	-	NULL
CCDC108	255101	genome.wustl.edu	37	2	219905277	219905277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000409865	-1	known	p.S12Y	0.052	17	0%	24	33.3%	0	-	unknown(0)	-	-	NULL
FAM134A	79137	genome.wustl.edu	37	2	220045402	220045402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024293.4	+1	validated	p.R189Q	0.965	580	0%	424	46.9%	48	43.7%	unknown(0)	-	-	NULL
ANKZF1	55139	genome.wustl.edu	37	2	220098516	220098516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042410.1	+1	validated	p.R300H	1.000	43	0%	48	39.6%	23	43.4%	probably_damaging(0.993)	tolerated(0.29)	deleterious(0.479)	NULL
STK16	8576	genome.wustl.edu	37	2	220113471	220113471	+	RNA	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026909.1	+1	validated	NULL	0.000	7	0.000	7	0.571	11	63.6%	-	-	-	-
DES	1674	genome.wustl.edu	37	2	220285334	220285334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001927.3	+1	reviewed	p.A285T	1.000	30	0%	39	43.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Prefoldin,HMMPfam_Filament
SPEG	10290	genome.wustl.edu	37	2	220344742	220344742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005876.4	+1	validated	p.D1741G	1.000	112	0.9%	58	43.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SPEG	10290	genome.wustl.edu	37	2	220353854	220353854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005876.4	+1	validated	p.T2743I	0.886	42	0%	33	48.5%	0	-	benign(0.052)	deleterious(0.01)	neutral(0.409)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SPEG	10290	genome.wustl.edu	37	2	220354242	220354242	+	Silent	SNP	G	G	T	rs148685205	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005876.4	+1	validated	p.S2834	0.028	14	0%	25	32%	0	-	-	-	-	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220506403	220506403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201574.2	+1	validated	p.D1245N	1.000	141	0%	80	43.8%	25	52%	possibly_damaging(0.564)	deleterious(0.01)	deleterious(0.598)	NULL
EPHA4	2043	genome.wustl.edu	37	2	222301800	222301800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004438.3	-1	reviewed	p.S706Y	1.000	100	0%	90	51.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
EPHA4	2043	genome.wustl.edu	37	2	222365881	222365881	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004438.3	-1	reviewed	p.G279*	1.000	131	0%	17	52.9%	0	-	-	-	-	NULL
PAX3	5077	genome.wustl.edu	37	2	223096869	223096869	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181459.2	-1	reviewed	p.R240	0.999	241	0%	44	50%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
MOGAT1	116255	genome.wustl.edu	37	2	223554123	223554123	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_058165.2	+1	validated	p.S138*	0.001	227	0%	185	16.2%	0	-	-	-	-	HMMPfam_DAGAT
ACSL3	2181	genome.wustl.edu	37	2	223793592	223793592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004457.3	+1	reviewed	p.N493T	1.000	352	0%	164	40.2%	61	39.3%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_AMP-binding,superfamily_SSF56801
SCG2	7857	genome.wustl.edu	37	2	224462981	224462981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003469.3	-1	reviewed	p.E340D	0.969	196	0%	74	43.2%	0	-	benign(0.005)	tolerated(0.53)	neutral(0.007)	HMMPfam_Granin
SERPINE2	5270	genome.wustl.edu	37	2	224845062	224845062	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136530.1	-1	validated	p.V358	1.000	161	0%	123	44.7%	379	44.8%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINE2	5270	genome.wustl.edu	37	2	224849536	224849536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136530.1	-1	validated	p.S285G	1.000	240	0%	65	38.5%	369	47.1%	possibly_damaging(0.668)	deleterious(0)	deleterious(0.681)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINE2	5270	genome.wustl.edu	37	2	224863010	224863010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136530.1	-1	validated	p.K115N	1.000	296	0%	138	46.4%	272	47%	possibly_damaging(0.568)	tolerated(0.22)	neutral(0.237)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
FAM124B	79843	genome.wustl.edu	37	2	225244906	225244906	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122779.1	-1	validated	p.L251R	0.000	142	0%	11	54.5%	0	-	possibly_damaging(0.852)	tolerated(0.06)	deleterious(0.650)	NULL
CUL3	8452	genome.wustl.edu	37	2	225360625	225360625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003590.3	-1	validated	p.K589T	1.000	272	0%	130	40.8%	60	26.6%	probably_damaging(0.961)	tolerated(0.16)	neutral(0.464)	HMMPfam_Cullin,superfamily_Cullin homology domain
CUL3	8452	genome.wustl.edu	37	2	225422405	225422405	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003590.3	-1	validated	p.E79*	1.000	232	0%	207	43%	23	34.7%	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
DOCK10	55619	genome.wustl.edu	37	2	225635326	225635326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014689.2	-1	validated	p.L2081I	0.998	397	0%	152	37.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
DOCK10	55619	genome.wustl.edu	37	2	225666693	225666693	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014689.2	-1	validated	p.R1445*	1.000	367	0%	134	45.5%	1	0%	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225750811	225750811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014689.2	-1	validated	p.N194S	1.000	38	0%	23	34.8%	0	-	benign(0.096)	tolerated(0.67)	neutral(0.009)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NYAP2	57624	genome.wustl.edu	37	2	226446750	226446750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020864.1	+1	validated	p.S206Y	1.000	53	0%	19	42.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
IRS1	3667	genome.wustl.edu	37	2	227662766	227662766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005544.2	-1	reviewed	p.V230A	1.000	25	0%	43	41.9%	10	60%	possibly_damaging(0.948)	tolerated(0.18)	neutral(0.447)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
COL4A4	1286	genome.wustl.edu	37	2	227907878	227907878	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000092.4	-1	reviewed	p.E1104	0.007	66	0%	12	41.7%	0	-	-	-	-	HMMPfam_Collagen
COL4A4	1286	genome.wustl.edu	37	2	227953466	227953466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000092.4	-1	reviewed	p.G509E	0.352	61	0%	11	45.5%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228109044	228109044	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000091.3	+1	reviewed	p.P81	1.000	176	0%	152	38.8%	0	-	-	-	-	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228135525	228135525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000091.3	+1	reviewed	p.E539*	0.989	55	0%	29	51.7%	0	-	-	-	-	HMMPfam_Collagen
COL4A3	1285	genome.wustl.edu	37	2	228142203	228142203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000091.3	+1	reviewed	p.L687I	0.986	153	0%	167	47.9%	0	-	unknown(0)	tolerated(0.31)	-	NULL
COL4A3	1285	genome.wustl.edu	37	2	228145223	228145223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000091.3	+1	reviewed	p.S764Y	0.900	56	0%	41	58.5%	0	-	unknown(0)	deleterious(0.04)	-	HMMPfam_Collagen
MFF	56947	genome.wustl.edu	37	2	228207487	228207487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020194.4	+1	provisional	p.R182I	1.000	80	0%	44	36.4%	14	0%	benign(0.278)	deleterious(0)	deleterious(0.475)	HMMPfam_DUF800
SLC19A3	80704	genome.wustl.edu	37	2	228566927	228566927	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025243.3	-1	reviewed	p.I36	0.004	148	0%	140	40%	0	-	-	-	-	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
WDR69	164781	genome.wustl.edu	37	2	228769694	228769694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178821.1	+1	provisional	p.R233I	0.998	505	0%	207	13.5%	0	-	probably_damaging(0.971)	tolerated(0.34)	neutral(0.436)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SPHKAP	80309	genome.wustl.edu	37	2	228883609	228883609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142644.1	-1	validated	p.S654Y	0.756	135	0%	107	57.9%	0	-	benign(0.267)	deleterious(0.03)	neutral(0.393)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230638875	230638875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004238.1	-1	provisional	p.E1803K	1.000	318	0.3%	104	41.3%	98	48.9%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
TRIP12	9320	genome.wustl.edu	37	2	230657829	230657829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004238.1	-1	provisional	p.K1259T	1.000	167	0%	59	35.6%	46	54.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TRIP12	9320	genome.wustl.edu	37	2	230724247	230724247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004238.1	-1	provisional	p.D48N	1.000	204	0%	102	47.1%	15	73.3%	possibly_damaging(0.608)	deleterious(0.01)	deleterious(0.616)	NULL
SP140	11262	genome.wustl.edu	37	2	231118053	231118053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000417495	+1	known	p.P302H	0.000	647	0%	139	18%	0	-	-	-	-	NULL
SP140	11262	genome.wustl.edu	37	2	231159011	231159011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007237.4	+1	validated	p.R665I	0.152	247	0%	145	45.5%	0	-	-	-	-	superfamily_SAND domain-like
SP140	11262	genome.wustl.edu	37	2	231175910	231175910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007237.4	+1	validated	p.E775D	0.999	611	0%	553	34.2%	3	0%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
SP140L	93349	genome.wustl.edu	37	2	231265669	231265669	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138402.4	+1	provisional	e16-1	0.108	241	0%	87	14.9%	1	0%	-	-	-	-
ENSG00000199791	0	genome.wustl.edu	37	2	231451846	231451846	+	RNA	SNP	C	C	T	rs192435111	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000362921	+1	novel	NULL	0.000	20	0%	16	31.2%	0	-	-	-	-	-
ITM2C	81618	genome.wustl.edu	37	2	231741620	231741620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030926.4	+1	validated	p.E167K	0.999	66	0%	53	37.7%	94	31.9%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_BRICHOS
PSMD1	5707	genome.wustl.edu	37	2	231949742	231949742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002807.2	+1	reviewed	p.L578I	1.000	171	0%	113	56.6%	123	46.3%	possibly_damaging(0.675)	tolerated(0.18)	neutral(0.295)	superfamily_ARM repeat
ARMC9	80210	genome.wustl.edu	37	2	232079688	232079688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025139.3	+1	validated	p.L108I	0.930	138	0%	95	48.4%	9	44.4%	possibly_damaging(0.872)	tolerated(0.39)	neutral(0.355)	NULL
NCL	4691	genome.wustl.edu	37	2	232321728	232321728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005381.2	-1	reviewed	p.N519D	1.000	378	0%	376	41.8%	559	48.4%	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ALPP	250	genome.wustl.edu	37	2	233246283	233246283	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001632.3	+1	reviewed	p.F462	0.326	24	0%	12	41.7%	0	-	-	-	-	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
EFHD1	80303	genome.wustl.edu	37	2	233527630	233527630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025202.3	+1	validated	p.D141N	1.000	113	0%	75	52%	110	80.9%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
EFHD1	80303	genome.wustl.edu	37	2	233527635	233527635	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025202.3	+1	validated	p.F142	0.844	119	0%	77	36.4%	125	20%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
EFHD1	80303	genome.wustl.edu	37	2	233527641	233527641	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025202.3	+1	validated	p.G144	1.000	108	0%	71	38%	103	0%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
KCNJ13	3769	genome.wustl.edu	37	2	233635949	233635949	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002242.4	-1	reviewed	p.R42*	0.994	334	0%	72	45.8%	0	-	-	-	-	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
GIGYF2	26058	genome.wustl.edu	37	2	233651941	233651941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103147.1	+1	reviewed	p.R227H	1.000	307	0%	141	41.1%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233656064	233656064	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103147.1	+1	reviewed	p.K418T	1.000	288	0%	64	43.8%	17	41.1%	possibly_damaging(0.633)	tolerated(0.08)	deleterious(0.521)	NULL
ATG16L1	55054	genome.wustl.edu	37	2	234173758	234173758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030803.6	+1	validated	p.R204W	0.998	56	0%	55	49.1%	5	60%	benign(0.016)	deleterious(0.03)	neutral(0.365)	superfamily_WD40 repeat-like,HMMPfam_ATG16
ATG16L1	55054	genome.wustl.edu	37	2	234182405	234182405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030803.6	+1	validated	p.S278Y	1.000	386	0%	355	40.6%	4	50%	unknown(0)	tolerated(0.17)	-	superfamily_WD40 repeat-like
SAG	6295	genome.wustl.edu	37	2	234251022	234251022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000252857	+1	known	p.D197E	0.002	162	0%	232	44%	0	-	-	-	-	NULL
SAG	6295	genome.wustl.edu	37	2	234255515	234255515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000541.4	+1	reviewed	p.E392A	0.004	166	0%	252	46.4%	0	-	benign(0.141)	tolerated(0.17)	neutral(0.071)	NULL
USP40	55230	genome.wustl.edu	37	2	234394437	234394437	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000454354	-1	known	p.S95L	0.892	24	0%	41	36.6%	8	37.5%	-	-	-	NULL
USP40	55230	genome.wustl.edu	37	2	234428301	234428301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018218.2	-1	validated	p.R792Q	1.000	148	0%	87	23%	7	28.5%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
UGT1A9	54600	genome.wustl.edu	37	2	234580718	234580718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021027.2	+1	reviewed	p.E46D	0.993	266	0%	58	56.9%	0	-	benign(0.029)	tolerated(0.54)	neutral(0.009)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A7	54577	genome.wustl.edu	37	2	234591259	234591259	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019077.2	+1	reviewed	p.N226H	0.000	241	0%	110	37.3%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A6	54578	genome.wustl.edu	37	2	234602382	234602382	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001072.3	+1	reviewed	p.I244	0.000	319	0%	154	38.3%	13	46.1%	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A5	54579	genome.wustl.edu	37	2	234621853	234621853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019078.1	+1	reviewed	p.E72D	0.000	140	0%	88	51.1%	0	-	benign(0.004)	tolerated(0.12)	neutral(0.261)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A1	54658	genome.wustl.edu	37	2	234669283	234669283	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000463.2	+1	reviewed	p.K117T	0.000	133	0%	91	42.9%	0	-	benign(0.002)	tolerated(0.59)	neutral(0.004)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
TRPM8	79054	genome.wustl.edu	37	2	234854619	234854619	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024080.4	+1	validated	p.V273	0.002	127	0%	56	44.6%	0	-	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234871962	234871962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024080.4	+1	validated	p.L564I	0.997	196	0%	113	53.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRPM8	79054	genome.wustl.edu	37	2	234878944	234878944	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024080.4	+1	validated	p.V743	1.000	532	0%	272	34.2%	0	-	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234891822	234891822	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024080.4	+1	validated	p.Y905	0.629	169	0%	42	42.9%	0	-	-	-	-	HMMPfam_Ion_trans
TRPM8	79054	genome.wustl.edu	37	2	234915513	234915513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024080.4	+1	validated	p.D1049E	1.000	226	0%	97	13.4%	0	-	probably_damaging(0.955)	tolerated(0.63)	neutral(0.402)	NULL
AGAP1	116987	genome.wustl.edu	37	2	236708131	236708131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037131.1	+1	validated	p.R308C	1.000	128	0%	47	38.3%	27	44.4%	benign(0.309)	tolerated(0.13)	neutral(0.349)	NULL
AGAP1	116987	genome.wustl.edu	37	2	236957752	236957752	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000418654	+1	known	p.L200F	1.000	358	0%	128	37.5%	28	39.2%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
IQCA1	79781	genome.wustl.edu	37	2	237289280	237289280	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000457693	-1	known	e12-1	0.001	1054	0%	391	43.7%	0	-	-	-	-	-
IQCA1	79781	genome.wustl.edu	37	2	237405838	237405838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024726.3	-1	provisional	p.D102N	1.000	110	0%	55	50.9%	7	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COL6A3	1293	genome.wustl.edu	37	2	238242125	238242125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004369.3	-1	reviewed	p.V3099A	1.000	118	0%	90	46.7%	63	0%	unknown(0)	-	-	NULL
COL6A3	1293	genome.wustl.edu	37	2	238280885	238280885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004369.3	-1	reviewed	p.V1259I	1.000	59	0%	21	42.9%	13	0%	benign(0.317)	tolerated(0.15)	neutral(0.340)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
RAB17	64284	genome.wustl.edu	37	2	238483764	238483764	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022449.3	-1	validated	p.E179	0.363	37	0%	17	41.2%	51	54.9%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
LRRFIP1	9208	genome.wustl.edu	37	2	238628209	238628209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137552.1	+1	validated	p.S66L	0.985	135	0%	145	40%	1	0%	benign(0.253)	deleterious(0)	deleterious(0.471)	HMMPfam_DUF2051
LRRFIP1	9208	genome.wustl.edu	37	2	238671280	238671280	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137552.1	+1	validated	p.I308	0.815	43	0%	75	41.3%	61	50.8%	-	-	-	HMMPfam_DUF2051
LRRFIP1	9208	genome.wustl.edu	37	2	238672658	238672658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137552.1	+1	validated	p.S768G	0.000	106	0%	87	44.8%	89	55%	possibly_damaging(0.585)	tolerated(0.11)	deleterious(0.473)	NULL
RBM44	375316	genome.wustl.edu	37	2	238726580	238726580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080504.2	+1	validated	p.D341Y	1.000	16	0%	14	57.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ESPNL	339768	genome.wustl.edu	37	2	239040133	239040133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194312.2	+1	validated	p.F926L	1.000	4	0.000	11	0.545	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
ILKAP	80895	genome.wustl.edu	37	2	239098610	239098610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030768.2	-1	reviewed	p.S61Y	1.000	124	0%	306	43.8%	29	44.8%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
HDAC4	9759	genome.wustl.edu	37	2	239988567	239988567	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000430200	-1	known	p.S37	0.497	19	0%	13	38.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
HDAC4	9759	genome.wustl.edu	37	2	240061430	240061430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006037.3	-1	reviewed	p.V310I	1.000	56	0%	13	53.8%	2	50%	benign(0)	tolerated(1)	-	NULL
ENSG00000196758	0	genome.wustl.edu	37	2	240500133	240500133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000358775	+1	known	p.R5H	0.000	42	0%	36	13.9%	0	-	unknown(0)	-	-	NULL
OR6B3	150681	genome.wustl.edu	37	2	240985367	240985367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173351.1	-1	provisional	p.E41D	0.995	60	0%	25	52%	0	-	probably_damaging(0.998)	tolerated(0.61)	deleterious(0.478)	HMMPfam_7tm_1,superfamily_SSF81321
MYEOV2	150678	genome.wustl.edu	37	2	241069410	241069410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138336.1	-1	validated	p.S100F	0.000	24	0%	12	50%	0	-	unknown(0)	-	-	NULL
MYEOV2	150678	genome.wustl.edu	37	2	241073380	241073380	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138336.1	-1	validated	p.E67*	1.000	84	0%	140	14.3%	244	13.1%	-	-	-	NULL
OTOS	150677	genome.wustl.edu	37	2	241078668	241078668	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148961.3	-1	validated	p.I63	0.928	31	0%	25	36%	0	-	-	-	-	NULL
SNED1	25992	genome.wustl.edu	37	2	241991276	241991276	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080437.1	+1	provisional	p.I617	0.965	11	0%	12	50%	0	-	-	-	-	superfamily_EGF/Laminin
SNED1	25992	genome.wustl.edu	37	2	242008355	242008355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080437.1	+1	provisional	p.I1075T	0.096	23	0%	13	76.9%	2	0%	benign(0.221)	deleterious(0)	neutral(0.467)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ANO7	50636	genome.wustl.edu	37	2	242162640	242162640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001891.3	+1	validated	p.Q841H	0.000	86	0%	83	42.2%	3	66.6%	benign(0.386)	tolerated(0.57)	neutral(0.130)	HMMPfam_DUF590
SEPT2	4735	genome.wustl.edu	37	2	242287551	242287551	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008491.1	+1	validated	p.K310T	1.000	123	0%	249	43.4%	267	43%	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Septin
D2HGDH	728294	genome.wustl.edu	37	2	242683190	242683190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152783.3	+1	reviewed	p.R215Q	0.997	80	0%	47	36.2%	20	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FAD_binding_4,superfamily_FAD-binding domain
CXXC11	285093	genome.wustl.edu	37	2	242812064	242812064	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173821.2	+1	validated	p.S52	0.143	21	0%	12	33.3%	0	-	-	-	-	NULL
CXXC11	285093	genome.wustl.edu	37	2	242814835	242814835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173821.2	+1	validated	p.D376E	0.000	7	0.000	14	0.429	0	-	possibly_damaging(0.666)	tolerated(0.24)	neutral(0.273)	NULL
CNTN6	27255	genome.wustl.edu	37	3	1414624	1414624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014461.2	+1	reviewed	p.D591N	1.000	196	0%	44	47.7%	0	-	possibly_damaging(0.628)	deleterious(0.02)	deleterious(0.602)	superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726
CNTN4	152330	genome.wustl.edu	37	3	2924901	2924901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175607.1	+1	reviewed	p.T242M	0.977	196	0.5%	53	54.7%	2	0%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IL5RA	3568	genome.wustl.edu	37	3	3144448	3144448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000564.3	-1	reviewed	p.L47I	0.949	183	0%	124	43.5%	0	-	possibly_damaging(0.749)	tolerated(0.29)	neutral(0.304)	NULL
LRRN1	57633	genome.wustl.edu	37	3	3887187	3887187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020873.5	+1	validated	p.R288W	0.223	62	0%	45	84.4%	26	100%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	superfamily_SSF52058
ITPR1	3708	genome.wustl.edu	37	3	4716885	4716885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099952.2	+1	reviewed	p.A911V	0.934	201	0%	186	38.7%	1	0%	benign(0.004)	tolerated(0.28)	neutral(0.032)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4726775	4726775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099952.2	+1	reviewed	p.L1187R	1.000	227	0%	103	53.4%	0	-	possibly_damaging(0.857)	deleterious(0)	deleterious(0.776)	HMMPfam_RYDR_ITPR
ITPR1	3708	genome.wustl.edu	37	3	4852970	4852970	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099952.2	+1	reviewed	p.E2384*	1.000	219	0%	163	46.6%	0	-	-	-	-	HMMPfam_Ion_trans
GRM7	2917	genome.wustl.edu	37	3	6903448	6903448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181874.2	+1	reviewed	p.A125T	1.000	52	0%	22	36.4%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_ANF_receptor,superfamily_SSF53822
LMCD1	29995	genome.wustl.edu	37	3	8590416	8590416	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014583.2	+1	reviewed	p.E184*	0.959	124	0%	74	47.3%	15	0%	-	-	-	HMMPfam_PET
RAD18	56852	genome.wustl.edu	37	3	8983271	8983271	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020165.3	-1	reviewed	p.E162*	0.021	264	0%	61	42.6%	7	14.2%	-	-	-	NULL
THUMPD3	25917	genome.wustl.edu	37	3	9413065	9413065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114092.1	+1	validated	p.E218*	0.973	55	0%	73	28.8%	20	15%	-	-	-	NULL
THUMPD3	25917	genome.wustl.edu	37	3	9425999	9425999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114092.1	+1	validated	p.D447N	1.000	62	0%	64	50%	37	10.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UPF0020,superfamily_SSF53335
LHFPL4	375323	genome.wustl.edu	37	3	9594190	9594190	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198560.2	-1	reviewed	p.Y58*	1.000	20	0%	32	34.4%	0	-	-	-	-	HMMPfam_L_HGMIC_fpl
OGG1	4968	genome.wustl.edu	37	3	9807518	9807518	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000352937	+1	known	p.W163*	1.000	193	0%	58	51.7%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HhH-GPD,HMMSmart_SM00478
OGG1	4968	genome.wustl.edu	37	3	9807654	9807654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016821.2	+1	reviewed	p.F370L	0.000	97	1%	29	37.9%	12	58.3%	unknown(0)	-	-	NULL
IL17RE	132014	genome.wustl.edu	37	3	9949924	9949924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153480.1	+1	reviewed	p.K223T	0.813	115	0%	83	42.2%	1	100%	possibly_damaging(0.697)	deleterious(0.01)	deleterious(0.655)	NULL
IL17RE	132014	genome.wustl.edu	37	3	9953152	9953152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153480.1	+1	reviewed	p.S366R	0.955	102	0%	94	37.2%	8	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
IL17RE	132014	genome.wustl.edu	37	3	9956446	9956446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153480.1	+1	reviewed	p.R478W	0.008	83	0%	61	45.9%	8	62.5%	benign(0.047)	deleterious(0.01)	neutral(0.409)	NULL
IL17RC	84818	genome.wustl.edu	37	3	9970273	9970273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153461.2	+1	reviewed	p.E428K	0.032	65	0%	70	51.4%	15	6.6%	benign(0.009)	tolerated(0.26)	neutral(0.035)	NULL
C3orf24	115795	genome.wustl.edu	37	3	10145989	10145989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173472.1	-1	validated	p.R157H	1.000	88	0%	104	44.2%	0	-	possibly_damaging(0.664)	deleterious(0)	deleterious(0.679)	NULL
BRK1	55845	genome.wustl.edu	37	3	10167347	10167347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018462.4	+1	validated	p.E52D	1.000	152	0%	146	43.8%	348	37.6%	possibly_damaging(0.904)	tolerated(0.16)	neutral(0.418)	NULL
ATP2B2	491	genome.wustl.edu	37	3	10387188	10387188	+	Silent	SNP	G	G	A	rs111706887	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001331.2	-1	reviewed	p.I861	0.917	377	0%	92	35.9%	0	-	-	-	-	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
SLC6A11	6538	genome.wustl.edu	37	3	10953819	10953819	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014229.1	+1	provisional	p.I312M	1.000	223	0%	104	45.2%	0	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_SNF
SLC6A1	6529	genome.wustl.edu	37	3	11078641	11078641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003042.3	+1	validated	p.A597P	1.000	121	0%	12	41.7%	0	-	benign(0.06)	deleterious(0.02)	neutral(0.387)	NULL
SYN2	6854	genome.wustl.edu	37	3	12211381	12211381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000341648	+1	known	p.R359I	1.000	180	0%	17	29.4%	0	-	possibly_damaging(0.926)	deleterious(0.05)	deleterious(0.720)	NULL
TMEM40	55287	genome.wustl.edu	37	3	12778139	12778139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018306.2	-1	provisional	p.S186Y	1.000	52	0%	36	55.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NUP210	23225	genome.wustl.edu	37	3	13363180	13363180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024923.2	-1	reviewed	p.L1691I	0.998	75	0%	51	47.1%	88	54.5%	benign(0.041)	tolerated(0.29)	neutral(0.032)	NULL
C3orf19	51244	genome.wustl.edu	37	3	14695972	14695972	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016474.4	+1	validated	p.E28*	1.000	39	0%	87	43.7%	18	72.2%	-	-	-	NULL
FGD5	152273	genome.wustl.edu	37	3	14922087	14922087	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152536.3	+1	validated	p.G889	1.000	209	0%	77	49.4%	8	25%	-	-	-	superfamily_DBL homology domain (DH-domain)
FGD5	152273	genome.wustl.edu	37	3	14922119	14922119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152536.3	+1	validated	p.L900R	1.000	237	0%	89	40.4%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ENSG00000221424	0	genome.wustl.edu	37	3	15175955	15175955	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000408497	-1	novel	NULL	0.055	143	0%	129	44.2%	0	-	-	-	-	-
METTL6	131965	genome.wustl.edu	37	3	15467823	15467823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152396.2	-1	validated	p.E66K	1.000	326	0%	222	43.7%	23	43.4%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
HACL1	26061	genome.wustl.edu	37	3	15628080	15628080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012260.2	-1	validated	p.F137L	1.000	94	0%	80	47.5%	9	44.4%	benign(0.199)	tolerated(0.48)	neutral(0.029)	HMMPfam_TPP_enzyme_N,superfamily_SSF52518
ANKRD28	23243	genome.wustl.edu	37	3	15753656	15753656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015199.2	-1	provisional	p.L392I	1.000	53	0%	32	12.5%	7	0%	possibly_damaging(0.868)	tolerated(0.08)	deleterious(0.637)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GALNTL2	117248	genome.wustl.edu	37	3	16216768	16216768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054110.4	+1	validated	p.H37R	0.002	112	0%	44	34.1%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
GALNTL2	117248	genome.wustl.edu	37	3	16252734	16252734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054110.4	+1	validated	p.E395K	1.000	176	0%	57	52.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53448
RFTN1	23180	genome.wustl.edu	37	3	16358730	16358730	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015150.1	-1	validated	p.R448*	1.000	139	0%	136	47.1%	6	0%	-	-	-	NULL
DAZL	1618	genome.wustl.edu	37	3	16638329	16638329	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001351.2	-1	reviewed	p.V142	0.992	334	0%	199	34.2%	0	-	-	-	-	NULL
PLCL2	23228	genome.wustl.edu	37	3	17051788	17051788	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015184.5	+1	validated	p.K191T	1.000	32	0%	19	47.4%	2	50%	benign(0.338)	tolerated(0.41)	neutral(0.121)	superfamily_SSF47473
KAT2B	8850	genome.wustl.edu	37	3	20142827	20142827	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003884.4	+1	reviewed	p.E240*	1.000	247	0%	47	34%	8	12.5%	-	-	-	HMMPfam_PCAF_N
KAT2B	8850	genome.wustl.edu	37	3	20164214	20164214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003884.4	+1	reviewed	p.R444Q	1.000	180	0%	65	49.2%	9	66.6%	probably_damaging(0.986)	tolerated(0.09)	deleterious(0.731)	NULL
NR1D2	9975	genome.wustl.edu	37	3	23996191	23996191	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005126.4	+1	reviewed	p.L60	0.956	139	0%	158	49.4%	6	33.3%	-	-	-	NULL
NR1D2	9975	genome.wustl.edu	37	3	23997605	23997605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005126.4	+1	reviewed	p.E121K	1.000	331	0%	343	44.9%	25	44%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_SSF57716
RARB	5915	genome.wustl.edu	37	3	25611346	25611346	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000965.3	+1	reviewed	p.E182	1.000	103	0%	97	46.4%	11	18.1%	-	-	-	superfamily_Str_ncl_receptor
RARB	5915	genome.wustl.edu	37	3	25635012	25635012	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000965.3	+1	reviewed	p.R269	1.000	250	0%	65	49.2%	6	16.6%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
NGLY1	55768	genome.wustl.edu	37	3	25760964	25760964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018297.3	-1	reviewed	p.F651C	1.000	358	0%	148	50%	53	66%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
LRRC3B	116135	genome.wustl.edu	37	3	26751872	26751872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052953.2	+1	provisional	p.E237K	1.000	146	0.7%	26	50%	1	100%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
NEK10	152110	genome.wustl.edu	37	3	27363681	27363681	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199347.2	-1	validated	p.D145A	1.000	150	0%	69	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
SLC4A7	9497	genome.wustl.edu	37	3	27477888	27477888	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003615.3	-1	validated	p.E185*	1.000	113	0%	65	47.7%	6	16.6%	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
EOMES	8320	genome.wustl.edu	37	3	27758988	27758988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005442.2	-1	reviewed	p.L545W	1.000	119	0%	143	54.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RBMS3	27303	genome.wustl.edu	37	3	30032685	30032685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003793.2	+1	reviewed	p.S431Y	1.000	283	0%	104	53.8%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
TGFBR2	7048	genome.wustl.edu	37	3	30691875	30691875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024847.2	+1	reviewed	p.K151T	0.950	166	0%	60	43.3%	4	75%	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like
OSBPL10	114884	genome.wustl.edu	37	3	31871543	31871543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017784.4	-1	reviewed	p.E240K	1.000	79	0%	34	50%	34	38.2%	possibly_damaging(0.692)	deleterious(0.01)	deleterious(0.653)	NULL
CLASP2	23122	genome.wustl.edu	37	3	33648233	33648233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015097.1	-1	validated	p.R515I	1.000	215	0%	102	43.1%	11	45.4%	possibly_damaging(0.446)	deleterious(0.02)	deleterious(0.529)	superfamily_ARM repeat
PDCD6IP	10015	genome.wustl.edu	37	3	33870431	33870431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013374.4	+1	validated	p.K268N	1.000	337	0%	88	46.6%	34	41.1%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_BRO1
PDCD6IP	10015	genome.wustl.edu	37	3	33907893	33907893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013374.4	+1	validated	p.Q828P	1.000	115	0%	50	56%	55	54.5%	unknown(0)	tolerated(0.08)	-	NULL
ARPP21	10777	genome.wustl.edu	37	3	35750500	35750500	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016300.4	+1	validated	p.K279Q	1.000	334	0%	128	39.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000172995	0	genome.wustl.edu	37	3	35770874	35770874	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000425289	+1	known	p.L208I	0.998	92	0%	15	46.7%	0	-	-	-	-	NULL
MIR128-2	406916	genome.wustl.edu	37	3	35785989	35785989	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384893	+1	known	NULL	1.000	40	0%	19	57.9%	0	-	-	-	-	-
STAC	6769	genome.wustl.edu	37	3	36534709	36534709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003149.1	+1	provisional	p.R252C	0.977	168	0%	74	10.8%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36905972	36905972	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000513141	-1	known	NULL	0.993	142	0%	70	48.6%	0	-	-	-	-	-
TRANK1	9881	genome.wustl.edu	37	3	36934402	36934402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000429976	-1	known	p.S158N	1.000	93	0%	70	45.7%	0	-	benign(0.009)	tolerated(0.08)	neutral(0.300)	NULL
EPM2AIP1	9852	genome.wustl.edu	37	3	37033500	37033500	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014805.3	-1	reviewed	p.E357*	0.996	57	0%	96	42.7%	8	25%	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37363233	37363233	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002078.4	+1	reviewed	p.Q519	0.732	103	0%	114	32.5%	12	41.6%	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37367050	37367050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002078.4	+1	reviewed	p.E1225K	0.992	91	0%	46	56.5%	22	68.1%	benign(0.052)	tolerated(0.32)	neutral(0.027)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37368329	37368329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002078.4	+1	reviewed	p.I1651T	1.000	86	0%	61	36.1%	45	46.6%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37370562	37370562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002078.4	+1	reviewed	p.K2057T	0.973	262	0%	117	41%	71	54.9%	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37388747	37388747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002078.4	+1	reviewed	p.R2179Q	1.000	216	0%	139	46%	67	47.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GRIP,HMMSmart_SM00755,superfamily_GRIP domain
PLCD1	5333	genome.wustl.edu	37	3	38050579	38050579	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130964.1	-1	validated	p.S580	0.979	150	0%	63	44.4%	6	50%	-	-	-	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
PLCD1	5333	genome.wustl.edu	37	3	38058104	38058104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130964.1	-1	validated	p.K123N	1.000	318	0%	83	38.6%	2	0%	possibly_damaging(0.592)	tolerated(0.18)	neutral(0.261)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
DLEC1	9940	genome.wustl.edu	37	3	38153182	38153182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007337.2	+1	reviewed	p.P1153L	0.895	55	0%	36	44.4%	0	-	possibly_damaging(0.812)	tolerated(0.28)	neutral(0.337)	NULL
SLC22A13	9390	genome.wustl.edu	37	3	38316603	38316603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004256.3	+1	reviewed	p.Q254R	0.998	62	0%	23	34.8%	0	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
XYLB	9942	genome.wustl.edu	37	3	38437009	38437009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005108.3	+1	reviewed	p.K435N	1.000	140	0%	134	47.8%	8	75%	benign(0.268)	deleterious(0.04)	neutral(0.378)	HMMPfam_FGGY_C,superfamily_SSF53067
EXOG	9941	genome.wustl.edu	37	3	38565430	38565430	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005107.3	+1	reviewed	p.L228	0.020	70	0%	37	48.6%	7	28.5%	-	-	-	HMMPfam_Endonuclease_NS,HMMSmart_SM00477,superfamily_His-Me finger endonucleases
SCN5A	6331	genome.wustl.edu	37	3	38640473	38640473	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099404.1	-1	reviewed	p.F653	0.942	40	0%	19	52.6%	0	-	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38739271	38739271	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006514.2	-1	validated	p.E1814*	1.000	164	0%	74	43.2%	0	-	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38739484	38739484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006514.2	-1	validated	p.M1743V	1.000	250	0%	77	39%	0	-	benign(0.366)	deleterious(0)	deleterious(0.561)	superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38751008	38751008	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006514.2	-1	validated	p.V1414	1.000	123	0%	103	41.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN10A	6336	genome.wustl.edu	37	3	38784001	38784001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006514.2	-1	validated	p.Q629H	1.000	235	0%	42	40.5%	0	-	possibly_damaging(0.682)	tolerated(0.11)	deleterious(0.514)	NULL
SCN10A	6336	genome.wustl.edu	37	3	38798207	38798207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006514.2	-1	validated	p.K416N	0.718	200	0%	101	56.4%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
SCN11A	11280	genome.wustl.edu	37	3	38888956	38888956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014139.2	-1	validated	p.K1535N	0.001	143	0%	42	35.7%	0	-	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
WDR48	57599	genome.wustl.edu	37	3	39118648	39118648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020839.2	+1	provisional	p.A306S	1.000	125	0%	123	43.1%	13	46.1%	benign(0.008)	tolerated(0.71)	neutral(0.002)	superfamily_WD40 repeat-like
ZNF619	285267	genome.wustl.edu	37	3	40528615	40528615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145082.2	+1	validated	p.K245T	0.994	85	0%	41	39%	9	44.4%	benign(0.146)	tolerated(0.07)	neutral(0.332)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098209.1	+1	reviewed	p.S37F	1.000	81	0%	36	44.4%	169	40.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41275762	41275762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098209.1	+1	reviewed	p.M553V	1.000	417	0%	70	51.4%	212	46.6%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMSmart_SM00185,superfamily_ARM repeat
ULK4	54986	genome.wustl.edu	37	3	41607533	41607533	+	Missense_Mutation	SNP	T	T	C	rs191981192	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017886.2	-1	validated	p.E1070G	1.000	245	0%	96	40.6%	2	0%	benign(0.121)	tolerated(0.14)	neutral(0.259)	superfamily_ARM-type_fold
ULK4	54986	genome.wustl.edu	37	3	41954312	41954312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017886.2	-1	validated	p.D295Y	0.066	113	0%	80	46.3%	2	100%	benign(0.35)	deleterious(0.01)	deleterious(0.517)	superfamily_Kinase_like,superfamily_ARM-type_fold
ULK4	54986	genome.wustl.edu	37	3	41977373	41977373	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017886.2	-1	validated	p.E100*	1.000	270	0%	150	20%	5	20%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
TRAK1	22906	genome.wustl.edu	37	3	42132982	42132982	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042646.1	+1	validated	p.F7	0.000	374	0.3%	113	45.1%	0	-	-	-	-	NULL
TRAK1	22906	genome.wustl.edu	37	3	42230561	42230561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042646.1	+1	validated	p.S212Y	1.000	198	0%	90	50%	13	30.7%	probably_damaging(0.96)	tolerated(0.64)	neutral(0.406)	HMMPfam_HAP1_N
TRAK1	22906	genome.wustl.edu	37	3	42244373	42244373	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000449246	+1	known	p.C551R	1.000	5	0.000	11	0.455	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
NKTR	4820	genome.wustl.edu	37	3	42679162	42679162	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005385.3	+1	reviewed	p.E657fs	0.957	-	-	-	-	-	-	-	-	-	NULL
ZBTB47	92999	genome.wustl.edu	37	3	42700438	42700438	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000232974	+1	known	p.V197	0.000	8	0.000	12	0.417	8	37.5%	-	-	-	NULL
ZNF662	389114	genome.wustl.edu	37	3	42955835	42955835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134656.1	+1	validated	p.R116S	0.547	36	0%	54	46.3%	5	0%	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
ZNF662	389114	genome.wustl.edu	37	3	42956368	42956368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134656.1	+1	validated	p.R294K	1.000	99	0%	74	54.1%	3	0%	possibly_damaging(0.882)	deleterious(0.03)	deleterious(0.709)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C3orf77	375337	genome.wustl.edu	37	3	44283855	44283855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145030.1	+1	validated	p.K104Q	0.050	42	0%	18	44.4%	0	-	probably_damaging(0.975)	tolerated(0.05)	deleterious(0.762)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44284457	44284457	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145030.1	+1	validated	p.C153*	0.982	46	0%	71	46.5%	0	-	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44285341	44285341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145030.1	+1	validated	p.S448L	0.000	53	0%	67	43.3%	0	-	probably_damaging(0.957)	tolerated(0.17)	neutral(0.460)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44364613	44364613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145030.1	+1	validated	p.L1501I	0.996	50	0%	58	36.2%	0	-	probably_damaging(0.971)	tolerated(0.08)	deleterious(0.713)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44369798	44369798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145030.1	+1	validated	p.L1578I	1.000	94	0%	98	35.7%	0	-	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	NULL
C3orf23	285343	genome.wustl.edu	37	3	44434423	44434423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173826.3	+1	validated	p.R217C	1.000	100	0%	100	45%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF197	10168	genome.wustl.edu	37	3	44683588	44683588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006991.3	+1	reviewed	p.K322N	0.000	51	0%	43	46.5%	15	66.6%	probably_damaging(0.999)	tolerated(0.32)	deleterious(0.514)	NULL
ZNF197	10168	genome.wustl.edu	37	3	44685219	44685219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006991.3	+1	reviewed	p.R866I	0.982	54	0%	71	46.5%	4	75%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF501	115560	genome.wustl.edu	37	3	44776206	44776206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145044.2	+1	validated	p.R98I	1.000	154	0%	138	45.7%	6	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KIAA1143	57456	genome.wustl.edu	37	3	44794861	44794861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020696.3	-1	validated	p.S146Y	1.000	132	0%	126	13.5%	37	2.7%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
EXOSC7	23016	genome.wustl.edu	37	3	45038599	45038599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015004.3	+1	validated	p.E92A	1.000	337	0%	178	47.2%	84	39.2%	benign(0.015)	tolerated(0.52)	neutral(0.009)	HMMPfam_RNase_PH,superfamily_Ribosomal protein S5 domain 2-like
CDCP1	64866	genome.wustl.edu	37	3	45136977	45136977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022842.3	-1	reviewed	p.F370L	0.766	478	0%	117	40.2%	35	40%	possibly_damaging(0.808)	tolerated(0.33)	neutral(0.328)	NULL
LARS2	23395	genome.wustl.edu	37	3	45557711	45557711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015340.3	+1	reviewed	p.R663W	0.998	185	0%	126	49.2%	30	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1g,superfamily_SSF52374
FYCO1	79443	genome.wustl.edu	37	3	45963310	45963310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024513.2	-1	validated	p.Y1462H	1.000	118	0%	90	52.2%	7	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Supernatant protein factor (SPF) C-terminal domain
CCR5	1234	genome.wustl.edu	37	3	46414934	46414934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000579.3	+1	reviewed	p.H181N	0.003	68	1.5%	56	46.4%	3	0%	benign(0.023)	deleterious(0.01)	neutral(0.407)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCR5	1234	genome.wustl.edu	37	3	46415439	46415439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000579.3	+1	reviewed	p.S349F	0.879	33	0%	34	64.7%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CCRL2	9034	genome.wustl.edu	37	3	46449903	46449903	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130910.1	+1	reviewed	p.F123	0.000	199	0.5%	84	39.3%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PTH1R	5745	genome.wustl.edu	37	3	46935457	46935457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000316.2	+1	reviewed	p.A46T	1.000	51	0%	19	36.8%	0	-	benign(0.097)	tolerated(0.23)	neutral(0.049)	NULL
CCDC12	151903	genome.wustl.edu	37	3	46963573	46963573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144716.3	-1	validated	p.E159K	0.083	88	0%	80	36.2%	126	47.6%	benign(0)	tolerated(0.78)	neutral(0.001)	HMMPfam_cwf18
SETD2	29072	genome.wustl.edu	37	3	47125251	47125251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014159.6	-1	reviewed	p.D2007Y	1.000	476	0%	158	44.3%	62	53.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SETD2	29072	genome.wustl.edu	37	3	47164211	47164211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014159.6	-1	reviewed	p.E639K	1.000	52	0%	57	40.4%	4	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KIF9	64147	genome.wustl.edu	37	3	47312902	47312902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134878.1	-1	validated	p.V139A	0.851	75	0%	49	44.9%	1	100%	benign(0.184)	tolerated(0.17)	neutral(0.076)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPN23	25930	genome.wustl.edu	37	3	47448830	47448830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015466.2	+1	validated	p.R299H	1.000	29	0%	48	33.3%	35	45.7%	probably_damaging(0.957)	tolerated(0.09)	deleterious(0.697)	HMMPfam_BRO1
ENSG00000250823	0	genome.wustl.edu	37	3	47456185	47456185	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000504649	+1	known	NULL	0.001	12	0%	34	41.2%	1	100%	-	-	-	-
SCAP	22937	genome.wustl.edu	37	3	47484457	47484457	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012235.2	-1	reviewed	p.E9	1.000	416	0%	110	51.8%	24	70.8%	-	-	-	NULL
DHX30	22907	genome.wustl.edu	37	3	47888784	47888784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138615.2	+1	reviewed	p.D651N	0.989	129	0%	58	51.7%	100	53%	possibly_damaging(0.837)	tolerated(0.29)	neutral(0.349)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX30	22907	genome.wustl.edu	37	3	47889786	47889786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138615.2	+1	reviewed	p.E801D	0.998	47	0%	34	44.1%	123	36.5%	benign(0)	tolerated(0.64)	neutral(0.003)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP4	4134	genome.wustl.edu	37	3	47951683	47951683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030884.3	-1	reviewed	p.E17K	0.987	120	0%	62	37.1%	3	0%	possibly_damaging(0.847)	tolerated(0.11)	deleterious(0.597)	NULL
MAP4	4134	genome.wustl.edu	37	3	47951787	47951787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000426837	-1	known	p.S1392Y	0.812	72	0%	36	38.9%	0	-	benign(0.021)	tolerated(0.84)	neutral(0.002)	NULL
ZNF589	51385	genome.wustl.edu	37	3	48289152	48289152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016089.2	+1	validated	p.E27D	0.661	255	0%	132	42.4%	12	66.6%	benign(0.091)	tolerated(0.39)	neutral(0.022)	NULL
PLXNB1	5364	genome.wustl.edu	37	3	48463104	48463104	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130082.1	-1	validated	p.I544	1.000	71	0%	31	54.8%	40	50%	-	-	-	NULL
ATRIP	84126	genome.wustl.edu	37	3	48491531	48491531	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130384.1	+1	reviewed	p.F112	0.959	23	0%	132	41.7%	3	0%	-	-	-	NULL
MIR711	100313843	genome.wustl.edu	37	3	48616397	48616397	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390201	-1	known	NULL	0.248	39	0%	35	54.3%	0	-	-	-	-	-
ENSG00000232483	0	genome.wustl.edu	37	3	48731815	48731815	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000421921	+1	novel	NULL	0.008	49	0%	119	39.5%	17	41.1%	-	-	-	-
ARIH2	10425	genome.wustl.edu	37	3	49011195	49011195	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006321.2	+1	provisional	p.T278	0.942	58	0%	129	51.9%	60	51.6%	-	-	-	HMMSmart_SM00647
WDR6	11180	genome.wustl.edu	37	3	49049293	49049293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018031.3	+1	reviewed	p.R139H	1.000	112	0%	99	42.4%	75	42.6%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
IMPDH2	3615	genome.wustl.edu	37	3	49062587	49062587	+	Silent	SNP	C	C	T	rs183457824	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000429182	-1	known	p.E330K	1.000	50	0%	60	46.7%	265	55.8%	-	-	-	HMMPfam_IMPDH,superfamily_Inosine monophosphate dehydrogenase (IMPDH)
USP19	10869	genome.wustl.edu	37	3	49151693	49151693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006677.1	-1	provisional	p.L670I	1.000	53	0%	59	32.2%	30	43.3%	possibly_damaging(0.93)	deleterious(0.03)	deleterious(0.741)	HMMPfam_UCH,superfamily_Cysteine proteinases
LAMB2	3913	genome.wustl.edu	37	3	49161025	49161025	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002292.3	-1	reviewed	p.L1279	0.997	31	0%	38	39.5%	136	38.2%	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49169086	49169086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002292.3	-1	reviewed	p.Y177C	1.000	29	0%	32	34.4%	34	38.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_N,HMMSmart_LamNT
CCDC36	339834	genome.wustl.edu	37	3	49274102	49274102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135197.1	+1	validated	p.D60N	1.000	139	0%	118	46.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCDC36	339834	genome.wustl.edu	37	3	49281843	49281843	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135197.1	+1	validated	p.T134	0.805	39	0%	124	41.9%	0	-	-	-	-	NULL
CCDC36	339834	genome.wustl.edu	37	3	49282172	49282172	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000366429	+1	known	p.S163	0.981	76	0%	101	44.6%	0	-	-	-	-	NULL
CCDC36	339834	genome.wustl.edu	37	3	49293752	49293752	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135197.1	+1	validated	p.S274	0.032	68	0%	43	48.8%	0	-	-	-	-	NULL
USP4	7375	genome.wustl.edu	37	3	49337952	49337952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003363.3	-1	validated	p.R487Q	1.000	239	0%	125	46.4%	28	42.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP4	7375	genome.wustl.edu	37	3	49348061	49348061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003363.3	-1	validated	p.A316T	1.000	283	0%	211	49.3%	18	44.4%	possibly_damaging(0.694)	tolerated(0.06)	deleterious(0.572)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases
NICN1	84276	genome.wustl.edu	37	3	49463841	49463841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032316.3	-1	reviewed	p.K51N	1.000	38	0%	32	43.8%	6	66.6%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
BSN	8927	genome.wustl.edu	37	3	49694069	49694069	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003458.3	+1	reviewed	p.S2360	0.000	15	0%	20	30%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49698052	49698052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003458.3	+1	reviewed	p.R2925Q	1.000	12	0%	10	50%	0	-	unknown(0)	-	-	NULL
MST1	4485	genome.wustl.edu	37	3	49725221	49725221	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020998.3	-1	reviewed	p.E68D	1.000	48	0%	52	38.5%	3	66.6%	benign(0.22)	tolerated(0.34)	neutral(0.044)	HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Hairpin loop containing domain-like
RNF123	63891	genome.wustl.edu	37	3	49749944	49749944	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022064.2	+1	reviewed	p.R843	0.062	61	0%	48	50%	22	27.2%	-	-	-	NULL
IP6K1	9807	genome.wustl.edu	37	3	49770298	49770298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153273.3	-1	reviewed	p.N181S	1.000	37	0%	23	26.1%	29	37.9%	possibly_damaging(0.794)	tolerated(0.06)	deleterious(0.621)	HMMPfam_IPK,superfamily_SAICAR synthase-like
RBM5	10181	genome.wustl.edu	37	3	50151655	50151655	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005778.1	+1	provisional	p.R604*	1.000	26	0%	67	50.7%	52	25%	-	-	-	NULL
SLC38A3	10991	genome.wustl.edu	37	3	50252087	50252087	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006841.4	+1	validated	p.F62	0.533	45	0%	30	43.3%	0	-	-	-	-	NULL
GNAI2	2771	genome.wustl.edu	37	3	50294255	50294255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002070.2	+1	reviewed	p.D232Y	1.000	118	0%	146	40.4%	312	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
SEMA3B	7869	genome.wustl.edu	37	3	50308851	50308851	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004636.2	+1	reviewed	p.F201	1.000	62	0%	51	43.1%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CACNA2D2	9254	genome.wustl.edu	37	3	50417204	50417204	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005505.1	-1	reviewed	p.C315	0.833	47	0%	54	44.4%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
DOCK3	1795	genome.wustl.edu	37	3	51196713	51196713	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004947.3	+1	validated	p.I289	1.000	172	0%	128	43%	0	-	-	-	-	NULL
DOCK3	1795	genome.wustl.edu	37	3	51198011	51198011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004947.3	+1	validated	p.K305N	1.000	131	0%	72	44.4%	0	-	benign(0.324)	tolerated(0.42)	neutral(0.116)	NULL
DOCK3	1795	genome.wustl.edu	37	3	51251622	51251622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004947.3	+1	validated	p.F399C	1.000	212	0%	100	42%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RBM15B	29890	genome.wustl.edu	37	3	51430341	51430341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013286.3	+1	validated	p.S504L	0.124	17	0%	27	40.7%	122	40.1%	benign(0.006)	tolerated(0.43)	neutral(0.013)	superfamily_SSF54928
ENSG00000250864	0	genome.wustl.edu	37	3	51431559	51431559	+	RNA	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000506856	-1	novel	NULL	0.803	12	0%	21	28.6%	116	43.9%	-	-	-	-
VPRBP	9730	genome.wustl.edu	37	3	51457860	51457860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014703.2	-1	validated	p.R802Q	1.000	327	0%	99	44.4%	14	50%	probably_damaging(0.976)	tolerated(0.14)	deleterious(0.667)	HMMSmart_SM00667,HMMPfam_LisH
RAD54L2	23132	genome.wustl.edu	37	3	51664398	51664398	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015106.2	+1	validated	p.R198*	1.000	169	0%	84	53.6%	2	50%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD54L2	23132	genome.wustl.edu	37	3	51679177	51679177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015106.2	+1	validated	p.R863H	1.000	306	0%	93	37.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD54L2	23132	genome.wustl.edu	37	3	51696607	51696607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015106.2	+1	validated	p.R1192H	0.017	24	0%	22	40.9%	4	0%	benign(0.004)	tolerated(0.33)	neutral(0.024)	NULL
IQCF1	132141	genome.wustl.edu	37	3	51928930	51928930	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152397.2	-1	validated	p.C198	1.000	86	0%	26	46.2%	0	-	-	-	-	NULL
RRP9	9136	genome.wustl.edu	37	3	51972149	51972149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004704.3	-1	provisional	p.R81H	1.000	88	0%	47	59.6%	60	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POC1A	25886	genome.wustl.edu	37	3	52109995	52109995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015426.4	-1	validated	p.S378A	1.000	50	0%	50	40%	42	42.8%	benign(0.041)	tolerated(0.21)	neutral(0.046)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52431865	52431865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015512.4	+1	validated	p.S3977Y	0.505	70	0%	68	23.5%	1	0%	possibly_damaging(0.609)	deleterious(0.01)	deleterious(0.617)	HMMPfam_Dynein_heavy
STAB1	23166	genome.wustl.edu	37	3	52535213	52535213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015136.2	+1	reviewed	p.T37M	0.161	24	0%	37	43.2%	0	-	benign(0.041)	tolerated(0.27)	neutral(0.036)	NULL
NEK4	6787	genome.wustl.edu	37	3	52745802	52745802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003157.3	-1	validated	p.M839I	1.000	95	0%	187	47.6%	18	50%	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
ITIH1	3697	genome.wustl.edu	37	3	52815985	52815985	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002215.2	+1	reviewed	p.S239	0.181	127	0%	48	58.3%	0	-	-	-	-	NULL
ITIH1	3697	genome.wustl.edu	37	3	52823743	52823743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002215.2	+1	reviewed	p.R732W	0.448	54	0%	62	41.9%	0	-	benign(0.155)	deleterious(0)	neutral(0.458)	HMMPfam_ITI_HC_C
PRKCD	5580	genome.wustl.edu	37	3	53212542	53212542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006254.3	+1	reviewed	p.A35V	0.996	24	0.000	7	0.571	19	47.3%	possibly_damaging(0.69)	tolerated(0.1)	deleterious(0.533)	HMMSmart_C2,superfamily_C2_CaLB
CACNA1D	776	genome.wustl.edu	37	3	53736669	53736669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000720.2	+1	validated	p.E408*	1.000	84	0%	94	50%	0	-	-	-	-	superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53756373	53756373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000720.2	+1	validated	p.R533H	1.000	185	0%	94	44.7%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53783458	53783458	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000720.2	+1	validated	p.E1180*	1.000	213	0%	230	44.8%	0	-	-	-	-	superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53820926	53820926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000720.2	+1	validated	p.E1644*	1.000	114	0%	115	41.7%	0	-	-	-	-	HMMPfam_Ca_chan_IQ
CHDH	55349	genome.wustl.edu	37	3	53851900	53851900	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018397.3	-1	validated	p.I563	0.044	72	0%	62	37.1%	2	0%	-	-	-	HMMPfam_GMC_oxred_C,superfamily_SSF51905
CHDH	55349	genome.wustl.edu	37	3	53852036	53852036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018397.3	-1	validated	p.M518T	1.000	70	0%	48	10.4%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GMC_oxred_C,superfamily_SSF51905
IL17RB	55540	genome.wustl.edu	37	3	53890993	53890993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018725.3	+1	reviewed	p.G218R	0.172	306	0%	314	45.2%	3	0%	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54537561	54537561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018398.2	+1	reviewed	p.D142Y	1.000	217	0%	100	17%	1	0%	benign(0.394)	deleterious(0.02)	deleterious(0.510)	HMMPfam_VWA_N
CACNA2D3	55799	genome.wustl.edu	37	3	54933881	54933881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018398.2	+1	reviewed	p.S812Y	1.000	204	0.5%	103	48.5%	0	-	possibly_damaging(0.594)	deleterious(0.01)	deleterious(0.611)	NULL
CCDC66	285331	genome.wustl.edu	37	3	56598150	56598150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001141947.1	+1	validated	p.K181Q	0.941	45	0%	72	48.6%	8	62.5%	benign(0.011)	tolerated(0.5)	neutral(0.011)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56662629	56662629	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112736.1	-1	validated	p.K1254T	1.000	122	0%	145	46.2%	17	23.5%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56672778	56672778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112736.1	-1	validated	p.S927N	1.000	289	0%	123	39.8%	8	12.5%	possibly_damaging(0.692)	deleterious(0.01)	deleterious(0.653)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56680718	56680718	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112736.1	-1	validated	p.E683*	1.000	530	0%	424	39.9%	9	66.6%	-	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56681074	56681074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112736.1	-1	validated	p.R564Q	1.000	56	0%	81	45.7%	4	50%	probably_damaging(0.994)	tolerated(0.21)	deleterious(0.496)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56694767	56694767	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112736.1	-1	validated	p.E454*	1.000	337	0%	407	44.7%	3	33.3%	-	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56705702	56705702	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112736.1	-1	validated	p.E166*	1.000	147	0%	199	48.7%	4	50%	-	-	-	NULL
ARHGEF3	50650	genome.wustl.edu	37	3	56779340	56779340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128615.1	-1	reviewed	p.F287V	1.000	189	0%	185	38.4%	33	36.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,PatternScan_DH_1
ASB14	142686	genome.wustl.edu	37	3	57317240	57317240	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142733.2	-1	reviewed	p.E69*	1.000	249	0%	38	47.4%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
DNAH12	201625	genome.wustl.edu	37	3	57368516	57368516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178504.4	-1	validated	p.L2451I	1.000	208	0%	170	42.9%	0	-	benign(0.067)	tolerated(0.11)	neutral(0.276)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57391410	57391410	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178504.4	-1	validated	p.I2163	0.088	88	0%	50	44%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH12	201625	genome.wustl.edu	37	3	57430449	57430449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178504.4	-1	validated	p.I1484S	0.991	185	0%	134	45.5%	0	-	possibly_damaging(0.561)	deleterious(0)	deleterious(0.636)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH12	201625	genome.wustl.edu	37	3	57443877	57443877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178504.4	-1	validated	p.I978S	1.000	140	0%	120	44.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH12	201625	genome.wustl.edu	37	3	57509594	57509594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178504.4	-1	validated	p.R63I	0.008	155	0%	159	45.9%	0	-	benign(0.082)	deleterious(0.03)	neutral(0.370)	NULL
FAM3D	131177	genome.wustl.edu	37	3	58639413	58639413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138805.2	-1	validated	p.P37T	1.000	73	0%	34	44.1%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
PTPRG	5793	genome.wustl.edu	37	3	61734602	61734602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002841.3	+1	reviewed	p.A46T	0.997	206	0%	86	38.4%	8	62.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
PTPRG	5793	genome.wustl.edu	37	3	62142845	62142845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002841.3	+1	reviewed	p.E263K	1.000	200	0%	67	49.3%	21	33.3%	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRG	5793	genome.wustl.edu	37	3	62278218	62278218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002841.3	+1	reviewed	p.V1393A	1.000	255	0%	61	52.5%	35	28.5%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
CADPS	8618	genome.wustl.edu	37	3	62477082	62477082	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000491424	-1	known	p.S289P	0.999	243	0%	98	11.2%	2	0%	-	-	-	NULL
CADPS	8618	genome.wustl.edu	37	3	62477977	62477977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003716.3	-1	reviewed	p.L958I	1.000	167	0%	76	11.8%	0	-	possibly_damaging(0.712)	deleterious(0.01)	deleterious(0.663)	NULL
CADPS	8618	genome.wustl.edu	37	3	62484866	62484866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003716.3	-1	reviewed	p.L893I	1.000	371	0%	109	12.8%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_DUF1041
CADPS	8618	genome.wustl.edu	37	3	62518673	62518673	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000491424	-1	known	p.P28Q	1.000	146	0%	13	53.8%	0	-	-	-	-	NULL
SYNPR	132204	genome.wustl.edu	37	3	63594804	63594804	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130003.1	+1	validated	p.F138V	1.000	617	0%	108	42.6%	0	-	possibly_damaging(0.61)	deleterious(0.01)	deleterious(0.617)	HMMPfam_MARVEL
SNTN	132203	genome.wustl.edu	37	3	63649722	63649722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080537.1	+1	provisional	p.V132A	0.079	145	0%	54	44.4%	0	-	possibly_damaging(0.473)	deleterious(0.02)	deleterious(0.539)	superfamily_SSF47473
MAGI1	9223	genome.wustl.edu	37	3	65347011	65347011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033057.1	-1	reviewed	p.I1166S	1.000	263	0%	110	45.5%	16	81.2%	benign(0.026)	deleterious(0)	neutral(0.446)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI1	9223	genome.wustl.edu	37	3	65349223	65349223	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033057.1	-1	reviewed	p.R1138*	1.000	150	0%	35	42.9%	15	26.6%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI1	9223	genome.wustl.edu	37	3	65415473	65415473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033057.1	-1	reviewed	p.S630Y	1.000	218	0%	64	39.1%	7	28.5%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	superfamily_PDZ domain-like
ENSG00000206759	0	genome.wustl.edu	37	3	66343617	66343617	+	RNA	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384032	-1	novel	NULL	0.035	71	0%	40	30%	0	-	-	-	-	-
LRIG1	26018	genome.wustl.edu	37	3	66433550	66433550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015541.2	-1	validated	p.A783T	0.000	99	0%	23	47.8%	238	57.1%	benign(0.001)	tolerated(0.76)	neutral(0.001)	NULL
LRIG1	26018	genome.wustl.edu	37	3	66433734	66433734	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015541.2	-1	validated	p.P721	0.000	67	3%	16	43.8%	183	42.6%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
LRIG1	26018	genome.wustl.edu	37	3	66436539	66436539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015541.2	-1	validated	p.D552G	0.402	243	0%	102	48%	163	52.1%	benign(0.004)	tolerated(0.39)	neutral(0.016)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KBTBD8	84541	genome.wustl.edu	37	3	67053657	67053657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032505.2	+1	validated	p.K63T	1.000	195	0%	107	50.5%	0	-	possibly_damaging(0.464)	tolerated(0.41)	neutral(0.167)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
KBTBD8	84541	genome.wustl.edu	37	3	67053970	67053970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032505.2	+1	validated	p.K167N	1.000	94	0%	67	52.2%	0	-	benign(0.14)	tolerated(0.2)	neutral(0.061)	HMMPfam_BACK
FAM19A4	151647	genome.wustl.edu	37	3	68788316	68788316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005527.1	-1	reviewed	p.M107I	1.000	239	0%	48	41.7%	0	-	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
TMF1	7110	genome.wustl.edu	37	3	69087783	69087783	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007114.2	-1	validated	p.E695*	1.000	223	0%	167	49.7%	17	17.6%	-	-	-	NULL
TMF1	7110	genome.wustl.edu	37	3	69097078	69097078	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007114.2	-1	validated	p.E260*	1.000	45	0%	59	30.5%	12	8.3%	-	-	-	NULL
FRMD4B	23150	genome.wustl.edu	37	3	69244248	69244248	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015123.1	-1	validated	p.G471	0.634	205	0%	169	40.8%	7	42.8%	-	-	-	NULL
FOXP1	27086	genome.wustl.edu	37	3	71021296	71021296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000327590	-1	known	p.A563D	1.000	4	0.000	15	0.533	1	100%	benign(0.29)	-	-	NULL
RYBP	23429	genome.wustl.edu	37	3	72428419	72428419	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012234.4	-1	validated	p.N96K	0.998	707	0%	355	39.2%	49	44.8%	possibly_damaging(0.662)	tolerated(0.52)	neutral(0.243)	NULL
PPP4R2	151987	genome.wustl.edu	37	3	73114187	73114187	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174907.2	+1	provisional	p.E275*	0.990	112	0%	39	43.6%	43	23.2%	-	-	-	NULL
ZNF717	100131827	genome.wustl.edu	37	3	75786289	75786289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128223.1	-1	validated	p.L829I	0.010	113	0.9%	52	63.5%	0	-	possibly_damaging(0.924)	deleterious(0.04)	deleterious(0.722)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ROBO1	6091	genome.wustl.edu	37	3	78719422	78719422	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002941.3	-1	reviewed	p.R458*	1.000	42	0%	27	33.3%	18	11.1%	-	-	-	HMMPfam_I-set,superfamily_Immunoglobulin
GBE1	2632	genome.wustl.edu	37	3	81539564	81539564	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000158.3	-1	reviewed	p.R701Q	0.216	194	0.5%	28	53.6%	84	30.9%	-	-	-	NULL
POU1F1	5449	genome.wustl.edu	37	3	87309172	87309172	+	Nonsense_Mutation	SNP	C	C	A	rs104893760	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122757.1	-1	reviewed	p.E276*	1.000	141	0%	66	34.8%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
PROS1	5627	genome.wustl.edu	37	3	93595919	93595919	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000313.3	-1	reviewed	p.S587	0.000	160	0%	124	53.2%	4	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
PROS1	5627	genome.wustl.edu	37	3	93598059	93598059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000313.3	-1	reviewed	p.N531S	0.876	86	0%	39	64.1%	4	0%	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
PROS1	5627	genome.wustl.edu	37	3	93603737	93603737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000313.3	-1	reviewed	p.N443D	1.000	130	0%	104	44.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
PROS1	5627	genome.wustl.edu	37	3	93619774	93619774	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000313.3	-1	reviewed	e7-1	1.000	123	0.8%	59	52.5%	0	-	-	-	-	-
PROS1	5627	genome.wustl.edu	37	3	93624973	93624973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000313.3	-1	reviewed	p.C121R	1.000	110	0%	75	46.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
NSUN3	63899	genome.wustl.edu	37	3	93803192	93803192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022072.3	+1	provisional	p.L122I	0.999	174	0%	148	37.8%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335
EPHA6	285220	genome.wustl.edu	37	3	96533745	96533745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080448.2	+1	provisional	p.R93I	0.001	13	0%	24	50%	0	-	benign(0.303)	deleterious(0)	deleterious(0.538)	NULL
EPHA6	285220	genome.wustl.edu	37	3	97202879	97202879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080448.2	+1	provisional	p.R726C	1.000	93	0%	99	34.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
OR5H6	79295	genome.wustl.edu	37	3	97984015	97984015	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005479.1	+1	provisional	p.V296G	0.003	116	0%	53	37.7%	0	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_7tm_1,superfamily_SSF81321
OR5H2	79310	genome.wustl.edu	37	3	98001737	98001737	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005482.1	+1	provisional	p.S2	0.000	173	0%	51	51%	0	-	-	-	-	superfamily_SSF81321
OR5H2	79310	genome.wustl.edu	37	3	98002001	98002001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005482.1	+1	provisional	p.F90L	0.002	246	0%	85	11.8%	0	-	benign(0.006)	tolerated(0.25)	neutral(0.037)	HMMPfam_7tm_1,superfamily_SSF81321
OR5H2	79310	genome.wustl.edu	37	3	98002206	98002206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005482.1	+1	provisional	p.L159I	0.000	156	0%	79	39.2%	0	-	benign(0.006)	tolerated(0.33)	neutral(0.024)	HMMPfam_7tm_1,superfamily_SSF81321
OR5H2	79310	genome.wustl.edu	37	3	98002514	98002514	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005482.1	+1	provisional	p.I261	0.867	194	0%	81	40.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5K4	403278	genome.wustl.edu	37	3	98073490	98073490	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005517.1	+1	provisional	p.G265*	0.127	242	0%	65	36.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5K3	403277	genome.wustl.edu	37	3	98109819	98109819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005516.1	+1	provisional	p.L104I	0.986	659	0.2%	118	43.2%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_7tm_1,superfamily_SSF81321
CPOX	1371	genome.wustl.edu	37	3	98309956	98309956	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000097.5	-1	reviewed	p.F200	1.000	122	0%	165	45.5%	20	40%	-	-	-	HMMPfam_Coprogen_oxidas,superfamily_Coprogen_oxidas
FILIP1L	11259	genome.wustl.edu	37	3	99568782	99568782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182909.2	-1	validated	p.D580Y	1.000	196	0%	71	47.9%	10	10%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
C3orf26	84319	genome.wustl.edu	37	3	99895197	99895197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032359.3	+1	validated	p.F232V	1.000	235	0%	133	47.4%	72	43%	benign(0.146)	tolerated(0.5)	neutral(0.022)	superfamily_SSF52540
TBC1D23	55773	genome.wustl.edu	37	3	100039799	100039799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018309.2	+1	validated	p.I653V	1.000	84	0%	112	56.2%	9	66.6%	benign(0.002)	tolerated(0.2)	neutral(0.049)	NULL
LNP1	348801	genome.wustl.edu	37	3	100170663	100170663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001085451.1	+1	validated	p.R86I	0.396	158	0%	70	40%	4	25%	possibly_damaging(0.733)	deleterious(0.02)	deleterious(0.651)	NULL
TMEM45A	55076	genome.wustl.edu	37	3	100274241	100274241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018004.1	+1	provisional	p.L62F	0.017	364	0%	199	50.8%	30	50%	probably_damaging(0.978)	tolerated(0.34)	neutral(0.444)	NULL
GPR128	84873	genome.wustl.edu	37	3	100364905	100364905	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032787.2	+1	validated	p.N355Y	0.000	128	0%	115	40.9%	0	-	possibly_damaging(0.834)	deleterious(0.05)	deleterious(0.663)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100497178	100497178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015429.3	-1	validated	p.R717Q	0.497	380	0%	81	39.5%	2	0%	possibly_damaging(0.925)	tolerated(0.14)	deleterious(0.623)	NULL
ABI3BP	25890	genome.wustl.edu	37	3	100523681	100523681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015429.3	-1	validated	p.K568E	0.970	290	0%	58	34.5%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
IMPG2	50939	genome.wustl.edu	37	3	100962659	100962659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016247.2	-1	validated	p.S839L	1.000	454	0.2%	71	40.8%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
IMPG2	50939	genome.wustl.edu	37	3	101038576	101038576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016247.2	-1	validated	p.K62N	0.039	283	0%	51	37.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SENP7	57337	genome.wustl.edu	37	3	101051738	101051738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000394085	-1	known	p.L5V	0.002	59	0%	74	48.6%	1	0%	unknown(0)	-	-	superfamily_SSF54001
SENP7	57337	genome.wustl.edu	37	3	101062618	101062618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020654.3	-1	validated	p.S673Y	1.000	118	0%	65	43.1%	4	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SENP7	57337	genome.wustl.edu	37	3	101085529	101085529	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020654.3	-1	validated	p.E355*	0.088	143	0%	89	39.3%	2	50%	-	-	-	NULL
RG9MTD1	54931	genome.wustl.edu	37	3	101283658	101283658	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017819.2	+1	provisional	p.V11	0.000	178	0%	241	43.2%	18	77.7%	-	-	-	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101384127	101384127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014415.3	-1	validated	p.S435Y	0.014	99	0%	121	38%	7	28.5%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
FAM55C	91775	genome.wustl.edu	37	3	101520664	101520664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134456.1	+1	validated	p.V227M	0.988	54	0%	27	33.3%	6	83.3%	benign(0.218)	tolerated(0.07)	neutral(0.341)	HMMPfam_Neurexophilin
NFKBIZ	64332	genome.wustl.edu	37	3	101571022	101571022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031419.2	+1	reviewed	p.R128Q	1.000	100	0%	85	41.2%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
CBLB	868	genome.wustl.edu	37	3	105400574	105400574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170662.3	-1	validated	p.L764V	1.000	192	0%	103	47.6%	23	52.1%	benign(0)	deleterious(0)	neutral(0.445)	NULL
CCDC54	84692	genome.wustl.edu	37	3	107097309	107097309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032600.2	+1	provisional	p.R292I	0.005	291	0%	82	43.9%	0	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
DZIP3	9666	genome.wustl.edu	37	3	108388540	108388540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014648.3	+1	validated	p.Q812H	0.974	371	0.3%	99	42.4%	11	54.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MORC1	27136	genome.wustl.edu	37	3	108778680	108778680	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014429.3	-1	reviewed	p.K335M	1.000	530	0%	182	54.4%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
MORC1	27136	genome.wustl.edu	37	3	108788485	108788485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014429.3	-1	reviewed	p.R270I	1.000	272	0%	108	41.7%	0	-	possibly_damaging(0.805)	deleterious(0.04)	deleterious(0.652)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
DPPA4	55211	genome.wustl.edu	37	3	109050618	109050618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018189.3	-1	validated	p.Y118C	0.047	220	0%	130	36.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CD96	10225	genome.wustl.edu	37	3	111325557	111325557	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198196.2	+1	reviewed	p.I382M	0.000	111	0%	87	33.3%	1	0%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111603771	111603771	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134438.1	+1	validated	p.R283*	0.112	121	0.8%	63	46%	0	-	-	-	-	NULL
TMPRSS7	344805	genome.wustl.edu	37	3	111769524	111769524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042575.2	+1	validated	p.E240G	1.000	129	0%	46	39.1%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_CUB,superfamily_Spermadhesin CUB domain
TMPRSS7	344805	genome.wustl.edu	37	3	111780671	111780671	+	Silent	SNP	C	C	A	rs340142	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042575.2	+1	validated	p.R324	1.000	222	0%	53	54.7%	0	-	-	-	-	superfamily_Spermadhesin CUB domain
SLC9A10	285335	genome.wustl.edu	37	3	111927107	111927107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183061.1	-1	validated	p.Q635R	0.000	100	0%	68	48.5%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_Voltage-gated potassium channels
SLC9A10	285335	genome.wustl.edu	37	3	111927119	111927119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183061.1	-1	validated	p.S631Y	0.994	90	0%	74	43.2%	0	-	probably_damaging(0.982)	tolerated(0.23)	neutral(0.468)	superfamily_Voltage-gated potassium channels
ATG3	64422	genome.wustl.edu	37	3	112253070	112253070	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000402314	-1	known	p.T303	0.000	229	1.7%	82	48.8%	0	-	-	-	-	NULL
C3orf17	25871	genome.wustl.edu	37	3	112724492	112724492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015412.3	-1	validated	p.E532G	0.000	545	0%	125	24%	52	19.2%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
C3orf17	25871	genome.wustl.edu	37	3	112729911	112729911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015412.3	-1	validated	p.K298N	0.015	178	0%	101	52.5%	34	50%	possibly_damaging(0.566)	tolerated(0.07)	deleterious(0.512)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113377595	113377595	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009899.2	-1	validated	p.I978	0.269	111	0%	66	36.4%	4	50%	-	-	-	NULL
ATP6V1A	523	genome.wustl.edu	37	3	113503220	113503220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001690.2	+1	reviewed	p.G121R	1.000	194	0%	89	38.2%	30	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1407	57577	genome.wustl.edu	37	3	113753944	113753944	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020817.1	-1	predicted	p.E216*	0.891	377	0.3%	157	40.1%	1	0%	-	-	-	NULL
QTRTD1	79691	genome.wustl.edu	37	3	113786842	113786842	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024638.2	+1	provisional	p.E89*	1.000	607	0%	147	40.8%	7	0%	-	-	-	superfamily_tRNA_ribo_trans
ZNF80	7634	genome.wustl.edu	37	3	113955196	113955196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007136.3	-1	validated	p.E242D	1.000	146	0%	122	41%	0	-	possibly_damaging(0.441)	tolerated(0.05)	deleterious(0.489)	superfamily_SSF57667
ZNF80	7634	genome.wustl.edu	37	3	113955396	113955396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007136.3	-1	validated	p.L176V	0.001	168	0%	108	43.5%	0	-	possibly_damaging(0.589)	deleterious(0.01)	deleterious(0.609)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LSAMP	4045	genome.wustl.edu	37	3	115805269	115805269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002338.3	-1	reviewed	p.R97Q	1.000	201	0.5%	58	50%	2	0%	possibly_damaging(0.458)	tolerated(0.41)	neutral(0.165)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
B4GALT4	8702	genome.wustl.edu	37	3	118945829	118945829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003778.3	-1	reviewed	p.N105H	1.000	117	0%	58	12.1%	31	16.1%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
POGLUT1	56983	genome.wustl.edu	37	3	119198923	119198923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152305.2	+1	validated	p.Y161C	1.000	206	0%	109	42.2%	6	33.3%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_SM00672,HMMPfam_DUF821
TIMMDC1	51300	genome.wustl.edu	37	3	119219553	119219553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016589.3	+1	validated	p.R69I	0.001	235	0%	141	51.8%	53	43.3%	benign(0.069)	tolerated(0.05)	neutral(0.350)	NULL
POPDC2	64091	genome.wustl.edu	37	3	119373456	119373456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022135.2	-1	reviewed	p.R166C	1.000	130	0%	33	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Popeye,superfamily_cAMP-binding domain-like
GSK3B	2932	genome.wustl.edu	37	3	119666194	119666194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002093.3	-1	reviewed	p.R96Q	1.000	136	0%	55	41.8%	15	60%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GSK3B	2932	genome.wustl.edu	37	3	119812193	119812193	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002093.3	-1	reviewed	e1+1	1.000	64	0%	93	44.1%	1	100%	-	-	-	-
STXBP5L	9515	genome.wustl.edu	37	3	120628481	120628481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014980.2	+1	validated	p.G19D	1.000	88	0%	94	11.7%	0	-	possibly_damaging(0.49)	tolerated(0.34)	neutral(0.186)	NULL
STXBP5L	9515	genome.wustl.edu	37	3	120941972	120941972	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014980.2	+1	validated	p.F360C	1.000	148	0%	45	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like,HMMPfam_LLGL
STXBP5L	9515	genome.wustl.edu	37	3	120957912	120957912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014980.2	+1	validated	p.L427I	1.000	73	0%	34	50%	0	-	benign(0.422)	tolerated(0.05)	deleterious(0.482)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STXBP5L	9515	genome.wustl.edu	37	3	121100163	121100163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014980.2	+1	validated	p.R815C	1.000	90	0%	39	48.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
STXBP5L	9515	genome.wustl.edu	37	3	121132018	121132018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014980.2	+1	validated	p.R1012C	1.000	226	0%	50	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STXBP5L	9515	genome.wustl.edu	37	3	121134764	121134764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014980.2	+1	validated	p.L1083I	1.000	193	0%	57	43.9%	0	-	possibly_damaging(0.59)	deleterious(0.01)	deleterious(0.610)	NULL
POLQ	10721	genome.wustl.edu	37	3	121151779	121151779	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199420.3	-1	validated	p.E2549*	1.000	196	0%	58	51.7%	11	63.6%	-	-	-	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_DNA/RNA polymerases
POLQ	10721	genome.wustl.edu	37	3	121258412	121258412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199420.3	-1	validated	p.K167Q	1.000	151	0%	94	39.4%	3	100%	benign(0.08)	deleterious(0.04)	neutral(0.354)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARGFX	503582	genome.wustl.edu	37	3	121305072	121305072	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012659.1	+1	validated	p.W191*	0.000	460	0%	176	45.5%	0	-	-	-	-	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121415008	121415008	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004487.3	-1	validated	p.E1449	0.952	215	0%	100	46%	5	20%	-	-	-	superfamily_Prefoldin
GOLGB1	2804	genome.wustl.edu	37	3	121416396	121416396	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004487.3	-1	validated	p.E987*	1.000	92	0%	70	17.1%	10	0%	-	-	-	superfamily_Spectrin repeat
IQCB1	9657	genome.wustl.edu	37	3	121518129	121518129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001023570.2	-1	reviewed	p.R227K	1.000	98	0%	28	39.3%	7	14.2%	possibly_damaging(0.451)	tolerated(0.2)	neutral(0.197)	NULL
CD86	942	genome.wustl.edu	37	3	121838341	121838341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175862.3	+1	reviewed	p.S317L	0.000	99	0%	76	48.7%	6	0%	unknown(0)	tolerated(1)	-	NULL
CASR	846	genome.wustl.edu	37	3	121975969	121975969	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000388.3	+1	reviewed	p.F76C	1.000	203	0%	125	48.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CASR	846	genome.wustl.edu	37	3	121976107	121976107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000388.3	+1	reviewed	p.S122Y	1.000	178	0.6%	109	45.9%	0	-	probably_damaging(0.992)	tolerated(0.2)	deleterious(0.496)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CCDC58	131076	genome.wustl.edu	37	3	122090611	122090611	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017928.2	-1	validated	p.I30L	1.000	155	0%	101	49.5%	45	55.5%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_Cid2
FAM162A	26355	genome.wustl.edu	37	3	122121679	122121679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014367.3	+1	validated	p.R36K	0.025	217	0%	126	32.5%	490	47.9%	benign(0.032)	tolerated(0.22)	neutral(0.044)	HMMPfam_DUF1075
PARP15	165631	genome.wustl.edu	37	3	122334619	122334619	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152615.1	+1	validated	p.Y21*	0.773	120	0%	122	42.6%	0	-	-	-	-	NULL
PARP15	165631	genome.wustl.edu	37	3	122354883	122354883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113523.1	+1	validated	p.K658T	0.000	332	0%	110	45.5%	0	-	benign(0.008)	tolerated(0.61)	neutral(0.004)	HMMPfam_PARP,superfamily_ADP-ribosylation
PARP14	54625	genome.wustl.edu	37	3	122419377	122419377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017554.2	+1	validated	p.K659T	0.000	44	0%	41	41.5%	5	100%	benign(0.002)	tolerated(0.36)	neutral(0.020)	NULL
PARP14	54625	genome.wustl.edu	37	3	122437795	122437795	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017554.2	+1	validated	p.T1599	0.000	103	0%	37	40.5%	26	65.3%	-	-	-	NULL
ADCY5	111	genome.wustl.edu	37	3	123010005	123010005	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183357.1	-1	validated	p.V1094	0.925	44	0%	24	41.7%	0	-	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
KALRN	8997	genome.wustl.edu	37	3	123987718	123987718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024660.3	+1	reviewed	p.F193L	1.000	80	0%	33	42.4%	6	16.6%	probably_damaging(0.986)	tolerated(0.15)	deleterious(0.675)	HMMPfam_Spectrin,HMMSmart_SM00150
KALRN	8997	genome.wustl.edu	37	3	124044891	124044891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024660.3	+1	reviewed	p.Y384C	1.000	92	0%	30	50%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124117549	124117549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024660.3	+1	reviewed	p.S724L	1.000	40	0%	22	27.3%	3	66.6%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00150,superfamily_Spectrin repeat
UMPS	7372	genome.wustl.edu	37	3	124449412	124449412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000373.3	+1	reviewed	p.L32V	0.180	89	0%	45	13.3%	30	23.3%	benign(0.001)	tolerated(0.23)	neutral(0.042)	superfamily_PRTase-like
MUC13	56667	genome.wustl.edu	37	3	124627191	124627191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033049.2	-1	validated	p.N447D	0.078	113	0%	79	34.2%	1	0%	possibly_damaging(0.649)	tolerated(0.18)	neutral(0.284)	NULL
MUC13	56667	genome.wustl.edu	37	3	124642454	124642454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033049.2	-1	validated	p.S185L	0.132	139	0%	104	42.3%	0	-	possibly_damaging(0.896)	deleterious(0.03)	deleterious(0.718)	HMMSmart_SM00181,superfamily_EGF/Laminin
ZNF148	7707	genome.wustl.edu	37	3	124952143	124952143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021964.2	-1	validated	p.Y476C	1.000	206	0%	39	20.5%	24	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNX4	8723	genome.wustl.edu	37	3	125199091	125199091	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003794.2	-1	reviewed	p.A242	0.994	125	0%	60	51.7%	36	52.7%	-	-	-	NULL
SNX4	8723	genome.wustl.edu	37	3	125208288	125208288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003794.2	-1	reviewed	p.A206V	1.000	171	0%	245	48.2%	48	43.7%	benign(0.282)	deleterious(0.04)	neutral(0.435)	NULL
KLF15	28999	genome.wustl.edu	37	3	126071033	126071033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014079.3	-1	validated	p.N245D	0.340	9	0.000	24	0.375	3	33.3%	benign(0.004)	tolerated(0.79)	neutral(0.001)	NULL
UROC1	131669	genome.wustl.edu	37	3	126220075	126220075	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144639.2	-1	reviewed	p.N317	0.993	59	0%	113	44.2%	0	-	-	-	-	HMMPfam_Urocanase,superfamily_Urocanase
NUP210P1	255330	genome.wustl.edu	37	3	126380716	126380716	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_040326.2	+1	model	NULL	0.996	26	0%	30	36.7%	0	-	-	-	-	-
PODXL2	50512	genome.wustl.edu	37	3	127379726	127379726	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015720.2	+1	validated	p.A285	0.000	24	0%	17	35.3%	44	54.5%	-	-	-	NULL
KIAA1257	57501	genome.wustl.edu	37	3	128696996	128696996	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020741.2	-1	predicted	p.L234V	0.000	357	0%	302	43.4%	0	-	probably_damaging(0.981)	deleterious(0.05)	deleterious(0.771)	NULL
CCDC48	79825	genome.wustl.edu	37	3	128751712	128751712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000480450	+1	known	p.E396K	0.736	22	0%	31	35.5%	0	-	benign(0.35)	tolerated(0.22)	neutral(0.153)	NULL
COPG1	22820	genome.wustl.edu	37	3	128994036	128994036	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016128.3	+1	validated	e23-1	1.000	262	0%	213	45.1%	1	0%	-	-	-	-
C3orf25	90288	genome.wustl.edu	37	3	129137112	129137112	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000326085	-1	known	p.I222	0.002	153	0%	42	40.5%	1	100%	-	-	-	superfamily_SSF47473
LOC100288961	100288961	genome.wustl.edu	37	3	129140408	129140408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342397.1	+1	model	p.L52V	0.002	317	0%	98	46.9%	2	100%	possibly_damaging(0.924)	deleterious(0.03)	deleterious(0.738)	NULL
MBD4	8930	genome.wustl.edu	37	3	129155413	129155413	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003925.1	-1	reviewed	p.I358	0.014	187	0%	177	42.9%	49	26.5%	-	-	-	NULL
MBD4	8930	genome.wustl.edu	37	3	129156083	129156083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003925.1	-1	reviewed	p.S135Y	0.532	59	0%	78	42.3%	23	34.7%	benign(0.155)	tolerated(0.18)	neutral(0.070)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
MBD4	8930	genome.wustl.edu	37	3	129158616	129158616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003925.1	-1	reviewed	p.T21A	0.000	29	0%	28	42.9%	20	40%	unknown(0)	tolerated(0.41)	-	NULL
IFT122	55764	genome.wustl.edu	37	3	129180095	129180095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000512157	+1	known	p.L86I	1.000	334	0%	214	40.7%	4	25%	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	HMMSmart_SM00320,superfamily_WD40 repeat-like
COL6A5	256076	genome.wustl.edu	37	3	130095105	130095105	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153264.5	+1	validated	p.V31	0.087	172	0%	38	44.7%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130095663	130095663	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153264.5	+1	validated	p.V217	0.000	124	0%	25	64%	0	-	-	-	-	NULL
COL6A5	256076	genome.wustl.edu	37	3	130107815	130107815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153264.5	+1	validated	p.R752W	0.941	188	0%	34	35.3%	0	-	probably_damaging(1)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130114217	130114217	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153264.5	+1	validated	p.K1159N	0.479	69	0%	48	27.1%	0	-	possibly_damaging(0.868)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130137737	130137737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153264.5	+1	validated	p.L1638I	0.000	236	0%	35	42.9%	0	-	benign(0)	-	-	HMMPfam_Collagen
COL6A5	256076	genome.wustl.edu	37	3	130174364	130174364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153264.5	+1	validated	p.S2215Y	0.000	78	0%	26	100%	0	-	benign(0.003)	-	-	NULL
COL6A6	131873	genome.wustl.edu	37	3	130284134	130284134	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102608.1	+1	provisional	p.F320V	0.957	73	0%	56	37.5%	0	-	probably_damaging(1)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130300892	130300892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102608.1	+1	provisional	p.S1317Y	1.000	281	0%	296	35.1%	0	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130394107	130394107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102608.1	+1	provisional	p.F2220V	0.993	177	0%	97	46.4%	0	-	probably_damaging(0.957)	-	-	NULL
ATP2C1	27032	genome.wustl.edu	37	3	130714929	130714929	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001486.1	+1	reviewed	p.K700N	1.000	49	0%	52	50%	67	53.7%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_Calcium ATPase transmembrane domain M
ASTE1	28990	genome.wustl.edu	37	3	130743013	130743013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014065.2	-1	validated	p.L380I	0.983	178	0%	109	44%	6	16.6%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
ASTE1	28990	genome.wustl.edu	37	3	130743298	130743298	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014065.2	-1	validated	p.R285*	0.009	205	0%	117	40.2%	4	50%	-	-	-	NULL
MRPL3	11222	genome.wustl.edu	37	3	131220529	131220529	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000511168	-1	known	p.S56P	0.909	48	0%	97	45.4%	140	42.8%	-	-	-	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132172911	132172911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015268.3	+1	validated	p.V281A	1.000	35	0%	69	40.6%	2	0%	possibly_damaging(0.734)	deleterious(0)	deleterious(0.713)	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132209855	132209855	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015268.3	+1	validated	p.E1195*	1.000	23	0%	26	61.5%	4	25%	-	-	-	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132213003	132213003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015268.3	+1	validated	p.D1281Y	1.000	44	0%	40	45%	3	0%	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	superfamily_ARM repeat
NPHP3	27031	genome.wustl.edu	37	3	132407706	132407706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153240.3	-1	reviewed	p.E971D	1.000	52	0%	35	51.4%	12	66.6%	probably_damaging(0.985)	tolerated(0.23)	deleterious(0.473)	HMMSmart_SM00028,superfamily_TPR-like
NPHP3	27031	genome.wustl.edu	37	3	132424594	132424594	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153240.3	-1	reviewed	p.I447S	1.000	49	0%	74	35.1%	3	33.3%	benign(0.023)	deleterious(0.01)	neutral(0.407)	NULL
TF	7018	genome.wustl.edu	37	3	133475801	133475801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001063.3	+1	reviewed	p.R273Q	0.995	91	0%	42	38.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
SLCO2A1	6578	genome.wustl.edu	37	3	133653613	133653613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005630.2	-1	validated	p.W626G	1.000	132	0%	59	42.4%	8	75%	unknown(0)	deleterious(0)	-	superfamily_MFS_gen_substrate_transporter
KY	339855	genome.wustl.edu	37	3	134366278	134366278	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178554.4	-1	validated	p.H66	0.161	117	0%	235	40%	0	-	-	-	-	NULL
EPHB1	2047	genome.wustl.edu	37	3	134514528	134514528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004441.4	+1	reviewed	p.E19K	1.000	28	0%	10	60%	0	-	benign(0.005)	deleterious(0)	neutral(0.445)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHB1	2047	genome.wustl.edu	37	3	134977865	134977865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004441.4	+1	reviewed	p.R953I	1.000	150	0%	66	50%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
PPP2R3A	5523	genome.wustl.edu	37	3	135720957	135720957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002718.3	+1	reviewed	p.S206F	1.000	117	0%	29	27.6%	2	50%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
PPP2R3A	5523	genome.wustl.edu	37	3	135721828	135721828	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002718.3	+1	reviewed	p.D496	0.820	55	0%	33	30.3%	6	50%	-	-	-	NULL
PPP2R3A	5523	genome.wustl.edu	37	3	135722118	135722118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002718.3	+1	reviewed	p.R593Q	1.000	140	0%	34	41.2%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MSL2	55167	genome.wustl.edu	37	3	135870401	135870401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018133.3	-1	validated	p.H441R	1.000	140	0%	141	44%	18	38.8%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
MSL2	55167	genome.wustl.edu	37	3	135870847	135870847	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018133.3	-1	validated	p.P292	0.736	104	0%	76	43.4%	13	61.5%	-	-	-	NULL
MSL2	55167	genome.wustl.edu	37	3	135871184	135871184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018133.3	-1	validated	p.S180I	0.998	126	0%	80	51.2%	10	30%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	NULL
STAG1	10274	genome.wustl.edu	37	3	136196197	136196197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005862.2	-1	reviewed	p.K320N	1.000	277	0%	134	44%	32	46.8%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_ARM-type_fold
SLC35G2	80723	genome.wustl.edu	37	3	136574302	136574302	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001097599.1	+1	validated	p.G334*	1.000	552	0%	208	39.4%	1	0%	-	-	-	HMMPfam_DUF6,superfamily_SSF103481
SOX14	8403	genome.wustl.edu	37	3	137484272	137484272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004189.2	+1	reviewed	p.V216I	0.999	27	0%	14	50%	0	-	benign(0.35)	deleterious(0.01)	deleterious(0.517)	NULL
CLDN18	51208	genome.wustl.edu	37	3	137729266	137729266	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016369.3	+1	validated	p.F67V	0.987	136	0%	20	55%	1	0%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_PMP22_Claudin
DZIP1L	199221	genome.wustl.edu	37	3	137807227	137807227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173543.2	-1	validated	p.E331D	0.000	86	0%	27	51.9%	0	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	NULL
NME9	347736	genome.wustl.edu	37	3	138033250	138033250	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178130.2	-1	provisional	e4-1	1.000	178	0.6%	137	38.7%	0	-	-	-	-	-
NME9	347736	genome.wustl.edu	37	3	138037034	138037034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178130.2	-1	provisional	p.E53K	0.230	174	0%	116	43.1%	0	-	benign(0.15)	tolerated(0.17)	neutral(0.072)	superfamily_Thiordxn-like_fd
PRR23C	389152	genome.wustl.edu	37	3	138762842	138762842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134657.1	-1	validated	p.E207D	0.000	84	0%	42	57.1%	0	-	benign(0.39)	tolerated(0.1)	neutral(0.411)	HMMPfam_DUF2476
COPB2	9276	genome.wustl.edu	37	3	139088134	139088134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004766.2	-1	validated	p.L457R	1.000	133	0%	50	48%	116	39.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Coatomer_WDAD,superfamily_Amine_DH_B_like
CLSTN2	64084	genome.wustl.edu	37	3	140277680	140277680	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022131.2	+1	validated	p.P674	0.000	73	0%	30	33.3%	2	50%	-	-	-	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141161649	141161649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080412.2	+1	validated	p.E140G	0.564	104	0%	61	39.3%	2	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141163082	141163082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080412.2	+1	validated	p.F618L	0.874	82	0%	49	53.1%	8	37.5%	possibly_damaging(0.791)	tolerated(0.32)	neutral(0.321)	NULL
RASA2	5922	genome.wustl.edu	37	3	141326558	141326558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006506.2	+1	reviewed	p.L658I	1.000	47	0%	54	40.7%	4	50%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ATP1B3	483	genome.wustl.edu	37	3	141595722	141595722	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001679.2	+1	reviewed	p.E27*	1.000	8	0.000	14	0.500	44	11.3%	-	-	-	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1
XRN1	54464	genome.wustl.edu	37	3	142142427	142142427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019001.3	-1	validated	p.R229*	1.000	161	0%	238	45%	2	0%	-	-	-	NULL
XRN1	54464	genome.wustl.edu	37	3	142145634	142145634	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019001.3	-1	validated	p.E120*	1.000	212	0.5%	278	43.5%	2	0%	-	-	-	HMMPfam_XRN_N
ATR	545	genome.wustl.edu	37	3	142232477	142232477	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001184.3	-1	reviewed	p.R1503*	1.000	179	0.6%	76	34.2%	1	0%	-	-	-	superfamily_ARM repeat
ATR	545	genome.wustl.edu	37	3	142257449	142257449	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001184.3	-1	reviewed	p.V1200	1.000	126	0%	38	31.6%	1	0%	-	-	-	HMMPfam_UME,HMMSmart_SM00802,superfamily_ARM repeat
ATR	545	genome.wustl.edu	37	3	142272169	142272169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001184.3	-1	reviewed	p.S902Y	1.000	117	0%	61	9.8%	5	0%	probably_damaging(0.983)	tolerated(0.57)	neutral(0.435)	superfamily_ARM repeat
TRPC1	7220	genome.wustl.edu	37	3	142499812	142499812	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003304.4	+1	validated	p.L267	0.994	74	0%	54	42.6%	1	0%	-	-	-	NULL
TRPC1	7220	genome.wustl.edu	37	3	142499836	142499836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003304.4	+1	validated	p.R275C	1.000	53	0%	44	68.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPC1	7220	genome.wustl.edu	37	3	142521010	142521010	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003304.4	+1	validated	e9-1	1.000	322	0%	123	39.8%	0	-	-	-	-	-
TRPC1	7220	genome.wustl.edu	37	3	142524989	142524989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003304.4	+1	validated	p.R731H	1.000	147	0%	37	45.9%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
PAQR9	344838	genome.wustl.edu	37	3	142681357	142681357	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000492509	-1	known	p.R15C	0.443	12	0%	17	29.4%	0	-	-	-	-	NULL
U2SURP	23350	genome.wustl.edu	37	3	142769823	142769823	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000467348	+1	known	p.K182T	1.000	42	0%	76	39.5%	107	56%	-	-	-	NULL
PLOD2	5352	genome.wustl.edu	37	3	145795649	145795649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182943.2	-1	reviewed	p.K521N	1.000	69	0%	38	39.5%	10	0%	benign(0.122)	tolerated(0.26)	neutral(0.044)	NULL
PLOD2	5352	genome.wustl.edu	37	3	145824374	145824374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182943.2	-1	reviewed	p.D187G	1.000	218	0%	98	44.9%	86	54.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CPB1	1360	genome.wustl.edu	37	3	148563314	148563314	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001871.2	+1	reviewed	p.L294	0.394	133	0%	50	20%	0	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPA3	1359	genome.wustl.edu	37	3	148614460	148614460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001870.2	+1	reviewed	p.F407C	0.988	122	0%	51	39.2%	0	-	probably_damaging(0.972)	tolerated(0.17)	deleterious(0.473)	superfamily_Zn-dependent exopeptidases
HPS3	84343	genome.wustl.edu	37	3	148857971	148857971	+	Missense_Mutation	SNP	C	C	T	rs140810728	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032383.3	+1	reviewed	p.S133L	0.084	199	1%	130	44.6%	4	0%	benign(0.053)	tolerated(0.09)	neutral(0.300)	NULL
HPS3	84343	genome.wustl.edu	37	3	148858900	148858900	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032383.3	+1	reviewed	p.L270*	0.022	164	0%	154	34.4%	11	27.2%	-	-	-	NULL
CP	1356	genome.wustl.edu	37	3	148899877	148899877	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000096.3	-1	reviewed	p.I823	0.904	287	0%	137	39.4%	5	0%	-	-	-	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3
CP	1356	genome.wustl.edu	37	3	148903203	148903203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000096.3	-1	reviewed	p.D703G	1.000	231	0%	123	38.2%	2	0%	probably_damaging(0.954)	tolerated(0.07)	deleterious(0.717)	PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins
ANKUB1	389161	genome.wustl.edu	37	3	149485676	149485676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144960.1	-1	predicted	p.A258V	1.000	154	0%	48	43.8%	0	-	probably_damaging(0.977)	tolerated(1)	neutral(0.419)	HMMSmart_SM00248,superfamily_Ankyrin repeat
RNF13	11342	genome.wustl.edu	37	3	149589852	149589852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007282.4	+1	reviewed	p.E78*	1.000	250	0%	160	48.7%	17	47%	-	-	-	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain
SERP1	27230	genome.wustl.edu	37	3	150263456	150263456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000491660	-1	known	p.S65Y	0.000	113	0%	115	51.3%	1	0%	unknown(0)	-	-	NULL
EIF2A	83939	genome.wustl.edu	37	3	150281343	150281343	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000477551	+1	known	p.L103*	1.000	52	0%	87	48.3%	40	67.5%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	superfamily_WD40 repeat-like
FAM194A	131831	genome.wustl.edu	37	3	150387209	150387209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152394.3	-1	validated	p.R458Q	0.331	589	0%	124	47.6%	0	-	probably_damaging(0.989)	tolerated(0.38)	neutral(0.457)	NULL
MED12L	116931	genome.wustl.edu	37	3	150873978	150873978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053002.4	+1	reviewed	p.R196Q	1.000	107	0%	63	47.6%	0	-	possibly_damaging(0.596)	tolerated(0.24)	neutral(0.243)	NULL
MED12L	116931	genome.wustl.edu	37	3	150883693	150883693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053002.4	+1	reviewed	p.R473Q	1.000	393	0%	191	40.8%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
P2RY14	9934	genome.wustl.edu	37	3	150931532	150931532	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081455.1	-1	reviewed	p.F191	0.674	571	0%	108	46.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR87	53836	genome.wustl.edu	37	3	151012745	151012745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023915.3	-1	validated	p.R97*	0.176	329	0%	88	31.8%	1	100%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
P2RY12	64805	genome.wustl.edu	37	3	151056273	151056273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022788.3	-1	reviewed	p.D121N	1.000	92	0%	30	50%	1	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_7tm_1,superfamily_SSF81321
P2RY12	64805	genome.wustl.edu	37	3	151056576	151056576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022788.3	-1	reviewed	p.D20Y	0.980	166	0%	35	45.7%	0	-	benign(0.001)	-	-	superfamily_SSF81321
IGSF10	285313	genome.wustl.edu	37	3	151162996	151162996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178822.4	-1	validated	p.E1591D	0.000	277	0%	266	48.9%	0	-	benign(0.071)	deleterious(0.02)	neutral(0.388)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151165241	151165241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178822.4	-1	validated	p.S843Y	0.209	346	0.3%	110	41.8%	0	-	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151166050	151166050	+	Silent	SNP	G	G	A	rs193019990	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178822.4	-1	validated	p.V573	0.000	238	0%	131	46.6%	0	-	-	-	-	HMMPfam_I-set
AADAC	13	genome.wustl.edu	37	3	151532028	151532028	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001086.2	+1	reviewed	p.N26	0.000	56	0%	37	18.9%	0	-	-	-	-	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153867221	153867221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015595.3	+1	validated	p.R438I	1.000	110	0%	58	34.5%	1	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	superfamily_DBL homology domain (DH-domain)
ARHGEF26	26084	genome.wustl.edu	37	3	153870632	153870632	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015595.3	+1	validated	p.K466N	1.000	116	0%	46	45.7%	2	100%	probably_damaging(0.978)	tolerated(0.3)	neutral(0.449)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF26	26084	genome.wustl.edu	37	3	153912493	153912493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015595.3	+1	validated	p.K611Q	0.997	136	0%	68	45.6%	2	50%	possibly_damaging(0.574)	tolerated(0.15)	neutral(0.438)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF26	26084	genome.wustl.edu	37	3	153972532	153972532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015595.3	+1	validated	p.R798G	0.577	339	0%	52	50%	6	66.6%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMSmart_SM00326,superfamily_SH3-domain
GPR149	344758	genome.wustl.edu	37	3	154055687	154055687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001038705.1	-1	provisional	p.L666P	0.922	324	0%	188	42%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GPR149	344758	genome.wustl.edu	37	3	154147081	154147081	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001038705.1	-1	provisional	p.S108	0.921	46	0%	29	34.5%	0	-	-	-	-	NULL
PLCH1	23007	genome.wustl.edu	37	3	155314068	155314068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130960.1	-1	validated	p.R48Q	1.000	255	0%	98	49%	12	50%	possibly_damaging(0.874)	deleterious(0.04)	deleterious(0.689)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GMPS	8833	genome.wustl.edu	37	3	155632286	155632286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003875.2	+1	reviewed	p.R322I	1.000	204	0%	110	43.6%	81	44.4%	benign(0.01)	tolerated(0.08)	neutral(0.300)	superfamily_Adenine nucleotide alpha hydrolases-like
KCNAB1	7881	genome.wustl.edu	37	3	155838469	155838469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172160.2	+1	reviewed	p.Q23H	0.028	55	0%	39	38.5%	0	-	benign(0.253)	deleterious(0)	deleterious(0.471)	NULL
TIPARP	25976	genome.wustl.edu	37	3	156396336	156396336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015508.4	+1	reviewed	p.D284Y	1.000	36	0%	43	39.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCNL1	57018	genome.wustl.edu	37	3	156866359	156866359	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020307.2	-1	validated	p.R418*	1.000	268	0%	77	45.5%	48	33.3%	-	-	-	NULL
CCNL1	57018	genome.wustl.edu	37	3	156867164	156867164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020307.2	-1	validated	p.D382Y	1.000	357	0%	123	37.4%	43	25.5%	possibly_damaging(0.861)	tolerated(0.11)	deleterious(0.605)	NULL
CCNL1	57018	genome.wustl.edu	37	3	156868148	156868148	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020307.2	-1	validated	p.R233*	1.000	147	0%	46	50%	34	41.1%	-	-	-	HMMSmart_SM00385,superfamily_Cyclin-like
VEPH1	79674	genome.wustl.edu	37	3	157131864	157131864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024621.2	-1	validated	p.I238V	0.997	293	0%	50	36%	1	0%	benign(0)	tolerated(1)	-	NULL
SHOX2	6474	genome.wustl.edu	37	3	157820578	157820578	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006884.3	-1	reviewed	p.T148	1.000	202	0%	102	52%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
RSRC1	51319	genome.wustl.edu	37	3	157839940	157839940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016625.2	+1	provisional	p.R16I	1.000	149	0%	77	41.6%	17	52.9%	unknown(0)	deleterious(0)	-	NULL
RSRC1	51319	genome.wustl.edu	37	3	157920953	157920953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016625.2	+1	provisional	p.R138Q	0.326	274	0%	113	54%	32	56.2%	unknown(0)	deleterious(0)	-	NULL
RSRC1	51319	genome.wustl.edu	37	3	158254943	158254943	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016625.2	+1	provisional	p.S239A	1.000	123	0%	27	40.7%	44	56.8%	benign(0.198)	deleterious(0)	neutral(0.464)	NULL
MLF1	4291	genome.wustl.edu	37	3	158289151	158289151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000498592	+1	known	p.P11S	0.000	13	0%	36	38.9%	7	57.1%	possibly_damaging(0.771)	tolerated(0.25)	neutral(0.323)	HMMPfam_Mlf1IP
GFM1	85476	genome.wustl.edu	37	3	158364056	158364056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024996.5	+1	reviewed	p.D113Y	1.000	289	0%	224	47.3%	13	38.4%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_GTP_EFTU,superfamily_SSF52540
IFT80	57560	genome.wustl.edu	37	3	159986314	159986314	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020800.1	-1	validated	p.L704V	0.997	114	0%	82	48.8%	15	46.6%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	NULL
SMC4	10051	genome.wustl.edu	37	3	160148931	160148931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002800.1	+1	validated	p.L1018I	1.000	46	0%	66	37.9%	68	41.1%	benign(0.067)	tolerated(0.18)	neutral(0.060)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160151506	160151506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002800.1	+1	validated	p.S1259L	1.000	82	0%	129	41.9%	42	54.7%	benign(0.141)	deleterious(0)	neutral(0.457)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KPNA4	3840	genome.wustl.edu	37	3	160243798	160243798	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002268.3	-1	reviewed	p.R218	1.000	67	0%	107	44.9%	49	69.3%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
KPNA4	3840	genome.wustl.edu	37	3	160254612	160254612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002268.3	-1	reviewed	p.R29Q	1.000	149	0%	250	44%	41	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IBB
PPM1L	151742	genome.wustl.edu	37	3	160679684	160679684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139245.2	+1	provisional	p.S187F	1.000	155	0%	76	40.8%	4	25%	benign(0.159)	tolerated(0.08)	neutral(0.314)	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PPM1L	151742	genome.wustl.edu	37	3	160786763	160786763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139245.2	+1	provisional	p.S301A	1.000	144	0%	48	33.3%	3	66.6%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	HMMSmart_SM00331,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
OTOL1	131149	genome.wustl.edu	37	3	161221388	161221388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080440.1	+1	provisional	p.K364N	0.976	238	0%	45	42.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
OTOL1	131149	genome.wustl.edu	37	3	161221492	161221492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080440.1	+1	provisional	p.R399Q	0.607	230	0%	64	40.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
SI	6476	genome.wustl.edu	37	3	164700175	164700175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001041.3	-1	reviewed	p.L1757F	0.020	362	0%	70	31.4%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
SI	6476	genome.wustl.edu	37	3	164724704	164724704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001041.3	-1	reviewed	p.I1436L	0.003	157	0%	50	36%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164776843	164776843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001041.3	-1	reviewed	p.A436T	0.000	287	0%	50	38%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164777015	164777015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001041.3	-1	reviewed	p.G407R	0.255	242	0%	37	48.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SLITRK3	22865	genome.wustl.edu	37	3	164906306	164906306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014926.2	-1	validated	p.E771D	0.049	169	0%	43	58.1%	0	-	benign(0.002)	tolerated(0.93)	-	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906780	164906780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014926.2	-1	validated	p.E613D	0.998	106	0.9%	17	70.6%	0	-	benign(0.011)	tolerated(0.4)	neutral(0.017)	superfamily_SSF52058
ZBBX	79740	genome.wustl.edu	37	3	167016184	167016184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024687.2	-1	validated	p.R596S	0.986	377	0%	104	45.2%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167045832	167045832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024687.2	-1	validated	p.D254N	0.084	528	0%	88	42%	1	100%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
WDR49	151790	genome.wustl.edu	37	3	167240235	167240235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178824.3	-1	provisional	p.P529H	0.106	215	0%	58	39.7%	0	-	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	superfamily_WD40 repeat-like
LRRC31	79782	genome.wustl.edu	37	3	169557856	169557856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024727.2	-1	validated	p.L525I	0.083	281	0.7%	107	43%	1	100%	benign(0.156)	deleterious(0)	neutral(0.459)	NULL
SKIL	6498	genome.wustl.edu	37	3	170078393	170078393	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005414.3	+1	validated	p.Q92E	1.000	56	0%	104	44.2%	10	20%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SLC7A14	57709	genome.wustl.edu	37	3	170216509	170216509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020949.2	-1	validated	p.I236V	0.999	89	0%	46	41.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_AA_permease
SLC2A2	6514	genome.wustl.edu	37	3	170716177	170716177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000340.1	-1	reviewed	p.F393L	0.000	41	0%	12	50%	0	-	benign(0.001)	tolerated(0.66)	neutral(0.003)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
TNIK	23043	genome.wustl.edu	37	3	170797312	170797312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015028.2	-1	validated	p.K1148T	1.000	314	0%	116	54.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CNH,HMMSmart_SM00036
TNIK	23043	genome.wustl.edu	37	3	170856158	170856158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015028.2	-1	validated	p.R477H	1.000	390	0%	143	38.5%	2	50%	probably_damaging(0.989)	tolerated(0.05)	deleterious(0.785)	NULL
GHSR	2693	genome.wustl.edu	37	3	172165600	172165600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198407.2	-1	reviewed	p.E202K	1.000	43	0%	22	36.4%	0	-	benign(0.17)	tolerated(0.06)	neutral(0.338)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TNFSF10	8743	genome.wustl.edu	37	3	172232743	172232743	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003810.2	-1	reviewed	p.E60*	0.650	294	0%	94	39.4%	6	0%	-	-	-	NULL
SPATA16	83893	genome.wustl.edu	37	3	172607461	172607461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031955.5	-1	reviewed	p.L537I	0.982	193	0%	113	42.5%	0	-	benign(0.185)	tolerated(0.5)	neutral(0.027)	NULL
NLGN1	22871	genome.wustl.edu	37	3	173998849	173998849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014932.2	+1	reviewed	p.E743A	1.000	251	0%	18	44.4%	0	-	possibly_damaging(0.786)	deleterious(0.02)	deleterious(0.677)	NULL
NAALADL2	254827	genome.wustl.edu	37	3	175181199	175181199	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207015.2	+1	validated	p.V415	0.026	62	0%	55	50.9%	10	50%	-	-	-	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases
TBL1XR1	79718	genome.wustl.edu	37	3	176752059	176752059	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024665.4	-1	reviewed	p.E393*	1.000	271	0%	109	44%	24	20.8%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PIK3CA	5290	genome.wustl.edu	37	3	178916725	178916725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006218.2	+1	reviewed	p.R38C	1.000	47	0%	57	40.4%	11	45.4%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178916823	178916823	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006218.2	+1	reviewed	p.F70	1.000	78	0%	74	36.5%	4	0%	-	-	-	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178952018	178952018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006218.2	+1	reviewed	p.T1025S	1.000	155	0%	36	58.3%	17	47%	probably_damaging(1)	tolerated(0.83)	deleterious(0.500)	HMMSmart_PI3Kc,superfamily_Kinase_like
MFN1	55669	genome.wustl.edu	37	3	179069714	179069714	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033540.2	+1	reviewed	p.R47*	0.997	103	0%	108	46.3%	14	28.5%	-	-	-	NULL
GNB4	59345	genome.wustl.edu	37	3	179123026	179123026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021629.3	-1	reviewed	p.D290N	1.000	236	0%	84	35.7%	0	-	probably_damaging(0.978)	tolerated(0.28)	neutral(0.452)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
ACTL6A	86	genome.wustl.edu	37	3	179294017	179294017	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004301.3	+1	reviewed	p.G163	0.965	454	0%	299	39.8%	62	46.7%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
USP13	8975	genome.wustl.edu	37	3	179399696	179399696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003940.2	+1	validated	p.N67H	1.000	271	0%	114	41.2%	0	-	benign(0.106)	tolerated(0.19)	neutral(0.058)	NULL
PEX5L	51555	genome.wustl.edu	37	3	179593215	179593215	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016559.1	-1	provisional	p.R186*	0.985	397	0%	167	40.1%	0	-	-	-	-	NULL
TTC14	151613	genome.wustl.edu	37	3	180322127	180322127	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000462895	+1	known	e4+1	0.000	55	0%	79	34.2%	0	-	-	-	-	-
FXR1	8087	genome.wustl.edu	37	3	180671565	180671565	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005087.2	+1	reviewed	p.K273Q	0.997	515	0%	330	47.3%	115	51.3%	benign(0.015)	tolerated(0.3)	neutral(0.029)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ATP11B	23200	genome.wustl.edu	37	3	182547477	182547477	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014616.1	+1	validated	p.P84	0.906	94	0%	70	48.6%	4	0%	-	-	-	NULL
ATP11B	23200	genome.wustl.edu	37	3	182553889	182553889	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014616.1	+1	validated	p.R128*	1.000	318	0%	88	47.7%	6	16.6%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
ATP11B	23200	genome.wustl.edu	37	3	182563301	182563301	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014616.1	+1	validated	p.E254*	1.000	64	0%	58	39.7%	8	25%	-	-	-	superfamily_SSF81653
ATP11B	23200	genome.wustl.edu	37	3	182583391	182583391	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014616.1	+1	validated	p.L450V	0.000	103	0%	115	88.7%	5	80%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660
ATP11B	23200	genome.wustl.edu	37	3	182597360	182597360	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014616.1	+1	validated	p.E777*	1.000	110	0%	74	51.4%	9	0%	-	-	-	superfamily_SSF56784
ATP11B	23200	genome.wustl.edu	37	3	182605448	182605448	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000498086	+1	known	p.F731C	1.000	244	0%	144	43.1%	6	16.6%	-	-	-	NULL
ATP11B	23200	genome.wustl.edu	37	3	182607238	182607238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014616.1	+1	validated	p.L962I	1.000	163	0%	155	51%	4	0%	probably_damaging(0.974)	tolerated(0.65)	neutral(0.419)	NULL
DCUN1D1	54165	genome.wustl.edu	37	3	182683356	182683356	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020640.2	-1	validated	p.K63	1.000	122	0%	127	51.2%	38	52.6%	-	-	-	NULL
MCCC1	56922	genome.wustl.edu	37	3	182751858	182751858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020166.3	-1	reviewed	p.F534L	0.998	131	0%	155	12.3%	32	12.5%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
MCCC1	56922	genome.wustl.edu	37	3	182789060	182789060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020166.3	-1	reviewed	p.E193K	0.184	195	0%	67	41.8%	16	37.5%	benign(0.003)	tolerated(0.41)	neutral(0.015)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
MCCC1	56922	genome.wustl.edu	37	3	182790199	182790199	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020166.3	-1	reviewed	p.F149C	1.000	112	0%	96	50%	17	52.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like
MCF2L2	23101	genome.wustl.edu	37	3	182897875	182897875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015078.2	-1	validated	p.E1030A	0.951	106	0%	94	38.3%	0	-	benign(0.022)	tolerated(0.24)	neutral(0.038)	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182923939	182923939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015078.2	-1	validated	p.R926*	0.004	244	0%	100	52%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
MCF2L2	23101	genome.wustl.edu	37	3	182925518	182925518	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015078.2	-1	validated	p.R864*	0.971	376	0%	192	47.4%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KLHL6	89857	genome.wustl.edu	37	3	183212027	183212027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130446.2	-1	validated	p.S397L	0.994	177	0%	143	44.8%	1	0%	possibly_damaging(0.786)	tolerated(0.25)	neutral(0.331)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL24	54800	genome.wustl.edu	37	3	183396927	183396927	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017644.3	+1	validated	p.R552	1.000	72	0%	65	12.3%	17	17.6%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
YEATS2	55689	genome.wustl.edu	37	3	183508632	183508632	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000432781	+1	known	p.E173K	0.475	106	0%	64	43.8%	39	35.8%	-	-	-	NULL
ABCC5	10057	genome.wustl.edu	37	3	183706371	183706371	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005688.2	-1	reviewed	p.V144	1.000	53	0%	28	42.9%	8	50%	-	-	-	NULL
HTR3C	170572	genome.wustl.edu	37	3	183774718	183774718	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130770.2	+1	reviewed	p.R149*	0.000	276	0%	110	47.3%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
EIF2B5	8893	genome.wustl.edu	37	3	183859757	183859757	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003907.2	+1	reviewed	p.R401*	0.336	168	0%	65	46.2%	15	6.6%	-	-	-	superfamily_Trimer_LpxA_like
ABCF3	55324	genome.wustl.edu	37	3	183906042	183906042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018358.2	+1	validated	p.L228P	1.000	170	0%	94	17%	45	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ALG3	10195	genome.wustl.edu	37	3	183960741	183960741	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000446569	-1	known	p.R242C	0.004	53	0%	93	43%	44	61.3%	-	-	-	HMMPfam_ALG3
ECE2	9718	genome.wustl.edu	37	3	184005699	184005699	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014693.3	+1	validated	p.F564	0.996	95	0%	43	37.2%	0	-	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
PSMD2	5708	genome.wustl.edu	37	3	184023648	184023648	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000432855	+1	known	p.R5K	1.000	110	0%	87	43.7%	204	44.6%	-	-	-	NULL
EIF4G1	1981	genome.wustl.edu	37	3	184038427	184038427	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182917.3	+1	reviewed	p.R183*	1.000	73	0%	130	46.2%	69	23.1%	-	-	-	NULL
EIF4G1	1981	genome.wustl.edu	37	3	184039456	184039456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182917.3	+1	reviewed	p.N362D	0.997	40	0%	62	38.7%	87	63.2%	possibly_damaging(0.95)	tolerated(0.49)	neutral(0.404)	NULL
VPS8	23355	genome.wustl.edu	37	3	184587294	184587294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009921.2	+1	validated	p.R541Q	0.981	365	0%	61	42.6%	13	23%	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	NULL
MAP3K13	9175	genome.wustl.edu	37	3	185181416	185181416	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004721.3	+1	reviewed	p.E453*	1.000	130	0%	82	41.5%	0	-	-	-	-	NULL
IGF2BP2	10644	genome.wustl.edu	37	3	185367281	185367281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006548.4	-1	reviewed	p.F501L	1.000	158	0%	159	48.4%	3	33.3%	benign(0.086)	deleterious(0.03)	neutral(0.371)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
AHSG	197	genome.wustl.edu	37	3	186338716	186338716	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001622.2	+1	reviewed	p.V367	0.999	155	0%	21	52.4%	0	-	-	-	-	NULL
HRG	3273	genome.wustl.edu	37	3	186389556	186389556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000412.2	+1	reviewed	p.R179Q	0.000	183	0%	52	30.8%	0	-	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMSmart_SM00043,superfamily_Cystatin/monellin
KNG1	3827	genome.wustl.edu	37	3	186445073	186445073	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102416.2	+1	reviewed	p.T204	0.823	134	0%	183	39.9%	0	-	-	-	-	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
ST6GAL1	6480	genome.wustl.edu	37	3	186760512	186760512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003032.2	+1	reviewed	p.K7N	1.000	214	0%	80	47.5%	16	37.5%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	NULL
LEPREL1	55214	genome.wustl.edu	37	3	189688659	189688659	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018192.3	-1	validated	p.D613	0.343	236	0%	131	49.6%	2	0%	-	-	-	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
LEPREL1	55214	genome.wustl.edu	37	3	189706747	189706747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018192.3	-1	validated	p.E302K	1.000	103	0%	53	50.9%	2	100%	probably_damaging(0.957)	tolerated(0.21)	neutral(0.445)	superfamily_TPR-like
OSTN	344901	genome.wustl.edu	37	3	190936670	190936670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198184.1	+1	provisional	p.K79N	1.000	231	0%	95	50.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ATP13A5	344905	genome.wustl.edu	37	3	193016935	193016935	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198505.2	-1	provisional	p.M945L	1.000	75	0%	22	40.9%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	superfamily_SSF81665
ATP13A5	344905	genome.wustl.edu	37	3	193081101	193081101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198505.2	-1	provisional	p.S103N	1.000	139	0%	49	34.7%	0	-	benign(0.234)	tolerated(0.5)	neutral(0.034)	NULL
ATP13A4	84239	genome.wustl.edu	37	3	193160206	193160206	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000437904	-1	known	p.E46*	0.995	306	0%	137	32.8%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
CPN2	1370	genome.wustl.edu	37	3	194062312	194062312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080513.2	-1	validated	p.T374A	0.484	67	0%	36	41.7%	0	-	benign(0.029)	tolerated(0.4)	neutral(0.018)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_RNI-like
LRRC15	131578	genome.wustl.edu	37	3	194080802	194080802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135057.2	-1	validated	p.L330P	0.993	92	0%	91	46.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
GP5	2814	genome.wustl.edu	37	3	194118263	194118263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004488.2	-1	validated	p.S250L	0.011	26	0%	21	57.1%	0	-	possibly_damaging(0.638)	deleterious(0)	deleterious(0.668)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
ATP13A3	79572	genome.wustl.edu	37	3	194180612	194180612	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024524.3	-1	validated	p.K105T	0.812	156	0%	117	45.3%	13	30.7%	benign(0.174)	tolerated(0.56)	neutral(0.022)	NULL
LSG1	55341	genome.wustl.edu	37	3	194366927	194366927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018385.2	-1	reviewed	p.R530Q	1.000	92	0%	64	42.2%	37	51.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LSG1	55341	genome.wustl.edu	37	3	194371635	194371635	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000437613	-1	known	p.E199*	1.000	97	0%	109	42.2%	34	38.2%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACAP2	23527	genome.wustl.edu	37	3	195000152	195000152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012287.5	-1	validated	p.E748K	1.000	53	0%	93	38.7%	21	23.8%	possibly_damaging(0.943)	tolerated(0.09)	deleterious(0.684)	NULL
LOC651714	651714	genome.wustl.edu	37	3	195345839	195345839	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_078298.1	+1	model	NULL	0.397	186	0%	139	20.9%	4	0%	-	-	-	-
MUC4	4585	genome.wustl.edu	37	3	195490450	195490450	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018406.5	-1	reviewed	p.L4575	1.000	22	0%	15	46.7%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
MUC4	4585	genome.wustl.edu	37	3	195506816	195506816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018406.5	-1	reviewed	p.S3751P	0.947	8	0.000	143	0.343	0	-	benign(0.421)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195516941	195516941	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018406.5	-1	reviewed	p.E504*	0.001	243	0.4%	212	49.5%	0	-	-	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195518052	195518052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018406.5	-1	reviewed	p.M133I	0.000	590	0%	347	39.2%	0	-	benign(0.024)	tolerated(0.13)	neutral(0.254)	NULL
OSTalpha	200931	genome.wustl.edu	37	3	195956790	195956790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152672.5	+1	validated	p.S213Y	1.000	145	0%	61	47.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LRRC33	375387	genome.wustl.edu	37	3	196388263	196388263	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198565.1	+1	provisional	p.S583	0.000	50	0%	41	31.7%	2	0%	-	-	-	superfamily_SSF52058
PAK2	5062	genome.wustl.edu	37	3	196528890	196528890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002577.4	+1	reviewed	p.E94K	1.000	163	0%	280	43.6%	39	25.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_PBD,HMMSmart_PBD
SENP5	205564	genome.wustl.edu	37	3	196612627	196612627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152699.4	+1	validated	p.R192K	1.000	50	0%	41	43.9%	8	62.5%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
SENP5	205564	genome.wustl.edu	37	3	196650375	196650375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152699.4	+1	validated	p.I659V	1.000	255	0%	350	44%	4	100%	possibly_damaging(0.435)	deleterious(0.03)	deleterious(0.506)	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
FYTTD1	84248	genome.wustl.edu	37	3	197501072	197501072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032288.6	+1	validated	p.R216I	1.000	342	0.3%	270	41.1%	36	50%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_FYTT
RPL35A	6165	genome.wustl.edu	37	3	197678094	197678094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000996.2	+1	reviewed	p.A26T	1.000	188	0%	221	43.9%	3122	50.2%	benign(0.006)	tolerated(0.08)	neutral(0.300)	HMMPfam_Ribosomal_L35Ae
LMLN	89782	genome.wustl.edu	37	3	197702920	197702920	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136049.2	+1	reviewed	p.A123	1.000	63	0%	43	27.9%	0	-	-	-	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
FAM157A	728262	genome.wustl.edu	37	3	197894586	197894586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145248.1	+1	inferred	p.E310*	0.000	71	0%	41	24.4%	1	0%	-	-	-	NULL
ZNF732	654254	genome.wustl.edu	37	4	265585	265585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137608.1	-1	provisional	p.R354I	0.159	97	0%	74	44.6%	0	-	benign(0.041)	tolerated(0.42)	neutral(0.017)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667
ZNF721	170960	genome.wustl.edu	37	4	436861	436861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133474.2	-1	validated	p.K465N	0.032	134	0%	125	49.6%	11	45.4%	possibly_damaging(0.839)	tolerated(0.48)	neutral(0.331)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MYL5	4636	genome.wustl.edu	37	4	672539	672539	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002477.1	+1	reviewed	p.I32	1.000	11	0%	41	41.5%	14	28.5%	-	-	-	superfamily_EF-hand
KIAA1530	57654	genome.wustl.edu	37	4	1343638	1343638	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020894.2	+1	validated	p.K142T	0.999	12	0%	39	46.2%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
POLN	353497	genome.wustl.edu	37	4	2073817	2073817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000253313	-1	known	p.R590I	0.000	4	0.000	11	0.364	0	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	NULL
HAUS3	79441	genome.wustl.edu	37	4	2242323	2242323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024511.5	-1	provisional	p.I117M	0.998	70	0%	274	17.9%	11	27.2%	probably_damaging(0.96)	tolerated(0.17)	neutral(0.462)	NULL
ZFYVE28	57732	genome.wustl.edu	37	4	2274994	2274994	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020972.2	-1	validated	p.T743	0.332	58	0%	156	46.2%	1	0%	-	-	-	NULL
ZFYVE28	57732	genome.wustl.edu	37	4	2307220	2307220	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020972.2	-1	validated	p.E283*	1.000	13	0%	17	41.2%	2	0%	-	-	-	NULL
ZFYVE28	57732	genome.wustl.edu	37	4	2341209	2341209	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020972.2	-1	validated	p.F164	0.999	61	0%	28	46.4%	4	25%	-	-	-	NULL
ADD1	118	genome.wustl.edu	37	4	2877672	2877672	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014189.2	+1	reviewed	p.V10	1.000	137	0%	98	43.9%	30	43.3%	-	-	-	NULL
HTT	3064	genome.wustl.edu	37	4	3190682	3190682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002111.6	+1	reviewed	p.L1744I	0.998	335	0%	369	45.8%	16	62.5%	possibly_damaging(0.937)	tolerated(0.32)	neutral(0.407)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6043912	6043912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099433.1	-1	validated	p.K691Q	1.000	145	0%	172	45.3%	0	-	possibly_damaging(0.922)	tolerated(0.41)	neutral(0.387)	NULL
WFS1	7466	genome.wustl.edu	37	4	6304159	6304159	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006005.3	+1	reviewed	p.F879	1.000	7	0.000	10	0.500	93	39.7%	-	-	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6863012	6863012	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100590.1	+1	validated	p.G301	0.001	53	0%	36	58.3%	6	33.3%	-	-	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6863933	6863933	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100590.1	+1	validated	p.G608	0.950	170	0%	86	18.6%	12	41.6%	-	-	-	NULL
TADA2B	93624	genome.wustl.edu	37	4	7056094	7056094	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152293.2	+1	validated	p.Y192	0.994	12	0%	19	52.6%	16	12.5%	-	-	-	NULL
PSAPL1	768239	genome.wustl.edu	37	4	7435284	7435284	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001085382.1	-1	validated	p.F441	0.329	44	0%	14	42.9%	0	-	-	-	-	HMMPfam_SapB_2,HMMSmart_SapB,superfamily_Saposin_like
SORCS2	57537	genome.wustl.edu	37	4	7668883	7668883	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000507866	+1	known	p.L335I	0.993	520	0%	151	44.4%	0	-	-	-	-	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
SORCS2	57537	genome.wustl.edu	37	4	7736057	7736057	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000507866	+1	known	p.R1056W	0.455	109	0%	46	54.3%	0	-	-	-	-	NULL
METTL19	152992	genome.wustl.edu	37	4	8477724	8477724	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152544.1	+1	provisional	p.S365*	0.000	33	0%	15	53.3%	21	47.6%	-	-	-	NULL
ENSG00000219492	0	genome.wustl.edu	37	4	9386178	9386178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508324	-1	known	p.L156I	0.000	161	0%	197	37.1%	0	-	possibly_damaging(0.473)	tolerated(0.33)	neutral(0.180)	superfamily_C2H2 and C2HC zinc fingers
DRD5	1816	genome.wustl.edu	37	4	9784597	9784597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000798.4	+1	reviewed	p.L315R	1.000	36	0%	36	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF518B	85460	genome.wustl.edu	37	4	10446851	10446851	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053042.2	-1	validated	p.E368*	1.000	90	0%	102	45.1%	15	73.3%	-	-	-	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10447097	10447097	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053042.2	-1	validated	p.K286Q	0.826	106	0%	147	41.5%	14	57.1%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
RAB28	9364	genome.wustl.edu	37	4	13383183	13383183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017979.2	-1	reviewed	p.K143Q	1.000	178	0%	77	36.4%	25	56%	benign(0.11)	tolerated(0.06)	neutral(0.331)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
BOD1L	259282	genome.wustl.edu	37	4	13578512	13578512	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000507943	-1	known	p.T105M	0.052	289	0.3%	119	40.3%	51	25.4%	-	-	-	NULL
BOD1L	259282	genome.wustl.edu	37	4	13602068	13602068	+	Silent	SNP	G	G	A	rs139854434	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148894.2	-1	validated	p.F2152	0.011	93	1.1%	28	50%	11	72.7%	-	-	-	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13603185	13603185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148894.2	-1	validated	p.S1780Y	0.013	232	0%	81	55.6%	23	43.4%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	superfamily_SSF81995
CC2D2A	57545	genome.wustl.edu	37	4	15581669	15581669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080522.2	+1	reviewed	p.R1284C	1.000	140	0%	76	38.2%	6	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FAM200B	285550	genome.wustl.edu	37	4	15689841	15689841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145191.1	+1	validated	p.S414Y	1.000	34	0%	37	59.5%	1	100%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
CD38	952	genome.wustl.edu	37	4	15841654	15841654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001775.2	+1	validated	p.F222S	0.968	625	0%	546	13.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like
ENSG00000251758	0	genome.wustl.edu	37	4	16010353	16010353	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000515949	-1	novel	NULL	0.000	18	0%	14	28.6%	0	-	-	-	-	-
TAPT1	202018	genome.wustl.edu	37	4	16188159	16188159	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000513782	-1	known	p.R98*	0.732	123	0%	146	37.7%	14	64.2%	-	-	-	HMMPfam_DUF747
DCAF16	54876	genome.wustl.edu	37	4	17805494	17805494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017741.3	-1	provisional	p.R91*	0.991	76	0%	93	47.3%	39	43.5%	-	-	-	NULL
LCORL	254251	genome.wustl.edu	37	4	17963530	17963530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153686.7	-1	reviewed	p.K142N	1.000	370	0%	68	33.8%	9	33.3%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
LCORL	254251	genome.wustl.edu	37	4	17974461	17974461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153686.7	-1	reviewed	p.D68Y	1.000	64	0%	26	65.4%	6	50%	unknown(0)	-	-	NULL
SLIT2	9353	genome.wustl.edu	37	4	20526788	20526788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004787.1	+1	provisional	p.F485L	1.000	492	0%	324	43.8%	1	0%	benign(0.041)	deleterious(0.05)	neutral(0.348)	superfamily_L domain-like
SLIT2	9353	genome.wustl.edu	37	4	20550744	20550744	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004787.1	+1	provisional	p.R828*	1.000	445	0%	99	43.4%	1	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PACRGL	133015	genome.wustl.edu	37	4	20714465	20714465	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145048.3	+1	validated	p.E141*	1.000	309	0%	82	43.9%	14	0%	-	-	-	HMMPfam_ParcG
GPR125	166647	genome.wustl.edu	37	4	22403157	22403157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145290.2	-1	validated	p.K793T	1.000	125	0%	43	37.2%	21	52.3%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_7tm_2
PPARGC1A	10891	genome.wustl.edu	37	4	23814438	23814438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013261.3	-1	reviewed	p.R651C	1.000	371	0%	69	49.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_RNA-binding domain RBD
PPARGC1A	10891	genome.wustl.edu	37	4	23814477	23814477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013261.3	-1	reviewed	p.E638K	1.000	306	0%	65	50.8%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
DHX15	1665	genome.wustl.edu	37	4	24538742	24538742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001358.2	-1	reviewed	p.K614R	1.000	279	0%	56	33.9%	187	41.7%	possibly_damaging(0.827)	tolerated(0.33)	neutral(0.338)	HMMPfam_HA2,superfamily_SSF52540
PI4K2B	55300	genome.wustl.edu	37	4	25258264	25258264	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018323.3	+1	validated	p.R242	0.999	71	0%	121	37.2%	20	65%	-	-	-	HMMPfam_PI3_PI4_kinase
ANAPC4	29945	genome.wustl.edu	37	4	25408837	25408837	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013367.2	+1	reviewed	p.R465*	1.000	130	0%	65	30.8%	12	16.6%	-	-	-	NULL
SLC34A2	10568	genome.wustl.edu	37	4	25673223	25673223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006424.2	+1	reviewed	p.T310A	0.995	283	0%	106	48.1%	8	75%	benign(0.045)	tolerated(0.39)	neutral(0.018)	NULL
SEL1L3	23231	genome.wustl.edu	37	4	25821558	25821558	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015187.3	-1	validated	p.F432C	0.917	122	0%	88	42%	51	50.9%	benign(0.296)	deleterious(0)	deleterious(0.536)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36134858	36134858	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015230.2	-1	reviewed	p.V1139	1.000	302	0%	40	62.5%	3	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARAP2	116984	genome.wustl.edu	37	4	36230520	36230520	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015230.2	-1	reviewed	p.E197*	0.000	99	0%	43	46.5%	2	0%	-	-	-	NULL
DTHD1	401124	genome.wustl.edu	37	4	36296580	36296580	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136536.3	+1	validated	p.K231T	0.948	303	0%	100	48%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
DTHD1	401124	genome.wustl.edu	37	4	36310064	36310064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136536.3	+1	validated	p.R392*	0.930	101	0%	61	41%	0	-	-	-	-	NULL
PGM2	55276	genome.wustl.edu	37	4	37850190	37850190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018290.3	+1	validated	p.A444T	1.000	327	0%	97	41.2%	40	52.5%	possibly_damaging(0.586)	deleterious(0.05)	deleterious(0.547)	superfamily_A-D-PHexomutase_a/b/a-I/II/III
TBC1D1	23216	genome.wustl.edu	37	4	38046004	38046004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015173.2	+1	validated	p.N479H	0.986	227	0%	193	43.5%	57	45.6%	possibly_damaging(0.524)	tolerated(0.54)	neutral(0.184)	NULL
TBC1D1	23216	genome.wustl.edu	37	4	38091653	38091653	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000510573	+1	known	p.S405T	0.000	61	0%	41	43.9%	65	38.4%	-	-	-	NULL
TLR10	81793	genome.wustl.edu	37	4	38776315	38776315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017388.1	-1	reviewed	p.M299I	0.986	164	0%	109	38.5%	0	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	superfamily_SSF52058
TLR10	81793	genome.wustl.edu	37	4	38776835	38776835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017388.1	-1	reviewed	p.F126C	1.000	62	0%	41	58.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_SSF52058
TLR1	7096	genome.wustl.edu	37	4	38798301	38798301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003263.3	-1	reviewed	p.L718I	0.984	151	0%	88	45.5%	2	50%	possibly_damaging(0.756)	deleterious(0.03)	deleterious(0.643)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
TLR6	10333	genome.wustl.edu	37	4	38828928	38828928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006068.3	-1	validated	p.L723I	0.877	130	0%	144	12.5%	0	-	probably_damaging(0.985)	tolerated(0.24)	deleterious(0.469)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
WDR19	57728	genome.wustl.edu	37	4	39236493	39236493	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025132.3	+1	reviewed	p.F787	1.000	156	0%	74	43.2%	16	50%	-	-	-	superfamily_TPR-like
RFC1	5981	genome.wustl.edu	37	4	39304177	39304177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002913.3	-1	reviewed	p.K793N	1.000	209	0%	131	52.7%	17	23.5%	possibly_damaging(0.493)	tolerated(0.12)	neutral(0.425)	superfamily_SSF52540
RFC1	5981	genome.wustl.edu	37	4	39318546	39318546	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002913.3	-1	reviewed	p.E398*	1.000	244	0%	200	43.5%	14	21.4%	-	-	-	NULL
KLB	152831	genome.wustl.edu	37	4	39436111	39436111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175737.3	+1	validated	p.F369L	1.000	202	0%	115	41.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
UGDH	7358	genome.wustl.edu	37	4	39523018	39523018	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003359.3	-1	reviewed	p.E39*	1.000	84	0%	74	39.2%	56	37.5%	-	-	-	HMMPfam_UDPG_MGDP_dh_N,superfamily_NAD(P)-bd
PDS5A	23244	genome.wustl.edu	37	4	39863945	39863945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100399.1	-1	reviewed	p.L994V	0.837	169	0%	56	50%	56	58.9%	benign(0)	tolerated(0.14)	neutral(0.249)	superfamily_ARM repeat
PDS5A	23244	genome.wustl.edu	37	4	39863948	39863948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100399.1	-1	reviewed	p.L993V	1.000	166	0%	54	44.4%	58	39.6%	possibly_damaging(0.773)	tolerated(0.42)	neutral(0.301)	superfamily_ARM repeat
PDS5A	23244	genome.wustl.edu	37	4	39905793	39905793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100399.1	-1	reviewed	p.A418T	1.000	71	0%	106	61.3%	27	48.1%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_HEAT,superfamily_ARM repeat
RBM47	54502	genome.wustl.edu	37	4	40438469	40438469	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098634.1	-1	validated	p.K440T	1.000	180	0%	180	36.7%	27	33.3%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ENSG00000207198	0	genome.wustl.edu	37	4	41116010	41116010	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384469	+1	novel	NULL	0.001	214	0%	148	48%	0	-	-	-	-	-
BEND4	389206	genome.wustl.edu	37	4	42122295	42122295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207406.3	-1	validated	p.L388S	1.000	81	0%	81	44.4%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
BEND4	389206	genome.wustl.edu	37	4	42145990	42145990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207406.3	-1	validated	p.A170V	1.000	74	0%	77	40.3%	1	0%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
ATP8A1	10396	genome.wustl.edu	37	4	42457333	42457333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006095.2	-1	reviewed	p.A933D	1.000	203	0%	95	53.7%	1	100%	possibly_damaging(0.949)	tolerated(0.52)	neutral(0.402)	NULL
GRXCR1	389207	genome.wustl.edu	37	4	42965093	42965093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080476.1	+1	provisional	p.R190Q	0.954	305	0%	30	50%	0	-	benign(0.374)	tolerated(0.61)	neutral(0.123)	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd
YIPF7	285525	genome.wustl.edu	37	4	44652021	44652021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182592.2	-1	validated	p.N57H	0.052	77	0%	82	58.5%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
GNPDA2	132789	genome.wustl.edu	37	4	44712972	44712972	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138335.1	-1	provisional	p.E198*	1.000	112	0%	36	47.2%	14	21.4%	-	-	-	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
GABRG1	2565	genome.wustl.edu	37	4	46053556	46053556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173536.3	-1	reviewed	p.V339A	1.000	297	0%	36	13.9%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA4	2557	genome.wustl.edu	37	4	46979629	46979629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000809.2	-1	reviewed	p.F98L	1.000	219	0%	57	38.6%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ATP10D	57205	genome.wustl.edu	37	4	47538493	47538493	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020453.3	+1	validated	p.F352Y	0.124	470	0.2%	173	33.5%	1	0%	possibly_damaging(0.446)	tolerated(1)	neutral(0.146)	HMMPfam_E1-E2_ATPase
ATP10D	57205	genome.wustl.edu	37	4	47563079	47563079	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020453.3	+1	validated	p.K885	0.999	201	0%	98	38.8%	2	0%	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
CORIN	10699	genome.wustl.edu	37	4	47667169	47667169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006587.2	-1	reviewed	p.E490V	1.000	136	0%	66	54.5%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Frizzled cysteine-rich domain,HMMPfam_Fz,HMMSmart_SM00063
NFXL1	152518	genome.wustl.edu	37	4	47907319	47907319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152995.4	-1	validated	p.E151*	1.000	250	0%	155	43.9%	3	33.3%	-	-	-	NULL
CNGA1	1259	genome.wustl.edu	37	4	47944159	47944159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142564.1	-1	reviewed	p.K221N	1.000	117	0%	89	39.3%	1	0%	possibly_damaging(0.801)	tolerated(0.09)	deleterious(0.598)	NULL
CNGA1	1259	genome.wustl.edu	37	4	47945230	47945230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142564.1	-1	reviewed	p.K208N	0.975	94	0%	224	42.4%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
CNGA1	1259	genome.wustl.edu	37	4	47953438	47953438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142564.1	-1	reviewed	p.E125D	0.181	210	0%	100	44%	0	-	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
TXK	7294	genome.wustl.edu	37	4	48096150	48096150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003328.2	-1	validated	p.R218I	1.000	338	0%	98	46.9%	3	66.6%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
TEC	7006	genome.wustl.edu	37	4	48172386	48172386	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000505452	-1	known	p.E98*	1.000	120	0%	82	41.5%	3	66.6%	-	-	-	NULL
ZAR1	326340	genome.wustl.edu	37	4	48495007	48495007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175619.1	+1	provisional	p.R370Q	0.996	107	0.9%	241	42.7%	10	70%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FRYL	285527	genome.wustl.edu	37	4	48542763	48542763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015030.1	-1	validated	p.N1968H	1.000	156	0.6%	44	40.9%	27	44.4%	possibly_damaging(0.76)	tolerated(0.31)	neutral(0.308)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48552602	48552602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000507711	-1	known	p.K1547T	0.000	115	0%	82	41.5%	0	-	unknown(0)	tolerated(0.38)	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48559609	48559609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015030.1	-1	validated	p.R1329Q	1.000	91	0%	81	51.9%	29	58.6%	probably_damaging(0.973)	tolerated(0.37)	neutral(0.434)	NULL
FRYL	285527	genome.wustl.edu	37	4	48597671	48597671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015030.1	-1	validated	p.R395Q	1.000	110	0.9%	41	48.8%	6	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM repeat
SGCB	6443	genome.wustl.edu	37	4	52895947	52895947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000232.4	-1	reviewed	p.R109Q	1.000	162	0%	94	40.4%	36	63.8%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Sarcoglycan_1
SPATA18	132671	genome.wustl.edu	37	4	52926626	52926626	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145263.2	+1	provisional	p.L43	0.998	130	0%	36	16.7%	4	0%	-	-	-	NULL
SPATA18	132671	genome.wustl.edu	37	4	52945043	52945043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145263.2	+1	provisional	p.S388Y	0.999	484	0%	182	46.7%	6	100%	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	NULL
LOC100288413	100288413	genome.wustl.edu	37	4	53611335	53611335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342451.1	-1	model	p.L118S	0.116	116	0%	90	47.8%	2	50%	-	-	-	NULL
SCFD2	152579	genome.wustl.edu	37	4	54179878	54179878	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152540.3	-1	validated	p.E354*	1.000	472	0%	96	44.8%	9	0%	-	-	-	superfamily_Sec1/munc18-like (SM) proteins
FIP1L1	81608	genome.wustl.edu	37	4	54319224	54319224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030917.3	+1	reviewed	p.R475W	0.990	242	0%	86	55.8%	100	42%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LNX1	84708	genome.wustl.edu	37	4	54342949	54342949	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001126328.1	-1	reviewed	p.P621	0.009	272	0%	68	39.7%	51	43.1%	-	-	-	superfamily_PDZ domain-like
LNX1	84708	genome.wustl.edu	37	4	54347959	54347959	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001126328.1	-1	reviewed	p.I471	1.000	60	0%	14	50%	33	51.5%	-	-	-	NULL
CHIC2	26511	genome.wustl.edu	37	4	54915446	54915446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012110.2	-1	reviewed	p.S49Y	1.000	103	0%	60	45%	29	48.2%	benign(0.186)	deleterious(0.02)	neutral(0.401)	HMMPfam_Erf4
CHIC2	26511	genome.wustl.edu	37	4	54930447	54930447	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000510894	-1	known	p.L7I	1.000	19	0%	16	62.5%	7	57.1%	-	-	-	NULL
GSX2	170825	genome.wustl.edu	37	4	54967876	54967876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133267.2	+1	validated	p.E234D	1.000	88	0%	76	46.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PDGFRA	5156	genome.wustl.edu	37	4	55133720	55133720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006206.4	+1	reviewed	p.E311D	1.000	92	0%	30	46.7%	3	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
KIT	3815	genome.wustl.edu	37	4	55573326	55573326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000222.2	+1	reviewed	p.N330D	0.846	117	0%	120	42.5%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	HMMSmart_IG,superfamily_SSF48726
KDR	3791	genome.wustl.edu	37	4	55976728	55976728	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002253.2	-1	reviewed	p.K366T	1.000	105	0%	51	35.3%	3	0%	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CLOCK	9575	genome.wustl.edu	37	4	56345848	56345848	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004898.2	-1	reviewed	p.F22	1.000	437	0%	145	42.8%	4	100%	-	-	-	NULL
PDCL2	132954	genome.wustl.edu	37	4	56428674	56428674	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152401.2	-1	reviewed	p.Y156	1.000	153	0%	98	36.7%	0	-	-	-	-	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
CEP135	9662	genome.wustl.edu	37	4	56818327	56818327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025009.3	+1	validated	p.N11H	1.000	41	0%	44	52.3%	2	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CEP135	9662	genome.wustl.edu	37	4	56823401	56823401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025009.3	+1	validated	p.R162I	1.000	200	0%	66	40.9%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CEP135	9662	genome.wustl.edu	37	4	56858128	56858128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025009.3	+1	validated	p.S629Y	1.000	47	0%	41	43.9%	1	100%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
CEP135	9662	genome.wustl.edu	37	4	56884001	56884001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025009.3	+1	validated	p.S997L	0.983	55	0%	34	50%	5	0%	possibly_damaging(0.659)	tolerated(0.31)	neutral(0.260)	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57179420	57179420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020722.1	+1	validated	p.E138K	1.000	144	0%	90	52.2%	16	43.7%	unknown(0)	deleterious(0)	-	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57181931	57181931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020722.1	+1	validated	p.E755K	0.002	85	0%	40	30%	27	55.5%	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	NULL
AASDH	132949	genome.wustl.edu	37	4	57219673	57219673	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181806.2	-1	validated	p.A491	0.016	77	0%	71	42.3%	2	50%	-	-	-	superfamily_Acetyl-CoA synthetase-like
SRP72	6731	genome.wustl.edu	37	4	57340275	57340275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006947.3	+1	validated	p.R137Q	1.000	160	0%	121	41.3%	87	48.2%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	superfamily_SSF48452
HOPX	84525	genome.wustl.edu	37	4	57514964	57514964	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145460.1	-1	reviewed	e4-1	1.000	35	0%	20	55%	0	-	-	-	-	-
HOPX	84525	genome.wustl.edu	37	4	57516883	57516883	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145460.1	-1	reviewed	p.F98	0.000	84	0%	60	40%	0	-	-	-	-	NULL
LOC644578	644578	genome.wustl.edu	37	4	64216397	64216397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_927694.2	+1	model	p.L244I	1.000	67	0%	67	35.8%	0	-	-	-	-	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
EPHA5	2044	genome.wustl.edu	37	4	66218787	66218787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004439.5	-1	reviewed	p.E757D	0.999	167	0%	41	39%	0	-	possibly_damaging(0.863)	deleterious(0)	deleterious(0.778)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
STAP1	26228	genome.wustl.edu	37	4	68472019	68472019	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012108.2	+1	reviewed	p.E278*	0.995	181	0%	121	41.3%	1	0%	-	-	-	NULL
UBA6	55236	genome.wustl.edu	37	4	68514788	68514788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018227.5	-1	validated	p.W416R	1.000	69	0%	86	43%	10	30%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_Activating enzymes of the ubiquitin-like proteins
UBA6	55236	genome.wustl.edu	37	4	68536260	68536260	+	Silent	SNP	G	G	A	rs140398587	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018227.5	-1	validated	p.F199	0.425	152	0.7%	142	50%	10	20%	-	-	-	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins
TMPRSS11F	389208	genome.wustl.edu	37	4	68934446	68934446	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207407.2	-1	validated	p.E215D	0.827	105	0%	15	26.7%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
TMPRSS11F	389208	genome.wustl.edu	37	4	68964699	68964699	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207407.2	-1	validated	p.Q23	0.892	108	0%	27	55.6%	0	-	-	-	-	NULL
UGT2B17	7367	genome.wustl.edu	37	4	69426320	69426320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077.3	-1	reviewed	p.I314V	1.000	592	0%	148	36.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B17	7367	genome.wustl.edu	37	4	69434027	69434027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077.3	-1	reviewed	p.S59L	0.005	143	0%	75	42.7%	0	-	possibly_damaging(0.656)	deleterious(0.01)	deleterious(0.637)	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B15	7366	genome.wustl.edu	37	4	69535816	69535816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076.2	-1	validated	p.R174Q	0.901	252	0%	104	49%	0	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69681867	69681867	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001075.4	+1	validated	p.E44*	0.456	148	0%	36	44.4%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B10	7365	genome.wustl.edu	37	4	69682379	69682379	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001075.4	+1	validated	p.L214	0.002	151	0%	59	37.3%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	69870835	69870835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000381096	-1	known	p.M443I	0.977	216	0%	45	40%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B7	7364	genome.wustl.edu	37	4	69962910	69962910	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001074.2	+1	validated	p.F224	0.000	197	0%	127	29.9%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B11	10720	genome.wustl.edu	37	4	70080027	70080027	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001073.1	-1	provisional	p.K138N	0.357	224	0%	49	14.3%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B11	10720	genome.wustl.edu	37	4	70080140	70080140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001073.1	-1	provisional	p.R101*	0.000	218	0%	68	10.3%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B28	54490	genome.wustl.edu	37	4	70160262	70160262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053039.1	+1	provisional	p.V442A	0.024	164	0%	26	30.8%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A2	574537	genome.wustl.edu	37	4	70504707	70504707	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105677.1	-1	inferred	p.R210	1.000	125	0%	25	56%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A2	574537	genome.wustl.edu	37	4	70505286	70505286	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105677.1	-1	inferred	p.E17*	0.000	202	0%	47	46.8%	0	-	-	-	-	NULL
UGT2A1	10941	genome.wustl.edu	37	4	70512737	70512737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006798.2	-1	validated	p.R209I	0.979	132	0%	30	36.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1E1	6783	genome.wustl.edu	37	4	70707773	70707773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005420.2	-1	reviewed	p.F275C	1.000	185	0%	186	45.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SULT1E1	6783	genome.wustl.edu	37	4	70715228	70715228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005420.2	-1	reviewed	p.F141L	0.053	68	0%	28	57.1%	0	-	benign(0.019)	deleterious(0.01)	neutral(0.407)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
FDCSP	260436	genome.wustl.edu	37	4	71099778	71099778	+	Silent	SNP	C	C	T	rs192079267	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152997.2	+1	validated	p.F44	0.006	207	0%	51	41.2%	2	0%	-	-	-	NULL
CSN3	1448	genome.wustl.edu	37	4	71115128	71115128	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005212.2	+1	validated	p.T167	0.000	88	0%	39	46.2%	0	-	-	-	-	HMMPfam_Casein_kappa
MUC7	4589	genome.wustl.edu	37	4	71347534	71347534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145006.1	+1	reviewed	p.R358Q	0.000	293	0%	128	26.6%	0	-	probably_damaging(0.982)	-	-	NULL
SLC4A4	8671	genome.wustl.edu	37	4	72306476	72306476	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134742.1	+1	reviewed	p.V317	0.940	231	0%	97	46.4%	2	100%	-	-	-	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
GC	2638	genome.wustl.edu	37	4	72611898	72611898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000583.2	-1	reviewed	p.L474M	0.000	68	0%	80	36.2%	0	-	benign(0.229)	deleterious(0)	neutral(0.468)	NULL
NPFFR2	10886	genome.wustl.edu	37	4	73013271	73013271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004885.2	+1	reviewed	p.F437L	1.000	104	0%	32	56.2%	0	-	benign(0.176)	tolerated(0.1)	neutral(0.302)	superfamily_Family A G protein-coupled receptor-like
ADAMTS3	9508	genome.wustl.edu	37	4	73185097	73185097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014243.1	-1	reviewed	p.R435H	1.000	97	0%	25	36%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS3	9508	genome.wustl.edu	37	4	73433106	73433106	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014243.1	-1	reviewed	p.E28*	1.000	133	0%	132	40.9%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
ANKRD17	26057	genome.wustl.edu	37	4	73985994	73985994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032217.3	-1	reviewed	p.L1304I	1.000	256	0%	66	36.4%	27	44.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD17	26057	genome.wustl.edu	37	4	74010527	74010527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032217.3	-1	reviewed	p.R631I	1.000	131	0%	62	54.8%	29	34.4%	possibly_damaging(0.874)	tolerated(0.09)	deleterious(0.636)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ALB	213	genome.wustl.edu	37	4	74272369	74272369	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000477.5	+1	reviewed	p.Y54F	0.994	404	0%	220	50%	0	-	benign(0.006)	tolerated(0.41)	neutral(0.015)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ALB	213	genome.wustl.edu	37	4	74279272	74279272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000477.5	+1	reviewed	p.P327S	0.000	154	0%	49	42.9%	0	-	benign(0.001)	tolerated(0.92)	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ALB	213	genome.wustl.edu	37	4	74281975	74281975	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000511370	+1	known	p.R243*	0.000	176	0%	125	38.4%	0	-	-	-	-	PatternScan_ALBUMIN,superfamily_Serum albumin-like
AFM	173	genome.wustl.edu	37	4	74349659	74349659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001133.2	+1	reviewed	p.E30D	0.100	58	0%	55	45.5%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
IL8	3576	genome.wustl.edu	37	4	74607378	74607378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000584.2	+1	reviewed	p.A62T	0.000	100	0%	45	51.1%	8	50%	benign(0.011)	tolerated(0.27)	neutral(0.034)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC
CXCL1	2919	genome.wustl.edu	37	4	74735635	74735635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001511.2	+1	validated	p.K79N	0.983	127	0%	99	45.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8,PatternScan_SMALL_CYTOKINES_CXC
MTHFD2L	441024	genome.wustl.edu	37	4	75040313	75040313	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144978.1	+1	provisional	p.G78	0.997	120	0%	44	43.2%	2	0%	-	-	-	HMMPfam_THF_DHG_CYH,superfamily_Aminoacid dehydrogenase-like N-terminal domain
MTHFD2L	441024	genome.wustl.edu	37	4	75147244	75147244	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144978.1	+1	provisional	p.L303*	0.995	231	0%	54	55.6%	3	33.3%	-	-	-	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-binding Rossmann-fold domains
BTC	685	genome.wustl.edu	37	4	75681098	75681098	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000512743	-1	known	p.S63L	1.000	320	0%	94	50%	2	50%	-	-	-	NULL
RCHY1	25898	genome.wustl.edu	37	4	76434118	76434118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015436.2	-1	reviewed	p.T80A	0.959	172	0%	64	42.2%	28	39.2%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-CHY
THAP6	152815	genome.wustl.edu	37	4	76452207	76452207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144721.4	+1	validated	p.L151R	1.000	74	0%	68	51.5%	5	80%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
THAP6	152815	genome.wustl.edu	37	4	76452235	76452235	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144721.4	+1	validated	p.G160	1.000	93	0%	89	36%	5	40%	-	-	-	NULL
CDKL2	8999	genome.wustl.edu	37	4	76523348	76523348	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003948.3	-1	reviewed	p.V311	0.996	38	0%	95	48.4%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
CDKL2	8999	genome.wustl.edu	37	4	76532519	76532519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003948.3	-1	reviewed	p.E130D	0.998	80	0%	78	44.9%	0	-	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
USO1	8615	genome.wustl.edu	37	4	76695903	76695903	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003715.2	+1	reviewed	p.R171*	1.000	101	0%	89	47.2%	36	55.5%	-	-	-	NULL
PPEF2	5470	genome.wustl.edu	37	4	76787372	76787372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006239.2	-1	reviewed	p.K630N	0.101	340	0%	120	39.2%	0	-	benign(0.025)	tolerated(0.07)	neutral(0.320)	superfamily_Metallo-dependent phosphatases
SDAD1	55153	genome.wustl.edu	37	4	76886947	76886947	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018115.2	-1	validated	p.A358	0.994	193	0%	63	34.9%	33	39.3%	-	-	-	superfamily_ARM repeat
CXCL10	3627	genome.wustl.edu	37	4	76943548	76943548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001565.2	-1	reviewed	p.K83N	0.956	384	0%	158	13.9%	35	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
NUP54	53371	genome.wustl.edu	37	4	77057388	77057388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017426.2	-1	reviewed	p.N158T	1.000	123	0%	94	43.6%	18	44.4%	benign(0.003)	tolerated(0.68)	neutral(0.002)	NULL
CCDC158	339965	genome.wustl.edu	37	4	77305285	77305285	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042784.1	-1	validated	p.E228*	1.000	98	0%	63	38.1%	0	-	-	-	-	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77661801	77661801	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020859.3	+1	validated	p.F825	0.000	23	0%	27	22.2%	10	60%	-	-	-	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77700114	77700114	+	Silent	SNP	G	G	T	rs187465619	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020859.3	+1	validated	p.V1925	1.000	123	0%	32	46.9%	38	31.5%	-	-	-	HMMPfam_ASD2
GK2	2712	genome.wustl.edu	37	4	80329176	80329176	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033214.2	-1	validated	p.I60S	1.000	371	0%	209	41.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGGY_N,superfamily_SSF53067
ANTXR2	118429	genome.wustl.edu	37	4	80940126	80940126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145794.1	-1	reviewed	p.L291I	1.000	109	0%	83	34.9%	3	33.3%	benign(0.008)	tolerated(0.61)	neutral(0.004)	HMMPfam_Anth_Ig
LIN54	132660	genome.wustl.edu	37	4	83860829	83860829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194282.2	-1	validated	p.R435W	1.000	538	0%	163	51.5%	5	60%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
HPSE	10855	genome.wustl.edu	37	4	84222231	84222231	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098540.1	-1	validated	p.L452	0.997	202	0%	132	37.1%	1	0%	-	-	-	NULL
HPSE	10855	genome.wustl.edu	37	4	84227368	84227368	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098540.1	-1	validated	p.F398	0.361	263	0%	91	48.4%	1	100%	-	-	-	superfamily_(Trans)glycosidases
HPSE	10855	genome.wustl.edu	37	4	84232011	84232011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098540.1	-1	validated	p.F236V	1.000	121	0%	110	44.5%	0	-	benign(0.03)	tolerated(0.49)	neutral(0.012)	HMMPfam_Glyco_hydro_79n,superfamily_(Trans)glycosidases
HPSE	10855	genome.wustl.edu	37	4	84240580	84240580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098540.1	-1	validated	p.K139R	0.000	252	0%	275	44.7%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_Glyco_hydro_79n,superfamily_(Trans)glycosidases
HELQ	113510	genome.wustl.edu	37	4	84339284	84339284	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133636.2	-1	validated	p.E1009*	1.000	93	0%	119	12.6%	5	0%	-	-	-	NULL
HELQ	113510	genome.wustl.edu	37	4	84350853	84350853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133636.2	-1	validated	p.F781C	1.000	126	0%	106	50%	3	33.3%	possibly_damaging(0.719)	deleterious(0)	deleterious(0.705)	NULL
HELQ	113510	genome.wustl.edu	37	4	84358098	84358098	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133636.2	-1	validated	p.L654R	0.900	221	0%	140	40.7%	3	66.6%	benign(0.369)	deleterious(0.01)	deleterious(0.523)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
HELQ	113510	genome.wustl.edu	37	4	84369974	84369974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133636.2	-1	validated	p.L385V	1.000	85	0%	99	50.5%	1	0%	possibly_damaging(0.849)	tolerated(0.91)	neutral(0.326)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM175A	84142	genome.wustl.edu	37	4	84393378	84393378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139076.2	-1	validated	p.K93N	1.000	60	0%	133	19.5%	8	50%	possibly_damaging(0.753)	deleterious(0.03)	deleterious(0.641)	NULL
CDS1	1040	genome.wustl.edu	37	4	85538809	85538809	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001263.3	+1	reviewed	p.L145	0.021	222	0%	135	49.6%	13	53.8%	-	-	-	HMMPfam_CTP_transf_1
WDFY3	23001	genome.wustl.edu	37	4	85699690	85699690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014991.4	-1	reviewed	p.S1495*	1.000	287	0%	62	38.7%	4	25%	-	-	-	NULL
PTPN13	5783	genome.wustl.edu	37	4	87655927	87655927	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080685.2	+1	reviewed	p.R684*	1.000	283	0%	71	36.6%	2	0%	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
SLC10A6	345274	genome.wustl.edu	37	4	87770102	87770102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_197965.2	-1	validated	p.R56Q	0.000	39	0%	23	69.6%	0	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_SBF
AFF1	4299	genome.wustl.edu	37	4	88036213	88036213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005935.2	+1	validated	p.K736R	0.001	80	0%	27	44.4%	4	0%	unknown(0)	tolerated(1)	-	HMMPfam_AF-4
KLHL8	57563	genome.wustl.edu	37	4	88084715	88084715	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020803.3	-1	validated	p.R607*	1.000	194	0%	108	46.3%	5	100%	-	-	-	NULL
KLHL8	57563	genome.wustl.edu	37	4	88091294	88091294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020803.3	-1	validated	p.E492*	1.000	224	0%	69	27.5%	10	10%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL8	57563	genome.wustl.edu	37	4	88106885	88106885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020803.3	-1	validated	p.M95L	1.000	67	1.5%	25	40%	3	33.3%	possibly_damaging(0.754)	deleterious(0)	deleterious(0.723)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
SPARCL1	8404	genome.wustl.edu	37	4	88415319	88415319	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128310.1	-1	validated	p.V211	0.001	451	0%	238	46.6%	31	0%	-	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88534064	88534064	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014208.3	+1	reviewed	p.S242	0.135	253	0%	133	46.6%	0	-	-	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88536645	88536645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014208.3	+1	reviewed	p.S944N	0.996	941	0.2%	188	42.6%	0	-	unknown(0)	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88537398	88537398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014208.3	+1	reviewed	p.S1195I	0.306	724	0.3%	119	40.3%	0	-	unknown(0)	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88537488	88537488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014208.3	+1	reviewed	p.S1225N	1.000	659	0%	105	41%	0	-	unknown(0)	-	-	NULL
DMP1	1758	genome.wustl.edu	37	4	88583651	88583651	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004407.3	+1	reviewed	p.E241*	0.024	137	0%	26	46.2%	0	-	-	-	-	HMMPfam_DMP1
IBSP	3381	genome.wustl.edu	37	4	88732557	88732557	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004967.3	+1	reviewed	p.D150G	0.984	245	0%	67	46.3%	0	-	possibly_damaging(0.798)	deleterious(0.01)	deleterious(0.706)	HMMPfam_BSP_II
MEPE	56955	genome.wustl.edu	37	4	88767456	88767456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020203.3	+1	validated	p.S479Y	0.000	48	0%	21	23.8%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
ABCG2	9429	genome.wustl.edu	37	4	89034656	89034656	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004827.2	-1	reviewed	p.K331N	0.070	200	0%	163	38.7%	0	-	benign(0.002)	tolerated(0.39)	neutral(0.016)	NULL
ABCG2	9429	genome.wustl.edu	37	4	89052262	89052262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004827.2	-1	reviewed	p.I161S	0.996	797	0%	134	47%	1	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPM1K	152926	genome.wustl.edu	37	4	89199550	89199550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152542.3	-1	validated	p.D62E	1.000	170	0%	66	51.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HERC6	55008	genome.wustl.edu	37	4	89363508	89363508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017912.3	+1	validated	p.L989I	0.080	196	0%	66	22.7%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC5	51191	genome.wustl.edu	37	4	89397029	89397029	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016323.2	+1	reviewed	p.L477R	0.060	109	0%	202	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HERC3	8916	genome.wustl.edu	37	4	89601316	89601316	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014606.1	+1	provisional	p.E757*	1.000	189	0%	118	44.9%	5	40%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
FAM13A	10144	genome.wustl.edu	37	4	89652526	89652526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014883.2	-1	validated	p.R966Q	1.000	50	0%	39	46.2%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89859188	89859188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000509094	-1	known	p.K270N	0.000	43	0%	40	50%	0	-	benign(0.008)	-	-	NULL
FAM13A	10144	genome.wustl.edu	37	4	89859189	89859189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000509094	-1	known	p.K270T	0.000	43	0%	39	48.7%	0	-	benign(0)	-	-	NULL
TIGD2	166815	genome.wustl.edu	37	4	90034798	90034798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145715.2	+1	reviewed	p.L225I	1.000	42	0%	62	14.5%	13	7.6%	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_DDE
TMSB4XP8	7117	genome.wustl.edu	37	4	91760064	91760064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183049.2	-1	validated	p.G42D	0.998	43	0%	24	29.2%	5208	0%	benign(0.001)	-	-	HMMPfam_Thymosin,HMMSmart_THY
GRID2	2895	genome.wustl.edu	37	4	94159636	94159636	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001510.2	+1	validated	p.R414*	1.000	132	0%	21	52.4%	0	-	-	-	-	superfamily_SSF53822
GRID2	2895	genome.wustl.edu	37	4	94376978	94376978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001510.2	+1	validated	p.A571T	1.000	361	0%	72	29.2%	0	-	probably_damaging(0.966)	tolerated(0.08)	deleterious(0.708)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
BMPR1B	658	genome.wustl.edu	37	4	96073798	96073798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001203.2	+1	reviewed	p.I419M	0.438	97	0%	31	48.4%	12	58.3%	benign(0.015)	deleterious(0.03)	neutral(0.365)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UNC5C	8633	genome.wustl.edu	37	4	96123919	96123919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003728.2	-1	reviewed	p.R700Q	1.000	158	0%	44	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UNC5C	8633	genome.wustl.edu	37	4	96140360	96140360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003728.2	-1	reviewed	p.P469S	1.000	473	0%	107	34.6%	0	-	probably_damaging(0.998)	tolerated(0.37)	deleterious(0.493)	NULL
PDHA2	5161	genome.wustl.edu	37	4	96761547	96761547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005390.4	+1	validated	p.Q82H	1.000	100	0%	43	51.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_E1_dh,superfamily_SSF52518
PDHA2	5161	genome.wustl.edu	37	4	96761743	96761743	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005390.4	+1	validated	p.G148*	1.000	131	0%	66	36.4%	0	-	-	-	-	HMMPfam_E1_dh,superfamily_SSF52518
PDHA2	5161	genome.wustl.edu	37	4	96762427	96762427	+	Missense_Mutation	SNP	C	C	T	rs17024795	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005390.4	+1	validated	p.R376C	1.000	126	0%	36	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52518
C4orf37	285555	genome.wustl.edu	37	4	98865070	98865070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174952.2	-1	validated	p.R341I	0.008	164	0%	52	9.6%	0	-	benign(0.031)	deleterious(0.01)	neutral(0.407)	NULL
C4orf37	285555	genome.wustl.edu	37	4	98902465	98902465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174952.2	-1	validated	p.F206C	1.000	411	0%	130	56.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TSPAN5	10098	genome.wustl.edu	37	4	99399860	99399860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005723.3	-1	reviewed	p.F184L	0.997	148	0%	81	43.2%	12	0%	benign(0.004)	tolerated(0.39)	neutral(0.016)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
ADH5	128	genome.wustl.edu	37	4	99997954	99997954	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000671.3	-1	reviewed	p.I155	1.000	106	0%	69	15.9%	262	6.4%	-	-	-	superfamily_GroES-like,HMMPfam_ADH_N
ADH1C	126	genome.wustl.edu	37	4	100260758	100260758	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000669.3	-1	reviewed	p.F360C	1.000	120	0%	101	42.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GroES-like
ADH1C	126	genome.wustl.edu	37	4	100266091	100266091	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000669.3	-1	reviewed	p.S165	0.544	167	0.6%	45	35.6%	1	100%	-	-	-	superfamily_GroES-like
ADH7	131	genome.wustl.edu	37	4	100349052	100349052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000673.4	-1	reviewed	p.E160K	1.000	319	0%	50	32%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_GroES_like,HMMPfam_ADH_N
EMCN	51705	genome.wustl.edu	37	4	101344505	101344505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016242.3	-1	validated	p.P158T	0.000	502	0%	72	41.7%	0	-	benign(0.15)	tolerated(0.12)	neutral(0.274)	HMMPfam_Endomucin
SLC39A8	64116	genome.wustl.edu	37	4	103228665	103228665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135146.1	-1	reviewed	p.K160N	1.000	170	0%	51	58.8%	18	55.5%	possibly_damaging(0.76)	tolerated(0.15)	deleterious(0.522)	HMMPfam_Zip
SLC9B1	150159	genome.wustl.edu	37	4	103831601	103831601	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139173.2	-1	reviewed	p.E361*	0.949	29	0%	25	48%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
SLC9B2	133308	genome.wustl.edu	37	4	103949935	103949935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178833.4	-1	validated	p.S454Y	1.000	58	0%	18	38.9%	3	33.3%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_Na_H_Exchanger
SLC9B2	133308	genome.wustl.edu	37	4	103988745	103988745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508136	-1	known	p.S104L	0.002	186	0%	99	43.4%	3	33.3%	benign(0.122)	deleterious(0.01)	neutral(0.416)	superfamily_NAD(P)-binding Rossmann-fold domains
BDH2	56898	genome.wustl.edu	37	4	104003252	104003252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020139.3	-1	validated	p.L224V	0.672	233	0%	90	51.1%	92	38%	benign(0.168)	deleterious(0)	neutral(0.460)	superfamily_NAD(P)-binding Rossmann-fold domains
CENPE	1062	genome.wustl.edu	37	4	104029996	104029996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001813.2	-1	validated	p.R2659C	0.386	309	0%	124	34.7%	32	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CENPE	1062	genome.wustl.edu	37	4	104070372	104070372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001813.2	-1	validated	p.S1197Y	0.011	195	0%	129	38.8%	4	50%	possibly_damaging(0.952)	tolerated(0.92)	neutral(0.396)	NULL
TET2	54790	genome.wustl.edu	37	4	106155474	106155474	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127208.1	+1	validated	p.F125	0.917	120	0%	28	42.9%	1	0%	-	-	-	NULL
TET2	54790	genome.wustl.edu	37	4	106156071	106156071	+	Missense_Mutation	SNP	A	A	C	rs35215495	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127208.1	+1	validated	p.Q324H	0.001	258	0%	58	53.4%	4	50%	possibly_damaging(0.437)	deleterious(0)	deleterious(0.587)	NULL
TET2	54790	genome.wustl.edu	37	4	106157375	106157375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127208.1	+1	validated	p.T759N	0.594	102	0%	68	33.8%	5	60%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
TET2	54790	genome.wustl.edu	37	4	106157540	106157540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127208.1	+1	validated	p.R814H	0.225	71	0%	45	46.7%	3	0%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
TET2	54790	genome.wustl.edu	37	4	106157965	106157965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127208.1	+1	validated	p.L956I	1.000	106	0%	26	50%	5	60%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TET2	54790	genome.wustl.edu	37	4	106196632	106196632	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127208.1	+1	validated	p.P1655	0.346	259	0%	56	46.4%	7	28.5%	-	-	-	NULL
PPA2	27068	genome.wustl.edu	37	4	106320208	106320208	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176869.2	-1	reviewed	p.E257*	1.000	182	0%	96	42.7%	49	2%	-	-	-	HMMPfam_Pyrophosphatase,superfamily_Inorganic pyrophosphatase
ARHGEF38	54848	genome.wustl.edu	37	4	106552100	106552100	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017700.1	+1	validated	p.K185T	1.000	165	0%	72	40.3%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_RhoGEF,superfamily_DH-domain
INTS12	57117	genome.wustl.edu	37	4	106614540	106614540	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142471.1	-1	validated	p.L138*	0.984	472	0%	141	42.6%	14	21.4%	-	-	-	NULL
TBCK	93627	genome.wustl.edu	37	4	107157567	107157567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033115.3	-1	validated	p.L381I	1.000	104	0%	30	36.7%	4	50%	possibly_damaging(0.896)	deleterious(0.01)	deleterious(0.759)	superfamily_RabGAP_TBC
LEF1	51176	genome.wustl.edu	37	4	109088804	109088804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016269.4	-1	reviewed	p.E40D	1.000	55	0%	66	43.9%	81	41.9%	probably_damaging(0.974)	tolerated(0.14)	deleterious(0.665)	HMMPfam_CTNNB1_binding
AGXT2L1	64850	genome.wustl.edu	37	4	109672126	109672126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031279.3	-1	validated	p.I223L	1.000	113	0%	69	50.7%	0	-	benign(0.004)	tolerated(0.63)	neutral(0.004)	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
AGXT2L1	64850	genome.wustl.edu	37	4	109680977	109680977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031279.3	-1	validated	p.I88T	1.000	166	0%	125	44%	0	-	benign(0.408)	deleterious(0.01)	deleterious(0.538)	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
SEC24B	10427	genome.wustl.edu	37	4	110445982	110445982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006323.2	+1	reviewed	p.Q839H	0.310	139	0%	162	39.5%	17	35.2%	benign(0.002)	tolerated(0.26)	neutral(0.034)	HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24
GAR1	54433	genome.wustl.edu	37	4	110740179	110740179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018983.3	+1	reviewed	p.E131G	1.000	201	0%	174	42%	37	43.2%	possibly_damaging(0.839)	deleterious(0.01)	deleterious(0.726)	HMMPfam_Gar1
LRIT3	345193	genome.wustl.edu	37	4	110772982	110772982	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198506.2	+1	validated	p.E102*	0.998	138	0%	38	44.7%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRIT3	345193	genome.wustl.edu	37	4	110773055	110773055	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198506.2	+1	validated	p.D126A	1.000	92	0%	23	43.5%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRIT3	345193	genome.wustl.edu	37	4	110790809	110790809	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198506.2	+1	validated	p.E257*	1.000	159	0%	77	40.3%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
EGF	1950	genome.wustl.edu	37	4	110932475	110932475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001963.4	+1	reviewed	p.R1163Q	0.000	42	0%	19	36.8%	0	-	benign(0.005)	tolerated(0.33)	neutral(0.024)	NULL
ENPEP	2028	genome.wustl.edu	37	4	111430812	111430812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001977.3	+1	validated	p.K348T	1.000	146	0%	116	40.5%	0	-	possibly_damaging(0.487)	deleterious(0.04)	deleterious(0.511)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
ALPK1	80216	genome.wustl.edu	37	4	113345108	113345108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102406.1	+1	validated	p.L162V	0.096	327	0%	97	39.2%	4	50%	possibly_damaging(0.83)	tolerated(0.19)	neutral(0.365)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113352013	113352013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102406.1	+1	validated	p.F437S	0.999	195	0%	77	46.8%	4	50%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113352752	113352752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102406.1	+1	validated	p.F683L	0.000	95	0%	31	35.5%	1	0%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
C4orf21	55345	genome.wustl.edu	37	4	113482133	113482133	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000505019	-1	known	p.V1572	0.000	266	0.4%	240	46.3%	1	0%	-	-	-	NULL
C4orf21	55345	genome.wustl.edu	37	4	113508527	113508527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000505019	-1	known	p.S1229F	0.031	187	0%	58	37.9%	0	-	benign(0.055)	deleterious(0)	neutral(0.448)	NULL
C4orf21	55345	genome.wustl.edu	37	4	113539642	113539642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000505019	-1	known	p.S519Y	0.000	181	0%	144	40.3%	2	50%	possibly_damaging(0.745)	deleterious(0.02)	deleterious(0.657)	NULL
ANK2	287	genome.wustl.edu	37	4	114277614	114277614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001148.4	+1	reviewed	p.E2614*	0.933	244	0%	52	13.5%	0	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114278087	114278087	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001148.4	+1	reviewed	p.I2771	0.100	112	0%	23	56.5%	0	-	-	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114278656	114278656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001148.4	+1	reviewed	p.S2961Y	0.996	237	0%	65	35.4%	0	-	benign(0.019)	-	-	NULL
NDST4	64579	genome.wustl.edu	37	4	115769406	115769406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022569.1	-1	provisional	p.F635L	1.000	277	0%	325	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
TRAM1L1	133022	genome.wustl.edu	37	4	118005617	118005617	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152402.2	-1	validated	p.V311	0.194	154	0%	162	45.7%	9	55.5%	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
METTL14	57721	genome.wustl.edu	37	4	119618401	119618401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020961.2	+1	provisional	p.L190I	1.000	67	0%	100	15%	11	9%	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	HMMPfam_MT-A70
SEC24D	9871	genome.wustl.edu	37	4	119673896	119673896	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014822.2	-1	reviewed	p.D523E	1.000	146	0%	48	31.2%	40	47.5%	probably_damaging(0.964)	tolerated(0.1)	deleterious(0.693)	HMMPfam_Sec23_trunk,superfamily_vWA-like
SEC24D	9871	genome.wustl.edu	37	4	119745899	119745899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014822.2	-1	reviewed	p.M42V	0.999	15	0.000	9	0.444	23	26%	benign(0.031)	tolerated(0.35)	neutral(0.022)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119951207	119951207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133477.2	+1	validated	p.E426G	0.836	350	0%	108	51.9%	4	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119951718	119951718	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000504178	+1	known	p.E548*	0.015	86	0%	42	11.9%	2	0%	-	-	-	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119952399	119952399	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000504178	+1	known	p.R775C	0.022	151	0%	73	37%	1	0%	-	-	-	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119952400	119952400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133477.2	+1	validated	p.V824M	0.226	149	0%	71	53.5%	1	0%	benign(0.313)	tolerated(0.09)	neutral(0.394)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119952980	119952980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133477.2	+1	validated	p.T1017M	0.048	110	0%	49	30.6%	2	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
USP53	54532	genome.wustl.edu	37	4	120193173	120193173	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019050.2	+1	validated	p.E720*	0.986	31	0%	40	52.5%	12	8.3%	-	-	-	NULL
C4orf3	401152	genome.wustl.edu	37	4	120225513	120225513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000399075	-1	known	p.Y30H	0.004	463	0.2%	278	46%	0	-	possibly_damaging(0.819)	-	-	NULL
PDE5A	8654	genome.wustl.edu	37	4	120446754	120446754	+	Missense_Mutation	SNP	G	G	A	rs182361575	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083.3	-1	reviewed	p.R577W	1.000	143	0%	28	39.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HD-domain/PDEase-like
PRDM5	11107	genome.wustl.edu	37	4	121739566	121739566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018699.2	-1	reviewed	p.E198*	1.000	167	0%	94	51.1%	2	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NDNF	79625	genome.wustl.edu	37	4	121958349	121958349	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024574.3	-1	validated	p.S259	0.000	247	0%	64	45.3%	1	100%	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
NDNF	79625	genome.wustl.edu	37	4	121966889	121966889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024574.3	-1	validated	p.R35Q	1.000	56	0%	58	44.8%	0	-	benign(0.069)	deleterious(0.03)	neutral(0.369)	NULL
TNIP3	79931	genome.wustl.edu	37	4	122075787	122075787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128843.1	-1	validated	p.E137D	0.997	356	0%	340	38.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
QRFPR	84109	genome.wustl.edu	37	4	122251587	122251587	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198179.2	-1	validated	p.E297*	0.999	169	0%	47	46.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
QRFPR	84109	genome.wustl.edu	37	4	122254041	122254041	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198179.2	-1	validated	p.K244N	1.000	237	0%	82	52.4%	0	-	possibly_damaging(0.461)	tolerated(0.11)	neutral(0.422)	HMMPfam_7tm_1,superfamily_SSF81321
EXOSC9	5393	genome.wustl.edu	37	4	122722639	122722639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001034194.1	+1	validated	p.E20D	1.000	34	0%	32	43.8%	29	37.9%	benign(0.037)	tolerated(0.12)	neutral(0.263)	NULL
CCNA2	890	genome.wustl.edu	37	4	122743561	122743561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001237.3	-1	validated	p.F152V	1.000	119	0%	152	50.7%	33	48.4%	benign(0.005)	tolerated(0.54)	neutral(0.007)	NULL
BBS7	55212	genome.wustl.edu	37	4	122747030	122747030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176824.1	-1	reviewed	p.F711L	1.000	151	0.7%	200	52.5%	3	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
BBS7	55212	genome.wustl.edu	37	4	122756435	122756435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176824.1	-1	reviewed	p.R459C	1.000	442	0%	140	45%	10	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122824086	122824086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130698.1	-1	validated	p.R795Q	1.000	297	0%	65	41.5%	0	-	benign(0.378)	tolerated(0.41)	neutral(0.136)	NULL
TRPC3	7222	genome.wustl.edu	37	4	122825576	122825576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130698.1	-1	validated	p.N718K	1.000	183	0%	53	41.5%	0	-	possibly_damaging(0.68)	deleterious(0.02)	deleterious(0.625)	HMMPfam_Ion_trans
KIAA1109	84162	genome.wustl.edu	37	4	123156170	123156170	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015312.3	+1	reviewed	p.I1189S	0.875	82	0%	118	35.6%	1	0%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123170766	123170766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015312.3	+1	reviewed	p.R1880Q	1.000	202	0%	60	46.7%	2	100%	possibly_damaging(0.942)	tolerated(0.18)	neutral(0.443)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123175371	123175371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015312.3	+1	reviewed	p.D1982Y	1.000	156	0%	87	43.7%	5	40%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123207750	123207750	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015312.3	+1	reviewed	p.S3031*	1.000	266	0%	90	10%	10	0%	-	-	-	NULL
ADAD1	132612	genome.wustl.edu	37	4	123305067	123305067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139243.3	+1	validated	p.L159F	1.000	216	0%	108	41.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
BBS12	166379	genome.wustl.edu	37	4	123664678	123664678	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152618.2	+1	reviewed	p.F544C	0.895	199	0%	164	44.5%	10	90%	possibly_damaging(0.941)	deleterious(0.01)	deleterious(0.792)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
SPATA5	166378	genome.wustl.edu	37	4	123848905	123848905	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145207.2	+1	validated	p.K94Q	1.000	131	0%	120	51.7%	6	33.3%	benign(0.057)	deleterious(0.02)	neutral(0.387)	superfamily_ADC-like
FAT4	79633	genome.wustl.edu	37	4	126240278	126240278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024582.4	+1	validated	p.E904D	1.000	68	0%	51	41.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126370496	126370496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024582.4	+1	validated	p.Q2775H	0.747	38	0%	25	40%	1	0%	benign(0.422)	tolerated(0.08)	neutral(0.437)	superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126370701	126370701	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024582.4	+1	validated	p.R2844*	1.000	62	0%	26	42.3%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126371731	126371731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024582.4	+1	validated	p.V3187A	1.000	42	0%	14	42.9%	7	14.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126372690	126372690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024582.4	+1	validated	p.G3507R	1.000	98	0%	38	52.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126373570	126373570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024582.4	+1	validated	p.S3800Y	0.908	99	0%	27	37%	4	50%	possibly_damaging(0.931)	tolerated(0.55)	neutral(0.385)	superfamily_EGF/Laminin
FAT4	79633	genome.wustl.edu	37	4	126398357	126398357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024582.4	+1	validated	p.S4114Y	0.983	159	0.6%	88	40.9%	4	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
INTU	27152	genome.wustl.edu	37	4	128590286	128590286	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015693.3	+1	validated	p.N356	1.000	160	0%	50	42%	3	66.6%	-	-	-	NULL
SLC25A31	83447	genome.wustl.edu	37	4	128651923	128651923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031291.2	+1	validated	p.R75C	0.016	21	0.000	9	0.444	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
HSPA4L	22824	genome.wustl.edu	37	4	128743961	128743961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014278.2	+1	provisional	p.R617I	1.000	92	0%	58	43.1%	9	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_HSP70,superfamily_SSF100920
PLK4	10733	genome.wustl.edu	37	4	128807454	128807454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014264.3	+1	reviewed	p.R310I	1.000	42	0%	90	42.2%	12	50%	possibly_damaging(0.878)	tolerated(0.12)	deleterious(0.603)	superfamily_Kinase_like
PHF17	79960	genome.wustl.edu	37	4	129793345	129793345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199320.2	+1	validated	p.K819N	0.830	82	0%	26	46.2%	24	41.6%	probably_damaging(0.978)	tolerated(0.68)	neutral(0.422)	NULL
PABPC4L	132430	genome.wustl.edu	37	4	135121430	135121430	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114734.1	-1	validated	p.E249*	0.834	120	0%	101	11.9%	5	20%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PCDH18	54510	genome.wustl.edu	37	4	138450798	138450798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019035.3	-1	reviewed	p.E815D	1.000	232	0%	42	45.2%	11	36.3%	probably_damaging(0.996)	tolerated(0.4)	deleterious(0.478)	NULL
PCDH18	54510	genome.wustl.edu	37	4	138452077	138452077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019035.3	-1	reviewed	p.S389Y	1.000	118	0%	53	41.5%	8	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SLC7A11	23657	genome.wustl.edu	37	4	139106302	139106302	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014331.3	-1	validated	p.E296	0.989	128	0%	20	50%	1	100%	-	-	-	HMMPfam_AA_permease
SLC7A11	23657	genome.wustl.edu	37	4	139140480	139140480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014331.3	-1	validated	p.D229G	1.000	148	0%	66	45.5%	1	0%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_AA_permease
NAA15	80155	genome.wustl.edu	37	4	140306065	140306065	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_057175.3	+1	validated	p.T745	0.076	75	0%	59	39%	18	44.4%	-	-	-	NULL
SETD7	80854	genome.wustl.edu	37	4	140441447	140441447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030648.2	-1	validated	p.R249Q	1.000	115	0%	114	49.1%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MAML3	55534	genome.wustl.edu	37	4	141074206	141074206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018717.4	-1	validated	p.E92D	1.000	60	0%	21	33.3%	4	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_MamL-1
INPP4B	8821	genome.wustl.edu	37	4	143007359	143007359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001101669.1	-1	reviewed	p.L809I	1.000	122	0%	42	38.1%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
INPP4B	8821	genome.wustl.edu	37	4	143067025	143067025	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001101669.1	-1	reviewed	p.S563*	0.001	463	0%	64	40.6%	0	-	-	-	-	NULL
INPP4B	8821	genome.wustl.edu	37	4	143130163	143130163	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001101669.1	-1	reviewed	p.E285*	1.000	126	0%	80	41.2%	0	-	-	-	-	NULL
INPP4B	8821	genome.wustl.edu	37	4	143159104	143159104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001101669.1	-1	reviewed	p.R250Q	0.945	84	0%	48	41.7%	0	-	benign(0.014)	tolerated(0.18)	neutral(0.057)	NULL
USP38	84640	genome.wustl.edu	37	4	144130761	144130761	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032557.5	+1	validated	p.S483*	1.000	98	0%	41	34.1%	6	66.6%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
GAB1	2549	genome.wustl.edu	37	4	144336738	144336738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207123.2	+1	reviewed	p.D61Y	1.000	211	0%	132	42.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SMARCA5	8467	genome.wustl.edu	37	4	144445525	144445525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003601.2	+1	reviewed	p.R142Q	1.000	82	0%	71	39.4%	36	47.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52540
SMARCA5	8467	genome.wustl.edu	37	4	144467954	144467954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003601.2	+1	reviewed	p.D849A	1.000	185	0%	56	28.6%	132	46.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SANT,superfamily_Homeodomain_like,superfamily_SSF52540
SMARCA5	8467	genome.wustl.edu	37	4	144474309	144474309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003601.2	+1	reviewed	p.R1044Q	1.000	261	0%	90	43.3%	246	47.5%	benign(0.029)	tolerated(0.23)	neutral(0.043)	NULL
FREM3	166752	genome.wustl.edu	37	4	144618816	144618816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000329798	-1	known	p.E1005K	0.997	116	0%	58	46.6%	0	-	possibly_damaging(0.659)	tolerated(0.27)	neutral(0.266)	NULL
ABCE1	6059	genome.wustl.edu	37	4	146031299	146031299	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040876.1	+1	reviewed	p.S150	0.972	58	0%	43	34.9%	29	48.2%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCE1	6059	genome.wustl.edu	37	4	146038505	146038505	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040876.1	+1	reviewed	p.C287	1.000	299	0%	112	39.3%	21	23.8%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
OTUD4	54726	genome.wustl.edu	37	4	146058959	146058959	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102653.1	-1	reviewed	p.E925*	1.000	125	0%	109	45%	12	25%	-	-	-	NULL
OTUD4	54726	genome.wustl.edu	37	4	146059262	146059262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102653.1	-1	reviewed	p.E824*	1.000	78	0%	39	41%	8	75%	-	-	-	NULL
SLC10A7	84068	genome.wustl.edu	37	4	147204409	147204409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029998.3	-1	validated	p.S261L	1.000	67	0%	28	50%	4	0%	benign(0)	tolerated(1)	-	NULL
POU4F2	5458	genome.wustl.edu	37	4	147561190	147561190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004575.2	+1	validated	p.A154T	1.000	327	0.3%	81	42%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
POU4F2	5458	genome.wustl.edu	37	4	147561909	147561909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004575.2	+1	validated	p.F393L	1.000	47	0%	20	45%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
TMEM184C	55751	genome.wustl.edu	37	4	148545217	148545217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018241.2	+1	validated	p.L87I	1.000	204	0%	313	45.7%	12	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF300
PRMT10	90826	genome.wustl.edu	37	4	148563980	148563980	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138364.2	-1	provisional	p.R719	0.217	118	0%	81	44.4%	13	53.8%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DCLK2	166614	genome.wustl.edu	37	4	151141906	151141906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040260.2	+1	validated	p.L370F	0.896	207	0%	130	40.8%	1	0%	benign(0.141)	tolerated(0.07)	neutral(0.331)	superfamily_Protein kinase-like (PK-like)
DCLK2	166614	genome.wustl.edu	37	4	151168773	151168773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040260.2	+1	validated	p.E599D	1.000	17	0%	54	37%	1	0%	possibly_damaging(0.463)	tolerated(0.13)	neutral(0.404)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRBA	987	genome.wustl.edu	37	4	151271169	151271169	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006726.2	-1	validated	p.S2457*	1.000	152	0%	96	16.7%	43	0%	-	-	-	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
LRBA	987	genome.wustl.edu	37	4	151509256	151509256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006726.2	-1	validated	p.E2103K	1.000	84	0%	39	48.7%	26	30.7%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_PH domain-like
LRBA	987	genome.wustl.edu	37	4	151749588	151749588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006726.2	-1	validated	p.E1639K	1.000	424	0%	71	59.2%	20	30%	probably_damaging(0.995)	tolerated(0.21)	deleterious(0.502)	superfamily_ARM repeat
LRBA	987	genome.wustl.edu	37	4	151773328	151773328	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006726.2	-1	validated	p.G1178	0.000	118	0%	71	45.1%	6	50%	-	-	-	superfamily_ARM repeat
PRSS48	345062	genome.wustl.edu	37	4	152204388	152204388	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183375.2	+1	provisional	p.E201*	0.249	253	0%	64	43.8%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
FBXW7	55294	genome.wustl.edu	37	4	153244184	153244184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033632.2	-1	reviewed	p.R658Q	1.000	282	0%	64	46.9%	8	25%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_SM00320
FBXW7	55294	genome.wustl.edu	37	4	153253775	153253775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033632.2	-1	reviewed	p.L320I	1.000	150	0%	24	37.5%	6	0%	benign(0.023)	tolerated(0.29)	neutral(0.030)	HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,superfamily_F-box domain
FBXW7	55294	genome.wustl.edu	37	4	153259071	153259071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033632.2	-1	reviewed	p.E248D	1.000	304	0.3%	86	53.5%	7	57.1%	benign(0.01)	tolerated(0.29)	neutral(0.030)	superfamily_WD40 repeat-like
TMEM154	201799	genome.wustl.edu	37	4	153573830	153573830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152680.1	-1	provisional	p.R105I	0.002	186	0%	286	46.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TIGD4	201798	genome.wustl.edu	37	4	153691638	153691638	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145720.2	-1	reviewed	p.D173E	1.000	38	0%	86	24.4%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
TIGD4	201798	genome.wustl.edu	37	4	153691681	153691681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145720.2	-1	reviewed	p.S159L	0.949	27	3.7%	55	45.5%	0	-	possibly_damaging(0.837)	tolerated(0.74)	neutral(0.321)	NULL
FHDC1	85462	genome.wustl.edu	37	4	153897017	153897017	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033393.2	+1	validated	p.D858E	0.000	15	0%	16	37.5%	7	28.5%	benign(0.229)	tolerated(0.26)	neutral(0.057)	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154502001	154502001	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015196.3	+1	validated	p.L228	0.978	404	0.2%	374	44.4%	2	50%	-	-	-	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154504810	154504810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015196.3	+1	validated	p.S349Y	1.000	202	0%	139	46%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154506758	154506758	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015196.3	+1	validated	p.L435	0.999	187	0%	99	45.5%	4	50%	-	-	-	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154507436	154507436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015196.3	+1	validated	p.D462N	1.000	233	0%	168	47%	1	0%	benign(0.002)	tolerated(0.83)	neutral(0.001)	NULL
TLR2	7097	genome.wustl.edu	37	4	154624565	154624565	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003264.3	+1	reviewed	p.D169A	1.000	98	0%	69	44.9%	5	60%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	superfamily_SSF52058
DCHS2	54798	genome.wustl.edu	37	4	155161967	155161967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017639.3	-1	validated	p.P1906S	1.000	194	0%	37	54.1%	0	-	probably_damaging(0.978)	tolerated(0.1)	deleterious(0.707)	HMMPfam_Cadherin,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155191073	155191073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017639.3	-1	validated	p.L1731I	0.906	76	0%	35	28.6%	0	-	benign(0.028)	tolerated(0.26)	neutral(0.036)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155253923	155253923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017639.3	-1	validated	p.R647Q	0.629	57	0%	61	31.1%	1	0%	probably_damaging(0.988)	tolerated(0.6)	neutral(0.442)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155254107	155254107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017639.3	-1	validated	p.E586K	1.000	109	0%	38	26.3%	0	-	possibly_damaging(0.903)	tolerated(0.12)	deleterious(0.619)	superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155287473	155287473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017639.3	-1	validated	p.E195K	1.000	185	0%	36	63.9%	2	100%	probably_damaging(0.999)	tolerated(0.37)	deleterious(0.509)	HMMPfam_Cadherin,superfamily_Cadherin-like
FGA	2243	genome.wustl.edu	37	4	155506776	155506776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000508.3	-1	reviewed	p.K602T	0.223	190	0%	48	52.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LRAT	9227	genome.wustl.edu	37	4	155665754	155665754	+	Silent	SNP	C	C	A	rs61750456		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004744.3	+1	reviewed	p.V92	0.884	75	0%	35	42.9%	2	50%	-	-	-	NULL
RBM46	166863	genome.wustl.edu	37	4	155719112	155719112	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144979.3	+1	validated	p.R101*	1.000	320	0%	225	41.3%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RBM46	166863	genome.wustl.edu	37	4	155720468	155720468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144979.3	+1	validated	p.S385Y	1.000	98	0%	40	45%	0	-	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	NULL
NPY2R	4887	genome.wustl.edu	37	4	156135876	156135876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000910.2	+1	provisional	p.R262Q	1.000	254	0%	61	39.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GUCY1A3	2982	genome.wustl.edu	37	4	156632182	156632182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000856.4	+1	validated	p.H289N	1.000	80	0%	18	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HNOBA
GUCY1A3	2982	genome.wustl.edu	37	4	156643194	156643194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000856.4	+1	validated	p.R574Q	1.000	578	0%	56	44.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
GUCY1B3	2983	genome.wustl.edu	37	4	156725862	156725862	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000857.2	+1	validated	p.E558*	1.000	181	0%	46	58.7%	2	0%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
GLRB	2743	genome.wustl.edu	37	4	158091772	158091772	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000824.4	+1	reviewed	p.A462	0.998	280	0%	77	15.6%	19	5.2%	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GRIA2	2891	genome.wustl.edu	37	4	158262549	158262549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000826.3	+1	reviewed	p.L660I	1.000	263	0%	41	39%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
FAM198B	51313	genome.wustl.edu	37	4	159092389	159092389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031700.2	-1	validated	p.Y47D	1.000	31	0.000	8	0.625	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM144	55314	genome.wustl.edu	37	4	159138544	159138544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018342.4	+1	validated	p.N102D	1.000	386	0.3%	82	52.4%	2	50%	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	HMMPfam_DUF1632
RXFP1	59350	genome.wustl.edu	37	4	159533502	159533502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021634.2	+1	provisional	p.S223Y	1.000	114	0%	185	43.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_L domain-like
RXFP1	59350	genome.wustl.edu	37	4	159568347	159568347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021634.2	+1	provisional	p.F584V	1.000	48	0%	49	42.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPID	5481	genome.wustl.edu	37	4	159640344	159640344	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005038.2	-1	reviewed	p.N107K	1.000	158	0%	222	39.6%	87	42.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
RAPGEF2	9693	genome.wustl.edu	37	4	160251115	160251115	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014247.2	+1	validated	p.R258*	1.000	170	0%	86	52.3%	1	100%	-	-	-	superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160253611	160253611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014247.2	+1	validated	p.E472*	1.000	79	0%	64	40.6%	5	40%	-	-	-	superfamily_PDZ,superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160264190	160264190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014247.2	+1	validated	p.K832T	1.000	151	0%	135	46.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160273927	160273927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014247.2	+1	validated	p.S1158L	1.000	179	0.6%	149	40.9%	6	33.3%	benign(0.253)	tolerated(0.1)	neutral(0.312)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160274803	160274803	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014247.2	+1	validated	p.D1258A	0.997	84	0%	55	49.1%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
MARCH1	55016	genome.wustl.edu	37	4	164506906	164506906	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017923.3	-1	validated	p.R123	0.987	196	0.5%	27	37%	2	0%	-	-	-	NULL
TRIM75	391714	genome.wustl.edu	37	4	165980780	165980780	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000322402	+1	known	p.L161V	0.001	111	0%	94	50%	0	-	-	-	-	NULL
MSMO1	6307	genome.wustl.edu	37	4	166263025	166263025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006745.3	+1	reviewed	p.R270Q	0.008	174	0%	73	47.9%	38	28.9%	benign(0.086)	tolerated(0.12)	neutral(0.267)	NULL
CPE	1363	genome.wustl.edu	37	4	166416799	166416799	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001873.2	+1	reviewed	p.K434N	1.000	153	0%	81	43.2%	49	57.1%	probably_damaging(0.96)	tolerated(0.66)	neutral(0.406)	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain
ANXA10	11199	genome.wustl.edu	37	4	169102845	169102845	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007193.3	+1	reviewed	p.R246*	0.988	340	0%	560	46.6%	0	-	-	-	-	superfamily_Annexin
DDX60	55601	genome.wustl.edu	37	4	169197322	169197322	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017631.5	-1	validated	p.T663	0.004	223	0%	144	38.9%	3	0%	-	-	-	NULL
DDX60L	91351	genome.wustl.edu	37	4	169336896	169336896	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012967.1	-1	validated	p.E927	0.010	169	0%	70	40%	3	66.6%	-	-	-	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX60L	91351	genome.wustl.edu	37	4	169379109	169379109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012967.1	-1	validated	p.E219D	0.012	155	0%	143	42%	3	33.3%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
PALLD	23022	genome.wustl.edu	37	4	169632924	169632924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016081.3	+1	reviewed	p.A605V	0.106	235	0%	79	44.3%	5	40%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
NEK1	4750	genome.wustl.edu	37	4	170321696	170321696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012224.1	-1	validated	p.F1202L	1.000	110	0%	109	95.4%	4	100%	benign(0.054)	tolerated(0.15)	neutral(0.244)	NULL
NEK1	4750	genome.wustl.edu	37	4	170476874	170476874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012224.1	-1	validated	p.N520S	0.997	121	0%	66	33.3%	0	-	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
NEK1	4750	genome.wustl.edu	37	4	170506511	170506511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012224.1	-1	validated	p.L266I	1.000	113	0%	84	36.9%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Protein kinase-like (PK-like)
C4orf27	54969	genome.wustl.edu	37	4	170669943	170669943	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017867.2	-1	validated	p.K150T	1.000	86	0%	123	45.5%	11	9%	benign(0.038)	tolerated(0.26)	neutral(0.036)	HMMPfam_DUF2228
MFAP3L	9848	genome.wustl.edu	37	4	170912544	170912544	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021647.6	-1	validated	p.Y405	0.775	382	0%	159	42.1%	0	-	-	-	-	NULL
GALNTL6	442117	genome.wustl.edu	37	4	173873375	173873375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001034845.2	+1	validated	p.P446H	1.000	71	0%	21	42.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ricin B-like lectins
MORF4	10934	genome.wustl.edu	37	4	174537324	174537324	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006792.2	-1	validated	p.I157M	1.000	604	0%	162	45.1%	0	-	-	-	-	HMMPfam_MRG
GLRA3	8001	genome.wustl.edu	37	4	175649825	175649825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006529.2	-1	validated	p.R98C	1.000	98	0%	44	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ADAM29	11086	genome.wustl.edu	37	4	175898347	175898347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130703.1	+1	reviewed	p.E557D	0.323	157	0%	35	54.3%	0	-	benign(0.032)	tolerated(0.34)	neutral(0.025)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM29	11086	genome.wustl.edu	37	4	175898474	175898474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130703.1	+1	reviewed	p.D600Y	1.000	164	0%	44	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00608
WDR17	116966	genome.wustl.edu	37	4	177041140	177041140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170710.4	+1	reviewed	p.D168Y	0.982	158	0%	82	36.6%	0	-	possibly_damaging(0.623)	deleterious(0.03)	deleterious(0.582)	HMMSmart_WD40,superfamily_Amine_DH_B_like
WDR17	116966	genome.wustl.edu	37	4	177071068	177071068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170710.4	+1	reviewed	p.L694M	1.000	107	0.9%	73	53.4%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
WDR17	116966	genome.wustl.edu	37	4	177071649	177071649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170710.4	+1	reviewed	p.L761V	0.982	118	0%	82	43.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SPATA4	132851	genome.wustl.edu	37	4	177114186	177114186	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144644.2	-1	provisional	p.I130	0.998	56	0%	102	33.3%	0	-	-	-	-	HMMPfam_DUF1042
ASB5	140458	genome.wustl.edu	37	4	177138097	177138097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080874.2	-1	reviewed	p.S245N	0.672	302	0%	122	48.4%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NEIL3	55247	genome.wustl.edu	37	4	178257299	178257299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018248.2	+1	validated	p.K151E	1.000	132	0%	70	48.6%	7	57.1%	benign(0)	tolerated(1)	-	superfamily_N-terminal domain of MutM-like DNA repair proteins
ODZ3	55714	genome.wustl.edu	37	4	183549948	183549948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080477.1	+1	provisional	p.F298L	1.000	86	0%	35	40%	2	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Ten_N
ODZ3	55714	genome.wustl.edu	37	4	183652202	183652202	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080477.1	+1	provisional	p.F959	0.991	297	0.3%	146	49.3%	1	100%	-	-	-	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183673037	183673037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080477.1	+1	provisional	p.I1238M	0.998	89	0%	36	50%	0	-	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	superfamily_ConA_like_lec_gl,superfamily_SSF101898
ODZ3	55714	genome.wustl.edu	37	4	183714188	183714188	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080477.1	+1	provisional	p.P2121	0.988	50	0%	63	39.7%	1	0%	-	-	-	NULL
ODZ3	55714	genome.wustl.edu	37	4	183714274	183714274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080477.1	+1	provisional	p.R2150Q	1.000	88	1.1%	81	49.4%	1	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_RHS_repeat
ODZ3	55714	genome.wustl.edu	37	4	183714393	183714393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080477.1	+1	provisional	p.R2190W	0.771	99	1%	104	45.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
WWC2	80014	genome.wustl.edu	37	4	184182396	184182396	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024949.5	+1	validated	p.P540	1.000	116	0%	92	46.7%	9	44.4%	-	-	-	NULL
TRAPPC11	60684	genome.wustl.edu	37	4	184603955	184603955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021942.4	+1	validated	p.R395I	1.000	108	0%	139	48.2%	3	66.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TRAPPC11	60684	genome.wustl.edu	37	4	184615841	184615841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021942.4	+1	validated	p.V865I	0.999	105	1%	105	35.2%	8	12.5%	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
TRAPPC11	60684	genome.wustl.edu	37	4	184627969	184627969	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021942.4	+1	validated	p.S1022*	0.986	133	0%	99	54.5%	16	12.5%	-	-	-	HMMPfam_DUF1683
ENPP6	133121	genome.wustl.edu	37	4	185012350	185012350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153343.3	-1	validated	p.L435I	0.005	69	0%	26	42.3%	0	-	unknown(0)	tolerated(0.17)	-	NULL
ENPP6	133121	genome.wustl.edu	37	4	185045377	185045377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153343.3	-1	validated	p.Y157C	1.000	164	0%	94	42.6%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP6	133121	genome.wustl.edu	37	4	185138817	185138817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153343.3	-1	validated	p.E52D	1.000	78	0%	52	30.8%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP6	133121	genome.wustl.edu	37	4	185138823	185138823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153343.3	-1	validated	p.F50L	0.997	77	0%	54	59.3%	0	-	probably_damaging(0.999)	tolerated(0.71)	deleterious(0.492)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
CASP3	836	genome.wustl.edu	37	4	185553062	185553062	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004346.3	-1	reviewed	p.F114V	1.000	131	0%	190	44.7%	38	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,superfamily_Caspase-like
CCDC111	201973	genome.wustl.edu	37	4	185582935	185582935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152683.2	+1	validated	p.L96I	1.000	52	0%	92	47.8%	2	50%	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	NULL
MLF1IP	79682	genome.wustl.edu	37	4	185616486	185616486	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024629.3	-1	validated	p.R405*	0.955	111	0%	92	41.3%	133	45.1%	-	-	-	NULL
MLF1IP	79682	genome.wustl.edu	37	4	185623263	185623263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024629.3	-1	validated	p.L302M	0.963	169	0%	226	42%	128	50%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
ACSL1	2180	genome.wustl.edu	37	4	185724638	185724638	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001995.2	-1	reviewed	p.R11*	1.000	150	0%	68	45.6%	9	33.3%	-	-	-	NULL
SLC25A4	291	genome.wustl.edu	37	4	186066073	186066073	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001151.3	+1	reviewed	p.F89	0.999	78	0%	103	35.9%	103	43.6%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A4	291	genome.wustl.edu	37	4	186066382	186066382	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001151.3	+1	reviewed	p.F192	0.987	19	0%	33	33.3%	123	39.8%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
KIAA1430	57587	genome.wustl.edu	37	4	186112079	186112079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020827.1	-1	validated	p.S91Y	0.002	197	0%	387	46%	15	26.6%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
SNX25	83891	genome.wustl.edu	37	4	186283084	186283084	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031953.2	+1	validated	p.I722	1.000	67	0%	70	42.9%	19	31.5%	-	-	-	HMMPfam_Nexin_C
UFSP2	55325	genome.wustl.edu	37	4	186336327	186336327	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000511485	-1	known	p.A136T	1.000	145	0%	101	38.6%	22	22.7%	-	-	-	NULL
C4orf47	441054	genome.wustl.edu	37	4	186357438	186357438	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114357.1	+1	predicted	p.G153	1.000	65	0%	131	51.9%	1	100%	-	-	-	NULL
CCDC110	256309	genome.wustl.edu	37	4	186379559	186379559	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152775.3	-1	validated	p.E728*	1.000	84	0%	163	47.9%	0	-	-	-	-	NULL
CCDC110	256309	genome.wustl.edu	37	4	186380662	186380662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152775.3	-1	validated	p.E360A	0.971	135	0%	290	44.1%	0	-	possibly_damaging(0.677)	deleterious(0.05)	deleterious(0.587)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186533063	186533063	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021069.4	-1	reviewed	p.R985	1.000	356	0%	242	45%	111	54%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SORBS2	8470	genome.wustl.edu	37	4	186544524	186544524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021069.4	-1	reviewed	p.E683K	0.989	207	0%	204	41.7%	0	-	possibly_damaging(0.454)	tolerated(0.45)	neutral(0.161)	NULL
F11	2160	genome.wustl.edu	37	4	187194256	187194256	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000128.3	+1	reviewed	p.E84*	1.000	109	0%	49	53.1%	0	-	-	-	-	HMMSmart_SM00223,PatternScan_APPLE,HMMPfam_PAN_1
F11	2160	genome.wustl.edu	37	4	187201170	187201170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000128.3	+1	reviewed	p.L254I	1.000	83	0%	53	39.6%	0	-	possibly_damaging(0.946)	tolerated(0.29)	neutral(0.419)	HMMSmart_SM00223,PatternScan_APPLE,HMMPfam_PAN_1
FAT1	2195	genome.wustl.edu	37	4	187509973	187509973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005245.3	-1	reviewed	p.E4514*	1.000	148	0%	87	40.2%	73	71.2%	-	-	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187539828	187539828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005245.3	-1	reviewed	p.D2638N	1.000	64	0%	55	56.4%	16	31.2%	possibly_damaging(0.697)	tolerated(0.34)	neutral(0.273)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187584594	187584594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005245.3	-1	reviewed	p.E1147*	0.999	166	0%	175	46.9%	4	50%	-	-	-	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187628202	187628202	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005245.3	-1	reviewed	p.F927C	0.997	89	0%	98	42.9%	5	40%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
SDHA	6389	genome.wustl.edu	37	5	233681	233681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004168.2	+1	reviewed	p.R329*	1.000	151	0%	133	48.9%	122	3.2%	-	-	-	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein catalytic domain
AHRR	57491	genome.wustl.edu	37	5	434588	434588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020731.3	+1	reviewed	p.S600Y	0.001	61	0%	36	52.8%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
C5orf55	116349	genome.wustl.edu	37	5	442836	442836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138464.2	-1	validated	p.N34	0.009	29	0%	40	47.5%	15	60%	-	-	-	NULL
TRIP13	9319	genome.wustl.edu	37	5	916037	916037	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004237.3	+1	reviewed	p.S384	0.245	166	0%	85	40%	30	46.6%	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC6A19	340024	genome.wustl.edu	37	5	1216685	1216685	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000452116	+1	known	p.E270*	1.000	38	0%	53	49.1%	0	-	-	-	-	NULL
SLC6A19	340024	genome.wustl.edu	37	5	1216840	1216840	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000452116	+1	known	p.A321	0.000	22	0%	31	51.6%	0	-	-	-	-	NULL
TERT	7015	genome.wustl.edu	37	5	1264629	1264629	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198253.2	-1	reviewed	p.D911	0.000	29	0%	18	44.4%	9	44.4%	-	-	-	NULL
LOC100288833	100288833	genome.wustl.edu	37	5	2755246	2755246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342504.1	-1	model	p.E77K	0.000	4	0.000	46	0.522	0	-	unknown(0)	-	-	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5306692	5306692	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139056.2	+1	reviewed	p.R1088*	0.924	37	0%	71	49.3%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
KIAA0947	23379	genome.wustl.edu	37	5	5461768	5461768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015325.1	+1	validated	p.S774Y	0.003	303	0%	166	47.6%	4	75%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SRD5A1	6715	genome.wustl.edu	37	5	6668359	6668359	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001047.2	+1	validated	p.I253S	0.319	76	0%	250	11.6%	15	6.6%	benign(0.015)	tolerated(0.06)	neutral(0.323)	HMMPfam_Steroid_dh
ADCY2	108	genome.wustl.edu	37	5	7766897	7766897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020546.2	+1	reviewed	p.A731V	0.763	225	0%	91	46.2%	1	0%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
ADCY2	108	genome.wustl.edu	37	5	7789781	7789781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020546.2	+1	reviewed	p.F832L	1.000	88	0%	152	40.8%	2	50%	possibly_damaging(0.531)	tolerated(0.21)	neutral(0.223)	NULL
FASTKD3	79072	genome.wustl.edu	37	5	7866989	7866989	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024091.2	-1	validated	p.F403C	0.017	55	0%	79	20.3%	5	40%	possibly_damaging(0.569)	tolerated(0.24)	neutral(0.233)	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9136715	9136715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003966.2	-1	reviewed	p.Q500H	1.000	172	0%	48	45.8%	5	20%	probably_damaging(0.955)	tolerated(0.17)	neutral(0.458)	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
DNAH5	1767	genome.wustl.edu	37	5	13700959	13700959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.G4505C	1.000	191	0%	50	38%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13701534	13701534	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.I4450	0.900	65	0%	37	29.7%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13716744	13716744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.R4254I	1.000	177	0%	108	40.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13754320	13754320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.R3516I	1.000	134	0%	43	37.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13776642	13776642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.E3093D	1.000	191	0%	20	40%	0	-	benign(0.023)	tolerated(0.22)	neutral(0.043)	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13777373	13777373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.D3015Y	1.000	323	0%	73	39.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13841848	13841848	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.E1813*	1.000	225	0%	88	39.8%	0	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13870998	13870998	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.E1238*	1.000	212	0%	58	39.7%	0	-	-	-	-	superfamily_Spectrin
DNAH5	1767	genome.wustl.edu	37	5	13928247	13928247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001369.2	-1	reviewed	p.R78Q	1.000	220	0%	102	41.2%	0	-	benign(0.299)	tolerated(0.62)	neutral(0.097)	NULL
FAM105B	90268	genome.wustl.edu	37	5	14673809	14673809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138348.4	+1	validated	p.H71N	1.000	150	0%	223	43%	1	0%	benign(0.006)	tolerated(0.29)	neutral(0.029)	NULL
FAM105B	90268	genome.wustl.edu	37	5	14693049	14693049	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000506417	+1	known	p.S49G	0.309	182	0%	61	54.1%	15	33.3%	-	-	-	NULL
MARCH11	441061	genome.wustl.edu	37	5	16177854	16177854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102562.1	-1	provisional	p.K225T	1.000	59	0%	106	47.2%	0	-	benign(0.081)	deleterious(0.02)	neutral(0.389)	NULL
MYO10	4651	genome.wustl.edu	37	5	16681504	16681504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012334.2	-1	validated	p.E1433G	1.000	135	0%	134	41.8%	38	65.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
MYO10	4651	genome.wustl.edu	37	5	16701512	16701512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012334.2	-1	validated	p.E998K	1.000	68	0%	21	42.9%	47	46.8%	benign(0.291)	tolerated(0.53)	neutral(0.097)	NULL
MYO10	4651	genome.wustl.edu	37	5	16701654	16701654	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012334.2	-1	validated	p.I950	0.988	75	0%	36	16.7%	52	3.8%	-	-	-	NULL
CDH12	1010	genome.wustl.edu	37	5	21975477	21975477	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004061.3	-1	reviewed	p.D83E	1.000	151	0%	23	30.4%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH12	1010	genome.wustl.edu	37	5	22078677	22078677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004061.3	-1	reviewed	p.E37K	1.000	151	0%	28	42.9%	0	-	benign(0.007)	tolerated(0.48)	neutral(0.011)	NULL
PRDM9	56979	genome.wustl.edu	37	5	23521146	23521146	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020227.2	+1	provisional	p.A122	0.000	109	0%	98	52%	0	-	-	-	-	NULL
CDH10	1008	genome.wustl.edu	37	5	24487881	24487881	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006727.2	-1	reviewed	p.S753*	1.000	181	0%	49	44.9%	0	-	-	-	-	HMMPfam_Cadherin_C
CDH10	1008	genome.wustl.edu	37	5	24511518	24511518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006727.2	-1	reviewed	p.R307Q	1.000	203	0%	45	46.7%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24537669	24537669	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006727.2	-1	reviewed	p.R116*	1.000	184	0%	31	58.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PDZD2	23037	genome.wustl.edu	37	5	32088820	32088820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178140.2	+1	reviewed	p.S1756G	0.000	143	0%	82	43.9%	0	-	benign(0.054)	deleterious(0)	neutral(0.448)	NULL
ZFR	51663	genome.wustl.edu	37	5	32379271	32379271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016107.3	-1	validated	p.L929I	1.000	68	0%	51	43.1%	44	52.2%	possibly_damaging(0.942)	tolerated(0.09)	deleterious(0.683)	HMMPfam_DZF,HMMSmart_DZF
ZFR	51663	genome.wustl.edu	37	5	32388771	32388771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016107.3	-1	validated	p.R718C	1.000	114	0%	76	48.7%	70	44.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZFR	51663	genome.wustl.edu	37	5	32404116	32404116	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016107.3	-1	validated	p.S373	0.552	408	0.2%	145	51%	33	63.6%	-	-	-	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2
NPR3	4883	genome.wustl.edu	37	5	32724845	32724845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000908.2	+1	validated	p.M271V	1.000	351	0%	106	41.5%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
NPR3	4883	genome.wustl.edu	37	5	32774917	32774917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000908.2	+1	validated	p.I388S	1.000	235	0%	142	13.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ADAMTS12	81792	genome.wustl.edu	37	5	33576216	33576216	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030955.2	-1	reviewed	p.Y1305	0.013	327	0%	62	53.2%	2	0%	-	-	-	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33576290	33576290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030955.2	-1	reviewed	p.S1281T	0.000	348	0%	89	41.6%	1	0%	possibly_damaging(0.844)	tolerated(0.21)	neutral(0.367)	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33624433	33624433	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030955.2	-1	reviewed	p.I682	0.029	103	0%	27	51.9%	0	-	-	-	-	NULL
ADAMTS12	81792	genome.wustl.edu	37	5	33683142	33683142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030955.2	-1	reviewed	p.I299T	1.000	155	0%	26	38.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS12	81792	genome.wustl.edu	37	5	33881323	33881323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030955.2	-1	reviewed	p.K130N	0.997	155	0%	32	28.1%	0	-	possibly_damaging(0.803)	tolerated(0.22)	neutral(0.344)	HMMPfam_Pep_M12B_propep
TTC23L	153657	genome.wustl.edu	37	5	34845699	34845699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144725.3	+1	validated	p.A59V	0.000	138	0%	95	42.1%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
BRIX1	55299	genome.wustl.edu	37	5	34918520	34918520	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018321.3	+1	validated	p.N71H	1.000	34	0%	117	47.9%	46	47.8%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Brix
AGXT2	64902	genome.wustl.edu	37	5	35035333	35035333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031900.3	-1	reviewed	p.S192Y	1.000	159	0%	69	59.4%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
SPEF2	79925	genome.wustl.edu	37	5	35641775	35641775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024867.3	+1	validated	p.T135N	0.800	71	0%	27	48.1%	3	66.6%	possibly_damaging(0.465)	tolerated(0.49)	neutral(0.164)	HMMPfam_DUF1042
SPEF2	79925	genome.wustl.edu	37	5	35759770	35759770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024867.3	+1	validated	p.R1190Q	0.668	80	0%	63	47.6%	1	100%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35793427	35793427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024867.3	+1	validated	p.F1574C	0.000	170	0%	55	41.8%	0	-	probably_damaging(0.973)	tolerated(0.18)	deleterious(0.471)	NULL
IL7R	3575	genome.wustl.edu	37	5	35867526	35867526	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002185.2	+1	reviewed	p.K114Q	0.002	111	0%	34	41.2%	0	-	possibly_damaging(0.93)	deleterious(0.02)	deleterious(0.760)	NULL
IL7R	3575	genome.wustl.edu	37	5	35874597	35874597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002185.2	+1	reviewed	p.F251L	0.996	384	0%	141	41.1%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
IL7R	3575	genome.wustl.edu	37	5	35876194	35876194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002185.2	+1	reviewed	p.P329H	0.200	130	0%	76	50%	1	0%	possibly_damaging(0.701)	deleterious(0)	deleterious(0.697)	NULL
UGT3A1	133688	genome.wustl.edu	37	5	35954517	35954517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152404.3	-1	validated	p.Q453H	0.239	151	0%	30	53.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
LMBRD2	92255	genome.wustl.edu	37	5	36105249	36105249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007527.1	-1	validated	p.E650K	1.000	284	0%	41	31.7%	5	60%	benign(0.028)	tolerated(0.34)	neutral(0.025)	NULL
LMBRD2	92255	genome.wustl.edu	37	5	36122400	36122400	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007527.1	-1	validated	p.F368I	1.000	75	0%	69	44.9%	6	33.3%	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_LMBR1
NADKD1	133686	genome.wustl.edu	37	5	36225693	36225693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001085411.1	-1	validated	p.V171F	1.000	321	0%	103	49.5%	21	52.3%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)
NIPBL	25836	genome.wustl.edu	37	5	37036581	37036581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133433.3	+1	reviewed	p.S1988Y	1.000	21	0%	22	68.2%	25	64%	benign(0.137)	deleterious(0)	neutral(0.456)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37044790	37044790	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133433.3	+1	reviewed	p.Q2101P	1.000	73	0%	80	47.5%	27	29.6%	possibly_damaging(0.739)	tolerated(0.05)	deleterious(0.616)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37049318	37049318	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133433.3	+1	reviewed	p.F2290C	1.000	222	0%	82	52.4%	40	45%	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37125426	37125426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023073.3	-1	predicted	p.E1804*	0.996	489	0%	299	38.8%	12	41.6%	-	-	-	NULL
C5orf42	65250	genome.wustl.edu	37	5	37180205	37180205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023073.3	-1	predicted	p.K764T	0.370	73	0%	96	47.9%	1	0%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37186482	37186482	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023073.3	-1	predicted	p.F246	0.982	80	0%	88	40.9%	2	50%	-	-	-	NULL
C5orf42	65250	genome.wustl.edu	37	5	37198893	37198893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023073.3	-1	predicted	p.L76F	0.998	144	0%	73	43.8%	2	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GDNF	2668	genome.wustl.edu	37	5	37816190	37816190	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000514.2	-1	reviewed	p.F67V	1.000	138	0%	86	51.2%	1	0%	possibly_damaging(0.894)	deleterious(0)	deleterious(0.796)	NULL
LIFR	3977	genome.wustl.edu	37	5	38530694	38530694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127671.1	-1	reviewed	p.R19I	0.002	392	0%	80	33.8%	0	-	possibly_damaging(0.922)	deleterious(0.03)	deleterious(0.736)	NULL
RICTOR	253260	genome.wustl.edu	37	5	38945110	38945110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152756.3	-1	validated	p.V1565A	1.000	85	0%	50	52%	2	100%	probably_damaging(0.974)	tolerated(0.12)	deleterious(0.676)	superfamily_ARM repeat
RICTOR	253260	genome.wustl.edu	37	5	38945790	38945790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152756.3	-1	validated	p.S1479Y	1.000	117	0%	47	34%	3	66.6%	possibly_damaging(0.509)	deleterious(0)	deleterious(0.615)	superfamily_ARM repeat
C9	735	genome.wustl.edu	37	5	39285310	39285310	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001737.3	-1	reviewed	p.N557	0.000	86	0%	35	34.3%	0	-	-	-	-	NULL
C9	735	genome.wustl.edu	37	5	39288904	39288904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001737.3	-1	reviewed	p.M522I	0.575	314	0%	54	51.9%	0	-	benign(0)	tolerated(0.82)	neutral(0.001)	superfamily_SSF57196
DAB2	1601	genome.wustl.edu	37	5	39382955	39382955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001343.2	-1	validated	p.S369L	0.838	224	0%	52	42.3%	4	25%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
TTC33	23548	genome.wustl.edu	37	5	40716488	40716488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012382.2	-1	validated	p.R183M	0.187	165	0.6%	101	34.7%	10	10%	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
TTC33	23548	genome.wustl.edu	37	5	40716593	40716593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012382.2	-1	validated	p.R148Q	1.000	79	0%	72	50%	3	66.6%	probably_damaging(0.99)	tolerated(0.18)	deleterious(0.497)	HMMSmart_SM00028,superfamily_TPR-like
TTC33	23548	genome.wustl.edu	37	5	40728533	40728533	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012382.2	-1	validated	p.E117*	1.000	56	0%	66	22.7%	7	14.2%	-	-	-	superfamily_TPR-like
CARD6	84674	genome.wustl.edu	37	5	40843455	40843455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032587.3	+1	reviewed	p.A162V	0.003	67	0%	52	34.6%	4	50%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
CARD6	84674	genome.wustl.edu	37	5	40852400	40852400	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032587.3	+1	reviewed	p.P322	0.004	135	0%	77	45.5%	6	50%	-	-	-	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41000444	41000444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173489.4	-1	validated	p.D1454Y	1.000	79	0%	18	38.9%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41019077	41019077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173489.4	-1	validated	p.L829I	1.000	347	0%	85	32.9%	0	-	probably_damaging(0.993)	tolerated(0.77)	neutral(0.451)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41049411	41049411	+	Missense_Mutation	SNP	G	G	A	rs189991991	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173489.4	-1	validated	p.S491L	0.949	258	0%	56	46.4%	0	-	probably_damaging(0.959)	tolerated(0.13)	deleterious(0.655)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41054893	41054893	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173489.4	-1	validated	p.I361	0.000	284	0%	97	38.1%	0	-	-	-	-	superfamily_ARM repeat
C6	729	genome.wustl.edu	37	5	41181573	41181573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000065.2	-1	reviewed	p.S272*	0.000	281	0%	84	48.8%	0	-	-	-	-	NULL
OXCT1	5019	genome.wustl.edu	37	5	41794170	41794170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000436.3	-1	reviewed	p.D395N	0.553	74	0%	44	38.6%	78	57.6%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_CoA_trans,superfamily_SSF100950
C5orf51	285636	genome.wustl.edu	37	5	41909964	41909964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175921.4	+1	validated	p.I108M	0.999	77	0%	50	48%	6	50%	possibly_damaging(0.685)	tolerated(0.32)	neutral(0.269)	NULL
FBXO4	26272	genome.wustl.edu	37	5	41929935	41929935	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012176.2	+1	reviewed	p.E188*	1.000	383	0%	315	42.9%	8	37.5%	-	-	-	NULL
GHR	2690	genome.wustl.edu	37	5	42718726	42718726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000163.2	+1	reviewed	p.S373P	0.964	97	0%	59	57.6%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
NIM1	167359	genome.wustl.edu	37	5	43246106	43246106	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153361.2	+1	provisional	p.R77*	1.000	185	0%	52	48.1%	1	100%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C5orf34	375444	genome.wustl.edu	37	5	43509425	43509425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000306862	-1	known	p.R6Q	0.232	143	0%	160	43.1%	0	-	benign(0.005)	tolerated(0.24)	neutral(0.037)	NULL
FGF10	2255	genome.wustl.edu	37	5	44388693	44388693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004465.1	-1	reviewed	p.S31F	1.000	97	0%	39	33.3%	0	-	benign(0.195)	deleterious(0.04)	neutral(0.367)	NULL
HCN1	348980	genome.wustl.edu	37	5	45267314	45267314	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021072.2	-1	validated	p.R554*	0.998	189	0%	59	45.8%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
HCN1	348980	genome.wustl.edu	37	5	45645327	45645327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021072.2	-1	validated	p.R270Q	1.000	89	0%	14	57.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
EMB	133418	genome.wustl.edu	37	5	49695699	49695699	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198449.2	-1	reviewed	p.R320	1.000	224	0%	78	43.6%	3	66.6%	-	-	-	NULL
PARP8	79668	genome.wustl.edu	37	5	50123843	50123843	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024615.3	+1	validated	p.S681	1.000	316	0%	117	40.2%	23	34.7%	-	-	-	superfamily_ADP-ribosylation
PARP8	79668	genome.wustl.edu	37	5	50124204	50124204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024615.3	+1	validated	p.N717D	1.000	398	0%	142	45.1%	38	50%	benign(0.297)	tolerated(0.53)	neutral(0.100)	HMMPfam_PARP,superfamily_ADP-ribosylation
ITGA1	3672	genome.wustl.edu	37	5	52161623	52161623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181501.1	+1	reviewed	p.R199I	0.614	119	0%	58	41.4%	6	0%	benign(0.031)	deleterious(0.04)	neutral(0.350)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ITGA2	3673	genome.wustl.edu	37	5	52351367	52351367	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002203.3	+1	reviewed	e8-1	1.000	88	0%	21	42.9%	0	-	-	-	-	-
ITGA2	3673	genome.wustl.edu	37	5	52351403	52351403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002203.3	+1	reviewed	p.R272Q	0.371	123	0%	25	52%	0	-	benign(0.141)	tolerated(0.34)	neutral(0.035)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
ITGA2	3673	genome.wustl.edu	37	5	52355822	52355822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002203.3	+1	reviewed	p.R431I	1.000	156	0%	21	28.6%	0	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	superfamily_Integrin alpha N-terminal domain
ITGA2	3673	genome.wustl.edu	37	5	52369005	52369005	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002203.3	+1	reviewed	p.L829	1.000	186	0%	41	36.6%	0	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ITGA2	3673	genome.wustl.edu	37	5	52377428	52377428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002203.3	+1	reviewed	p.D1016Y	1.000	287	0.3%	69	50.7%	1	100%	possibly_damaging(0.918)	tolerated(0.08)	deleterious(0.668)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
FST	10468	genome.wustl.edu	37	5	52781787	52781787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013409.1	+1	reviewed	p.S320L	0.998	95	0%	82	45.1%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
NDUFS4	4724	genome.wustl.edu	37	5	52856535	52856535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002495.2	+1	reviewed	p.W15R	0.397	184	0%	38	36.8%	72	44.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GZMK	3003	genome.wustl.edu	37	5	54320574	54320574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002104.2	+1	reviewed	p.V51I	0.000	126	0%	39	38.5%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
GZMA	3001	genome.wustl.edu	37	5	54403644	54403644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006144.3	+1	reviewed	p.L80I	1.000	214	0%	97	40.2%	9	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
GZMA	3001	genome.wustl.edu	37	5	54404199	54404199	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006144.3	+1	reviewed	p.R202*	0.000	96	0%	40	55%	10	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
DHX29	54505	genome.wustl.edu	37	5	54557225	54557225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019030.2	-1	validated	p.L1311I	1.000	67	0%	62	41.9%	42	33.3%	benign(0.014)	tolerated(1)	neutral(0.001)	NULL
DHX29	54505	genome.wustl.edu	37	5	54570457	54570457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019030.2	-1	validated	p.R892I	1.000	41	0%	59	66.1%	18	88.8%	probably_damaging(0.976)	tolerated(0.07)	deleterious(0.737)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
DHX29	54505	genome.wustl.edu	37	5	54579354	54579354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019030.2	-1	validated	p.P548S	0.998	194	0%	144	45.8%	17	35.2%	benign(0.047)	tolerated(1)	neutral(0.003)	superfamily_SSF52540
SKIV2L2	23517	genome.wustl.edu	37	5	54642883	54642883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015360.4	+1	validated	p.R384I	1.000	107	0%	105	35.2%	17	41.1%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_SSF52540
SKIV2L2	23517	genome.wustl.edu	37	5	54674149	54674149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015360.4	+1	validated	p.K606N	1.000	50	0%	61	42.6%	23	52.1%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
PPAP2A	8611	genome.wustl.edu	37	5	54763889	54763889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176895.1	-1	reviewed	p.K101T	1.000	201	0%	109	45.9%	27	25.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
DDX4	54514	genome.wustl.edu	37	5	55034777	55034777	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024415.2	+1	validated	e1-1	0.073	89	0%	184	40.2%	0	-	-	-	-	-
DDX4	54514	genome.wustl.edu	37	5	55083779	55083779	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024415.2	+1	validated	p.R375*	1.000	211	0%	91	39.6%	0	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX4	54514	genome.wustl.edu	37	5	55086459	55086459	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024415.2	+1	validated	p.R410*	1.000	292	0%	166	43.4%	0	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
IL31RA	133396	genome.wustl.edu	37	5	55212563	55212563	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139017.4	+1	validated	p.I637S	1.000	124	0%	117	53.8%	0	-	possibly_damaging(0.811)	deleterious(0)	deleterious(0.750)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56170989	56170989	+	Missense_Mutation	SNP	C	C	A	rs56095529		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005921.1	+1	validated	p.S606Y	0.979	176	0%	33	57.6%	7	57.1%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56178423	56178423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005921.1	+1	validated	p.I1132M	0.831	139	0%	45	44.4%	15	46.6%	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
SETD9	133383	genome.wustl.edu	37	5	56207237	56207237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153706.3	+1	validated	p.E114*	1.000	120	0%	122	41.8%	1	0%	-	-	-	NULL
PLK2	10769	genome.wustl.edu	37	5	57752839	57752839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006622.2	-1	validated	p.F363L	1.000	48	0%	92	20.7%	18	5.5%	unknown(0)	deleterious(0)	-	superfamily_Kinase_like
PDE4D	5144	genome.wustl.edu	37	5	58289203	58289203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001104631.1	-1	validated	p.F337L	1.000	109	0%	46	34.8%	0	-	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	NULL
PDE4D	5144	genome.wustl.edu	37	5	58511670	58511670	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001104631.1	-1	validated	p.R194*	1.000	96	0%	17	23.5%	1	100%	-	-	-	NULL
ZSWIM6	57688	genome.wustl.edu	37	5	60768589	60768589	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020928.1	+1	provisional	p.D253A	1.000	261	0%	43	34.9%	3	33.3%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_SWIM
KIF2A	3796	genome.wustl.edu	37	5	61649145	61649145	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098511.1	+1	validated	p.Q167H	1.000	59	0%	107	24.3%	28	42.8%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
LRRC70	100130733	genome.wustl.edu	37	5	61876140	61876140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181506.4	+1	validated	p.N292I	1.000	50	0%	21	38.1%	0	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	HMMPfam_LRR_1,superfamily_SSF52058
RNF180	285671	genome.wustl.edu	37	5	63626135	63626135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113561.1	+1	validated	p.F494S	1.000	103	0%	132	34.1%	2	50%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_RING/U-box
RGS7BP	401190	genome.wustl.edu	37	5	63894202	63894202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029875.1	+1	provisional	p.E208*	1.000	125	0%	50	48%	0	-	-	-	-	NULL
ADAMTS6	11174	genome.wustl.edu	37	5	64520823	64520823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_197941.2	-1	reviewed	p.R707*	1.000	174	0%	46	45.7%	0	-	-	-	-	NULL
ADAMTS6	11174	genome.wustl.edu	37	5	64748743	64748743	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_197941.2	-1	reviewed	p.F212V	1.000	220	0%	79	43%	2	0%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
PPWD1	23398	genome.wustl.edu	37	5	64872843	64872843	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015342.2	+1	validated	p.F369	0.988	208	0%	110	40%	11	45.4%	-	-	-	superfamily_WD40_like
TRIM23	373	genome.wustl.edu	37	5	64905164	64905164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001656.3	-1	reviewed	p.K317T	1.000	276	0.4%	64	40.6%	14	28.5%	benign(0.039)	deleterious(0)	neutral(0.447)	HMMSmart_SM00502
SGTB	54557	genome.wustl.edu	37	5	64976532	64976532	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019072.2	-1	validated	p.K190T	1.000	428	0%	281	43.4%	1	0%	possibly_damaging(0.829)	deleterious(0.01)	deleterious(0.720)	superfamily_SSF48452
NLN	57486	genome.wustl.edu	37	5	65073308	65073308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020726.3	+1	provisional	p.S169P	1.000	119	0%	76	46.1%	23	78.2%	possibly_damaging(0.797)	tolerated(0.27)	neutral(0.333)	superfamily_SSF55486
ERBB2IP	55914	genome.wustl.edu	37	5	65334238	65334238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018695.2	+1	reviewed	p.E412*	1.000	145	0.7%	70	41.4%	11	18.1%	-	-	-	superfamily_SSF52058
ERBB2IP	55914	genome.wustl.edu	37	5	65350337	65350337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018695.2	+1	reviewed	p.R1064Q	1.000	280	0%	65	41.5%	28	57.1%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
SREK1	140890	genome.wustl.edu	37	5	65460688	65460688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077199.1	+1	validated	p.S322A	1.000	174	0%	96	46.9%	31	51.6%	unknown(0)	tolerated(0.18)	-	superfamily_SSF54928
MAST4	375449	genome.wustl.edu	37	5	66426063	66426063	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015183.2	+1	validated	p.E402*	1.000	129	0%	41	41.5%	2	50%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CD180	4064	genome.wustl.edu	37	5	66479672	66479672	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005582.2	-1	validated	p.F333	0.165	129	0%	65	52.3%	2	50%	-	-	-	superfamily_L domain-like
CD180	4064	genome.wustl.edu	37	5	66481815	66481815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005582.2	-1	validated	p.N41H	0.998	146	0%	153	42.5%	1	100%	benign(0.006)	tolerated(0.06)	neutral(0.323)	superfamily_L domain-like
PIK3R1	5295	genome.wustl.edu	37	5	67588951	67588951	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181523.1	+1	reviewed	p.R348*	1.000	105	0%	83	45.8%	56	64.2%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
PIK3R1	5295	genome.wustl.edu	37	5	67589618	67589618	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181523.1	+1	reviewed	p.R461*	0.484	30	0%	81	40.7%	37	10.8%	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67590426	67590426	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181523.1	+1	reviewed	p.E496	1.000	91	0%	67	47.8%	49	34.6%	-	-	-	NULL
MRPS36	92259	genome.wustl.edu	37	5	68524152	68524152	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033281.5	+1	validated	p.K78Q	1.000	151	0%	145	44.1%	66	42.4%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
CDK7	1022	genome.wustl.edu	37	5	68551312	68551312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001799.3	+1	validated	p.S85Y	1.000	56	0%	158	42.4%	25	52%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RAD17	5884	genome.wustl.edu	37	5	68669760	68669760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133339.1	+1	reviewed	p.R49I	1.000	80	0%	115	47%	12	66.6%	possibly_damaging(0.843)	tolerated(0.06)	deleterious(0.645)	NULL
MARVELD2	153562	genome.wustl.edu	37	5	68736287	68736287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001038603.2	+1	validated	p.R505I	1.000	49	0%	128	44.5%	13	53.8%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	HMMPfam_Occludin_ELL
OCLN	100506658	genome.wustl.edu	37	5	70378639	70378639	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000515515	-1	known	p.G84	0.999	75	0%	43	90.7%	3	0%	-	-	-	NULL
BDP1	55814	genome.wustl.edu	37	5	70798550	70798550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018429.2	+1	reviewed	p.L725I	0.000	110	0%	103	42.7%	3	66.6%	benign(0.099)	tolerated(0.17)	neutral(0.067)	NULL
BDP1	55814	genome.wustl.edu	37	5	70808146	70808146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018429.2	+1	reviewed	p.H1380N	0.002	58	0%	68	41.2%	0	-	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
BDP1	55814	genome.wustl.edu	37	5	70845256	70845256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018429.2	+1	reviewed	p.V2273G	0.264	61	0%	161	45.3%	6	83.3%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71490492	71490492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005909.3	+1	validated	p.F437C	1.000	270	0%	99	44.4%	6	66.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71491402	71491402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005909.3	+1	validated	p.K740N	1.000	58	0%	76	39.5%	10	30%	unknown(0)	tolerated(0.36)	-	NULL
FCHO2	115548	genome.wustl.edu	37	5	72333014	72333014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138782.2	+1	validated	p.I296V	1.000	37	0%	106	42.5%	6	66.6%	benign(0.002)	tolerated(0.34)	neutral(0.023)	NULL
TMEM171	134285	genome.wustl.edu	37	5	72427423	72427423	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173490.6	+1	validated	p.I281L	0.999	232	0%	119	46.2%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73163704	73163704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080479.2	+1	reviewed	p.S719Y	0.980	222	0%	69	43.5%	5	20%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RGNEF	64283	genome.wustl.edu	37	5	73181688	73181688	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080479.2	+1	reviewed	p.E1023	1.000	83	0%	58	48.3%	8	37.5%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
HEXB	3074	genome.wustl.edu	37	5	73992830	73992830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000521.3	+1	reviewed	p.N190D	1.000	183	0%	200	39.5%	64	42.1%	benign(0.262)	deleterious(0.01)	neutral(0.433)	HMMPfam_Glyco_hydro_20b,superfamily_beta-N-acetylhexosaminidase-like domain
GFM2	84340	genome.wustl.edu	37	5	74043556	74043556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032380.3	-1	reviewed	p.R190Q	1.000	220	0%	113	42.5%	11	72.7%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD31	256006	genome.wustl.edu	37	5	74387115	74387115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000274361	-1	known	p.Y1758H	0.037	170	0%	65	15.4%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74442447	74442447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000274361	-1	known	p.F930C	0.000	37	0%	12	58.3%	0	-	possibly_damaging(0.915)	-	-	superfamily_ANK
POC5	134359	genome.wustl.edu	37	5	74988260	74988260	+	Missense_Mutation	SNP	G	G	T	rs146386463	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099271.1	-1	validated	p.F252L	1.000	142	0%	63	49.2%	26	46.1%	possibly_damaging(0.94)	tolerated(0.06)	deleterious(0.708)	NULL
POC5	134359	genome.wustl.edu	37	5	75008207	75008207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152408.2	-1	validated	p.M1I	0.000	110	0%	98	39.8%	0	-	benign(0.006)	-	-	NULL
WDR41	55255	genome.wustl.edu	37	5	76732214	76732214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018268.2	-1	validated	p.F367V	1.000	303	0%	117	45.3%	44	61.3%	possibly_damaging(0.87)	deleterious(0)	deleterious(0.782)	superfamily_WD40_like
AP3B1	8546	genome.wustl.edu	37	5	77316567	77316567	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003664.3	-1	reviewed	p.E981*	1.000	168	0%	93	36.6%	37	10.8%	-	-	-	NULL
AP3B1	8546	genome.wustl.edu	37	5	77423877	77423877	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003664.3	-1	reviewed	p.R649*	0.996	123	0%	30	50%	22	4.5%	-	-	-	NULL
AP3B1	8546	genome.wustl.edu	37	5	77452157	77452157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003664.3	-1	reviewed	p.K466N	1.000	149	0%	121	40.5%	18	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Adaptin_N,superfamily_ARM repeat
DMGDH	29958	genome.wustl.edu	37	5	78322308	78322308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013391.2	-1	reviewed	p.F710C	1.000	124	0%	51	39.2%	1	0%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_GCV_T,superfamily_Aminomethyltransferase folate-binding domain
JMY	133746	genome.wustl.edu	37	5	78586054	78586054	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152405.4	+1	validated	p.L439	0.962	120	0%	77	48.1%	6	33.3%	-	-	-	NULL
JMY	133746	genome.wustl.edu	37	5	78610533	78610533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152405.4	+1	validated	p.D840N	0.062	13	0.000	9	0.556	3	33.3%	benign(0.009)	tolerated(0.75)	neutral(0.002)	NULL
HOMER1	9456	genome.wustl.edu	37	5	78752720	78752720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004272.3	-1	validated	p.N43H	1.000	159	0%	81	50.6%	13	30.7%	unknown(0)	tolerated(0.06)	-	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like
CMYA5	202333	genome.wustl.edu	37	5	79025046	79025046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153610.3	+1	validated	p.R153I	0.765	288	0%	83	39.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79025319	79025319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153610.3	+1	validated	p.F244C	0.997	98	0%	25	32%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79027035	79027035	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153610.3	+1	validated	p.I816S	0.003	162	0%	24	45.8%	0	-	benign(0.271)	deleterious(0.01)	neutral(0.435)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79028075	79028075	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153610.3	+1	validated	p.E1163*	0.257	118	0.8%	23	47.8%	0	-	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79032923	79032923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153610.3	+1	validated	p.K2779E	0.183	249	0%	54	40.7%	0	-	benign(0.039)	tolerated(0.05)	neutral(0.347)	NULL
SPZ1	84654	genome.wustl.edu	37	5	79617200	79617200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032567.3	+1	validated	p.K389R	0.000	28	0%	56	48.2%	0	-	possibly_damaging(0.555)	tolerated(0.36)	neutral(0.209)	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79743945	79743945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105251.1	+1	validated	p.S942Y	0.982	159	0%	105	43.8%	7	28.5%	possibly_damaging(0.806)	deleterious(0.03)	deleterious(0.668)	NULL
ZFYVE16	9765	genome.wustl.edu	37	5	79746309	79746309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105251.1	+1	validated	p.E1096K	1.000	142	0%	103	30.1%	8	37.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
DHFR	1719	genome.wustl.edu	37	5	79924971	79924971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000791.3	-1	reviewed	p.L167I	0.131	64	0%	100	42%	26	46.1%	benign(0.003)	tolerated(0.05)	neutral(0.345)	HMMPfam_DHFR_1,superfamily_Dihydrofolate reductases
DHFR	1719	genome.wustl.edu	37	5	79924972	79924972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000511032	-1	known	p.S128A	0.134	62	0%	101	46.5%	26	38.4%	unknown(0)	-	-	NULL
MSH3	4437	genome.wustl.edu	37	5	80063801	80063801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002439.3	+1	reviewed	p.K649T	0.443	115	0%	98	18.4%	8	0%	benign(0.097)	tolerated(0.3)	neutral(0.036)	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III
CKMT2	1160	genome.wustl.edu	37	5	80550220	80550220	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099735.1	+1	reviewed	p.F119	1.000	120	0%	85	37.6%	4	0%	-	-	-	HMMPfam_ATP-gua_PtransN,superfamily_ATP-gua_Ptrans
ACOT12	134526	genome.wustl.edu	37	5	80655779	80655779	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130767.2	-1	validated	p.R147*	0.994	240	0%	218	45.4%	0	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82815255	82815255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004385.4	+1	reviewed	p.R377K	0.948	126	0%	68	45.6%	0	-	benign(0.024)	tolerated(0.23)	neutral(0.043)	NULL
VCAN	1462	genome.wustl.edu	37	5	82817945	82817945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004385.4	+1	reviewed	p.D1274N	0.995	110	0%	38	50%	3	0%	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	NULL
VCAN	1462	genome.wustl.edu	37	5	82875883	82875883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004385.4	+1	reviewed	p.R3322I	1.000	144	0%	38	36.8%	23	43.4%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HAPLN1	1404	genome.wustl.edu	37	5	82940305	82940305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001884.3	-1	validated	p.P218T	1.000	32	0%	28	28.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
EDIL3	10085	genome.wustl.edu	37	5	83259122	83259122	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005711.3	-1	reviewed	p.F399V	1.000	230	0%	35	60%	2	0%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
RASA1	5921	genome.wustl.edu	37	5	86649000	86649000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002890.1	+1	reviewed	p.R427Q	1.000	94	0%	26	46.2%	12	66.6%	possibly_damaging(0.938)	tolerated(0.08)	deleterious(0.683)	HMMSmart_SM00252,superfamily_SH2 domain
CETN3	1070	genome.wustl.edu	37	5	89695217	89695217	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004365.2	-1	reviewed	p.R140*	1.000	468	0%	125	45.6%	49	36.7%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
LYSMD3	116068	genome.wustl.edu	37	5	89814746	89814746	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198273.1	-1	validated	p.E271*	1.000	194	0%	107	52.3%	8	25%	-	-	-	NULL
LYSMD3	116068	genome.wustl.edu	37	5	89815201	89815201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198273.1	-1	validated	p.E119G	1.000	137	0%	78	43.6%	8	75%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GPR98	84059	genome.wustl.edu	37	5	89971991	89971991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032119.3	+1	reviewed	p.S1803Y	1.000	78	0%	51	43.1%	0	-	possibly_damaging(0.942)	tolerated(0.38)	neutral(0.405)	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90055241	90055241	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032119.3	+1	reviewed	p.E3986*	1.000	507	0%	204	48%	1	100%	-	-	-	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90449037	90449037	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032119.3	+1	reviewed	e89-1	1.000	89	1.1%	53	47.2%	5	80%	-	-	-	-
KIAA0825	285600	genome.wustl.edu	37	5	93739298	93739298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145678.1	-1	validated	p.T955A	0.967	138	0%	76	36.8%	0	-	benign(0.026)	tolerated(0.09)	neutral(0.297)	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93809006	93809006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145678.1	-1	validated	p.K482N	1.000	302	0%	222	43.2%	0	-	possibly_damaging(0.926)	tolerated(0.16)	neutral(0.434)	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93856291	93856291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145678.1	-1	validated	p.K211T	0.968	221	0%	146	47.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MCTP1	79772	genome.wustl.edu	37	5	94043253	94043253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024717.4	-1	validated	p.K983R	1.000	383	0%	56	35.7%	0	-	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
MCTP1	79772	genome.wustl.edu	37	5	94206163	94206163	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024717.4	-1	validated	p.E759*	1.000	303	0%	118	41.5%	0	-	-	-	-	NULL
FAM81B	153643	genome.wustl.edu	37	5	94756012	94756012	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152548.2	+1	validated	p.R188*	0.939	72	0%	58	41.4%	1	0%	-	-	-	NULL
FAM81B	153643	genome.wustl.edu	37	5	94782336	94782336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152548.2	+1	validated	p.L322I	0.009	28	0%	22	45.5%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
TTC37	9652	genome.wustl.edu	37	5	94852694	94852694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014639.2	-1	provisional	p.R788C	1.000	175	0%	29	65.5%	15	86.6%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_Prenyl_trans
TTC37	9652	genome.wustl.edu	37	5	94876477	94876477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014639.2	-1	provisional	p.E154*	0.002	354	0%	84	33.3%	11	0%	-	-	-	superfamily_SSF48452
ELL2	22936	genome.wustl.edu	37	5	95234288	95234288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012081.5	-1	validated	p.S394Y	1.000	76	0%	124	41.1%	1	0%	unknown(0)	deleterious(0.04)	-	NULL
PCSK1	5122	genome.wustl.edu	37	5	95728867	95728867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000439.4	-1	reviewed	p.F700L	0.998	227	0%	124	46%	1	0%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
CAST	831	genome.wustl.edu	37	5	96073590	96073590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001750.5	+1	reviewed	p.T246N	0.998	305	0%	90	42.2%	20	10%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Calpain_inhib
LNPEP	4012	genome.wustl.edu	37	5	96363494	96363494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005575.2	+1	reviewed	p.F974L	1.000	234	0%	139	46%	11	45.4%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	NULL
CHD1	1105	genome.wustl.edu	37	5	98208173	98208173	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001270.2	-1	reviewed	p.E1220*	1.000	81	0%	76	88.2%	7	85.7%	-	-	-	superfamily_Homeodomain-like
CHD1	1105	genome.wustl.edu	37	5	98235283	98235283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001270.2	-1	reviewed	p.H329R	1.000	133	0%	190	48.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLCO4C1	353189	genome.wustl.edu	37	5	101597620	101597620	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_180991.4	-1	validated	p.L339	0.997	128	0%	40	35%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
PAM	5066	genome.wustl.edu	37	5	102296861	102296861	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000919.3	+1	reviewed	e13-1	1.000	110	0%	47	38.3%	0	-	-	-	-	-
PAM	5066	genome.wustl.edu	37	5	102309950	102309950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000919.3	+1	reviewed	p.Q431H	0.969	214	0%	36	47.2%	53	43.3%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
PPIP5K2	23262	genome.wustl.edu	37	5	102537303	102537303	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015216.2	+1	provisional	p.E1213*	0.960	127	0%	80	13.8%	18	11.1%	-	-	-	NULL
NUDT12	83594	genome.wustl.edu	37	5	102890452	102890452	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031438.2	-1	validated	p.F356C	1.000	81	0%	16	50%	6	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX
EFNA5	1946	genome.wustl.edu	37	5	107006303	107006303	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001962.2	-1	reviewed	p.V4	1.000	43	0%	38	55.3%	6	83.3%	-	-	-	NULL
FER	2241	genome.wustl.edu	37	5	108171491	108171491	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005246.2	+1	reviewed	p.K155T	1.000	65	0%	69	40.6%	0	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	NULL
FER	2241	genome.wustl.edu	37	5	108203514	108203514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005246.2	+1	reviewed	p.M176I	1.000	141	0%	36	44.4%	3	66.6%	-	-	-	NULL
FER	2241	genome.wustl.edu	37	5	108380480	108380480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005246.2	+1	reviewed	p.F605L	1.000	123	0%	89	42.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
WDR36	134430	genome.wustl.edu	37	5	110446590	110446590	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139281.2	+1	reviewed	p.K571N	0.990	68	0%	16	37.5%	6	66.6%	possibly_damaging(0.94)	tolerated(0.24)	neutral(0.422)	superfamily_WD40_like
CAMK4	814	genome.wustl.edu	37	5	110712565	110712565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001744.3	+1	reviewed	p.L104R	1.000	95	0%	25	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
EPB41L4A	64097	genome.wustl.edu	37	5	111754691	111754691	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022140.3	-1	validated	p.L16V	1.000	85	0%	63	36.5%	3	33.3%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
APC	324	genome.wustl.edu	37	5	112177049	112177049	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000038.4	+1	reviewed	p.R1920*	0.823	330	0.3%	131	37.4%	7	28.5%	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112177793	112177793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000038.4	+1	reviewed	p.L2168I	1.000	38	0%	39	61.5%	9	44.4%	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
DCP2	167227	genome.wustl.edu	37	5	112346470	112346470	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000513585	+1	known	p.S337A	0.993	198	0%	249	47.4%	9	55.5%	-	-	-	NULL
TSSK1B	83942	genome.wustl.edu	37	5	112769636	112769636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032028.3	-1	validated	p.E301K	0.590	146	0%	47	36.2%	0	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	superfamily_Protein kinase-like (PK-like)
TSSK1B	83942	genome.wustl.edu	37	5	112769886	112769886	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032028.3	-1	validated	p.D217	0.589	132	0%	35	48.6%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
YTHDC2	64848	genome.wustl.edu	37	5	112862360	112862360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022828.3	+1	validated	p.E185K	1.000	83	0%	50	30%	2	0%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
YTHDC2	64848	genome.wustl.edu	37	5	112874845	112874845	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022828.3	+1	validated	p.E393*	1.000	17	0%	66	37.9%	6	33.3%	-	-	-	NULL
YTHDC2	64848	genome.wustl.edu	37	5	112902844	112902844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022828.3	+1	validated	p.E966D	1.000	653	0%	79	10.1%	9	0%	possibly_damaging(0.861)	tolerated(0.5)	neutral(0.343)	HMMPfam_DUF1605
YTHDC2	64848	genome.wustl.edu	37	5	112917346	112917346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022828.3	+1	validated	p.N1196T	1.000	78	0%	25	56%	8	12.5%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
TRIM36	55521	genome.wustl.edu	37	5	114462356	114462356	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018700.3	-1	reviewed	p.V677	0.051	304	0%	198	43.4%	8	87.5%	-	-	-	NULL
TRIM36	55521	genome.wustl.edu	37	5	114473237	114473237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018700.3	-1	reviewed	p.S315*	1.000	209	0%	146	46.6%	6	0%	-	-	-	NULL
TRIM36	55521	genome.wustl.edu	37	5	114499237	114499237	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018700.3	-1	reviewed	p.K92N	1.000	141	0%	135	45.2%	4	25%	possibly_damaging(0.663)	deleterious(0.01)	deleterious(0.640)	HMMSmart_SM00184,superfamily_RING/U-box
TICAM2	353376	genome.wustl.edu	37	5	114916621	114916621	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021649.5	-1	validated	p.I111	1.000	169	0.6%	104	49%	6	0%	-	-	-	superfamily_TIR
CDO1	1036	genome.wustl.edu	37	5	115151936	115151936	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001801.2	-1	validated	p.F53	1.000	152	0%	24	54.2%	0	-	-	-	-	HMMPfam_CDO_I,superfamily_RmlC-like cupins
AQPEP	206338	genome.wustl.edu	37	5	115361747	115361747	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173800.4	+1	validated	p.K969Q	0.953	148	0%	40	22.5%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SEMA6A	57556	genome.wustl.edu	37	5	115783188	115783188	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000515129	-1	known	p.R253Q	0.986	124	0%	43	46.5%	4	100%	-	-	-	NULL
SEMA6A	57556	genome.wustl.edu	37	5	115815880	115815880	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020796.3	-1	validated	p.P396	0.001	162	0%	28	28.6%	1	100%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6A	57556	genome.wustl.edu	37	5	115818196	115818196	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020796.3	-1	validated	p.Q346	1.000	117	0%	28	67.9%	2	0%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6A	57556	genome.wustl.edu	37	5	115831156	115831156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020796.3	-1	validated	p.F133L	1.000	214	0%	103	42.7%	1	100%	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
DMXL1	1657	genome.wustl.edu	37	5	118451959	118451959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005509.4	+1	validated	p.S224Y	1.000	103	0%	142	40.1%	18	22.2%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DMXL1	1657	genome.wustl.edu	37	5	118506828	118506828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005509.4	+1	validated	p.E2114D	0.997	121	0%	67	46.3%	7	42.8%	benign(0.011)	tolerated(0.13)	neutral(0.253)	NULL
HSD17B4	3295	genome.wustl.edu	37	5	118835117	118835117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000414.2	+1	reviewed	p.D360Y	0.908	140	0%	56	44.6%	53	43.3%	benign(0.405)	deleterious(0.01)	deleterious(0.536)	superfamily_SSF54637
HSD17B4	3295	genome.wustl.edu	37	5	118872202	118872202	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000414.2	+1	reviewed	p.E693A	1.000	217	0%	24	33.3%	178	43.2%	benign(0.031)	tolerated(0.4)	neutral(0.018)	HMMPfam_SCP2,superfamily_SCP2
LOX	4015	genome.wustl.edu	37	5	121411168	121411168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002317.5	-1	reviewed	p.K270R	1.000	194	0%	124	46.8%	42	33.3%	benign(0.176)	tolerated(0.15)	neutral(0.257)	HMMPfam_Lysyl_oxidase
SNCAIP	9627	genome.wustl.edu	37	5	121739487	121739487	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005460.2	+1	reviewed	e2-1	1.000	443	0%	86	9.3%	0	-	-	-	-	-
SNCAIP	9627	genome.wustl.edu	37	5	121761156	121761156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005460.2	+1	reviewed	p.S371Y	0.999	68	0%	31	38.7%	5	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_ANK,superfamily_ANK
SNCAIP	9627	genome.wustl.edu	37	5	121787135	121787135	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005460.2	+1	reviewed	p.R865*	0.990	98	0%	36	47.2%	3	0%	-	-	-	NULL
PRDM6	93166	genome.wustl.edu	37	5	122516014	122516014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136239.1	+1	validated	p.F557S	1.000	194	0%	71	47.9%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CSNK1G3	1456	genome.wustl.edu	37	5	122940461	122940461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001044723.1	+1	validated	p.T409N	1.000	121	0%	23	34.8%	26	46.1%	possibly_damaging(0.95)	tolerated(0.1)	deleterious(0.680)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123983585	123983585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020747.2	-1	validated	p.K831R	1.000	148	0%	105	45.7%	3	66.6%	probably_damaging(0.971)	tolerated(0.65)	neutral(0.416)	NULL
GRAMD3	65983	genome.wustl.edu	37	5	125819171	125819171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023927.2	+1	validated	p.F251C	1.000	304	0%	104	43.3%	10	80%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ALDH7A1	501	genome.wustl.edu	37	5	125885920	125885920	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001182.3	-1	reviewed	p.T461	1.000	165	0%	136	39%	108	53.7%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
LMNB1	4001	genome.wustl.edu	37	5	126141372	126141372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005573.2	+1	reviewed	p.K209T	1.000	189	0%	214	43.9%	264	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
MEGF10	84466	genome.wustl.edu	37	5	126746240	126746240	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032446.2	+1	validated	p.L359	0.305	125	0%	39	41%	0	-	-	-	-	HMMSmart_SM00180,superfamily_EGF/Laminin
MEGF10	84466	genome.wustl.edu	37	5	126753401	126753401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032446.2	+1	validated	p.S401Y	1.000	260	0%	46	43.5%	0	-	benign(0.313)	deleterious(0)	deleterious(0.542)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
MEGF10	84466	genome.wustl.edu	37	5	126774147	126774147	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032446.2	+1	validated	p.H707	1.000	66	0%	22	45.5%	0	-	-	-	-	superfamily_EGF/Laminin
CTXN3	613212	genome.wustl.edu	37	5	126993333	126993333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001048252.2	+1	validated	p.F40L	1.000	194	0.5%	51	21.6%	0	-	benign(0.219)	tolerated(0.15)	neutral(0.263)	NULL
FBN2	2201	genome.wustl.edu	37	5	127597531	127597531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001999.3	-1	reviewed	p.E2754G	0.999	362	0%	92	43.5%	84	44%	benign(0.291)	deleterious(0.02)	deleterious(0.473)	NULL
FBN2	2201	genome.wustl.edu	37	5	127626514	127626514	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001999.3	-1	reviewed	p.F2119V	1.000	212	0%	60	53.3%	23	34.7%	benign(0.114)	tolerated(0.5)	neutral(0.019)	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN2	2201	genome.wustl.edu	37	5	127641568	127641568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001999.3	-1	reviewed	p.R1832H	1.000	142	0%	47	38.3%	27	51.8%	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127674667	127674667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001999.3	-1	reviewed	p.E1144K	1.000	112	0%	46	45.7%	21	33.3%	benign(0.03)	tolerated(0.11)	neutral(0.273)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,superfamily_EGF/Laminin
SLC27A6	28965	genome.wustl.edu	37	5	128365290	128365290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017372.1	+1	reviewed	p.M525L	1.000	137	0%	36	52.8%	3	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_SSF56801
ISOC1	51015	genome.wustl.edu	37	5	128448558	128448558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016048.2	+1	validated	p.R254Q	1.000	181	0%	20	30%	67	53.7%	benign(0.067)	tolerated(0.71)	neutral(0.006)	HMMPfam_Isochorismatase,superfamily_Iscrsm_hydrolase
CHSY3	337876	genome.wustl.edu	37	5	129520174	129520174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175856.4	+1	validated	p.G447R	1.000	85	0%	27	37%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_CHGN
RAPGEF6	51735	genome.wustl.edu	37	5	130797632	130797632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016340.5	-1	validated	p.R877H	1.000	137	0%	94	50%	1	100%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RAPGEF6	51735	genome.wustl.edu	37	5	130841146	130841146	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016340.5	-1	validated	p.L338	1.000	208	0%	155	38.1%	1	100%	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
FNIP1	96459	genome.wustl.edu	37	5	131013480	131013480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133372.2	-1	validated	p.K479Q	1.000	124	0%	79	49.4%	7	57.1%	benign(0.043)	tolerated(0.15)	neutral(0.243)	NULL
FNIP1	96459	genome.wustl.edu	37	5	131014836	131014836	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000513722	-1	known	p.E206*	1.000	128	0%	64	35.9%	8	50%	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	NULL
FNIP1	96459	genome.wustl.edu	37	5	131042209	131042209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133372.2	-1	validated	p.F270C	1.000	295	0%	61	41%	5	20%	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	NULL
ACSL6	23305	genome.wustl.edu	37	5	131298314	131298314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009185.1	-1	validated	p.E591K	1.000	206	0%	114	39.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
SLC22A5	6584	genome.wustl.edu	37	5	131719914	131719914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003060.3	+1	reviewed	p.K191N	0.010	351	0%	163	55.2%	7	57.1%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RAD50	10111	genome.wustl.edu	37	5	131953889	131953889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005732.3	+1	reviewed	p.R1098W	0.047	169	0%	175	40.6%	29	41.3%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF3A	11127	genome.wustl.edu	37	5	132052650	132052650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007054.5	-1	validated	p.E215K	1.000	176	0%	79	45.6%	5	40%	benign(0.004)	tolerated(0.42)	neutral(0.014)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF3A	11127	genome.wustl.edu	37	5	132061829	132061829	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007054.5	-1	validated	p.Q167	1.000	149	0%	124	48.4%	8	62.5%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
GDF9	2661	genome.wustl.edu	37	5	132197428	132197428	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005260.3	-1	reviewed	p.I406	1.000	98	0%	61	36.1%	2	50%	-	-	-	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
UQCRQ	27089	genome.wustl.edu	37	5	132203179	132203179	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014402.4	+1	reviewed	e2-1	1.000	137	0%	346	41%	5	40%	-	-	-	-
HSPA4	3308	genome.wustl.edu	37	5	132427048	132427048	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002154.3	+1	validated	p.Q514	0.998	293	0%	165	50.3%	182	47.2%	-	-	-	HMMPfam_HSP70,superfamily_SSF100920
MIR1289-2	100302134	genome.wustl.edu	37	5	132763309	132763309	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000408360	-1	known	NULL	0.000	143	0%	62	30.6%	0	-	-	-	-	-
C5orf15	56951	genome.wustl.edu	37	5	133292564	133292564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020199.2	-1	validated	p.D262Y	1.000	92	0%	63	42.9%	48	43.7%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
C5orf15	56951	genome.wustl.edu	37	5	133292644	133292644	+	Missense_Mutation	SNP	C	C	T	rs187246788	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020199.2	-1	validated	p.G235D	1.000	124	0%	80	48.7%	57	57.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SEC24A	10802	genome.wustl.edu	37	5	134050739	134050739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021982.1	+1	validated	p.A918V	0.999	75	0%	139	34.5%	17	58.8%	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
DDX46	9879	genome.wustl.edu	37	5	134117736	134117736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014829.2	+1	reviewed	p.F335L	0.995	63	0%	61	42.6%	41	39%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF52540
PITX1	5307	genome.wustl.edu	37	5	134364975	134364975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002653.4	-1	reviewed	p.R147C	1.000	28	0%	14	50%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_HOX,superfamily_Homeodomain_like
LOC153328	153328	genome.wustl.edu	37	5	135223762	135223762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145282.4	+1	validated	p.L155I	0.002	171	0%	68	47.1%	1	0%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
FBXL21	26223	genome.wustl.edu	37	5	135277071	135277071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012159.4	+1	validated	p.R339Q	0.998	131	0%	91	40.7%	0	-	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	superfamily_RNI-like
LECT2	3950	genome.wustl.edu	37	5	135283002	135283002	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000512872	-1	known	p.Q74P	0.004	97	0%	104	45.2%	0	-	-	-	-	NULL
TGFBI	7045	genome.wustl.edu	37	5	135383035	135383035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000358.2	+1	reviewed	p.D233N	1.000	107	0%	35	40%	41	19.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
TGFBI	7045	genome.wustl.edu	37	5	135390545	135390545	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000514554	+1	known	p.S186*	1.000	199	0%	215	36.3%	33	12.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
TGFBI	7045	genome.wustl.edu	37	5	135390546	135390546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000358.2	+1	reviewed	p.R469H	1.000	197	0%	214	35%	33	12.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
TGFBI	7045	genome.wustl.edu	37	5	135396585	135396585	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000514554	+1	known	p.W340R	0.998	84	0%	30	53.3%	83	25.3%	-	-	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
SMAD5	4090	genome.wustl.edu	37	5	135489569	135489569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398807	+1	known	p.K40N	1.000	309	0%	71	36.6%	13	46.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
TRPC7	57113	genome.wustl.edu	37	5	135561853	135561853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000513104	-1	known	p.L711I	1.000	179	0%	151	45.7%	0	-	benign(0.006)	tolerated(0.75)	neutral(0.002)	NULL
SPOCK1	6695	genome.wustl.edu	37	5	136448205	136448205	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004598.3	-1	reviewed	p.S131	0.684	127	0%	40	50%	2	0%	-	-	-	superfamily_SSF100895
FAM13B	51306	genome.wustl.edu	37	5	137289150	137289150	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016603.2	-1	validated	p.R553*	1.000	370	0.5%	230	44.3%	13	7.6%	-	-	-	NULL
FAM13B	51306	genome.wustl.edu	37	5	137342825	137342825	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016603.2	-1	validated	p.L234	1.000	205	0%	267	47.6%	10	80%	-	-	-	NULL
BRD8	10902	genome.wustl.edu	37	5	137492934	137492934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006696.3	-1	reviewed	p.R940H	1.000	191	0.5%	125	51.2%	93	46.2%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137762735	137762735	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016604.3	+1	validated	p.R1495*	1.000	79	0%	53	41.5%	24	12.5%	-	-	-	superfamily_Clavaminate synthase-like
REEP2	51308	genome.wustl.edu	37	5	137780137	137780137	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000512126	+1	known	p.S110L	0.969	102	0%	92	35.9%	2	0%	-	-	-	HMMPfam_TB2_DP1_HVA22
HSPA9	3313	genome.wustl.edu	37	5	137893121	137893121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000512328	-1	known	p.E88*	1.000	330	0%	200	43.5%	319	45.1%	benign(0.358)	deleterious(0)	deleterious(0.558)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
SIL1	64374	genome.wustl.edu	37	5	138362520	138362520	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037633.1	-1	reviewed	p.A205	0.701	154	0%	64	48.4%	34	64.7%	-	-	-	superfamily_ARM-type_fold
SIL1	64374	genome.wustl.edu	37	5	138362593	138362593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037633.1	-1	reviewed	p.D181G	1.000	185	0%	69	46.4%	69	36.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold
PSD2	84249	genome.wustl.edu	37	5	139197112	139197112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032289.2	+1	provisional	p.D355N	1.000	71	0%	39	28.2%	1	100%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
SLC4A9	83697	genome.wustl.edu	37	5	139745523	139745523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031467.2	+1	validated	p.F605L	1.000	473	0%	367	41.7%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_HCO3_cotransp
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139876302	139876302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020690.4	+1	reviewed	p.D815Y	1.000	80	0%	56	41.1%	6	0%	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	superfamily_ANK
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139887381	139887381	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020690.4	+1	reviewed	p.K1188T	1.000	58	0%	43	44.2%	14	14.2%	possibly_damaging(0.837)	deleterious(0.01)	deleterious(0.725)	superfamily_ANK
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139917081	139917081	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020690.4	+1	reviewed	p.G2379*	1.000	228	0%	59	45.8%	66	18.1%	-	-	-	NULL
HARS2	23438	genome.wustl.edu	37	5	140075702	140075702	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012208.2	+1	reviewed	p.R216	0.993	218	0%	206	46.1%	43	51.1%	-	-	-	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
PCDHA1	56147	genome.wustl.edu	37	5	140166824	140166824	+	Missense_Mutation	SNP	G	G	A	rs143010606		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018900.2	+1	reviewed	p.E317K	1.000	76	0%	104	43.3%	1	100%	benign(0.008)	tolerated(0.2)	neutral(0.049)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA1	56147	genome.wustl.edu	37	5	140168275	140168275	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031410.1	+1	reviewed	p.S800	0.939	57	0%	82	37.8%	0	-	-	-	-	NULL
PCDHA3	56145	genome.wustl.edu	37	5	140181332	140181332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018906.2	+1	reviewed	p.R184G	0.296	62	0%	119	49.6%	1	0%	benign(0.055)	deleterious(0.03)	neutral(0.368)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA3	56145	genome.wustl.edu	37	5	140181584	140181584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018906.2	+1	reviewed	p.D268N	1.000	57	0%	79	53.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140201910	140201910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018908.2	+1	reviewed	p.N184D	0.000	48	0%	132	48.5%	2	100%	benign(0.005)	tolerated(0.67)	neutral(0.003)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140202322	140202322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018908.2	+1	reviewed	p.A321V	0.990	28	0%	59	39%	2	0%	benign(0.077)	deleterious(0.03)	neutral(0.370)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140203133	140203133	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018908.2	+1	reviewed	p.A591	0.622	44	0%	20	35%	2	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA6	56142	genome.wustl.edu	37	5	140208418	140208418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018909.2	+1	reviewed	p.E248K	0.002	50	0%	98	43.9%	1	0%	benign(0.002)	tolerated(1)	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140221151	140221151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018911.2	+1	reviewed	p.G82D	1.000	74	0%	69	40.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140249397	140249397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018902.3	+1	reviewed	p.D237N	1.000	15	0%	50	42%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140250842	140250842	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018902.3	+1	reviewed	p.T718	0.015	35	0%	33	42.4%	0	-	-	-	-	NULL
PCDHA12	56137	genome.wustl.edu	37	5	140255883	140255883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018903.2	+1	reviewed	p.E276K	0.959	49	0%	106	49.1%	1	100%	benign(0.022)	tolerated(0.06)	neutral(0.324)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140262717	140262717	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018904.2	+1	reviewed	p.A288	0.000	84	0%	75	44%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347791	140347791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018899.5	+1	reviewed	p.E480D	0.996	29	0%	30	53.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140348856	140348856	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018899.5	+1	reviewed	p.Q835H	1.000	100	0%	83	39.8%	2	0%	benign(0.146)	tolerated(0.55)	neutral(0.019)	NULL
PCDHB1	29930	genome.wustl.edu	37	5	140431959	140431959	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013340.2	+1	reviewed	p.R302*	0.432	104	0%	69	79.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB1	29930	genome.wustl.edu	37	5	140432577	140432577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013340.2	+1	reviewed	p.N508H	1.000	103	0%	93	38.7%	0	-	possibly_damaging(0.715)	deleterious(0)	deleterious(0.704)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB1	29930	genome.wustl.edu	37	5	140433224	140433224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013340.2	+1	reviewed	p.K723N	0.157	116	0%	167	45.5%	0	-	possibly_damaging(0.919)	tolerated(0.26)	neutral(0.403)	NULL
PCDHB2	56133	genome.wustl.edu	37	5	140474938	140474938	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018936.2	+1	reviewed	p.L188	0.000	58	0%	33	39.4%	47	51%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140515167	140515167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015669.2	+1	reviewed	p.D51Y	1.000	97	0%	56	55.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140516886	140516886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015669.2	+1	reviewed	p.R624C	0.999	33	0.000	9	0.667	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140530918	140530918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018939.2	+1	reviewed	p.E360D	0.001	195	0%	109	46.8%	1	0%	benign(0.006)	tolerated(0.43)	neutral(0.013)	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB7	56129	genome.wustl.edu	37	5	140553937	140553937	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018940.2	+1	reviewed	p.N507	0.996	75	0%	46	47.8%	8	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140557961	140557961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019120.2	+1	reviewed	p.E116K	0.003	145	0%	240	15%	48	18.7%	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMSmart_CA,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140563321	140563321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020957.1	+1	reviewed	p.S396L	0.026	71	0%	78	42.3%	19	21%	possibly_damaging(0.738)	deleterious(0)	deleterious(0.715)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140572768	140572768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018930.3	+1	reviewed	p.L215M	0.017	77	0%	80	46.3%	15	13.3%	benign(0.138)	tolerated(0.13)	neutral(0.264)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140590773	140590773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018932.3	+1	reviewed	p.K765T	0.965	66	0%	114	46.5%	6	66.6%	benign(0.229)	tolerated(0.29)	neutral(0.052)	NULL
PCDHB13	56123	genome.wustl.edu	37	5	140594777	140594777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018933.2	+1	reviewed	p.A361V	0.000	240	0%	122	43.4%	19	94.7%	benign(0.01)	deleterious(0.04)	neutral(0.349)	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140603450	140603450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018934.2	+1	reviewed	p.D125Y	0.999	61	0%	134	38.1%	9	88.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140604658	140604658	+	Silent	SNP	C	C	T	rs192565798	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018934.2	+1	reviewed	p.F527	0.742	59	0%	22	54.5%	20	80%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB18	54660	genome.wustl.edu	37	5	140615462	140615462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000274705	+1	known	p.D393Y	1.000	65	0%	43	51.2%	1	0%	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB18	54660	genome.wustl.edu	37	5	140616346	140616346	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000274705	+1	known	p.S687	0.011	96	0%	79	43%	0	-	-	-	-	NULL
PCDHB15	56121	genome.wustl.edu	37	5	140625361	140625361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018935.2	+1	reviewed	p.E72G	0.000	39	0%	55	43.6%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHGB1	56104	genome.wustl.edu	37	5	140730393	140730393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018922.2	+1	reviewed	p.P189Q	0.889	73	0%	97	40.2%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744763	140744763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018918.2	+1	reviewed	p.S289L	0.000	20	0%	62	41.9%	0	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745113	140745113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018918.2	+1	reviewed	p.T406A	1.000	64	0%	101	42.6%	1	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140751091	140751091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018924.2	+1	reviewed	p.G377E	0.720	53	0%	106	44.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140752350	140752350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018924.2	+1	reviewed	p.P797T	0.003	68	0%	156	40.4%	0	-	-	-	-	NULL
PCDHGB4	8641	genome.wustl.edu	37	5	140767506	140767506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003736.2	+1	reviewed	p.L19F	0.007	83	0%	65	30.8%	9	0%	benign(0.104)	tolerated(0.5)	neutral(0.018)	NULL
PCDHGB4	8641	genome.wustl.edu	37	5	140767985	140767985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003736.2	+1	reviewed	p.F178L	0.305	76	0%	102	48%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768139	140768139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003736.2	+1	reviewed	p.V230I	0.058	33	0%	46	39.1%	0	-	benign(0.001)	tolerated(0.78)	neutral(0.001)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768353	140768353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003736.2	+1	reviewed	p.V301G	0.000	54	0%	107	47.7%	0	-	benign(0.025)	deleterious(0)	neutral(0.446)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140773919	140773919	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032088.1	+1	reviewed	p.V513	0.542	66	0%	65	55.4%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783359	140783359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018921.2	+1	reviewed	p.K280N	0.555	29	0%	92	46.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140784780	140784780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018921.2	+1	reviewed	p.S754Y	0.898	83	0%	80	52.5%	0	-	-	-	-	NULL
PCDHGB6	56100	genome.wustl.edu	37	5	140788661	140788661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018926.2	+1	reviewed	p.T298A	0.012	56	0%	97	42.3%	2	0%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140794314	140794314	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018913.2	+1	reviewed	p.F524	0.009	115	0%	115	39.1%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA10	56106	genome.wustl.edu	37	5	140794681	140794681	+	Missense_Mutation	SNP	G	G	A	rs186848544	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018913.2	+1	reviewed	p.V647I	0.942	40	0%	13	38.5%	3	0%	possibly_damaging(0.544)	tolerated(0.2)	neutral(0.233)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140800929	140800929	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018914.2	+1	reviewed	p.F45	0.005	32	0%	19	47.4%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140811893	140811893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003735.2	+1	reviewed	p.E523K	0.996	81	0%	65	44.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC3	5098	genome.wustl.edu	37	5	140857002	140857002	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002588.2	+1	reviewed	p.L440R	0.003	173	0%	182	48.9%	7	42.8%	possibly_damaging(0.902)	tolerated(0.43)	neutral(0.370)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DIAPH1	1729	genome.wustl.edu	37	5	140913969	140913969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005219.4	-1	reviewed	p.K838N	1.000	294	0%	435	12.9%	49	14.2%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
RELL2	285613	genome.wustl.edu	37	5	141019529	141019529	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130029.1	+1	validated	p.E182	0.999	15	0%	11	36.4%	7	14.2%	-	-	-	NULL
PCDH12	51294	genome.wustl.edu	37	5	141335544	141335544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016580.2	-1	reviewed	p.D625Y	1.000	162	0%	64	40.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH12	51294	genome.wustl.edu	37	5	141336282	141336282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016580.2	-1	reviewed	p.D379Y	0.000	269	0%	108	46.3%	1	0%	possibly_damaging(0.502)	deleterious(0.04)	deleterious(0.516)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
NR3C1	2908	genome.wustl.edu	37	5	142661537	142661537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024094.1	-1	reviewed	p.E752K	1.000	162	0%	72	47.2%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Hormone_recep,superfamily_Str_ncl_receptor
NR3C1	2908	genome.wustl.edu	37	5	142680226	142680226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024094.1	-1	reviewed	p.T525M	0.279	289	0%	80	11.3%	1	0%	benign(0.022)	tolerated(0.09)	neutral(0.297)	NULL
NR3C1	2908	genome.wustl.edu	37	5	142780280	142780280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024094.1	-1	reviewed	p.S42Y	0.996	28	0%	56	37.5%	0	-	benign(0.315)	tolerated(0.05)	neutral(0.444)	HMMPfam_GCR
NR3C1	2908	genome.wustl.edu	37	5	142780282	142780282	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024094.1	-1	reviewed	p.V41	0.677	29	0%	56	28.6%	0	-	-	-	-	HMMPfam_GCR
SH3RF2	153769	genome.wustl.edu	37	5	145439781	145439781	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152550.3	+1	validated	p.I636	0.001	107	0%	34	38.2%	13	23%	-	-	-	NULL
RBM27	54439	genome.wustl.edu	37	5	145613012	145613012	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018989.1	+1	validated	e7-1	1.000	238	0%	181	39.8%	2	100%	-	-	-	-
RBM27	54439	genome.wustl.edu	37	5	145665559	145665559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018989.1	+1	validated	p.E1050A	1.000	168	0%	118	40.7%	28	42.8%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
GPR151	134391	genome.wustl.edu	37	5	145894947	145894947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194251.2	-1	provisional	p.R244C	1.000	81	0%	96	41.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
PPP2R2B	5521	genome.wustl.edu	37	5	145979966	145979966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181676.2	-1	reviewed	p.S286L	1.000	279	0%	81	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
JAKMIP2	9832	genome.wustl.edu	37	5	147015821	147015821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014790.3	-1	provisional	p.Q547H	1.000	209	0%	88	46.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147019324	147019324	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014790.3	-1	provisional	e9-1	1.000	219	0%	117	48.7%	0	-	-	-	-	-
JAKMIP2	9832	genome.wustl.edu	37	5	147028027	147028027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014790.3	-1	provisional	p.R283I	1.000	334	0.3%	151	11.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147030085	147030085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014790.3	-1	provisional	p.R218M	1.000	171	0%	51	41.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147040983	147040983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014790.3	-1	provisional	p.T52N	1.000	128	0%	17	35.3%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
SPINK5	11005	genome.wustl.edu	37	5	147465984	147465984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127698.1	+1	reviewed	p.F100C	0.192	421	0%	99	69.7%	0	-	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK5	11005	genome.wustl.edu	37	5	147516549	147516549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127698.1	+1	reviewed	p.E1094K	0.001	166	0%	61	42.6%	2	50%	benign(0.001)	tolerated(1)	-	NULL
FBXO38	81545	genome.wustl.edu	37	5	147813282	147813282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_205836.1	+1	validated	p.K947E	1.000	160	0%	129	45.7%	17	64.7%	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	NULL
HTR4	3360	genome.wustl.edu	37	5	147902897	147902897	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040173.2	-1	reviewed	p.I122	1.000	142	0.7%	39	53.8%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
ADRB2	154	genome.wustl.edu	37	5	148206726	148206726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000024.5	+1	reviewed	p.S111F	0.997	226	0%	113	51.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SH3TC2	79628	genome.wustl.edu	37	5	148417971	148417971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024577.3	-1	reviewed	p.E296D	1.000	185	0%	70	34.3%	0	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ABLIM3	22885	genome.wustl.edu	37	5	148630012	148630012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014945.2	+1	validated	p.P578S	1.000	322	0%	127	49.6%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	NULL
AFAP1L1	134265	genome.wustl.edu	37	5	148709336	148709336	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152406.2	+1	validated	p.L640	1.000	146	0%	73	47.9%	0	-	-	-	-	NULL
PCYOX1L	78991	genome.wustl.edu	37	5	148748061	148748061	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024028.3	+1	validated	p.L443	1.000	47	0%	37	35.1%	4	50%	-	-	-	HMMPfam_Prenylcys_lyase,superfamily_FAD/NAD(P)-binding domain
PDE6A	5145	genome.wustl.edu	37	5	149245769	149245769	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000440.2	-1	reviewed	p.V774	0.683	200	0%	115	45.2%	0	-	-	-	-	HMMPfam_PDEase_I,superfamily_SSF109604
PDE6A	5145	genome.wustl.edu	37	5	149278013	149278013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000440.2	-1	reviewed	p.M440I	1.000	277	0%	223	43.5%	0	-	benign(0.218)	tolerated(0.47)	neutral(0.033)	HMMSmart_GAF,superfamily_SSF55781
TIGD6	81789	genome.wustl.edu	37	5	149374728	149374728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030953.2	-1	validated	p.D395G	0.005	157	0%	94	41.5%	8	25%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
CD74	972	genome.wustl.edu	37	5	149784247	149784247	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001025159.1	-1	validated	p.P207	0.001	80	0%	35	42.9%	918	0.2%	-	-	-	superfamily_Thyroglobulin type-1 domain,HMMPfam_MHCassoc_trimer,superfamily_Class II MHC-associated invariant chain ectoplasmic trimerization domain
NDST1	3340	genome.wustl.edu	37	5	149919666	149919666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001543.4	+1	validated	p.L530P	1.000	123	0%	49	34.7%	19	47.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SYNPO	11346	genome.wustl.edu	37	5	150027925	150027925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007286.5	+1	validated	p.L30I	0.807	87	0%	43	48.8%	5	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SYNPO	11346	genome.wustl.edu	37	5	150028685	150028685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007286.5	+1	validated	p.R283Q	0.963	42	0%	30	43.3%	1	0%	benign(0.005)	tolerated(0.85)	neutral(0.001)	NULL
ZNF300	91975	genome.wustl.edu	37	5	150275300	150275300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052860.2	-1	reviewed	p.A501S	1.000	190	0%	33	15.2%	0	-	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCDC69	26112	genome.wustl.edu	37	5	150565607	150565607	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015621.2	-1	validated	p.R158	0.990	215	0%	139	48.2%	3	0%	-	-	-	NULL
FAT2	2196	genome.wustl.edu	37	5	150889600	150889600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.H4014R	0.080	133	0%	61	36.1%	0	-	benign(0.273)	tolerated(0.35)	neutral(0.050)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
FAT2	2196	genome.wustl.edu	37	5	150922794	150922794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.D2632Y	0.995	190	0%	80	31.2%	1	100%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150923132	150923132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.T2519N	1.000	140	0%	71	40.8%	0	-	probably_damaging(0.996)	tolerated(0.37)	deleterious(0.481)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150925609	150925609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.E1693D	1.000	126	0%	98	48%	0	-	probably_damaging(0.963)	tolerated(0.38)	neutral(0.423)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150925785	150925785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.Q1635K	1.000	236	0%	75	12%	0	-	probably_damaging(0.958)	tolerated(1)	neutral(0.402)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150929031	150929031	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.F1538	0.997	77	0%	39	20.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150945901	150945901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.E864D	0.986	118	0%	87	43.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150946748	150946748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001447.2	-1	reviewed	p.S582L	0.001	82	0%	115	43.5%	0	-	benign(0.032)	tolerated(0.74)	neutral(0.003)	HMMPfam_Cadherin,superfamily_Cadherin-like
GLRA1	2741	genome.wustl.edu	37	5	151304089	151304089	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000171.3	-1	reviewed	p.R8*	1.000	394	0%	163	40.5%	0	-	-	-	-	NULL
NMUR2	56923	genome.wustl.edu	37	5	151784202	151784202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020167.4	-1	reviewed	p.S158N	1.000	65	0%	28	39.3%	0	-	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM114A2	10827	genome.wustl.edu	37	5	153406023	153406023	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018691.2	-1	validated	p.L283F	1.000	181	0%	57	56.1%	7	42.8%	possibly_damaging(0.885)	deleterious(0.04)	deleterious(0.695)	NULL
FAM114A2	10827	genome.wustl.edu	37	5	153414430	153414430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018691.2	-1	validated	p.K28N	0.909	247	0%	105	42.9%	9	55.5%	benign(0.167)	deleterious(0.03)	neutral(0.380)	NULL
LARP1	23367	genome.wustl.edu	37	5	154193632	154193632	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015315.3	+1	validated	p.S1012	0.601	65	0%	33	48.5%	42	40.4%	-	-	-	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154278114	154278114	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015465.3	-1	validated	p.I1077	0.000	70	0%	22	36.4%	25	52%	-	-	-	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154287276	154287276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015465.3	-1	validated	p.S757L	0.000	377	0%	347	45.5%	12	50%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
KIF4B	285643	genome.wustl.edu	37	5	154394568	154394568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099293.1	+1	provisional	p.E383D	0.697	154	0%	171	37.4%	0	-	benign(0.03)	tolerated(0.26)	neutral(0.036)	NULL
KIF4B	285643	genome.wustl.edu	37	5	154396833	154396833	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099293.1	+1	provisional	p.S1138	0.056	260	0%	160	46.3%	0	-	-	-	-	NULL
TIMD4	91937	genome.wustl.edu	37	5	156349148	156349148	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138379.2	-1	validated	p.F325C	0.054	253	0%	87	46%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
HAVCR1	26762	genome.wustl.edu	37	5	156476060	156476060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099414.1	-1	reviewed	p.S257Y	0.000	934	0%	249	38.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
HAVCR1	26762	genome.wustl.edu	37	5	156479517	156479517	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099414.1	-1	reviewed	p.T176	0.000	844	0%	307	42.7%	0	-	-	-	-	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156515982	156515982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032782.3	-1	validated	p.S228Y	0.414	210	0%	291	42.3%	1	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
SOX30	11063	genome.wustl.edu	37	5	157073788	157073788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178424.1	-1	reviewed	p.R415Q	1.000	183	0%	111	50.5%	0	-	possibly_damaging(0.776)	tolerated(0.1)	deleterious(0.576)	NULL
THG1L	54974	genome.wustl.edu	37	5	157162885	157162885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017872.3	+1	provisional	p.F190L	1.000	66	0%	191	49.7%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thg1
UBLCP1	134510	genome.wustl.edu	37	5	158710265	158710265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145049.3	+1	validated	p.E283*	1.000	185	0%	109	46.8%	18	5.5%	-	-	-	HMMPfam_NIF,superfamily_HAD-like
PWWP2A	114825	genome.wustl.edu	37	5	159521000	159521000	+	Silent	SNP	C	C	T	rs188529751	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130864.1	-1	validated	p.P219	1.000	209	0%	166	14.5%	7	14.2%	-	-	-	NULL
C1QTNF2	114898	genome.wustl.edu	37	5	159776466	159776466	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031908.4	-1	validated	p.C234	0.198	79	0%	50	56%	2	0%	-	-	-	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
ATP10B	23120	genome.wustl.edu	37	5	159996531	159996531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025153.2	-1	validated	p.L1304I	1.000	262	0%	21	42.9%	5	80%	benign(0.032)	tolerated(0.24)	neutral(0.039)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160076231	160076231	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025153.2	-1	validated	p.N236	0.981	270	0%	91	51.6%	3	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
GABRB2	2561	genome.wustl.edu	37	5	160973383	160973383	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021911.2	-1	reviewed	p.E38	1.000	73	0%	102	47.1%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA6	2559	genome.wustl.edu	37	5	161119083	161119083	+	Silent	SNP	C	C	T	rs148840190		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000811.2	+1	reviewed	p.F321	0.981	291	0%	108	48.1%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA1	2554	genome.wustl.edu	37	5	161317931	161317931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000806.5	+1	reviewed	p.F244S	1.000	204	0%	89	37.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA1	2554	genome.wustl.edu	37	5	161324184	161324184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000806.5	+1	reviewed	p.T376S	1.000	135	0%	65	49.2%	0	-	benign(0.058)	tolerated(0.49)	neutral(0.014)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRG2	2566	genome.wustl.edu	37	5	161495013	161495013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198903.2	+1	reviewed	p.S3L	1.000	69	0%	36	47.2%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
GABRG2	2566	genome.wustl.edu	37	5	161520894	161520894	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198903.2	+1	reviewed	p.V56	1.000	299	0%	55	49.1%	0	-	-	-	-	NULL
CCNG1	900	genome.wustl.edu	37	5	162868208	162868208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004060.3	+1	reviewed	p.T130M	1.000	207	0%	157	40.8%	253	55.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
HMMR	3161	genome.wustl.edu	37	5	162891799	162891799	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142556.1	+1	reviewed	p.S72	0.000	198	0%	180	51.7%	15	40%	-	-	-	NULL
HMMR	3161	genome.wustl.edu	37	5	162900204	162900204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142556.1	+1	reviewed	p.K224Q	0.979	74	0%	73	45.2%	16	50%	probably_damaging(0.996)	tolerated(0.27)	deleterious(0.495)	NULL
MAT2B	27430	genome.wustl.edu	37	5	162945236	162945236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013283.3	+1	reviewed	p.R291I	0.375	164	0%	90	37.8%	58	43.1%	benign(0.044)	tolerated(0.33)	neutral(0.026)	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
MAT2B	27430	genome.wustl.edu	37	5	162945299	162945299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013283.3	+1	reviewed	p.R312Q	0.999	227	0%	113	35.4%	65	43%	possibly_damaging(0.844)	tolerated(0.38)	neutral(0.341)	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
ODZ2	57451	genome.wustl.edu	37	5	167303142	167303142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122679.1	+1	inferred	p.F218L	1.000	464	0%	70	47.1%	0	-	benign(0.037)	deleterious(0.01)	neutral(0.408)	HMMPfam_Ten_N
RARS	5917	genome.wustl.edu	37	5	167937606	167937606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002887.3	+1	reviewed	p.S456L	0.998	80	0%	76	46.1%	107	40.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
SLIT3	6586	genome.wustl.edu	37	5	168149967	168149967	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003062.2	-1	validated	p.T794	1.000	185	0%	118	45.8%	1	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
CCDC99	54908	genome.wustl.edu	37	5	169026135	169026135	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017785.4	+1	validated	p.D432E	1.000	42	0%	30	36.7%	30	30%	probably_damaging(0.999)	tolerated(0.52)	deleterious(0.499)	NULL
DOCK2	1794	genome.wustl.edu	37	5	169098091	169098091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004946.2	+1	validated	p.E78D	1.000	161	0%	52	19.2%	0	-	possibly_damaging(0.512)	deleterious(0.05)	deleterious(0.517)	NULL
DOCK2	1794	genome.wustl.edu	37	5	169141087	169141087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004946.2	+1	validated	p.R572Q	1.000	61	0%	21	33.3%	1	0%	probably_damaging(0.987)	tolerated(0.19)	deleterious(0.486)	NULL
FAM196B	100131897	genome.wustl.edu	37	5	169308421	169308421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001129891.1	-1	predicted	p.D458Y	1.000	318	0%	38	42.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM196B	100131897	genome.wustl.edu	37	5	169309749	169309749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001129891.1	-1	predicted	p.R385M	0.002	250	0%	47	44.7%	0	-	benign(0.345)	deleterious(0.01)	deleterious(0.515)	NULL
DOCK2	1794	genome.wustl.edu	37	5	169494647	169494647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004946.2	+1	validated	p.I1534S	1.000	467	0%	100	35%	5	0%	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	NULL
GABRP	2568	genome.wustl.edu	37	5	170216233	170216233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014211.2	+1	reviewed	p.L52I	1.000	138	0%	43	34.9%	5	20%	possibly_damaging(0.754)	tolerated(0.65)	neutral(0.281)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
RANBP17	64901	genome.wustl.edu	37	5	170343498	170343498	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022897.2	+1	provisional	p.S288	1.000	177	0%	35	48.6%	2	0%	-	-	-	superfamily_ARM repeat
FBXW11	23291	genome.wustl.edu	37	5	171295779	171295779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012300.2	-1	reviewed	p.R497W	1.000	174	0.6%	64	29.7%	25	32%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FBXW11	23291	genome.wustl.edu	37	5	171326047	171326047	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012300.2	-1	reviewed	p.F204	1.000	242	0.4%	74	14.9%	17	17.6%	-	-	-	superfamily_F-box domain
DUSP1	1843	genome.wustl.edu	37	5	172197162	172197162	+	Splice_Site	SNP	A	A	G	rs112267987		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004417.3	-1	reviewed	e2+2	1.000	27	0%	12	75%	3	100%	-	-	-	-
RPL26L1	51121	genome.wustl.edu	37	5	172395521	172395521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016093.2	+1	reviewed	p.K76N	1.000	111	0%	66	28.8%	124	42.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_KOW,HMMSmart_SM00739,superfamily_Translation proteins SH3-like domain
CREBRF	153222	genome.wustl.edu	37	5	172517341	172517341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153607.2	+1	validated	p.Q53H	1.000	99	0%	78	33.3%	2	0%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
CREBRF	153222	genome.wustl.edu	37	5	172517849	172517849	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153607.2	+1	validated	p.E223*	0.999	135	0%	87	43.7%	1	0%	-	-	-	NULL
BNIP1	662	genome.wustl.edu	37	5	172573954	172573954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013979.2	+1	reviewed	p.R57I	1.000	69	0%	48	47.9%	11	54.5%	possibly_damaging(0.741)	tolerated(0.12)	deleterious(0.532)	NULL
C5orf47	133491	genome.wustl.edu	37	5	173426715	173426715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144954.1	+1	validated	p.N142D	0.784	209	0%	78	42.3%	0	-	probably_damaging(0.984)	tolerated(0.18)	deleterious(0.486)	NULL
DRD1	1812	genome.wustl.edu	37	5	174869831	174869831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000794.3	-1	reviewed	p.P91H	1.000	93	0%	37	48.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CLTB	1212	genome.wustl.edu	37	5	175819819	175819819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000310418	-1	known	p.R216C	1.000	329	0%	67	50.7%	298	41.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clathrin_lg_ch,PatternScan_CLATHRIN_LIGHT_CHN_2
CDHR2	54825	genome.wustl.edu	37	5	176004534	176004534	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017675.4	+1	reviewed	p.R443	0.000	66	0%	29	48.3%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
GPRIN1	114787	genome.wustl.edu	37	5	176025771	176025771	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052899.2	-1	validated	p.P355	0.020	6	0.000	19	0.263	5	60%	-	-	-	NULL
ZNF346	23567	genome.wustl.edu	37	5	176468873	176468873	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012279.2	+1	reviewed	e3+2	1.000	41	0%	49	36.7%	0	-	-	-	-	-
ZNF346	23567	genome.wustl.edu	37	5	176471435	176471435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012279.2	+1	reviewed	p.N140D	1.000	145	0%	65	60%	16	56.2%	probably_damaging(0.994)	tolerated(0.19)	deleterious(0.502)	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
NSD1	64324	genome.wustl.edu	37	5	176637697	176637697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022455.4	+1	reviewed	p.S766L	0.911	149	0%	84	40.5%	9	55.5%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	NULL
NSD1	64324	genome.wustl.edu	37	5	176700767	176700767	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022455.4	+1	reviewed	p.P1868	0.012	131	0%	106	40.6%	28	46.4%	-	-	-	superfamily_Tudor/PWWP/MBT,superfamily_SET domain
PRELID1	27166	genome.wustl.edu	37	5	176732884	176732884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013237.2	+1	provisional	p.R111*	1.000	191	0%	240	42.1%	188	10.1%	-	-	-	HMMPfam_PRELI
PRELID1	27166	genome.wustl.edu	37	5	176733102	176733102	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013237.2	+1	provisional	p.F146V	1.000	167	0%	228	35.5%	139	0.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PRELI
FAM153C	653316	genome.wustl.edu	37	5	177457621	177457621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000511189	+1	known	p.E10K	0.000	256	0%	179	51.4%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
CLK4	57396	genome.wustl.edu	37	5	178045649	178045649	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020666.2	-1	reviewed	p.R98*	0.509	157	0%	69	56.5%	10	40%	-	-	-	NULL
ZNF354B	117608	genome.wustl.edu	37	5	178309732	178309732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_058230.2	+1	validated	p.M93I	0.001	39	0%	44	40.9%	13	53.8%	benign(0.011)	tolerated(0.33)	neutral(0.025)	NULL
ZFP2	80108	genome.wustl.edu	37	5	178358915	178358915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030613.2	+1	provisional	p.L201F	0.681	61	0%	73	52.1%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178392553	178392553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182594.2	+1	validated	p.P383H	1.000	106	0%	117	35%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178392574	178392574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182594.2	+1	validated	p.G390V	1.000	105	0%	129	42.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GRM6	2916	genome.wustl.edu	37	5	178416330	178416330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000843.3	-1	reviewed	p.E363D	1.000	48	0%	57	40.4%	0	-	benign(0)	tolerated(0.98)	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM6	2916	genome.wustl.edu	37	5	178418532	178418532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000843.3	-1	reviewed	p.K250N	1.000	48	0%	57	36.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_ANF_receptor,superfamily_SSF53822
ZNF879	345462	genome.wustl.edu	37	5	178455038	178455038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136116.1	+1	provisional	p.L56I	0.908	88	0%	70	12.9%	4	25%	unknown(0)	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF879	345462	genome.wustl.edu	37	5	178459520	178459520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136116.1	+1	provisional	p.L191I	0.895	68	0%	96	32.3%	3	0%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	superfamily_C2H2 and C2HC zinc fingers
ZNF879	345462	genome.wustl.edu	37	5	178460262	178460262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136116.1	+1	provisional	p.S438Y	0.045	56	0%	90	41.1%	2	100%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ADAMTS2	9509	genome.wustl.edu	37	5	178540959	178540959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014244.2	-1	reviewed	p.R1182Q	0.904	655	0%	422	41.5%	3	0%	benign(0.059)	tolerated(0.27)	neutral(0.038)	NULL
ENSG00000251657	0	genome.wustl.edu	37	5	178951976	178951976	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000506689	-1	known	NULL	0.003	6	0.000	17	0.588	0	-	-	-	-	-
CANX	821	genome.wustl.edu	37	5	179142899	179142899	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508787	+1	known	e4-1	0.009	11	0%	25	36%	1	100%	-	-	-	-
TBC1D9B	23061	genome.wustl.edu	37	5	179292319	179292319	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198868.2	-1	validated	p.R1003*	0.269	82	0%	89	41.6%	142	29.5%	-	-	-	NULL
TBC1D9B	23061	genome.wustl.edu	37	5	179318572	179318572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198868.2	-1	validated	p.R284Q	0.998	57	0%	24	50%	60	55%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
RNF130	55819	genome.wustl.edu	37	5	179405213	179405213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018434.4	-1	reviewed	p.L280I	0.998	229	0%	132	47%	248	44.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
MIR340	442908	genome.wustl.edu	37	5	179442309	179442309	+	RNA	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000362125	-1	known	NULL	1.000	196	0%	133	46.6%	0	-	-	-	-	-
RASGEF1C	255426	genome.wustl.edu	37	5	179546391	179546391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175062.3	-1	validated	p.E288K	1.000	134	0%	43	41.9%	1	0%	possibly_damaging(0.599)	deleterious(0)	deleterious(0.652)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
FLT4	2324	genome.wustl.edu	37	5	180047230	180047230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182925.4	-1	reviewed	p.E829K	1.000	4	0.000	24	0.333	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
OR2Y1	134083	genome.wustl.edu	37	5	180166292	180166292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001657.1	-1	provisional	p.Y256C	0.000	133	0%	60	50%	0	-	probably_damaging(0.993)	tolerated(0.11)	deleterious(0.722)	HMMPfam_7tm_1,superfamily_SSF81321
ZFP62	643836	genome.wustl.edu	37	5	180276541	180276541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152283.4	-1	validated	p.K592E	1.000	161	0%	136	47.8%	25	52%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR2V2	285659	genome.wustl.edu	37	5	180582705	180582705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206880.1	+1	provisional	p.A255T	0.677	206	0%	108	44.4%	0	-	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_7tm_1,superfamily_SSF81321
IRF4	3662	genome.wustl.edu	37	6	401715	401715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002460.2	+1	validated	p.R346Q	1.000	29	0%	36	63.9%	0	-	benign(0.242)	tolerated(0.29)	neutral(0.054)	superfamily_SMAD/FHA domain,HMMPfam_IRF-3
EXOC2	55770	genome.wustl.edu	37	6	619531	619531	+	Silent	SNP	C	C	T	rs192548095	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018303.4	-1	reviewed	p.S145	0.825	265	0%	213	46.5%	10	60%	-	-	-	NULL
FOXF2	2295	genome.wustl.edu	37	6	1395012	1395012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001452.1	+1	reviewed	p.S418F	1.000	151	0%	225	44%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
GMDS	2762	genome.wustl.edu	37	6	1930454	1930454	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001500.2	-1	validated	p.F218	1.000	190	0.5%	63	50.8%	83	34.9%	-	-	-	HMMPfam_Epimerase,superfamily_NAD(P)-bd
GMDS	2762	genome.wustl.edu	37	6	1961161	1961161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001500.2	-1	validated	p.G129R	1.000	146	0%	51	45.1%	89	38.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Epimerase,superfamily_NAD(P)-bd
MYLK4	340156	genome.wustl.edu	37	6	2685565	2685565	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012418.3	-1	validated	p.F170	0.931	114	0%	34	38.2%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SERPINB9	5272	genome.wustl.edu	37	6	2900754	2900754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004155.4	-1	validated	p.S31Y	1.000	313	0%	90	40%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB6	5269	genome.wustl.edu	37	6	2948924	2948924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004568.4	-1	validated	p.E247*	0.892	135	0%	83	34.9%	74	12.1%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
TUBB2B	347733	genome.wustl.edu	37	6	3225015	3225015	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178012.4	-1	reviewed	p.F436	0.954	35	0%	35	31.4%	2	0%	-	-	-	NULL
FAM50B	26240	genome.wustl.edu	37	6	3850189	3850189	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012135.1	+1	provisional	p.R48	0.998	37	0%	13	61.5%	14	92.8%	-	-	-	NULL
FAM217A	222826	genome.wustl.edu	37	6	4074896	4074896	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173563.1	-1	predicted	e2-1	1.000	64	0%	123	51.2%	0	-	-	-	-	-
CDYL	9425	genome.wustl.edu	37	6	4716006	4716006	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026590.1	+1	reviewed	NULL	0.003	60	0%	65	47.7%	0	-	-	-	-	-
LOC100287622	100287622	genome.wustl.edu	37	6	5999313	5999313	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342600.1	+1	model	p.R76*	1.000	230	0.4%	70	45.7%	21	61.9%	possibly_damaging(0.658)	tolerated(0.06)	deleterious(0.555)	NULL
NRN1	51299	genome.wustl.edu	37	6	6002729	6002729	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016588.2	-1	reviewed	p.A19	0.968	67	0%	18	27.8%	10	50%	-	-	-	NULL
CAGE1	285782	genome.wustl.edu	37	6	7373701	7373701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_205864.2	-1	validated	p.E315*	0.988	271	0%	411	42.6%	0	-	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7571679	7571679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004415.2	+1	reviewed	p.E589*	1.000	123	0%	95	36.8%	4	25%	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7579784	7579784	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004415.2	+1	reviewed	p.E1121*	1.000	79	0%	80	38.8%	7	57.1%	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7579791	7579791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004415.2	+1	reviewed	p.R1123I	0.993	76	0%	78	44.9%	6	50%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	NULL
DSP	1832	genome.wustl.edu	37	6	7584869	7584869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004415.2	+1	reviewed	p.K2458N	0.965	122	0%	116	40.5%	17	64.7%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Plectin,HMMSmart_SM00250
DSP	1832	genome.wustl.edu	37	6	7585737	7585737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004415.2	+1	reviewed	p.E2748K	1.000	38	0%	20	40%	30	56.6%	possibly_damaging(0.941)	deleterious(0.02)	deleterious(0.770)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
BMP6	654	genome.wustl.edu	37	6	7879306	7879306	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001718.4	+1	reviewed	e5-1	1.000	108	0%	88	39.8%	0	-	-	-	-	-
SLC35B3	51000	genome.wustl.edu	37	6	8430112	8430112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142540.1	-1	validated	p.I94M	0.999	58	0%	46	50%	10	70%	benign(0.048)	tolerated(0.07)	neutral(0.322)	HMMPfam_UAA
TFAP2A	7020	genome.wustl.edu	37	6	10410388	10410388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003220.2	-1	reviewed	p.V76I	1.000	53	0%	22	40.9%	0	-	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	NULL
TFAP2A	7020	genome.wustl.edu	37	6	10415208	10415208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003220.2	-1	reviewed	p.K4T	1.000	326	0%	83	43.4%	0	-	benign(0)	-	-	NULL
GCNT2	2651	genome.wustl.edu	37	6	10529868	10529868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145649.4	+1	reviewed	p.S242A	0.661	70	0%	80	31.2%	12	58.3%	benign(0.045)	tolerated(0.51)	neutral(0.011)	HMMPfam_Branch
GCNT2	2651	genome.wustl.edu	37	6	10586680	10586680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145655.3	+1	reviewed	p.A153V	0.977	75	0%	61	39.3%	0	-	benign(0.018)	deleterious(0.02)	neutral(0.384)	HMMPfam_Branch
MAK	4117	genome.wustl.edu	37	6	10770458	10770458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005906.3	-1	reviewed	p.L535I	0.972	204	0%	105	41%	0	-	benign(0.174)	tolerated(0.41)	neutral(0.031)	NULL
MAK	4117	genome.wustl.edu	37	6	10791909	10791909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005906.3	-1	reviewed	p.R439W	0.990	41	0%	38	36.8%	1	0%	possibly_damaging(0.66)	deleterious(0)	deleterious(0.677)	NULL
GCM2	9247	genome.wustl.edu	37	6	10874513	10874513	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004752.3	-1	reviewed	p.S412	0.000	175	0%	93	43%	0	-	-	-	-	NULL
LOC100288888	100288888	genome.wustl.edu	37	6	10882041	10882041	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342614.1	+1	model	p.L165	0.000	28	0.000	6	0.667	0	-	-	-	-	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10912935	10912935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040274.2	+1	validated	p.E316D	0.994	222	0%	116	39.7%	0	-	benign(0.189)	tolerated(0.05)	neutral(0.363)	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10924736	10924736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040274.2	+1	validated	p.E360D	0.000	121	0%	127	37%	0	-	benign(0.003)	tolerated(1)	-	NULL
ADTRP	84830	genome.wustl.edu	37	6	11766569	11766569	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143948.1	-1	validated	p.R128*	0.891	215	0%	79	38%	0	-	-	-	-	HMMPfam_Far-17a_AIG1
TBC1D7	51256	genome.wustl.edu	37	6	13327073	13327073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143964.1	-1	validated	p.R20C	1.000	89	0%	200	40%	33	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ypt/Rab-GAP domain of gyp1p
GFOD1	54438	genome.wustl.edu	37	6	13470205	13470205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033069.2	-1	predicted	p.R103I	0.000	146	0%	165	49.7%	1	100%	unknown(0)	-	-	NULL
GFOD1	54438	genome.wustl.edu	37	6	13470327	13470327	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033069.2	-1	predicted	p.N62	0.000	87	0%	113	44.2%	0	-	-	-	-	NULL
SIRT5	23408	genome.wustl.edu	37	6	13595737	13595737	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012241.3	+1	reviewed	p.S168	1.000	452	0%	384	43.5%	14	28.5%	-	-	-	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
NOL7	51406	genome.wustl.edu	37	6	13618354	13618354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016167.3	+1	provisional	p.Q161H	0.891	81	0%	124	43.5%	173	47.9%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
RANBP9	10048	genome.wustl.edu	37	6	13642738	13642738	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005493.2	-1	reviewed	p.E400*	1.000	161	0%	68	48.5%	15	0%	-	-	-	NULL
RNF182	221687	genome.wustl.edu	37	6	13977624	13977624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152737.3	+1	validated	p.T92P	1.000	206	0%	43	48.8%	0	-	benign(0.208)	tolerated(0.05)	neutral(0.365)	NULL
JARID2	3720	genome.wustl.edu	37	6	15501454	15501454	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004973.2	+1	reviewed	p.F754	0.995	45	0%	16	56.2%	24	45.8%	-	-	-	NULL
JARID2	3720	genome.wustl.edu	37	6	15507580	15507580	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004973.2	+1	reviewed	p.H888	0.303	131	0%	76	28.9%	19	47.3%	-	-	-	HMMSmart_SM00558
CAP2	10486	genome.wustl.edu	37	6	17421882	17421882	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006366.2	+1	reviewed	p.C32	0.176	270	0.7%	73	49.3%	4	0%	-	-	-	HMMPfam_CAP_N
NUP153	9972	genome.wustl.edu	37	6	17637421	17637421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005124.2	-1	reviewed	p.E809D	1.000	122	0%	62	41.9%	31	41.9%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1
NUP153	9972	genome.wustl.edu	37	6	17637957	17637957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005124.2	-1	reviewed	p.A631T	0.369	248	0%	101	47.5%	23	21.7%	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_Nup153
NUP153	9972	genome.wustl.edu	37	6	17706608	17706608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005124.2	-1	reviewed	p.G4E	0.971	21	0%	16	56.2%	2	50%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
KIF13A	63971	genome.wustl.edu	37	6	17780964	17780964	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000358380	-1	known	p.N675S	0.695	190	0%	182	47.3%	9	33.3%	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17797027	17797027	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022113.4	-1	validated	p.E939*	1.000	88	0%	34	38.2%	2	0%	-	-	-	NULL
KDM1B	221656	genome.wustl.edu	37	6	18197817	18197817	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153042.3	+1	validated	e8-1	1.000	87	0%	116	49.1%	0	-	-	-	-	-
DEK	7913	genome.wustl.edu	37	6	18226453	18226453	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003472.3	-1	reviewed	p.T356	1.000	41	0%	101	50.5%	143	50.3%	-	-	-	HMMPfam_DEK_C,superfamily_DEK C-terminal domain
DEK	7913	genome.wustl.edu	37	6	18249888	18249888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003472.3	-1	reviewed	p.E252D	1.000	87	0%	252	47.6%	146	41%	unknown(0)	tolerated(0.58)	-	NULL
PRL	5617	genome.wustl.edu	37	6	22287740	22287740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000948.4	-1	validated	p.R192H	0.241	242	0%	142	46.5%	0	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_Hormone_1,superfamily_4-helical cytokines
GPLD1	2822	genome.wustl.edu	37	6	24467453	24467453	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001503.2	-1	reviewed	p.R199*	0.004	203	0%	165	45.5%	0	-	-	-	-	NULL
GPLD1	2822	genome.wustl.edu	37	6	24473820	24473820	+	Missense_Mutation	SNP	A	A	C	rs112936717		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177483.1	-1	reviewed	p.F173V	0.000	115	0%	105	41.9%	0	-	possibly_damaging(0.782)	tolerated(0.14)	deleterious(0.542)	NULL
FAM65B	9750	genome.wustl.edu	37	6	24843448	24843448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014722.2	-1	validated	p.R521Q	0.005	254	0%	117	42.7%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
SCGN	10590	genome.wustl.edu	37	6	25701477	25701477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006998.3	+1	reviewed	p.L249I	1.000	251	0%	61	52.5%	0	-	benign(0.252)	tolerated(1)	neutral(0.026)	HMMSmart_SM00054,superfamily_EF-hand
SLC17A3	10786	genome.wustl.edu	37	6	25862484	25862484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098486.1	-1	validated	p.A94S	0.000	136	0%	35	11.4%	0	-	probably_damaging(0.974)	tolerated(0.84)	neutral(0.416)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC17A2	10246	genome.wustl.edu	37	6	25921430	25921430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005835.2	-1	validated	p.R151W	0.691	242	0%	117	49.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HIST1H2BB	3018	genome.wustl.edu	37	6	26043673	26043673	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021062.2	-1	reviewed	p.F71	1.000	356	0%	162	46.9%	0	-	-	-	-	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2AE	3012	genome.wustl.edu	37	6	26217493	26217493	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021052.2	+1	reviewed	p.L97	1.000	183	0%	56	41.1%	7	71.4%	-	-	-	HMMSmart_SM00414,superfamily_Histone-fold
BTN2A2	10385	genome.wustl.edu	37	6	26390390	26390390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006995.3	+1	reviewed	p.K294N	0.001	275	0%	187	49.2%	8	62.5%	benign(0.007)	tolerated(0.45)	neutral(0.012)	NULL
BTN3A3	10384	genome.wustl.edu	37	6	26445941	26445941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006994.4	+1	validated	p.S148Y	0.863	193	0%	101	51.5%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48726
ZNF322	79692	genome.wustl.edu	37	6	26638262	26638262	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024639.3	-1	validated	p.R174*	1.000	361	0%	173	13.9%	5	60%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PRSS16	10279	genome.wustl.edu	37	6	27220721	27220721	+	Silent	SNP	C	C	T	rs191407230	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000475106	+1	known	p.R160W	0.983	288	0%	85	44.7%	8	37.5%	-	-	-	HMMPfam_Peptidase_S28
POM121L2	94026	genome.wustl.edu	37	6	27279091	27279091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000444565	-1	known	p.K287Q	0.075	105	0%	81	45.7%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
POM121L2	94026	genome.wustl.edu	37	6	27279369	27279369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000444565	-1	known	p.S194L	0.005	248	0%	118	28.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF391	346157	genome.wustl.edu	37	6	27368259	27368259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076781.1	+1	validated	p.S37Y	0.080	152	0%	82	45.1%	2	0%	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	NULL
ZNF165	7718	genome.wustl.edu	37	6	28056407	28056407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003447.3	+1	reviewed	p.R206I	0.031	42	0%	60	58.3%	7	57.1%	possibly_damaging(0.677)	tolerated(0.06)	deleterious(0.564)	NULL
ZNF165	7718	genome.wustl.edu	37	6	28056527	28056527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003447.3	+1	reviewed	p.R246I	0.000	62	0%	71	50.7%	11	63.6%	benign(0.121)	tolerated(0.4)	neutral(0.026)	NULL
ZNF165	7718	genome.wustl.edu	37	6	28056533	28056533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003447.3	+1	reviewed	p.S248L	0.063	63	0%	74	41.9%	11	36.3%	possibly_damaging(0.494)	tolerated(0.42)	neutral(0.179)	NULL
PGBD1	84547	genome.wustl.edu	37	6	28269816	28269816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032507.3	+1	reviewed	p.V729L	0.736	259	0%	59	45.8%	2	0%	possibly_damaging(0.636)	deleterious(0.01)	deleterious(0.628)	NULL
ZSCAN12	9753	genome.wustl.edu	37	6	28359154	28359154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000361028	-1	known	p.E305K	0.001	358	0%	114	48.2%	1	100%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZSCAN12	9753	genome.wustl.edu	37	6	28366171	28366171	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000361028	-1	known	p.T4	0.306	144	0%	163	41.1%	0	-	-	-	-	NULL
SCAND3	114821	genome.wustl.edu	37	6	28540923	28540923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052923.1	-1	provisional	p.L915I	1.000	109	0.9%	73	45.2%	2	50%	benign(0.388)	deleterious(0.01)	deleterious(0.530)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28541039	28541039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052923.1	-1	provisional	p.R876Q	1.000	188	0%	105	44.8%	0	-	possibly_damaging(0.867)	tolerated(0.07)	deleterious(0.655)	NULL
OR2J3	442186	genome.wustl.edu	37	6	29080183	29080183	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005216.2	+1	validated	p.C172	0.157	103	0%	29	51.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR12D3	81797	genome.wustl.edu	37	6	29236373	29236373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000396806	-1	known	p.L272I	0.000	33	0%	15	53.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR12D3	81797	genome.wustl.edu	37	6	29236405	29236405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000396806	-1	known	p.G261E	0.002	44	0%	17	52.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5V1	81696	genome.wustl.edu	37	6	29323536	29323536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030876.5	-1	validated	p.A146V	0.001	113	0%	19	57.9%	0	-	possibly_damaging(0.572)	tolerated(1)	neutral(0.196)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GABBR1	2550	genome.wustl.edu	37	6	29580340	29580340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001470.2	-1	reviewed	p.E540K	1.000	130	0%	45	48.9%	2	100%	possibly_damaging(0.868)	tolerated(0.38)	neutral(0.355)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GABBR1	2550	genome.wustl.edu	37	6	29589891	29589891	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001470.2	-1	reviewed	p.K352T	1.000	106	0%	59	45.8%	2	0%	benign(0.378)	tolerated(0.1)	neutral(0.407)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
PPP1R10	5514	genome.wustl.edu	37	6	30574312	30574312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002714.2	-1	reviewed	p.E189D	1.000	122	0%	54	48.1%	35	57.1%	benign(0.004)	tolerated(0.43)	neutral(0.013)	NULL
MDC1	9656	genome.wustl.edu	37	6	30672794	30672794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014641.2	-1	reviewed	p.S1389Y	0.000	191	0%	172	48.8%	8	37.5%	benign(0.019)	deleterious(0.03)	neutral(0.365)	NULL
DPCR1	135656	genome.wustl.edu	37	6	30919216	30919216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000462446	+1	known	p.E992A	0.000	853	0%	311	45.7%	0	-	probably_damaging(0.977)	tolerated(0.59)	neutral(0.423)	NULL
HLA-B	3106	genome.wustl.edu	37	6	31324474	31324474	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005514.6	-1	reviewed	p.S112R	1.000	32	0%	17	70.6%	184	1%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
TNXB	7148	genome.wustl.edu	37	6	32056669	32056669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019105.6	-1	reviewed	p.D891G	0.053	81	0%	33	12.1%	0	-	possibly_damaging(0.86)	tolerated(0.18)	neutral(0.389)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
HLA-DQA1	3117	genome.wustl.edu	37	6	32609159	32609159	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002122.3	+1	reviewed	p.F52C	0.999	413	0%	107	46.7%	69	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MHC_II_alpha,superfamily_MHC_I/II-like_Ag-recog
PSMB8	5696	genome.wustl.edu	37	6	32808814	32808814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148919.3	-1	reviewed	p.M251I	1.000	188	0%	102	38.2%	30	3.3%	benign(0.006)	tolerated(0.59)	neutral(0.004)	HMMPfam_Proteasome,superfamily_SSF56235
PSMB9	5698	genome.wustl.edu	37	6	32827297	32827297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002800.4	+1	reviewed	p.F216L	1.000	394	0.3%	110	40.9%	31	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
TAPBP	6892	genome.wustl.edu	37	6	33272136	33272136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003190.4	-1	reviewed	p.R383Q	0.885	40	0%	21	57.1%	56	39.2%	probably_damaging(1)	tolerated(0.35)	deleterious(0.520)	HMMPfam_C1-set,superfamily_SSF48726
MLN	4295	genome.wustl.edu	37	6	33766893	33766893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002418.2	-1	reviewed	p.E75K	0.000	170	0%	252	48.8%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Motilin_assoc
UHRF1BP1	54887	genome.wustl.edu	37	6	34826285	34826285	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017754.3	+1	validated	p.F718V	1.000	125	0%	92	47.8%	4	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANKS1A	23294	genome.wustl.edu	37	6	34952894	34952894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015245.2	+1	validated	p.D350Y	0.982	177	0%	81	44.4%	3	0%	possibly_damaging(0.562)	deleterious(0.01)	deleterious(0.598)	NULL
ZNF76	7629	genome.wustl.edu	37	6	35258428	35258428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003427.3	+1	provisional	p.R187Q	1.000	149	0%	52	53.8%	28	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LHFPL5	222662	genome.wustl.edu	37	6	35773722	35773722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182548.3	+1	reviewed	p.R92I	0.880	225	0%	117	17.9%	0	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMPfam_L_HGMIC_fpl
SLC26A8	116369	genome.wustl.edu	37	6	35927290	35927290	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052961.2	-1	reviewed	p.G604*	0.000	152	0%	96	41.7%	0	-	-	-	-	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
MAPK14	1432	genome.wustl.edu	37	6	36063827	36063827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139012.2	+1	reviewed	p.K249T	1.000	373	0%	242	46.3%	10	30%	benign(0.182)	tolerated(0.44)	neutral(0.029)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PNPLA1	285848	genome.wustl.edu	37	6	36275459	36275459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145716.1	+1	validated	p.S436L	0.000	100	0%	85	51.8%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
C6orf222	389384	genome.wustl.edu	37	6	36287346	36287346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010903.4	-1	validated	p.F570L	0.310	80	0%	50	52%	0	-	benign(0.004)	tolerated(0.62)	neutral(0.004)	NULL
PI16	221476	genome.wustl.edu	37	6	36929307	36929307	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153370.2	+1	validated	p.I158	0.050	69	0%	53	47.2%	0	-	-	-	-	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
RNF8	9025	genome.wustl.edu	37	6	37336764	37336764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003958.3	+1	reviewed	p.F249L	0.139	98	0%	60	46.7%	40	37.5%	benign(0.009)	tolerated(0.11)	neutral(0.272)	NULL
ZFAND3	60685	genome.wustl.edu	37	6	38029538	38029538	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000373389	+1	known	p.E71K	0.845	135	0%	42	47.6%	45	51.1%	-	-	-	NULL
BTBD9	114781	genome.wustl.edu	37	6	38312862	38312862	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099272.1	-1	reviewed	p.R388*	1.000	114	0%	82	45.1%	1	100%	-	-	-	HMMPfam_F5_F8_type_C,superfamily_Gal_bind_like
DNAH8	1769	genome.wustl.edu	37	6	38704975	38704975	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.E82*	1.000	184	0%	65	53.8%	0	-	-	-	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38750909	38750909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.H580Y	0.971	272	0%	38	57.9%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38805718	38805718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.A1239T	1.000	429	0%	162	33.3%	0	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38810249	38810249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.K1307N	1.000	239	0%	98	45.9%	0	-	benign(0.212)	tolerated(0.27)	neutral(0.054)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38813482	38813482	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.E1443*	0.993	176	0%	94	55.3%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38818089	38818089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.E1537D	1.000	215	0%	62	37.1%	0	-	possibly_damaging(0.523)	tolerated(0.2)	neutral(0.225)	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38825477	38825477	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.I1756L	1.000	289	0%	184	11.4%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38881726	38881726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.E3104K	1.000	267	0%	85	40%	0	-	benign(0)	tolerated(0.91)	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38903405	38903405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.V3615A	1.000	96	0%	100	37%	0	-	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38950135	38950135	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001371.2	+1	validated	p.F4066C	1.000	390	0%	153	47.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
KCNK17	89822	genome.wustl.edu	37	6	39271779	39271779	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031460.3	-1	reviewed	p.F214	0.946	154	0%	35	57.1%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
KCNK16	83795	genome.wustl.edu	37	6	39282878	39282878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032115.3	-1	reviewed	p.A277V	0.000	87	0%	122	45.1%	0	-	unknown(0)	tolerated(0.15)	-	NULL
KCNK16	83795	genome.wustl.edu	37	6	39284593	39284593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135105.1	-1	reviewed	p.T209I	1.000	48	0%	20	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_SSF81324
KCNK16	83795	genome.wustl.edu	37	6	39290201	39290201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135105.1	-1	reviewed	p.A39V	0.994	32	0%	10	50%	0	-	possibly_damaging(0.77)	tolerated(0.58)	neutral(0.291)	superfamily_SSF81324
TREML2	79865	genome.wustl.edu	37	6	41168911	41168911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000373108	-1	known	p.G5S	0.946	75	0%	31	29%	0	-	-	-	-	NULL
TRERF1	55809	genome.wustl.edu	37	6	42231146	42231146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033502.2	-1	reviewed	p.S599Y	0.885	92	0%	38	31.6%	0	-	possibly_damaging(0.832)	tolerated(0.19)	neutral(0.366)	NULL
UBR2	23304	genome.wustl.edu	37	6	42541552	42541552	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015255.2	+1	reviewed	p.G53	0.967	127	0%	76	44.7%	2	50%	-	-	-	NULL
UBR2	23304	genome.wustl.edu	37	6	42607986	42607986	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015255.2	+1	reviewed	p.K633T	1.000	253	0%	169	45%	9	66.6%	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
KIAA0240	23506	genome.wustl.edu	37	6	42797069	42797069	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015349.1	+1	validated	p.I333S	0.997	159	0%	106	46.2%	3	66.6%	benign(0.039)	deleterious(0)	neutral(0.447)	NULL
LOC100287530	100287530	genome.wustl.edu	37	6	42891948	42891948	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342598.1	-1	model	p.S75	0.000	28	0%	27	33.3%	0	-	-	-	-	NULL
PPP2R5D	5528	genome.wustl.edu	37	6	42974719	42974719	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000470467	+1	known	p.R51C	0.911	80	0%	80	47.5%	64	46.8%	-	-	-	HMMPfam_B56
RRP36	88745	genome.wustl.edu	37	6	42996900	42996900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033112.2	+1	provisional	p.F238L	1.000	60	0%	39	33.3%	124	51.6%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_DUF947
SLC22A7	10864	genome.wustl.edu	37	6	43268934	43268934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153320.2	+1	reviewed	p.Y297H	0.900	315	0%	118	56.8%	0	-	benign(0.016)	tolerated(0.19)	neutral(0.050)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZNF318	24149	genome.wustl.edu	37	6	43316087	43316087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014345.2	-1	validated	p.S1016L	0.005	393	0%	196	48.5%	5	80%	possibly_damaging(0.923)	deleterious(0.01)	deleterious(0.778)	NULL
RSPH9	221421	genome.wustl.edu	37	6	43638717	43638717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000372165	+1	known	p.R305K	0.000	33	0%	26	38.5%	1	0%	unknown(0)	-	-	NULL
NFKBIE	4794	genome.wustl.edu	37	6	44228214	44228214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004556.2	-1	validated	p.R391W	0.989	186	0%	145	42.8%	18	22.2%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SPATS1	221409	genome.wustl.edu	37	6	44337803	44337803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145026.3	+1	validated	p.K237N	0.992	141	0%	308	43.8%	0	-	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	NULL
RUNX2	860	genome.wustl.edu	37	6	45399653	45399653	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024630.3	+1	reviewed	p.N228fs	0.998	-	-	-	-	-	-	-	-	-	superfamily_P53_like_DNA_bnd,HMMPfam_Runt
RCAN2	10231	genome.wustl.edu	37	6	46293151	46293151	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005822.2	-1	validated	p.V22	1.000	150	0%	63	31.7%	1	0%	-	-	-	HMMPfam_Calcipressin
TDRD6	221400	genome.wustl.edu	37	6	46661708	46661708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010870.2	+1	validated	p.S1948Y	0.058	250	0%	129	45.7%	0	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
PLA2G7	7941	genome.wustl.edu	37	6	46684166	46684166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005084.3	-1	reviewed	p.L111I	0.999	350	0%	153	49%	1	0%	possibly_damaging(0.803)	tolerated(0.11)	deleterious(0.574)	HMMPfam_PAF-AH_p_II,superfamily_SSF53474
MEP1A	4224	genome.wustl.edu	37	6	46787435	46787435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005588.2	+1	validated	p.L184I	0.002	683	0%	82	43.9%	0	-	benign(0.004)	tolerated(0.62)	neutral(0.004)	HMMPfam_Astacin,HMMSmart_ZnMc,superfamily_SSF55486
GPR116	221395	genome.wustl.edu	37	6	46824603	46824603	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098518.1	-1	validated	e17+1	1.000	150	0%	148	39.9%	0	-	-	-	-	-
GPR116	221395	genome.wustl.edu	37	6	46839601	46839601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098518.1	-1	validated	p.K464Q	0.304	399	0%	85	47.1%	0	-	benign(0.004)	tolerated(0.21)	neutral(0.044)	superfamily_Immunoglobulin
GPR110	266977	genome.wustl.edu	37	6	46988506	46988506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153840.2	-1	validated	p.R191I	0.006	277	0%	94	36.2%	0	-	possibly_damaging(0.806)	tolerated(0.05)	deleterious(0.649)	HMMPfam_SEA,superfamily_SEA domain
TNFRSF21	27242	genome.wustl.edu	37	6	47251903	47251903	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014452.3	-1	reviewed	p.Q338	0.994	229	0%	126	45.2%	27	51.8%	-	-	-	NULL
GPR111	222611	genome.wustl.edu	37	6	47649914	47649914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153839.6	+1	validated	p.A472V	0.989	203	0.5%	67	37.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_2
GPR115	221393	genome.wustl.edu	37	6	47682676	47682676	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153838.3	+1	validated	p.P565	0.995	169	0%	78	43.6%	0	-	-	-	-	HMMPfam_7tm_2
PTCHD4	442213	genome.wustl.edu	37	6	47846512	47846512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013732.3	-1	validated	p.L673I	1.000	128	0%	37	45.9%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Patched,superfamily_SSF82866
PTCHD4	442213	genome.wustl.edu	37	6	47846660	47846660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013732.3	-1	validated	p.F623L	1.000	136	0%	39	43.6%	0	-	possibly_damaging(0.559)	tolerated(0.34)	neutral(0.213)	HMMPfam_Patched,superfamily_SSF82866
PTCHD4	442213	genome.wustl.edu	37	6	47846804	47846804	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013732.3	-1	validated	p.I575	1.000	114	0%	33	48.5%	0	-	-	-	-	HMMPfam_Patched
CENPQ	55166	genome.wustl.edu	37	6	49456143	49456143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018132.3	+1	validated	p.L186M	0.018	77	0%	93	58.1%	16	37.5%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
CRISP2	7180	genome.wustl.edu	37	6	49660590	49660590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142407.1	-1	validated	p.L210I	0.004	187	0%	44	50%	0	-	benign(0.012)	tolerated(0.18)	neutral(0.057)	HMMPfam_Crisp
TFAP2D	83741	genome.wustl.edu	37	6	50683133	50683133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172238.3	+1	validated	p.N115S	1.000	371	0%	101	35.6%	0	-	benign(0.253)	tolerated(0.45)	neutral(0.038)	NULL
EFHC1	114327	genome.wustl.edu	37	6	52343939	52343939	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018100.3	+1	reviewed	p.I461	1.000	216	0%	58	43.1%	15	60%	-	-	-	HMMSmart_SM00676,HMMPfam_DUF1126
EFHC1	114327	genome.wustl.edu	37	6	52355035	52355035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018100.3	+1	reviewed	p.R580C	0.001	225	0%	61	49.2%	19	42.1%	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_efhand,superfamily_EF-hand
TRAM2	9697	genome.wustl.edu	37	6	52368059	52368059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012288.3	-1	reviewed	p.E350A	1.000	172	0%	166	44%	5	40%	probably_damaging(0.982)	tolerated(0.14)	deleterious(0.676)	NULL
ICK	22858	genome.wustl.edu	37	6	52876592	52876592	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014920.3	-1	reviewed	p.Y489*	1.000	96	0%	37	45.9%	11	27.2%	-	-	-	NULL
LRRC1	55227	genome.wustl.edu	37	6	53764614	53764614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018214.4	+1	validated	p.E238*	1.000	271	0%	248	41.1%	13	15.3%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
LRRC1	55227	genome.wustl.edu	37	6	53778706	53778706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018214.4	+1	validated	p.R349W	1.000	73	0%	19	42.1%	16	18.7%	probably_damaging(0.991)	tolerated(0.18)	deleterious(0.500)	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
MLIP	90523	genome.wustl.edu	37	6	53989351	53989351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138569.2	+1	validated	p.E100D	0.004	103	0%	43	39.5%	0	-	benign(0.021)	tolerated(0.08)	neutral(0.301)	NULL
TINAG	27283	genome.wustl.edu	37	6	54191636	54191636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014464.3	+1	validated	p.M182I	1.000	203	0%	77	51.9%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	superfamily_Cysteine proteinases
TINAG	27283	genome.wustl.edu	37	6	54212284	54212284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014464.3	+1	validated	p.D290N	0.997	165	0.6%	19	31.6%	0	-	possibly_damaging(0.494)	deleterious(0.01)	deleterious(0.570)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
HCRTR2	3062	genome.wustl.edu	37	6	55128616	55128616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001526.3	+1	reviewed	p.R253Q	1.000	134	0%	52	50%	0	-	benign(0.004)	tolerated(0.4)	neutral(0.016)	HMMPfam_7tm_1,superfamily_SSF81321
HCRTR2	3062	genome.wustl.edu	37	6	55145210	55145210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001526.3	+1	reviewed	p.A358V	1.000	325	0%	116	50%	0	-	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_7tm_1,superfamily_SSF81321
HCRTR2	3062	genome.wustl.edu	37	6	55147036	55147036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001526.3	+1	reviewed	p.E373D	1.000	89	0%	30	36.7%	0	-	benign(0.096)	tolerated(0.12)	neutral(0.268)	superfamily_SSF81321
GFRAL	389400	genome.wustl.edu	37	6	55223712	55223712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207410.2	+1	validated	p.K243T	0.986	215	0%	17	52.9%	0	-	probably_damaging(0.976)	tolerated(0.15)	deleterious(0.659)	HMMPfam_GDNF,superfamily_SSF110035
BMP5	653	genome.wustl.edu	37	6	55638996	55638996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021073.2	-1	reviewed	p.G293E	1.000	224	0%	41	41.5%	0	-	possibly_damaging(0.881)	deleterious(0.05)	deleterious(0.689)	HMMPfam_TGFb_propeptide
COL21A1	81578	genome.wustl.edu	37	6	55924986	55924986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030820.3	-1	reviewed	p.R813I	1.000	77	0%	20	60%	2	50%	benign(0.019)	tolerated(0.2)	neutral(0.050)	NULL
COL21A1	81578	genome.wustl.edu	37	6	56032933	56032933	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030820.3	-1	reviewed	p.E397*	1.000	171	0%	82	53.7%	3	33.3%	-	-	-	HMMSmart_SM00210
COL21A1	81578	genome.wustl.edu	37	6	56033044	56033044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030820.3	-1	reviewed	p.D360Y	0.917	176	0%	77	53.2%	2	100%	benign(0.029)	tolerated(0.06)	neutral(0.324)	HMMSmart_SM00210
COL21A1	81578	genome.wustl.edu	37	6	56035610	56035610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030820.3	-1	reviewed	p.R288I	1.000	128	0%	129	34.9%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00210
COL21A1	81578	genome.wustl.edu	37	6	56044911	56044911	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030820.3	-1	reviewed	p.P35	0.352	66	0%	28	35.7%	1	0%	-	-	-	HMMSmart_SM00327,superfamily_vWA-like
DST	667	genome.wustl.edu	37	6	56330936	56330936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015548.4	-1	reviewed	p.R4920C	1.000	236	0%	83	38.6%	134	32%	probably_damaging(1)	-	-	HMMPfam_GAS2,HMMSmart_SM00243
DST	667	genome.wustl.edu	37	6	56340980	56340980	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015548.4	-1	reviewed	p.I4654	0.550	224	0%	80	55%	53	66%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150
DST	667	genome.wustl.edu	37	6	56401726	56401726	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015548.4	-1	reviewed	p.E2918*	1.000	208	0%	105	35.2%	13	23%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150
DST	667	genome.wustl.edu	37	6	56464965	56464965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015548.4	-1	reviewed	p.L1243I	1.000	259	0%	68	39.7%	0	-	probably_damaging(0.979)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56469027	56469027	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000370769	-1	known	p.E3256*	0.958	88	0%	44	31.8%	0	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56481246	56481246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001723.5	-1	reviewed	p.S2340Y	0.998	113	0%	66	42.4%	1	100%	benign(0.016)	deleterious(0.01)	neutral(0.406)	HMMPfam_Plectin,HMMSmart_PLEC
DST	667	genome.wustl.edu	37	6	56765400	56765400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000370754	-1	known	p.R79Q	0.994	47	0%	59	47.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
PHF3	23469	genome.wustl.edu	37	6	64408241	64408241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015153.2	+1	provisional	p.D937Y	1.000	78	0%	43	41.9%	11	45.4%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
PHF3	23469	genome.wustl.edu	37	6	64422254	64422254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015153.2	+1	provisional	p.E1590D	0.716	75	0%	34	32.4%	26	69.2%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
EYS	346007	genome.wustl.edu	37	6	64436444	64436444	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142800.1	-1	reviewed	p.F2734C	1.000	102	0%	51	41.2%	0	-	probably_damaging(0.997)	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EYS	346007	genome.wustl.edu	37	6	64694365	64694365	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398580	-1	known	p.S94L	0.716	232	0%	27	40.7%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65301089	65301089	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142800.1	-1	reviewed	p.A1557	1.000	66	0%	10	40%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65622436	65622436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142800.1	-1	reviewed	p.R861I	0.978	155	0%	93	40.9%	0	-	possibly_damaging(0.681)	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
EYS	346007	genome.wustl.edu	37	6	65622579	65622579	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142800.1	-1	reviewed	p.C813	1.000	126	0%	73	42.5%	0	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
EYS	346007	genome.wustl.edu	37	6	66005878	66005878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142800.1	-1	reviewed	p.R634I	0.001	286	0%	33	45.5%	0	-	unknown(0)	-	-	NULL
BAI3	577	genome.wustl.edu	37	6	69348730	69348730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001704.2	+1	reviewed	p.C55R	1.000	74	0%	97	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BAI3	577	genome.wustl.edu	37	6	69949041	69949041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001704.2	+1	reviewed	p.I913L	1.000	211	0%	44	40.9%	0	-	benign(0.34)	deleterious(0)	deleterious(0.552)	HMMPfam_7tm_2
BAI3	577	genome.wustl.edu	37	6	70042872	70042872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001704.2	+1	reviewed	p.L1054I	1.000	218	0%	94	38.3%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_7tm_2
BAI3	577	genome.wustl.edu	37	6	70071009	70071009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001704.2	+1	reviewed	p.Y1282H	1.000	100	0%	20	40%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BAI3	577	genome.wustl.edu	37	6	70071364	70071364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001704.2	+1	reviewed	p.R1400I	1.000	126	0%	26	38.5%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
BAI3	577	genome.wustl.edu	37	6	70098650	70098650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001704.2	+1	reviewed	p.Y1479C	1.000	234	0%	38	42.1%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
LMBRD1	55788	genome.wustl.edu	37	6	70451712	70451712	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018368.3	-1	reviewed	p.V177	1.000	120	0%	166	47.6%	12	50%	-	-	-	HMMPfam_LMBR1
COL19A1	1310	genome.wustl.edu	37	6	70608916	70608916	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001858.4	+1	reviewed	e2+2	1.000	77	0%	120	40%	0	-	-	-	-	-
COL19A1	1310	genome.wustl.edu	37	6	70916862	70916862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001858.4	+1	reviewed	p.P1105T	1.000	37	0%	18	55.6%	0	-	probably_damaging(0.959)	tolerated(0.52)	neutral(0.411)	NULL
COL9A1	1297	genome.wustl.edu	37	6	70993224	70993224	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000370499	-1	known	p.E262*	0.000	18	0%	20	45%	0	-	-	-	-	NULL
COL9A1	1297	genome.wustl.edu	37	6	71004007	71004007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001851.4	-1	reviewed	p.V187M	0.996	137	0%	45	46.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL9A1	1297	genome.wustl.edu	37	6	71004056	71004056	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001851.4	-1	reviewed	p.S170	0.028	111	0%	48	45.8%	0	-	-	-	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL9A1	1297	genome.wustl.edu	37	6	71004213	71004213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001851.4	-1	reviewed	p.R118Q	1.000	110	0%	51	56.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL9A1	1297	genome.wustl.edu	37	6	71011774	71011774	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001851.4	-1	reviewed	p.K6N	1.000	68	0%	36	11.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71234323	71234323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000418814	+1	known	p.Q512H	1.000	29	0%	26	38.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SMAP1	60682	genome.wustl.edu	37	6	71464750	71464750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001044305.1	+1	reviewed	p.R107Q	1.000	78	0%	38	42.1%	35	42.8%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
RIMS1	22999	genome.wustl.edu	37	6	72806727	72806727	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014989.4	+1	reviewed	p.G107	0.221	228	0%	77	41.6%	0	-	-	-	-	superfamily_FYVE/PHD zinc finger
RIMS1	22999	genome.wustl.edu	37	6	72889594	72889594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014989.4	+1	reviewed	p.S263Y	1.000	18	0%	38	57.9%	0	-	possibly_damaging(0.819)	tolerated(0.05)	deleterious(0.655)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72892850	72892850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014989.4	+1	reviewed	p.K559R	1.000	6	0.000	7	0.571	0	-	probably_damaging(0.971)	tolerated(0.38)	neutral(0.430)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72960724	72960724	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014989.4	+1	reviewed	p.E825*	1.000	141	0.7%	77	37.7%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RIMS1	22999	genome.wustl.edu	37	6	72961033	72961033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014989.4	+1	reviewed	p.R887Q	1.000	97	0%	27	51.9%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
RIMS1	22999	genome.wustl.edu	37	6	72962530	72962530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014989.4	+1	reviewed	p.P922H	1.000	344	0%	54	31.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73787128	73787128	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019842.3	+1	reviewed	p.L234I	1.000	210	0%	58	41.4%	0	-	possibly_damaging(0.895)	tolerated(0.22)	neutral(0.395)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
DDX43	55510	genome.wustl.edu	37	6	74118991	74118991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018665.2	+1	reviewed	p.K400N	0.988	223	0%	230	45.2%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	PatternScan_DEAD_ATP_HELICASE,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
COL12A1	1303	genome.wustl.edu	37	6	75797452	75797452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004370.5	-1	reviewed	p.E3008K	1.000	147	0%	62	37.1%	38	18.4%	unknown(0)	-	-	NULL
COL12A1	1303	genome.wustl.edu	37	6	75864236	75864236	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004370.5	-1	reviewed	p.K1154T	1.000	124	0%	30	23.3%	4	50%	benign(0.001)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75899393	75899393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004370.5	-1	reviewed	p.R178I	1.000	140	0%	45	48.9%	1	0%	probably_damaging(1)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
TMEM30A	55754	genome.wustl.edu	37	6	75965984	75965984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018247.3	-1	validated	p.R307Q	1.000	121	0%	52	32.7%	137	43.7%	possibly_damaging(0.727)	tolerated(0.21)	neutral(0.308)	HMMPfam_CDC50
FILIP1	27145	genome.wustl.edu	37	6	76023855	76023855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015687.2	-1	validated	p.V565L	1.000	311	0%	187	39%	5	80%	benign(0.071)	tolerated(0.2)	neutral(0.054)	NULL
FILIP1	27145	genome.wustl.edu	37	6	76024398	76024398	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015687.2	-1	validated	p.R384*	1.000	403	0%	228	44.7%	7	42.8%	-	-	-	HMMPfam_CortBP2
FILIP1	27145	genome.wustl.edu	37	6	76072502	76072502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015687.2	-1	validated	p.E136D	0.923	80	0%	63	33.3%	4	75%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_CortBP2
SENP6	26054	genome.wustl.edu	37	6	76343433	76343433	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015571.2	+1	validated	p.K115T	1.000	42	0%	37	40.5%	27	51.8%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
MYO6	4646	genome.wustl.edu	37	6	76558136	76558136	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004999.3	+1	reviewed	p.T322	0.983	177	0%	98	44.9%	25	52%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PHIP	55023	genome.wustl.edu	37	6	79665344	79665344	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017934.5	-1	validated	p.L1280V	0.160	68	0%	70	50%	9	44.4%	possibly_damaging(0.72)	tolerated(0.5)	neutral(0.271)	superfamily_Bromodomain
LCA5	167691	genome.wustl.edu	37	6	80202352	80202352	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122769.2	-1	reviewed	p.E291*	1.000	72	0%	101	38.6%	0	-	-	-	-	NULL
TTK	7272	genome.wustl.edu	37	6	80749505	80749505	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003318.4	+1	reviewed	p.I741M	1.000	101	0%	31	48.4%	31	48.3%	benign(0.073)	tolerated(0.07)	neutral(0.324)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
IBTK	25998	genome.wustl.edu	37	6	82909918	82909918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015525.2	-1	reviewed	p.R989C	1.000	303	0.3%	158	51.9%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IBTK	25998	genome.wustl.edu	37	6	82923995	82923995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015525.2	-1	reviewed	p.R718I	1.000	300	0%	238	44.1%	9	0%	benign(0.422)	deleterious(0.01)	deleterious(0.542)	HMMSmart_SM00225
IBTK	25998	genome.wustl.edu	37	6	82924320	82924320	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015525.2	-1	reviewed	p.E610*	1.000	104	0%	99	46.5%	7	0%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
IBTK	25998	genome.wustl.edu	37	6	82927730	82927730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015525.2	-1	reviewed	p.E458G	1.000	405	0.2%	194	39.7%	6	83.3%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	superfamily_RCC1/BLIP-II
DOPEY1	23033	genome.wustl.edu	37	6	83829501	83829501	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015018.2	+1	validated	p.R305S	1.000	126	0%	81	44.4%	2	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_Dopey_N
DOPEY1	23033	genome.wustl.edu	37	6	83839056	83839056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015018.2	+1	validated	p.N724H	0.998	132	0%	59	32.2%	1	100%	benign(0.115)	tolerated(0.08)	neutral(0.309)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83848134	83848134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015018.2	+1	validated	p.S1458Y	1.000	64	0%	37	48.6%	3	66.6%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83848346	83848346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015018.2	+1	validated	p.L1529I	1.000	97	0%	48	41.7%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83877857	83877857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015018.2	+1	validated	p.D2457Y	1.000	77	0%	36	47.2%	28	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNAP91	9892	genome.wustl.edu	37	6	84302258	84302258	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014841.2	-1	validated	e20-1	1.000	51	0%	30	36.7%	0	-	-	-	-	-
SNAP91	9892	genome.wustl.edu	37	6	84303209	84303209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014841.2	-1	validated	p.D562Y	1.000	118	0%	69	50.7%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84836166	84836166	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014895.2	-1	validated	p.F1312	0.053	422	0%	198	43.4%	16	37.5%	-	-	-	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84859327	84859327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014895.2	-1	validated	p.S1242Y	1.000	321	0%	64	34.4%	12	41.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
SNX14	57231	genome.wustl.edu	37	6	86239919	86239919	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153816.3	-1	reviewed	p.E629*	1.000	135	0%	86	31.4%	13	7.6%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
SNX14	57231	genome.wustl.edu	37	6	86253399	86253399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153816.3	-1	reviewed	p.I396M	1.000	42	0%	94	50%	13	76.9%	possibly_damaging(0.437)	tolerated(0.34)	neutral(0.165)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
SNX14	57231	genome.wustl.edu	37	6	86267769	86267769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153816.3	-1	reviewed	p.P187S	1.000	177	0%	191	40.3%	7	0%	benign(0.015)	tolerated(0.05)	neutral(0.346)	HMMPfam_PXA,HMMSmart_SM00313
SYNCRIP	10492	genome.wustl.edu	37	6	86329085	86329085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006372.4	-1	validated	p.I353M	1.000	243	0%	213	45.1%	211	51.6%	possibly_damaging(0.822)	tolerated(0.11)	deleterious(0.583)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SYNCRIP	10492	genome.wustl.edu	37	6	86333812	86333812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006372.4	-1	validated	p.R229C	1.000	159	0%	129	33.3%	134	37.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HTR1E	3354	genome.wustl.edu	37	6	87725941	87725941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000865.2	+1	validated	p.L297M	0.963	170	0%	77	49.4%	0	-	probably_damaging(0.999)	tolerated(0.46)	deleterious(0.502)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF292	23036	genome.wustl.edu	37	6	87967172	87967172	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015021.1	+1	validated	p.F1275	0.833	184	0%	85	45.9%	13	30.7%	-	-	-	NULL
ZNF292	23036	genome.wustl.edu	37	6	87967728	87967728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015021.1	+1	validated	p.R1461C	1.000	86	0%	31	32.3%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87969052	87969052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015021.1	+1	validated	p.F1902C	1.000	29	0%	10	70%	12	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF292	23036	genome.wustl.edu	37	6	87970209	87970209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015021.1	+1	validated	p.H2288N	1.000	44	0%	26	46.2%	12	50%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
RARS2	57038	genome.wustl.edu	37	6	88231220	88231220	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020320.3	-1	reviewed	p.R333*	0.999	237	0%	172	43%	40	30%	-	-	-	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
SPACA1	81833	genome.wustl.edu	37	6	88776024	88776024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030960.2	+1	reviewed	p.D286Y	1.000	137	0%	113	47.8%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
RNGTT	8732	genome.wustl.edu	37	6	89324108	89324108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003800.3	-1	validated	p.K505Q	1.000	519	0%	214	40.2%	13	53.8%	possibly_damaging(0.934)	deleterious(0.04)	deleterious(0.729)	HMMPfam_mRNA_cap_C,superfamily_Nucleic acid-binding proteins
MDN1	23195	genome.wustl.edu	37	6	90357851	90357851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014611.1	-1	provisional	p.V5432A	1.000	273	0%	166	50.6%	24	58.3%	unknown(0)	tolerated(0.13)	-	HMMSmart_SM00327,superfamily_vWA-like
MDN1	23195	genome.wustl.edu	37	6	90365651	90365651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014611.1	-1	provisional	p.R5108C	1.000	99	0%	30	43.3%	19	26.3%	unknown(0)	deleterious(0)	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90374243	90374243	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014611.1	-1	provisional	p.F4733	1.000	253	0%	178	42.1%	21	57.1%	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90408732	90408732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014611.1	-1	provisional	p.S3007Y	0.505	53	0%	42	57.1%	4	50%	benign(0.179)	tolerated(1)	neutral(0.017)	NULL
MDN1	23195	genome.wustl.edu	37	6	90428536	90428536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014611.1	-1	provisional	p.A2091T	1.000	192	0%	60	48.3%	1	0%	probably_damaging(0.994)	tolerated(0.61)	neutral(0.456)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90450000	90450000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014611.1	-1	provisional	p.R1516C	1.000	243	0%	155	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
GJA10	84694	genome.wustl.edu	37	6	90604484	90604484	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032602.1	+1	validated	p.R99	0.992	315	0%	129	48.8%	0	-	-	-	-	HMMPfam_Connexin
LOC100129711	100129711	genome.wustl.edu	37	6	90661480	90661480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001715261.1	+1	model	p.E70*	1.000	184	0%	56	53.6%	2	0%	probably_damaging(0.967)	tolerated(0.07)	deleterious(0.728)	NULL
FHL5	9457	genome.wustl.edu	37	6	97051543	97051543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020482.4	+1	reviewed	p.K18N	1.000	221	0%	68	44.1%	0	-	benign(0.111)	deleterious(0.03)	neutral(0.373)	superfamily_SSF57716
MMS22L	253714	genome.wustl.edu	37	6	97613213	97613213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198468.2	-1	predicted	p.L1044I	0.029	389	0.3%	31	35.5%	8	62.5%	benign(0.253)	tolerated(0.51)	neutral(0.035)	NULL
FBXL4	26235	genome.wustl.edu	37	6	99374767	99374767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012160.3	-1	reviewed	p.N33T	1.000	344	0%	160	38.8%	7	57.1%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
PNISR	25957	genome.wustl.edu	37	6	99848946	99848946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015491.1	-1	validated	p.R630C	1.000	304	0%	243	45.3%	55	52.7%	possibly_damaging(0.936)	deleterious(0.02)	deleterious(0.764)	NULL
PNISR	25957	genome.wustl.edu	37	6	99856109	99856109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015491.1	-1	validated	p.E238K	1.000	128	0%	80	51.2%	32	46.8%	benign(0.224)	deleterious(0)	neutral(0.467)	NULL
CCNC	892	genome.wustl.edu	37	6	99999759	99999759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005190.3	-1	reviewed	p.F120C	1.000	45	0%	33	45.5%	73	47.9%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	HMMSmart_SM00385,superfamily_Cyclin-like
PRDM13	59336	genome.wustl.edu	37	6	100056651	100056651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021620.3	+1	validated	p.S60L	1.000	20	0%	28	42.9%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMSmart_SET
MCHR2	84539	genome.wustl.edu	37	6	100368963	100368963	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040179.1	-1	validated	p.I292	1.000	510	0.2%	133	45.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ASCC3	10973	genome.wustl.edu	37	6	101037618	101037618	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006828.2	-1	validated	p.T1814	0.891	76	0%	45	53.3%	26	61.5%	-	-	-	HMMPfam_Sec63,HMMSmart_SEC63
ASCC3	10973	genome.wustl.edu	37	6	101090484	101090484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006828.2	-1	validated	p.L1292I	1.000	173	0%	64	37.5%	12	50%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	superfamily_SSF52540
ASCC3	10973	genome.wustl.edu	37	6	101100728	101100728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006828.2	-1	validated	p.V954G	1.000	112	0%	61	36.1%	12	50%	benign(0.353)	deleterious(0)	deleterious(0.556)	NULL
ASCC3	10973	genome.wustl.edu	37	6	101296418	101296418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006828.2	-1	validated	p.R136Q	0.997	73	1.4%	32	53.1%	8	50%	benign(0.07)	tolerated(0.65)	neutral(0.008)	NULL
GRIK2	2898	genome.wustl.edu	37	6	102376391	102376391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021956.4	+1	reviewed	p.A657T	1.000	421	0%	50	52%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
HACE1	57531	genome.wustl.edu	37	6	105297081	105297081	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020771.3	-1	validated	p.G88*	1.000	128	0%	114	50.9%	4	50%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
POPDC3	64208	genome.wustl.edu	37	6	105609758	105609758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022361.4	-1	reviewed	p.K9N	0.843	96	0%	142	47.9%	0	-	benign(0.071)	tolerated(0.41)	neutral(0.020)	NULL
POPDC3	64208	genome.wustl.edu	37	6	105609851	105609851	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_024539.1	-1	validated	NULL	0.001	38	0%	62	46.8%	0	-	-	-	-	-
PRDM1	639	genome.wustl.edu	37	6	106553555	106553555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001198.3	+1	reviewed	p.D507G	1.000	20	0%	12	33.3%	2	100%	benign(0.024)	deleterious(0)	neutral(0.446)	NULL
LOC100287304	100287304	genome.wustl.edu	37	6	106553754	106553754	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342660.1	-1	model	p.*224L	0.912	45	0%	22	40.9%	3	33.3%	-	-	-	NULL
RTN4IP1	84816	genome.wustl.edu	37	6	107019897	107019897	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032730.4	-1	reviewed	p.G389*	1.000	168	0%	165	49.1%	3	33.3%	-	-	-	NULL
BEND3	57673	genome.wustl.edu	37	6	107420472	107420472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080450.2	-1	validated	p.F6L	1.000	220	0%	420	42.4%	2	50%	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
SOBP	55084	genome.wustl.edu	37	6	107908371	107908371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018013.3	+1	validated	p.E221K	1.000	110	0%	24	37.5%	0	-	possibly_damaging(0.664)	tolerated(0.06)	deleterious(0.557)	NULL
SOBP	55084	genome.wustl.edu	37	6	107956461	107956461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018013.3	+1	validated	p.N805D	1.000	19	0%	10	60%	0	-	possibly_damaging(0.643)	tolerated(0.21)	neutral(0.270)	NULL
SEC63	11231	genome.wustl.edu	37	6	108197808	108197808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007214.4	-1	reviewed	p.S665F	1.000	290	0%	134	44.8%	76	1.3%	benign(0.104)	deleterious(0)	neutral(0.453)	HMMPfam_Sec63,HMMSmart_SEC63
SEC63	11231	genome.wustl.edu	37	6	108197813	108197813	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007214.4	-1	reviewed	p.L663	0.998	265	0%	123	45.5%	74	86.4%	-	-	-	HMMPfam_Sec63,HMMSmart_SEC63
SEC63	11231	genome.wustl.edu	37	6	108214703	108214703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007214.4	-1	reviewed	p.N553D	1.000	393	0%	241	38.2%	34	0%	benign(0.29)	tolerated(0.63)	neutral(0.093)	HMMSmart_SEC63
SEC63	11231	genome.wustl.edu	37	6	108215092	108215092	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007214.4	-1	reviewed	p.E484*	1.000	86	0%	35	45.7%	46	0%	-	-	-	HMMPfam_Sec63,HMMSmart_SEC63
NR2E1	7101	genome.wustl.edu	37	6	108508564	108508564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003269.3	+1	validated	p.S352Y	1.000	339	0%	199	35.2%	0	-	possibly_damaging(0.92)	tolerated(0.81)	neutral(0.371)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ARMC2	84071	genome.wustl.edu	37	6	109274314	109274314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032131.4	+1	validated	p.E559*	1.000	186	0%	142	49.3%	0	-	-	-	-	superfamily_ARM-type_fold
CEP57L1	285753	genome.wustl.edu	37	6	109467997	109467997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083535.1	+1	validated	p.I66S	1.000	54	0%	41	51.2%	7	42.8%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
PPIL6	285755	genome.wustl.edu	37	6	109748160	109748160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173672.4	-1	validated	p.F174C	1.000	207	0%	203	49.3%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
AKD1	221264	genome.wustl.edu	37	6	109827994	109827994	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000470564	-1	known	p.S335L	0.459	45	0%	103	45.6%	0	-	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKD1	221264	genome.wustl.edu	37	6	109871483	109871483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145128.2	-1	provisional	p.R925I	0.777	267	0%	186	47.3%	0	-	possibly_damaging(0.918)	tolerated(0.2)	neutral(0.417)	NULL
DDO	8528	genome.wustl.edu	37	6	110729610	110729610	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003649.2	-1	reviewed	p.E98*	0.998	182	0%	165	44.2%	0	-	-	-	-	HMMPfam_DAO,superfamily_Nucleotide-binding domain
RPF2	84154	genome.wustl.edu	37	6	111310216	111310216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000454951	+1	known	p.N9H	0.501	179	0%	249	46.2%	0	-	possibly_damaging(0.886)	-	-	HMMPfam_Brix
REV3L	5980	genome.wustl.edu	37	6	111632449	111632449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002912.3	-1	validated	p.S2873Y	1.000	163	0%	190	40%	32	53.1%	possibly_damaging(0.756)	deleterious(0.01)	deleterious(0.685)	HMMPfam_DNA_pol_B,superfamily_DNA/RNA polymerases
REV3L	5980	genome.wustl.edu	37	6	111726690	111726690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002912.3	-1	validated	p.R183Q	1.000	135	0%	65	52.3%	1	100%	probably_damaging(0.999)	-	-	superfamily_Ribonuclease H-like
WISP3	8838	genome.wustl.edu	37	6	112382254	112382254	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198239.1	+1	reviewed	p.E55*	0.007	296	0%	37	43.2%	0	-	-	-	-	NULL
LAMA4	3910	genome.wustl.edu	37	6	112441603	112441603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105206.1	-1	reviewed	p.E1516D	1.000	207	0.5%	50	44%	2	0%	probably_damaging(0.994)	tolerated(0.76)	neutral(0.453)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
LAMA4	3910	genome.wustl.edu	37	6	112454030	112454030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105206.1	-1	reviewed	p.F1253L	0.998	171	0%	38	52.6%	2	0%	benign(0.002)	tolerated(0.61)	neutral(0.004)	superfamily_Concanavalin A-like lectins/glucanases
LOC100128588	100128588	genome.wustl.edu	37	6	112647526	112647526	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001723020.1	-1	model	p.I142	0.961	32	0%	30	53.3%	0	-	-	-	-	NULL
LOC100128588	100128588	genome.wustl.edu	37	6	112647703	112647703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001723020.1	-1	model	p.D83E	0.998	26	0%	26	38.5%	0	-	-	-	-	NULL
FRK	2444	genome.wustl.edu	37	6	116381388	116381388	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002031.2	-1	reviewed	p.I29	0.713	127	0%	29	48.3%	1	0%	-	-	-	NULL
DSE	29940	genome.wustl.edu	37	6	116758435	116758435	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080976.1	+1	reviewed	p.L935R	0.999	48	0%	19	68.4%	3	33.3%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
BET3L	100128327	genome.wustl.edu	37	6	116818143	116818143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001139444.2	-1	validated	p.E174K	0.999	643	0%	137	39.4%	0	-	unknown(0)	tolerated(0.14)	-	NULL
FAM26E	254228	genome.wustl.edu	37	6	116833089	116833089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153711.2	+1	validated	p.F77C	1.000	75	0%	17	29.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RWDD1	51389	genome.wustl.edu	37	6	116910146	116910146	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015952.2	+1	validated	p.K138*	1.000	41	0%	29	37.9%	74	29.7%	-	-	-	NULL
RSPH4A	345895	genome.wustl.edu	37	6	116938279	116938279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010892.2	+1	reviewed	p.D165N	0.000	173	0%	110	48.2%	2	50%	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
GPRC6A	222545	genome.wustl.edu	37	6	117128027	117128027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148963.2	-1	validated	p.F281L	0.907	166	0%	46	58.7%	0	-	probably_damaging(0.953)	tolerated(0.25)	neutral(0.433)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
RFX6	222546	genome.wustl.edu	37	6	117198958	117198958	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173560.2	+1	validated	e2-1	1.000	45	0%	55	38.2%	0	-	-	-	-	-
RFX6	222546	genome.wustl.edu	37	6	117243297	117243297	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173560.2	+1	validated	p.E474*	1.000	154	0%	90	41.1%	0	-	-	-	-	NULL
RFX6	222546	genome.wustl.edu	37	6	117243304	117243304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173560.2	+1	validated	p.R476I	1.000	154	0.6%	88	50%	0	-	possibly_damaging(0.846)	tolerated(0.31)	neutral(0.352)	NULL
RFX6	222546	genome.wustl.edu	37	6	117252617	117252617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173560.2	+1	validated	p.S912Y	1.000	180	0%	41	41.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ROS1	6098	genome.wustl.edu	37	6	117662296	117662296	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002944.2	-1	reviewed	e30+2	0.988	168	0%	45	37.8%	0	-	-	-	-	-
ROS1	6098	genome.wustl.edu	37	6	117715847	117715847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002944.2	-1	reviewed	p.R304I	1.000	124	0%	56	32.1%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117737435	117737435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002944.2	-1	reviewed	p.C72R	0.975	175	0%	43	37.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ROS1	6098	genome.wustl.edu	37	6	117746808	117746808	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002944.2	-1	reviewed	p.I4	0.854	110	0%	42	31%	0	-	-	-	-	NULL
CEP85L	387119	genome.wustl.edu	37	6	118886793	118886793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042475.2	-1	validated	p.N307H	1.000	139	0%	71	39.4%	3	66.6%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
FAM184A	79632	genome.wustl.edu	37	6	119338003	119338003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024581.4	-1	validated	p.S480Y	0.999	230	0%	290	45.2%	1	0%	probably_damaging(0.955)	deleterious(0.02)	deleterious(0.782)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121602694	121602694	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152730.4	-1	validated	p.N535fs	0.997	-	-	-	-	-	-	-	-	-	NULL
SERINC1	57515	genome.wustl.edu	37	6	122775306	122775306	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020755.2	-1	provisional	p.T147	1.000	45	0%	39	53.8%	50	44%	-	-	-	HMMPfam_Serinc
SMPDL3A	10924	genome.wustl.edu	37	6	123130270	123130270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006714.3	+1	validated	p.A360V	1.000	98	0%	111	43.2%	4	50%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
TRDN	10345	genome.wustl.edu	37	6	123577012	123577012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006073.2	-1	validated	p.V636F	0.741	31	0%	32	40.6%	0	-	unknown(0)	deleterious(0)	-	NULL
TRDN	10345	genome.wustl.edu	37	6	123592306	123592306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006073.2	-1	validated	p.K566N	1.000	159	0%	57	31.6%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
TRDN	10345	genome.wustl.edu	37	6	123869681	123869681	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006073.2	-1	validated	p.I103	1.000	157	0%	48	52.1%	0	-	-	-	-	HMMPfam_Triadin
RNF217	154214	genome.wustl.edu	37	6	125404022	125404022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152553.2	+1	provisional	p.I269M	1.000	255	0%	99	40.4%	6	83.3%	possibly_damaging(0.598)	deleterious(0.01)	deleterious(0.613)	NULL
TPD52L1	7164	genome.wustl.edu	37	6	125541215	125541215	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000392484	+1	known	e2-2	0.127	151	0%	43	37.2%	0	-	-	-	-	-
TRMT11	60487	genome.wustl.edu	37	6	126359982	126359982	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031712.2	+1	validated	p.*464W	0.968	90	0%	47	40.4%	8	25%	-	-	-	NULL
LOC100287918	100287918	genome.wustl.edu	37	6	127981416	127981416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342669.1	+1	model	p.I152S	0.992	122	0%	78	16.7%	0	-	-	-	-	NULL
THEMIS	387357	genome.wustl.edu	37	6	128040917	128040917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010923.2	-1	reviewed	p.D604N	0.698	518	0%	41	53.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
THEMIS	387357	genome.wustl.edu	37	6	128135026	128135026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010923.2	-1	reviewed	p.D254Y	1.000	198	0%	56	16.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
THEMIS	387357	genome.wustl.edu	37	6	128150743	128150743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010923.2	-1	reviewed	p.R196I	1.000	156	0%	135	47.4%	0	-	probably_damaging(0.975)	tolerated(0.19)	neutral(0.466)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128403714	128403714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135648.1	-1	validated	p.N549H	1.000	306	0.3%	26	34.6%	18	50%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PTPRK	5796	genome.wustl.edu	37	6	128643330	128643330	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135648.1	-1	validated	p.G117*	0.969	260	0%	40	25%	10	10%	-	-	-	HMMPfam_MAM,HMMSmart_MAM
PTPRK	5796	genome.wustl.edu	37	6	128718777	128718777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135648.1	-1	validated	p.D53N	1.000	139	0%	74	48.6%	13	46.1%	benign(0.003)	tolerated(0.45)	neutral(0.012)	HMMPfam_MAM,HMMSmart_MAM
LAMA2	3908	genome.wustl.edu	37	6	129380932	129380932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000426.3	+1	reviewed	p.R96K	1.000	260	0.4%	91	46.2%	0	-	benign(0.072)	tolerated(0.07)	neutral(0.324)	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
LAMA2	3908	genome.wustl.edu	37	6	129636697	129636697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000426.3	+1	reviewed	p.V1211A	0.000	201	0%	94	43.6%	1	0%	benign(0)	tolerated(0.49)	neutral(0.011)	superfamily_ConA_like_lec_gl
LAMA2	3908	genome.wustl.edu	37	6	129712699	129712699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000426.3	+1	reviewed	p.R1712I	1.000	100	0%	86	38.4%	0	-	benign(0.027)	deleterious(0.05)	neutral(0.347)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
LAMA2	3908	genome.wustl.edu	37	6	129759863	129759863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000426.3	+1	reviewed	p.R2014I	0.407	103	0%	36	30.6%	0	-	possibly_damaging(0.92)	tolerated(0.07)	deleterious(0.690)	superfamily_ConA_like_lec_gl
ARHGAP18	93663	genome.wustl.edu	37	6	129920427	129920427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033515.2	-1	validated	p.K549N	1.000	225	0%	154	43.5%	10	30%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ARHGAP18	93663	genome.wustl.edu	37	6	129929168	129929168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033515.2	-1	validated	p.F384L	1.000	32	0%	27	40.7%	8	62.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
TMEM244	253582	genome.wustl.edu	37	6	130152480	130152480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010876.1	-1	provisional	p.S124L	0.000	69	0%	38	52.6%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
TMEM244	253582	genome.wustl.edu	37	6	130154728	130154728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010876.1	-1	provisional	p.L66I	0.992	198	0%	67	46.3%	0	-	possibly_damaging(0.875)	tolerated(0.25)	neutral(0.377)	NULL
SAMD3	154075	genome.wustl.edu	37	6	130475988	130475988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017373.2	-1	validated	p.F335L	0.929	87	0%	79	43%	0	-	probably_damaging(0.998)	tolerated(0.43)	deleterious(0.488)	NULL
SAMD3	154075	genome.wustl.edu	37	6	130476130	130476130	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000437477	-1	known	p.Y34*	1.000	238	0%	168	39.9%	0	-	possibly_damaging(0.441)	deleterious(0.04)	deleterious(0.493)	NULL
TMEM200A	114801	genome.wustl.edu	37	6	130762056	130762056	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052913.2	+1	provisional	p.I163	1.000	139	0%	34	41.2%	9	0%	-	-	-	NULL
MED23	9439	genome.wustl.edu	37	6	131911567	131911567	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004830.2	-1	reviewed	p.V1234	0.006	51	0%	55	47.3%	12	25%	-	-	-	NULL
OR2A4	79541	genome.wustl.edu	37	6	132022023	132022023	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030908.1	-1	provisional	p.I173M	0.000	258	0%	195	25.6%	0	-	possibly_damaging(0.613)	deleterious(0.01)	deleterious(0.618)	HMMPfam_7tm_1,superfamily_SSF81321
CTAGE9	643854	genome.wustl.edu	37	6	132030398	132030398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145659.1	-1	provisional	p.P587L	0.000	1065	0.1%	441	15%	4	0%	benign(0.017)	tolerated(0.06)	neutral(0.323)	NULL
ENPP3	5169	genome.wustl.edu	37	6	132059281	132059281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005021.3	+1	reviewed	p.D760Y	1.000	156	0%	101	61.4%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_NUC,superfamily_SSF54060
ENPP1	5167	genome.wustl.edu	37	6	132182832	132182832	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006208.2	+1	reviewed	p.K338T	0.824	122	0%	97	48.5%	2	0%	possibly_damaging(0.736)	tolerated(0.34)	neutral(0.292)	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
ENPP1	5167	genome.wustl.edu	37	6	132190590	132190590	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006208.2	+1	reviewed	p.R456*	1.000	76	0%	52	53.8%	1	0%	-	-	-	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
TAAR9	134860	genome.wustl.edu	37	6	132859727	132859727	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175057.3	+1	reviewed	p.F100C	1.000	652	0%	98	55.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TAAR6	319100	genome.wustl.edu	37	6	132892124	132892124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175067.1	+1	reviewed	p.L222I	0.000	124	0%	55	45.5%	0	-	benign(0.077)	tolerated(0.39)	neutral(0.021)	HMMPfam_7tm_1,superfamily_SSF81321
TAAR5	9038	genome.wustl.edu	37	6	132910453	132910453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003967.2	-1	validated	p.L125I	0.306	343	0%	92	48.9%	0	-	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
TCF21	6943	genome.wustl.edu	37	6	134210615	134210615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003206.3	+1	reviewed	p.S27L	1.000	69	0%	41	31.7%	0	-	benign(0.147)	deleterious(0.04)	neutral(0.362)	NULL
TBPL1	9519	genome.wustl.edu	37	6	134305528	134305528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004865.2	+1	reviewed	p.D99E	1.000	76	0%	44	40.9%	47	48.9%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_TBP,superfamily_TATA-box binding protein-like
TBPL1	9519	genome.wustl.edu	37	6	134305784	134305784	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004865.2	+1	reviewed	p.F152L	1.000	93	0%	51	39.2%	50	52%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TBP,superfamily_TATA-box binding protein-like
HBS1L	10767	genome.wustl.edu	37	6	135363201	135363201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006620.3	-1	reviewed	p.Y58C	1.000	181	0%	105	43.8%	19	47.3%	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_DUF1916,superfamily_HBS1-like domain
BCLAF1	9774	genome.wustl.edu	37	6	136582522	136582522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014739.2	-1	reviewed	p.K880Q	1.000	646	0%	175	24%	111	49.5%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136590683	136590683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014739.2	-1	reviewed	p.R704I	1.000	213	0%	70	11.4%	80	47.5%	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136596815	136596815	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014739.2	-1	reviewed	p.R569	1.000	187	0%	36	44.4%	79	44.3%	-	-	-	NULL
BCLAF1	9774	genome.wustl.edu	37	6	136597401	136597401	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014739.2	-1	reviewed	p.K421T	1.000	357	0%	125	17.6%	72	0%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136913424	136913424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005923.3	-1	reviewed	p.D1038Y	1.000	75	0%	90	38.9%	4	0%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136944051	136944051	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005923.3	-1	reviewed	p.Y695	0.765	307	0.3%	148	14.2%	1	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
KIAA1244	57221	genome.wustl.edu	37	6	138559660	138559660	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020340.4	+1	validated	p.T145	0.097	180	0%	24	41.7%	4	25%	-	-	-	NULL
NHSL1	57224	genome.wustl.edu	37	6	138754047	138754047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144060.1	-1	validated	p.L479I	0.000	185	0%	61	44.3%	7	14.2%	benign(0.041)	tolerated(0.39)	neutral(0.018)	NULL
ECT2L	345930	genome.wustl.edu	37	6	139159557	139159557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077706.1	+1	validated	p.R83H	1.000	154	0%	152	41.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
GPR126	57211	genome.wustl.edu	37	6	142691640	142691640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198569.2	+1	reviewed	p.S260Y	0.792	213	0%	100	43%	1	0%	benign(0.003)	deleterious(0.04)	neutral(0.349)	superfamily_ConA_like_lec_gl
GPR126	57211	genome.wustl.edu	37	6	142714135	142714135	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198569.2	+1	reviewed	p.I453	1.000	113	0%	50	42%	1	0%	-	-	-	NULL
GPR126	57211	genome.wustl.edu	37	6	142732441	142732441	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198569.2	+1	reviewed	e18-1	0.976	270	0.4%	23	39.1%	0	-	-	-	-	-
AIG1	51390	genome.wustl.edu	37	6	143605276	143605276	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016108.2	+1	validated	p.I143	1.000	342	0%	54	40.7%	20	30%	-	-	-	HMMPfam_Far-17a_AIG1
UTRN	7402	genome.wustl.edu	37	6	144747467	144747467	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007124.2	+1	reviewed	p.T150	0.004	125	0%	28	53.6%	1	0%	-	-	-	superfamily_Calponin-homology
UTRN	7402	genome.wustl.edu	37	6	144759926	144759926	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007124.2	+1	reviewed	p.Q429	1.000	81	0%	59	18.6%	2	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144768444	144768444	+	Missense_Mutation	SNP	G	G	A	rs181231692	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007124.2	+1	reviewed	p.R571Q	1.000	189	0%	101	44.6%	2	50%	probably_damaging(0.961)	tolerated(0.31)	neutral(0.431)	HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144779923	144779923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007124.2	+1	reviewed	p.E768*	0.993	58	0%	44	38.6%	3	0%	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	145051561	145051561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007124.2	+1	reviewed	p.F2626L	1.000	96	0%	32	56.2%	8	25%	probably_damaging(0.973)	tolerated(0.06)	deleterious(0.738)	HMMSmart_SPEC,superfamily_Spectrin
FBXO30	84085	genome.wustl.edu	37	6	146127038	146127038	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032145.4	-1	reviewed	p.A168	0.995	317	0%	101	51.5%	11	45.4%	-	-	-	NULL
SHPRH	257218	genome.wustl.edu	37	6	146266555	146266555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042683.2	-1	validated	p.Y514D	1.000	197	0%	64	10.9%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRM1	2911	genome.wustl.edu	37	6	146719939	146719939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000838.3	+1	reviewed	p.W588*	1.000	180	0%	41	61%	1	0%	-	-	-	NULL
ADGB	79747	genome.wustl.edu	37	6	146993501	146993501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024694.3	+1	provisional	p.E329*	0.987	84	0%	43	48.8%	0	-	-	-	-	HMMSmart_SM00230
ADGB	79747	genome.wustl.edu	37	6	146997466	146997466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024694.3	+1	provisional	p.D369N	0.890	177	0%	48	41.7%	0	-	possibly_damaging(0.84)	deleterious(0)	deleterious(0.766)	HMMSmart_SM00230
ADGB	79747	genome.wustl.edu	37	6	147022192	147022192	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024694.3	+1	provisional	p.K565Q	0.000	307	0%	41	46.3%	0	-	benign(0.071)	tolerated(0.1)	neutral(0.291)	HMMSmart_SM00230
ADGB	79747	genome.wustl.edu	37	6	147061647	147061647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024694.3	+1	provisional	p.D981Y	1.000	124	0%	92	46.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADGB	79747	genome.wustl.edu	37	6	147106789	147106789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024694.3	+1	provisional	p.K1419T	0.261	270	0%	72	44.4%	0	-	possibly_damaging(0.605)	-	-	NULL
TAB2	23118	genome.wustl.edu	37	6	149700040	149700040	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015093.4	+1	reviewed	p.L330R	1.000	213	0%	97	30.9%	31	35.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SUMO4	387082	genome.wustl.edu	37	6	149721744	149721744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002255.1	+1	reviewed	p.P73S	1.000	107	0%	70	50%	0	-	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
LATS1	9113	genome.wustl.edu	37	6	150001395	150001395	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004690.2	-1	reviewed	p.R737*	1.000	161	0%	90	46.7%	6	16.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LATS1	9113	genome.wustl.edu	37	6	150005526	150005526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004690.2	-1	reviewed	p.R233S	1.000	279	0%	75	42.7%	12	83.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
RAET1G	353091	genome.wustl.edu	37	6	150240291	150240291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001788.2	-1	provisional	p.E173D	0.001	601	0.2%	417	40.8%	0	-	benign(0.187)	tolerated(0.34)	neutral(0.041)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
ULBP3	79465	genome.wustl.edu	37	6	150386730	150386730	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024518.1	-1	provisional	p.F144	0.000	100	0%	78	52.6%	7	57.1%	-	-	-	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
PLEKHG1	57480	genome.wustl.edu	37	6	151055145	151055145	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029884.1	+1	provisional	p.K110*	1.000	35	2.9%	40	47.5%	17	58.8%	-	-	-	superfamily_DBL homology domain (DH-domain)
PLEKHG1	57480	genome.wustl.edu	37	6	151055190	151055190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029884.1	+1	provisional	p.E125K	0.989	32	0%	41	41.5%	20	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
PLEKHG1	57480	genome.wustl.edu	37	6	151152788	151152788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029884.1	+1	provisional	p.K847N	1.000	73	0%	31	41.9%	24	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTHFD1L	25902	genome.wustl.edu	37	6	151293131	151293131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015440.3	+1	validated	p.G688S	1.000	257	0%	124	48.4%	33	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP12	9590	genome.wustl.edu	37	6	151671320	151671320	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005100.3	+1	reviewed	p.S598	0.070	90	0%	48	45.8%	17	82.3%	-	-	-	NULL
AKAP12	9590	genome.wustl.edu	37	6	151674413	151674413	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005100.3	+1	reviewed	p.D1629	0.000	250	0%	118	44.9%	26	46.1%	-	-	-	NULL
C6orf211	79624	genome.wustl.edu	37	6	151789810	151789810	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024573.1	+1	predicted	p.F297	0.890	170	0%	199	48.7%	52	53.8%	-	-	-	HMMPfam_DUF89,superfamily_DUF89
C6orf97	80129	genome.wustl.edu	37	6	151859218	151859218	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025059.3	+1	validated	p.V75	0.022	77	0%	34	44.1%	4	25%	-	-	-	NULL
C6orf97	80129	genome.wustl.edu	37	6	151865752	151865752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025059.3	+1	validated	p.K163N	0.011	146	0%	129	52.7%	1	100%	benign(0.167)	tolerated(0.14)	neutral(0.265)	NULL
C6orf97	80129	genome.wustl.edu	37	6	151936783	151936783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025059.3	+1	validated	p.S639Y	0.759	153	0%	98	36.7%	4	50%	possibly_damaging(0.843)	deleterious(0.03)	deleterious(0.688)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152529205	152529205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.R7576C	1.000	357	0.6%	62	38.7%	2	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152642914	152642914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.T5342M	1.000	214	0%	257	39.7%	0	-	probably_damaging(1)	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152647133	152647133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.S5133L	1.000	211	0%	267	45.7%	0	-	benign(0.08)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152651599	152651599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.R4741C	0.984	157	0%	63	38.1%	0	-	probably_damaging(1)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152680545	152680545	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.E3450*	0.497	147	0%	75	64%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152697632	152697632	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.R3070*	0.988	300	0.3%	151	12.6%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152737763	152737763	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.L1937	0.750	282	0%	128	47.7%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152765634	152765634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.S1250Y	0.879	152	0%	183	50.8%	0	-	benign(0.355)	tolerated(0.06)	neutral(0.435)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152786535	152786535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182961.2	-1	reviewed	p.L597R	1.000	207	0%	56	44.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Spectrin repeat
FBXO5	26271	genome.wustl.edu	37	6	153294181	153294181	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012177.3	-1	reviewed	p.T303	0.180	207	0%	150	14%	46	10.8%	-	-	-	NULL
FBXO5	26271	genome.wustl.edu	37	6	153296497	153296497	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012177.3	-1	reviewed	p.Q121	0.123	252	0%	230	42.2%	35	45.7%	-	-	-	NULL
RGS17	26575	genome.wustl.edu	37	6	153332860	153332860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012419.4	-1	reviewed	p.R161I	1.000	54	0%	59	42.4%	0	-	possibly_damaging(0.782)	deleterious(0)	deleterious(0.738)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
OPRM1	4988	genome.wustl.edu	37	6	154412384	154412384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145279.1	+1	reviewed	p.T407M	0.762	301	0%	75	45.3%	0	-	possibly_damaging(0.825)	tolerated(0.09)	deleterious(0.609)	HMMPfam_7tm_1,superfamily_SSF81321
TIAM2	26230	genome.wustl.edu	37	6	155578154	155578154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012454.3	+1	reviewed	p.D1669N	0.989	131	0%	92	47.8%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZDHHC14	79683	genome.wustl.edu	37	6	157963675	157963675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024630.2	+1	provisional	p.F102L	1.000	76	1.3%	35	17.1%	3	33.3%	benign(0.014)	tolerated(0.21)	neutral(0.044)	NULL
TULP4	56995	genome.wustl.edu	37	6	158922735	158922735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020245.3	+1	validated	p.E680D	1.000	95	0%	51	11.8%	3	0%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
TULP4	56995	genome.wustl.edu	37	6	158924662	158924662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020245.3	+1	validated	p.E1323K	1.000	31	0%	42	47.6%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYTL3	94120	genome.wustl.edu	37	6	159084311	159084311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009991.2	+1	validated	p.E4G	0.120	51	0%	38	39.5%	2	100%	possibly_damaging(0.614)	tolerated(0.28)	neutral(0.244)	NULL
TAGAP	117289	genome.wustl.edu	37	6	159457603	159457603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054114.3	-1	reviewed	p.F484L	0.543	52	0%	53	52.8%	0	-	probably_damaging(0.991)	tolerated(1)	neutral(0.444)	NULL
TAGAP	117289	genome.wustl.edu	37	6	159461820	159461820	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054114.3	-1	reviewed	p.L174	1.000	292	0%	90	11.1%	1	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
FNDC1	84624	genome.wustl.edu	37	6	159657300	159657300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032532.2	+1	validated	p.K1341Q	1.000	104	0%	163	14.7%	6	0%	unknown(0)	deleterious(0)	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159687209	159687209	+	Missense_Mutation	SNP	G	G	A	rs143447403	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032532.2	+1	validated	p.R1793Q	0.655	490	0%	111	37.8%	8	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TCP1	6950	genome.wustl.edu	37	6	160206482	160206482	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030752.2	-1	reviewed	p.E142*	1.000	200	0%	200	44.5%	178	9.5%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase
IGF2R	3482	genome.wustl.edu	37	6	160485885	160485885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000876.2	+1	reviewed	p.R1356Q	0.872	417	0%	215	39.5%	40	47.5%	probably_damaging(0.97)	tolerated(0.36)	neutral(0.432)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A2	6582	genome.wustl.edu	37	6	160645760	160645760	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003058.2	-1	reviewed	p.I526	0.964	268	0%	70	41.4%	0	-	-	-	-	superfamily_MFS general substrate transporter
SLC22A2	6582	genome.wustl.edu	37	6	160662570	160662570	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003058.2	-1	reviewed	p.I479	0.997	105	0%	24	58.3%	0	-	-	-	-	superfamily_MFS general substrate transporter
SLC22A3	6581	genome.wustl.edu	37	6	160829948	160829948	+	Nonsense_Mutation	SNP	T	T	G	rs188005276	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021977.2	+1	reviewed	p.Y284*	1.000	301	0%	73	50.7%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A3	6581	genome.wustl.edu	37	6	160857811	160857811	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021977.2	+1	reviewed	e6-1	1.000	130	0%	132	42.4%	0	-	-	-	-	-
LPA	4018	genome.wustl.edu	37	6	161014997	161014997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005577.2	-1	reviewed	p.P1208T	0.103	254	0%	92	41.3%	0	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161173150	161173150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000301.3	+1	reviewed	p.T710N	0.031	108	0%	76	40.8%	0	-	possibly_damaging(0.746)	tolerated(0.06)	deleterious(0.597)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MAP3K4	4216	genome.wustl.edu	37	6	161470088	161470088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005922.2	+1	reviewed	p.E262K	1.000	114	0%	64	46.9%	6	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MAP3K4	4216	genome.wustl.edu	37	6	161529779	161529779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005922.2	+1	reviewed	p.R1375Q	0.979	217	0%	122	25.4%	30	36.6%	probably_damaging(1)	tolerated(0.39)	deleterious(0.516)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PDE10A	10846	genome.wustl.edu	37	6	165746585	165746585	+	Nonsense_Mutation	SNP	G	G	A	rs141939882		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130690.1	-1	validated	p.R767*	0.002	115	0%	70	57.1%	1	0%	-	-	-	superfamily_SSF109604
PDE10A	10846	genome.wustl.edu	37	6	165863801	165863801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130690.1	-1	validated	p.I92T	1.000	244	0%	157	43.9%	0	-	benign(0.03)	tolerated(0.09)	neutral(0.298)	superfamily_SSF55781
T	6862	genome.wustl.edu	37	6	166578155	166578155	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003181.2	-1	reviewed	e5-1	1.000	37	0%	70	50%	0	-	-	-	-	-
RPS6KA2	6196	genome.wustl.edu	37	6	166831828	166831828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006932.1	-1	reviewed	p.F616C	0.997	31	0%	39	41%	15	33.3%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CCR6	1235	genome.wustl.edu	37	6	167550249	167550249	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004367.5	+1	reviewed	p.I177	0.971	82	0%	70	50%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
UNC93A	54346	genome.wustl.edu	37	6	167717600	167717600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018974.3	+1	validated	p.F273L	1.000	122	0%	78	41%	1	0%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	superfamily_MFS_gen_substrate_transporter
UNC93A	54346	genome.wustl.edu	37	6	167721349	167721349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018974.3	+1	validated	p.F353L	0.006	147	0%	25	56%	0	-	benign(0)	tolerated(1)	-	superfamily_MFS_gen_substrate_transporter
MLLT4	4301	genome.wustl.edu	37	6	168265427	168265427	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040001.1	+1	validated	e2+1	1.000	274	0%	94	37.2%	0	-	-	-	-	-
MLLT4	4301	genome.wustl.edu	37	6	168317819	168317819	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040001.1	+1	validated	p.N864	0.957	154	0%	152	46.1%	14	78.5%	-	-	-	HMMPfam_DIL
MLLT4	4301	genome.wustl.edu	37	6	168363231	168363231	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000507704	+1	known	p.E133*	1.000	166	0%	75	36%	73	15%	benign(0.299)	deleterious(0.01)	deleterious(0.498)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168369850	168369850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040001.1	+1	validated	p.R1775W	0.002	204	0%	188	26.6%	62	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF25	3834	genome.wustl.edu	37	6	168443325	168443325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030615.2	+1	reviewed	p.A305V	1.000	55	0%	48	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
C6orf70	55780	genome.wustl.edu	37	6	170169682	170169682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018341.1	+1	validated	p.R369I	0.998	80	0%	156	47.4%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM120B	84498	genome.wustl.edu	37	6	170627389	170627389	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032448.1	+1	provisional	p.Y304S	1.000	26	0%	48	39.6%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM120B	84498	genome.wustl.edu	37	6	170700152	170700152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032448.1	+1	provisional	p.C848R	1.000	71	0%	63	42.9%	42	45.2%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PDGFA	5154	genome.wustl.edu	37	7	552080	552080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002607.5	-1	reviewed	p.S58Y	1.000	20	0.000	7	0.571	24	45.8%	benign(0.134)	deleterious(0.04)	neutral(0.360)	HMMPfam_PDGF_N
HEATR2	54919	genome.wustl.edu	37	7	794232	794232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017802.3	+1	validated	p.R344H	1.000	54	0%	44	50%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
SUN1	23353	genome.wustl.edu	37	7	878594	878594	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130965.2	+1	reviewed	p.S79	0.000	90	0%	78	43.6%	63	68.2%	-	-	-	HMMPfam_MRP
COX19	90639	genome.wustl.edu	37	7	1012906	1012906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031617.2	-1	validated	p.E35D	0.999	42	0%	230	47.4%	8	37.5%	benign(0.041)	tolerated(0.43)	neutral(0.016)	HMMPfam_CHCH
MICALL2	79778	genome.wustl.edu	37	7	1476463	1476463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182924.3	-1	validated	p.R836W	0.015	5	0.000	12	0.500	18	27.7%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
CARD11	84433	genome.wustl.edu	37	7	2951848	2951848	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032415.3	-1	validated	p.F1034	0.931	35	0%	98	48%	3	0%	-	-	-	superfamily_SSF52540
CARD11	84433	genome.wustl.edu	37	7	2979441	2979441	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032415.3	-1	validated	p.L269R	1.000	269	0%	227	48.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SDK1	221935	genome.wustl.edu	37	7	4008942	4008942	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152744.3	+1	validated	p.E534*	0.999	60	0%	33	24.2%	3	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SDK1	221935	genome.wustl.edu	37	7	4153063	4153063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152744.3	+1	validated	p.R1193C	0.974	53	0%	39	48.7%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PAPOLB	56903	genome.wustl.edu	37	7	4901057	4901057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020144.4	-1	validated	p.D129N	1.000	202	0%	191	40.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_NTP_transf_2,HMMPfam_PAP_central,superfamily_SSF81301
RBAK	57786	genome.wustl.edu	37	7	5112821	5112821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000407184	+1	known	p.F235C	0.001	82	0%	32	50%	0	-	unknown(0)	-	-	NULL
TNRC18	84629	genome.wustl.edu	37	7	5352916	5352916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080495.2	-1	provisional	p.E2536K	0.966	8	0.000	13	0.462	14	50%	benign(0.137)	deleterious(0.03)	neutral(0.376)	NULL
CCZ1	51622	genome.wustl.edu	37	7	5944724	5944724	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015622.5	+1	validated	e7-1	1.000	111	0%	254	41.3%	0	-	-	-	-	-
PMS2	5395	genome.wustl.edu	37	7	6026709	6026709	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000535.5	-1	reviewed	p.R563	0.000	20	0%	74	35.1%	15	46.6%	-	-	-	NULL
ZNF12	7559	genome.wustl.edu	37	7	6731682	6731682	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016265.3	-1	reviewed	p.Y297	0.000	143	0%	132	13.6%	10	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100131257	100131257	genome.wustl.edu	37	7	7118103	7118103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001716696.1	-1	model	p.E367D	1.000	46	0%	15	46.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC100131257	100131257	genome.wustl.edu	37	7	7118776	7118776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001716696.1	-1	model	p.K143T	0.709	38	0%	24	45.8%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
COL28A1	340267	genome.wustl.edu	37	7	7472316	7472316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037763.2	-1	validated	p.R626W	0.024	110	0%	40	47.5%	2	0%	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	NULL
COL28A1	340267	genome.wustl.edu	37	7	7571264	7571264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037763.2	-1	validated	p.F132L	1.000	180	0%	55	49.1%	0	-	possibly_damaging(0.797)	deleterious(0.02)	deleterious(0.682)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL28A1	340267	genome.wustl.edu	37	7	7572415	7572415	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037763.2	-1	validated	p.S31*	0.042	274	0%	133	40.6%	0	-	-	-	-	NULL
ICA1	3382	genome.wustl.edu	37	7	8258030	8258030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004968.2	-1	reviewed	p.C162R	1.000	265	0%	52	32.7%	69	52.1%	benign(0.037)	deleterious(0)	neutral(0.447)	HMMPfam_Arfaptin
NXPH1	30010	genome.wustl.edu	37	7	8790900	8790900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152745.2	+1	reviewed	p.R106I	1.000	66	0%	31	48.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neurexophilin
ARL4A	10124	genome.wustl.edu	37	7	12727950	12727950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037164.1	+1	reviewed	p.V24A	0.996	185	0%	205	35.1%	26	69.2%	benign(0)	tolerated(0.15)	neutral(0.241)	HMMSmart_SM00173,HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
ETV1	2115	genome.wustl.edu	37	7	13971183	13971183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004956.4	-1	validated	p.S249N	1.000	206	0%	92	54.3%	3	0%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_ETS_PEA3_N
ETV1	2115	genome.wustl.edu	37	7	14026299	14026299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004956.4	-1	validated	p.D49Y	1.000	267	0.4%	136	45.6%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ETS_PEA3_N
DGKB	1607	genome.wustl.edu	37	7	14378200	14378200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004080.2	-1	reviewed	p.K689Q	1.000	233	0%	54	33.3%	0	-	benign(0.424)	tolerated(0.23)	neutral(0.179)	HMMPfam_DAGK_acc,HMMSmart_SM00045
DGKB	1607	genome.wustl.edu	37	7	14733810	14733810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004080.2	-1	reviewed	p.E201*	1.000	140	0%	107	49.5%	0	-	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
DGKB	1607	genome.wustl.edu	37	7	14880829	14880829	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004080.2	-1	reviewed	p.K20N	1.000	133	0%	99	40.4%	0	-	benign(0.024)	deleterious(0.01)	neutral(0.407)	superfamily_EF-hand
AGMO	392636	genome.wustl.edu	37	7	15470668	15470668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004320.1	-1	provisional	p.A159S	1.000	294	0%	71	47.9%	0	-	possibly_damaging(0.932)	tolerated(0.08)	deleterious(0.678)	HMMPfam_FA_hydroxylase
AGMO	392636	genome.wustl.edu	37	7	15601422	15601422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004320.1	-1	provisional	p.R17C	0.829	193	0%	44	47.7%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
SNX13	23161	genome.wustl.edu	37	7	17879522	17879522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015132.4	-1	reviewed	p.R423C	1.000	245	0%	35	37.1%	13	38.4%	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
SNX13	23161	genome.wustl.edu	37	7	17915406	17915406	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015132.4	-1	reviewed	p.E150*	1.000	393	0%	152	43.4%	4	0%	-	-	-	HMMPfam_PXA,HMMSmart_SM00313
SNX13	23161	genome.wustl.edu	37	7	17937002	17937002	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015132.4	-1	reviewed	p.F27C	1.000	110	0%	82	39%	1	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
PRPS1L1	221823	genome.wustl.edu	37	7	18066485	18066485	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175886.2	-1	reviewed	p.E307D	1.000	183	0%	114	37.7%	0	-	benign(0.368)	tolerated(0.11)	neutral(0.389)	superfamily_PRTase-like
HDAC9	9734	genome.wustl.edu	37	7	18688191	18688191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178425.2	+1	reviewed	p.R451Q	1.000	126	0%	24	33.3%	10	20%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
HDAC9	9734	genome.wustl.edu	37	7	18688267	18688267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178425.2	+1	reviewed	p.E476D	1.000	105	0%	23	30.4%	12	50%	probably_damaging(0.971)	tolerated(0.14)	deleterious(0.662)	NULL
HDAC9	9734	genome.wustl.edu	37	7	18801793	18801793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178425.2	+1	reviewed	p.R686Q	1.000	136	0%	24	50%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HDAC9	9734	genome.wustl.edu	37	7	18914205	18914205	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178425.2	+1	reviewed	p.K930T	1.000	202	0%	13	38.5%	2	0%	probably_damaging(0.99)	tolerated(0.25)	deleterious(0.478)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
MACC1	346389	genome.wustl.edu	37	7	20199399	20199399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182762.3	-1	validated	p.L195F	0.994	103	0%	43	27.9%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MACC1	346389	genome.wustl.edu	37	7	20199589	20199589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182762.3	-1	validated	p.R132I	0.970	82	0%	38	44.7%	6	50%	possibly_damaging(0.805)	tolerated(0.12)	deleterious(0.564)	NULL
ITGB8	3696	genome.wustl.edu	37	7	20418898	20418898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002214.2	+1	reviewed	p.E205K	0.245	146	0.7%	106	48.1%	17	41.1%	benign(0.122)	tolerated(0.18)	neutral(0.066)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like
ABCB5	340273	genome.wustl.edu	37	7	20682911	20682911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000404938	+1	known	p.R140Q	0.993	221	0%	93	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB5	340273	genome.wustl.edu	37	7	20721258	20721258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178559.5	+1	validated	p.R168Q	0.842	143	0%	78	44.9%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB5	340273	genome.wustl.edu	37	7	20795203	20795203	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178559.5	+1	validated	p.R799*	0.911	84	0%	61	39.3%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SP4	6671	genome.wustl.edu	37	7	21516880	21516880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003112.3	+1	validated	p.R621Q	1.000	360	0%	81	13.6%	5	0%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21627806	21627806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003777.3	+1	reviewed	p.E612A	0.998	225	0%	103	37.9%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	HMMPfam_DHC_N1
DNAH11	8701	genome.wustl.edu	37	7	21654762	21654762	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003777.3	+1	reviewed	p.E1295*	1.000	322	0%	91	46.2%	1	0%	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21677307	21677307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003777.3	+1	reviewed	p.D1607Y	1.000	152	0%	85	49.4%	1	100%	probably_damaging(0.956)	tolerated(0.25)	neutral(0.436)	HMMPfam_DHC_N2
DNAH11	8701	genome.wustl.edu	37	7	21778324	21778324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003777.3	+1	reviewed	p.L2558I	1.000	128	0%	77	51.9%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21778398	21778398	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003777.3	+1	reviewed	p.I2582	0.526	143	0%	74	37.8%	2	0%	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDCA7L	55536	genome.wustl.edu	37	7	21945913	21945913	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018719.4	-1	validated	p.T305	0.010	34	0%	41	46.3%	51	54.9%	-	-	-	NULL
CDCA7L	55536	genome.wustl.edu	37	7	21948001	21948001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018719.4	-1	validated	p.R143Q	0.993	108	0%	134	41.8%	82	54.8%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
KLHL7	55975	genome.wustl.edu	37	7	23183577	23183577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031710.2	+1	reviewed	p.F242L	1.000	300	0%	116	46.6%	30	30%	benign(0.336)	deleterious(0.02)	deleterious(0.489)	HMMPfam_BACK
GPNMB	10457	genome.wustl.edu	37	7	23300387	23300387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005340.1	+1	reviewed	p.S338Y	0.111	163	0%	120	44.2%	22	0%	possibly_damaging(0.848)	deleterious(0.04)	deleterious(0.674)	HMMSmart_SM00089
IGF2BP3	10643	genome.wustl.edu	37	7	23353260	23353260	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006547.2	-1	reviewed	p.I470L	1.000	236	0%	160	46.9%	0	-	possibly_damaging(0.928)	deleterious(0.01)	deleterious(0.781)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
C7orf46	340277	genome.wustl.edu	37	7	23724180	23724180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199136.3	+1	validated	p.R43I	0.775	161	0%	144	52.8%	12	58.3%	benign(0.202)	deleterious(0.01)	neutral(0.425)	NULL
MPP6	51678	genome.wustl.edu	37	7	24663324	24663324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016447.2	+1	provisional	p.S13L	0.999	169	0%	64	45.3%	0	-	benign(0.008)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00569,HMMPfam_L27
MPP6	51678	genome.wustl.edu	37	7	24681340	24681340	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016447.2	+1	provisional	p.H41	0.971	136	0%	138	42.8%	4	25%	-	-	-	HMMSmart_SM00569,HMMPfam_L27
MPP6	51678	genome.wustl.edu	37	7	24705234	24705234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016447.2	+1	provisional	p.A271T	0.996	242	0%	51	47.1%	3	66.6%	benign(0.034)	tolerated(0.22)	neutral(0.044)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
OSBPL3	26031	genome.wustl.edu	37	7	24874001	24874001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000409452	-1	known	p.H617R	0.000	18	0%	10	60%	2	100%	unknown(0)	-	-	NULL
C7orf31	136895	genome.wustl.edu	37	7	25182304	25182304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138811.3	-1	validated	p.L272I	0.923	84	0%	149	36.9%	5	40%	possibly_damaging(0.945)	tolerated(0.08)	deleterious(0.690)	NULL
HOXA5	3202	genome.wustl.edu	37	7	27183130	27183130	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019102.2	-1	reviewed	p.Q33*	1.000	43	0%	63	39.7%	0	-	-	-	-	NULL
HOXA9	3205	genome.wustl.edu	37	7	27203433	27203433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152739.3	-1	reviewed	p.A203V	1.000	78	0%	186	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Homeodomain_like
HOXA9	3205	genome.wustl.edu	37	7	27209184	27209184	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000354032	-1	known	p.E28*	1.000	12	0%	21	52.4%	1	0%	-	-	-	NULL
HOXA11	3207	genome.wustl.edu	37	7	27224066	27224066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005523.5	-1	reviewed	p.A233V	1.000	4	0.000	7	0.714	5	0%	benign(0.382)	tolerated(0.08)	neutral(0.422)	superfamily_Homeodomain-like
HOXA13	3209	genome.wustl.edu	37	7	27237978	27237978	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000522.4	-1	reviewed	p.E336*	1.000	86	0%	334	43.4%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CPVL	54504	genome.wustl.edu	37	7	29035428	29035428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019029.2	-1	reviewed	p.R464Q	0.999	101	0%	105	39%	19	36.8%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
CPVL	54504	genome.wustl.edu	37	7	29152361	29152361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019029.2	-1	reviewed	p.T83P	0.998	97	0%	49	49%	5	60%	benign(0.408)	tolerated(0.16)	neutral(0.192)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
WIPF3	644150	genome.wustl.edu	37	7	29927727	29927727	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000242140	+1	known	p.A381	0.848	60	0%	45	44.4%	5	40%	-	-	-	NULL
FKBP14	55033	genome.wustl.edu	37	7	30066078	30066078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017946.2	-1	validated	p.S16Y	0.000	73	0%	129	44.2%	13	23%	benign(0.046)	tolerated(1)	neutral(0.003)	superfamily_FKBP-like
GGCT	79017	genome.wustl.edu	37	7	30538620	30538620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000433390	-1	known	p.K13N	0.006	177	0%	213	44.6%	2	50%	unknown(0)	deleterious(0)	-	NULL
FAM188B	84182	genome.wustl.edu	37	7	30915152	30915152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032222.2	+1	validated	p.V618I	1.000	337	0%	136	19.1%	7	28.5%	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	NULL
AQP1	358	genome.wustl.edu	37	7	30951534	30951534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198098.2	+1	reviewed	p.E4K	1.000	17	0%	17	52.9%	3	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_MIP,superfamily_Aquaporin-like
ADCYAP1R1	117	genome.wustl.edu	37	7	31123755	31123755	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001118.3	+1	reviewed	e6-1	0.998	408	0%	188	48.9%	0	-	-	-	-	-
CCDC129	223075	genome.wustl.edu	37	7	31682319	31682319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194300.2	+1	validated	p.Q445H	0.000	100	0%	28	50%	0	-	possibly_damaging(0.855)	deleterious(0.01)	deleterious(0.736)	NULL
FKBP9	11328	genome.wustl.edu	37	7	33014331	33014331	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007270.3	+1	validated	p.F108	0.252	175	0%	70	40%	71	38%	-	-	-	HMMPfam_FKBP_C,superfamily_SSF54534
NT5C3	51251	genome.wustl.edu	37	7	33057070	33057070	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002010.1	-1	reviewed	p.F230C	1.000	101	0%	90	54.4%	45	51.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UMPH-1,superfamily_HAD-like
NT5C3	51251	genome.wustl.edu	37	7	33057195	33057195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002010.1	-1	reviewed	p.F188L	1.000	148	0%	112	44.6%	51	56.8%	benign(0.109)	tolerated(0.38)	neutral(0.026)	HMMPfam_UMPH-1,superfamily_HAD-like
BBS9	27241	genome.wustl.edu	37	7	33217124	33217124	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198428.2	+1	reviewed	p.C121	1.000	155	0%	120	49.2%	7	57.1%	-	-	-	NULL
BBS9	27241	genome.wustl.edu	37	7	33384198	33384198	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198428.2	+1	reviewed	p.A427	0.188	480	0.2%	175	42.9%	2	50%	-	-	-	NULL
BMPER	168667	genome.wustl.edu	37	7	33946463	33946463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133468.3	+1	validated	p.V56A	0.906	96	0%	174	42.5%	0	-	benign(0.048)	tolerated(0.15)	neutral(0.244)	HMMSmart_VWC
BMPER	168667	genome.wustl.edu	37	7	34091518	34091518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133468.3	+1	validated	p.R241Q	1.000	308	0%	65	44.6%	0	-	benign(0.055)	tolerated(0.15)	neutral(0.244)	HMMPfam_VWC,HMMSmart_VWC
BMPER	168667	genome.wustl.edu	37	7	34182865	34182865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133468.3	+1	validated	p.E590A	1.000	236	0%	83	34.9%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_C8
NPSR1	387129	genome.wustl.edu	37	7	34724253	34724253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207173.1	+1	reviewed	p.K79N	1.000	315	0%	159	44.7%	0	-	benign(0.024)	deleterious(0.01)	neutral(0.407)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NPSR1	387129	genome.wustl.edu	37	7	34888192	34888192	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207173.1	+1	reviewed	p.I314	1.000	337	0%	124	41.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EEPD1	80820	genome.wustl.edu	37	7	36278601	36278601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030636.2	+1	validated	p.L296F	1.000	190	0%	221	50.7%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
AOAH	313	genome.wustl.edu	37	7	36588256	36588256	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001637.3	-1	reviewed	p.I365	0.106	174	0%	59	39%	1	0%	-	-	-	HMMPfam_Lipase_GDSL,superfamily_Esterase_SGNH_hydro-type
ELMO1	9844	genome.wustl.edu	37	7	37272719	37272719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014800.9	-1	reviewed	p.S177L	1.000	76	0%	42	42.9%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_ARM repeat
GPR141	353345	genome.wustl.edu	37	7	37780724	37780724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181791.1	+1	provisional	p.F243L	0.919	638	0%	109	44%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
TXNDC3	51314	genome.wustl.edu	37	7	37903064	37903064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016616.4	+1	reviewed	p.Q152*	0.542	221	0%	93	49.5%	1	0%	-	-	-	NULL
TXNDC3	51314	genome.wustl.edu	37	7	37907312	37907312	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016616.4	+1	reviewed	p.F210	0.998	236	0%	81	49.4%	0	-	-	-	-	superfamily_NDK
TXNDC3	51314	genome.wustl.edu	37	7	37936662	37936662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016616.4	+1	reviewed	p.N579D	0.000	78	0%	32	62.5%	0	-	benign(0.005)	tolerated(0.42)	neutral(0.014)	HMMPfam_NDK,HMMSmart_NDK,superfamily_NDK
TRGV9	6983	genome.wustl.edu	37	7	38356866	38356866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000444775	-1	known	p.R40C	0.985	124	0%	95	51.6%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
AMPH	273	genome.wustl.edu	37	7	38530740	38530740	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001635.2	-1	reviewed	p.C102W	1.000	140	0%	29	41.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_BAR,HMMSmart_SM00721
VPS41	27072	genome.wustl.edu	37	7	38783071	38783071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014396.3	-1	reviewed	p.E685K	1.000	210	0%	136	47.1%	42	38%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
VPS41	27072	genome.wustl.edu	37	7	38902155	38902155	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014396.3	-1	reviewed	p.K79M	1.000	110	0%	46	39.1%	12	50%	possibly_damaging(0.819)	tolerated(0.09)	deleterious(0.606)	superfamily_WD40 repeat-like
POU6F2	11281	genome.wustl.edu	37	7	39379354	39379354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007252.3	+1	reviewed	p.P209S	0.998	81	0%	31	64.5%	0	-	unknown(0)	tolerated(0.28)	-	NULL
RALA	5898	genome.wustl.edu	37	7	39745749	39745749	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005402.2	+1	reviewed	p.R176*	1.000	75	0%	148	47.3%	83	51.8%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000249078	0	genome.wustl.edu	37	7	39894158	39894158	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000507268	+1	known	NULL	0.771	435	0%	512	47.1%	27	0%	-	-	-	-
CDK13	8621	genome.wustl.edu	37	7	40027854	40027854	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003718.4	+1	reviewed	p.D623A	1.000	54	0%	39	46.2%	20	60%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
CDK13	8621	genome.wustl.edu	37	7	40041532	40041532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003718.4	+1	reviewed	p.E752G	1.000	57	0%	51	47.1%	8	62.5%	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDK13	8621	genome.wustl.edu	37	7	40132606	40132606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003718.4	+1	reviewed	p.S1153L	0.997	152	0%	75	45.3%	47	44.6%	possibly_damaging(0.794)	tolerated(0.1)	deleterious(0.585)	NULL
CDK13	8621	genome.wustl.edu	37	7	40133988	40133988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003718.4	+1	reviewed	p.K1316N	0.999	177	0%	84	42.9%	44	47.7%	probably_damaging(0.959)	tolerated(0.05)	deleterious(0.748)	NULL
CDK13	8621	genome.wustl.edu	37	7	40134134	40134134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003718.4	+1	reviewed	p.R1365Q	0.998	232	0%	118	38.1%	39	48.7%	possibly_damaging(0.95)	tolerated(0.13)	deleterious(0.646)	NULL
C7orf10	79783	genome.wustl.edu	37	7	40789050	40789050	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024728.1	+1	provisional	p.L365	0.000	325	0%	196	41.3%	2	50%	-	-	-	superfamily_CoA-Trfase_fam_III
GLI3	2737	genome.wustl.edu	37	7	42262814	42262814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000168.5	-1	reviewed	p.K13N	1.000	232	0%	126	42.1%	0	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
C7orf25	79020	genome.wustl.edu	37	7	42949761	42949761	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099858.1	-1	validated	p.R305	0.692	115	0%	116	37.1%	28	39.2%	-	-	-	HMMPfam_DUF1308
HECW1	23072	genome.wustl.edu	37	7	43360256	43360256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015052.3	+1	validated	p.F125L	0.970	199	0%	191	41.9%	0	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	NULL
HECW1	23072	genome.wustl.edu	37	7	43580814	43580814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015052.3	+1	validated	p.L1358I	1.000	251	0%	122	40.2%	0	-	probably_damaging(0.993)	tolerated(0.3)	deleterious(0.479)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
STK17A	9263	genome.wustl.edu	37	7	43647873	43647873	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004760.2	+1	reviewed	p.I146	1.000	104	0%	145	15.2%	24	8.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STK17A	9263	genome.wustl.edu	37	7	43663355	43663355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004760.2	+1	reviewed	p.F263S	1.000	321	0%	142	50%	20	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MYL7	58498	genome.wustl.edu	37	7	44179077	44179077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000446581	-1	known	p.L84I	0.000	20	0%	30	43.3%	0	-	unknown(0)	deleterious(0.01)	-	superfamily_EF-hand
NPC1L1	29881	genome.wustl.edu	37	7	44573450	44573450	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013389.2	-1	reviewed	p.R723	1.000	13	0%	11	63.6%	0	-	-	-	-	HMMPfam_Patched,superfamily_SSF82866
NPC1L1	29881	genome.wustl.edu	37	7	44579768	44579768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013389.2	-1	reviewed	p.K76N	0.005	70	0%	50	48%	0	-	benign(0.068)	tolerated(0.3)	neutral(0.033)	NULL
DDX56	54606	genome.wustl.edu	37	7	44613306	44613306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019082.2	-1	reviewed	p.I33S	1.000	14	0%	20	40%	53	35.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMED4	222068	genome.wustl.edu	37	7	44621131	44621131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182547.2	-1	provisional	p.F102L	1.000	47	0%	49	44.9%	81	48.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_EMP24_GP25L
MYO1G	64005	genome.wustl.edu	37	7	45004020	45004020	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033054.2	-1	validated	p.V875	1.000	77	0%	87	49.4%	8	0%	-	-	-	HMMPfam_Myosin_TH1
TBRG4	9238	genome.wustl.edu	37	7	45141963	45141963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004749.2	-1	validated	p.F435C	0.038	54	0%	57	56.1%	69	30.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_FAST_1
IGFBP3	3486	genome.wustl.edu	37	7	45956251	45956251	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013398.1	-1	reviewed	p.E222*	1.000	181	0%	115	48.7%	148	0.6%	-	-	-	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
PKD1L1	168507	genome.wustl.edu	37	7	47852787	47852787	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000433506	-1	known	p.R17C	0.000	225	0%	109	48.6%	0	-	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47873974	47873974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138295.2	-1	reviewed	p.S2046Y	0.025	283	0%	148	44.6%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
SUN3	256979	genome.wustl.edu	37	7	48033985	48033985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001030019.1	-1	validated	p.T263N	1.000	268	0%	119	52.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sad1_UNC
SUN3	256979	genome.wustl.edu	37	7	48046884	48046884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001030019.1	-1	validated	p.L124I	0.988	209	0%	134	46.3%	0	-	benign(0.409)	tolerated(0.13)	neutral(0.385)	NULL
C7orf57	136288	genome.wustl.edu	37	7	48092408	48092408	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100159.1	+1	validated	p.P239	0.000	58	0%	27	14.8%	0	-	-	-	-	NULL
UPP1	7378	genome.wustl.edu	37	7	48146991	48146991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003364.2	+1	validated	p.Y227S	1.000	97	0%	21	66.7%	17	17.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
ABCA13	154664	genome.wustl.edu	37	7	48288848	48288848	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152701.3	+1	reviewed	p.E635	0.004	75	0%	35	31.4%	0	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48315060	48315060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152701.3	+1	reviewed	p.N1933H	0.077	38	0%	31	41.9%	0	-	probably_damaging(0.979)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48316047	48316047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152701.3	+1	reviewed	p.D2262Y	0.011	17	0%	15	46.7%	0	-	possibly_damaging(0.564)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48318337	48318337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152701.3	+1	reviewed	p.A2516T	0.002	49	0%	51	41.2%	0	-	probably_damaging(0.957)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48377972	48377972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152701.3	+1	reviewed	p.R3375I	0.469	112	0%	68	32.4%	0	-	benign(0)	-	-	NULL
ZPBP	11055	genome.wustl.edu	37	7	50057901	50057901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007009.2	-1	validated	p.D240Y	0.997	271	0%	47	38.3%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	HMMPfam_Sp38
GRB10	2887	genome.wustl.edu	37	7	50685735	50685735	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000428711	-1	known	p.*109Y	0.000	110	0%	68	44.1%	0	-	-	-	-	NULL
GRB10	2887	genome.wustl.edu	37	7	50685748	50685748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000428711	-1	known	p.S105Y	0.000	117	0%	80	15%	0	-	unknown(0)	-	-	NULL
POM121L12	285877	genome.wustl.edu	37	7	53103695	53103695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182595.3	+1	validated	p.D111Y	0.000	13	0.000	6	0.667	0	-	probably_damaging(0.97)	tolerated(0.11)	deleterious(0.684)	NULL
POM121L12	285877	genome.wustl.edu	37	7	53103782	53103782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182595.3	+1	validated	p.G140W	0.001	15	0.000	8	0.625	0	-	possibly_damaging(0.784)	deleterious(0.02)	deleterious(0.676)	NULL
VSTM2A	222008	genome.wustl.edu	37	7	54610472	54610472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182546.2	+1	validated	p.L17V	0.074	109	0%	667	38.8%	0	-	benign(0.38)	deleterious(0.01)	deleterious(0.527)	NULL
EGFR	1956	genome.wustl.edu	37	7	55259436	55259436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005228.3	+1	reviewed	p.R832C	1.000	159	0%	28	67.9%	5	40%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SEPT14	346288	genome.wustl.edu	37	7	55910781	55910781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207366.2	-1	validated	p.A138T	0.997	121	0%	180	40%	0	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC441228	441228	genome.wustl.edu	37	7	56357950	56357950	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_016387.3	+1	model	NULL	1.000	256	0%	175	44.6%	0	-	-	-	-	-
LOC441228	441228	genome.wustl.edu	37	7	56359304	56359304	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_016387.3	+1	model	NULL	0.001	48	0%	38	44.7%	0	-	-	-	-	-
LOC100289196	100289196	genome.wustl.edu	37	7	56671228	56671228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342722.1	+1	model	p.K42N	0.997	40	0%	46	30.4%	1	0%	-	-	-	NULL
ZNF479	90827	genome.wustl.edu	37	7	57188408	57188408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033273.1	-1	provisional	p.E238D	1.000	177	0%	99	43.4%	0	-	benign(0.085)	deleterious(0.04)	neutral(0.355)	superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57193728	57193728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033273.1	-1	provisional	p.P87S	0.374	429	0%	201	46.8%	0	-	benign(0.077)	tolerated(0.17)	neutral(0.065)	NULL
ZNF716	441234	genome.wustl.edu	37	7	57529616	57529616	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342727.1	+1	model	p.K400	0.802	44	0%	36	33.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF679	168417	genome.wustl.edu	37	7	63721288	63721288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153363.2	+1	validated	p.E81D	0.002	323	0%	162	46.9%	0	-	benign(0.098)	tolerated(0.08)	neutral(0.307)	NULL
ZNF679	168417	genome.wustl.edu	37	7	63726958	63726958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153363.2	+1	validated	p.R316I	1.000	47	0%	28	42.9%	0	-	benign(0.008)	tolerated(0.29)	neutral(0.029)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF107	51427	genome.wustl.edu	37	7	64167944	64167944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013746.1	+1	validated	p.F421C	0.900	44	0%	49	42.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF273	10793	genome.wustl.edu	37	7	64389223	64389223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021148.2	+1	reviewed	p.R506I	0.342	57	0%	59	50.8%	12	50%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439479	64439479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015852.3	-1	validated	p.R157I	0.857	81	0%	53	49.1%	4	25%	benign(0.26)	tolerated(0.07)	neutral(0.346)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ERV3-1	2086	genome.wustl.edu	37	7	64451822	64451822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007253.3	-1	reviewed	p.E528G	0.469	168	0%	83	41%	9	66.6%	possibly_damaging(0.662)	deleterious(0.01)	deleterious(0.640)	NULL
ERV3-1	2086	genome.wustl.edu	37	7	64452582	64452582	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007253.3	-1	reviewed	p.L275V	0.673	192	0%	85	43.5%	6	66.6%	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
ZNF92	168374	genome.wustl.edu	37	7	64863354	64863354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152626.2	+1	validated	p.E109D	0.554	120	0%	81	58%	13	38.4%	benign(0.016)	tolerated(0.47)	neutral(0.011)	NULL
ZNF92	168374	genome.wustl.edu	37	7	64864658	64864658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152626.2	+1	validated	p.K544R	1.000	39	0%	31	54.8%	13	53.8%	probably_damaging(0.964)	tolerated(0.07)	deleterious(0.726)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VKORC1L1	154807	genome.wustl.edu	37	7	65419231	65419231	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173517.3	+1	validated	p.R159*	1.000	150	0%	62	48.4%	44	45.4%	-	-	-	HMMPfam_VKOR,HMMSmart_VKc
TPST1	8460	genome.wustl.edu	37	7	65705856	65705856	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003596.3	+1	validated	p.K148	1.000	49	0%	54	50%	13	61.5%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000230189	0	genome.wustl.edu	37	7	65946587	65946587	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000429320	-1	known	NULL	0.674	6	0.000	8	0.500	0	-	-	-	-	-
CALN1	83698	genome.wustl.edu	37	7	71868316	71868316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031468.3	-1	validated	p.E13D	1.000	111	0%	21	52.4%	0	-	unknown(0)	-	-	NULL
FZD9	8326	genome.wustl.edu	37	7	72848926	72848926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003508.2	+1	reviewed	p.E197K	1.000	4	0.000	11	0.455	0	-	benign(0.003)	tolerated(0.77)	neutral(0.001)	NULL
TBL2	26608	genome.wustl.edu	37	7	72985061	72985061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012453.2	-1	reviewed	p.E374K	0.999	22	0%	21	52.4%	53	35.8%	benign(0.035)	tolerated(0.5)	neutral(0.012)	HMMSmart_WD40,superfamily_WD40_like
POM121C	100101267	genome.wustl.edu	37	7	75053498	75053498	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099415.1	-1	validated	p.S294	0.000	326	0%	207	43.5%	32	31.2%	-	-	-	NULL
SPDYE5	442590	genome.wustl.edu	37	7	75131244	75131244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099435.2	+1	validated	p.R333C	0.025	78	0%	100	48%	0	-	-	-	-	NULL
STYXL1	51657	genome.wustl.edu	37	7	75633163	75633163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016086.2	-1	validated	p.D204N	0.003	93	0%	55	45.5%	41	36.5%	benign(0.006)	tolerated(0.61)	neutral(0.004)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
LOC100288807	100288807	genome.wustl.edu	37	7	76163028	76163028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342739.1	-1	model	p.R571C	0.007	143	0%	155	50.3%	2	0%	-	-	-	NULL
CCDC146	57639	genome.wustl.edu	37	7	76885729	76885729	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020879.2	+1	validated	p.I196S	1.000	79	0%	70	57.1%	2	0%	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76908404	76908404	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020879.2	+1	validated	p.A560	0.012	115	0%	70	40%	5	40%	-	-	-	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77325856	77325856	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198467.2	+1	validated	p.E24*	0.980	21	0%	15	26.7%	5	80%	-	-	-	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77365791	77365791	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198467.2	+1	validated	p.K217	1.000	118	0%	221	45.2%	5	0%	-	-	-	NULL
PHTF2	57157	genome.wustl.edu	37	7	77549602	77549602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127357.1	+1	validated	p.K227N	1.000	58	0%	36	47.2%	7	57.1%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
PHTF2	57157	genome.wustl.edu	37	7	77569585	77569585	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127357.1	+1	validated	p.F535C	1.000	446	0%	319	44.5%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77807393	77807393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012301.3	-1	reviewed	p.H780N	1.000	66	0%	17	47.1%	0	-	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	HMMPfam_PDZ,superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	77973208	77973208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012301.3	-1	reviewed	p.S432I	1.000	313	0%	85	45.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,superfamily_PDZ domain-like
GNAT3	346562	genome.wustl.edu	37	7	80088112	80088112	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102386.1	-1	provisional	p.K314Q	1.000	140	0%	82	41.5%	0	-	possibly_damaging(0.479)	tolerated(0.13)	neutral(0.411)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD36	948	genome.wustl.edu	37	7	80292313	80292313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000072.3	+1	reviewed	p.S146F	0.019	249	0%	143	44.1%	2	100%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_CD36
CACNA2D1	781	genome.wustl.edu	37	7	81594916	81594916	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000722.2	-1	reviewed	p.T856	0.450	163	0%	27	55.6%	0	-	-	-	-	NULL
CACNA2D1	781	genome.wustl.edu	37	7	81714154	81714154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000722.2	-1	reviewed	p.R197C	1.000	173	0%	96	40.6%	0	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	HMMPfam_VWA_N
PCLO	27445	genome.wustl.edu	37	7	82545765	82545765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033026.5	-1	validated	p.R3846Q	1.000	646	0%	117	46.2%	4	75%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
PCLO	27445	genome.wustl.edu	37	7	82583837	82583837	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033026.5	-1	validated	p.E2144	1.000	281	0%	65	53.8%	1	0%	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82584922	82584922	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033026.5	-1	validated	p.E1783*	1.000	198	0%	69	33.3%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82764499	82764499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033026.5	-1	validated	p.E789D	0.767	750	0%	366	41%	0	-	benign(0.026)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82784171	82784171	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033026.5	-1	validated	p.E596*	1.000	205	0%	176	43.2%	2	100%	-	-	-	HMMPfam_zf-piccolo,superfamily_FYVE/PHD zinc finger
PCLO	27445	genome.wustl.edu	37	7	82785221	82785221	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033026.5	-1	validated	p.K246Q	0.931	265	0%	277	44.8%	0	-	unknown(0)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82785303	82785303	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033026.5	-1	validated	p.P218	0.003	416	0.2%	410	50%	0	-	-	-	-	NULL
SEMA3E	9723	genome.wustl.edu	37	7	83026004	83026004	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012431.2	-1	reviewed	p.E470*	1.000	203	0%	112	44.6%	2	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA3E	9723	genome.wustl.edu	37	7	83035320	83035320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012431.2	-1	reviewed	p.A290V	0.998	190	0%	56	37.5%	9	0%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA3A	10371	genome.wustl.edu	37	7	83592651	83592651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006080.2	-1	reviewed	p.G577V	0.991	171	0%	58	65.5%	3	33.3%	benign(0.021)	tolerated(0.28)	neutral(0.033)	superfamily_SSF48726
KIAA1324L	222223	genome.wustl.edu	37	7	86539156	86539156	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142749.2	-1	validated	p.Q777H	0.987	179	0%	38	52.6%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	superfamily_Mannose 6-phosphate receptor domain
KIAA1324L	222223	genome.wustl.edu	37	7	86544093	86544093	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000423294	-1	known	p.E520*	1.000	339	0%	102	38.2%	1	100%	probably_damaging(0.975)	tolerated(0.07)	deleterious(0.736)	superfamily_Growth factor receptor domain
DMTF1	9988	genome.wustl.edu	37	7	86824045	86824045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142327.1	+1	reviewed	p.D692Y	1.000	186	0%	35	37.1%	9	44.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CROT	54677	genome.wustl.edu	37	7	86990850	86990850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143935.1	+1	reviewed	p.L157I	0.502	198	0%	75	34.7%	4	75%	benign(0.032)	tolerated(0.45)	neutral(0.013)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ABCB4	5244	genome.wustl.edu	37	7	87032585	87032585	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018849.2	-1	reviewed	p.R1174*	0.621	183	0%	70	54.3%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB4	5244	genome.wustl.edu	37	7	87041263	87041263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018849.2	-1	reviewed	p.R957Q	1.000	82	0%	44	43.2%	0	-	possibly_damaging(0.823)	tolerated(0.09)	deleterious(0.608)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87043015	87043015	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018849.2	-1	reviewed	p.E901*	1.000	190	0%	92	41.3%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87047909	87047909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018849.2	-1	reviewed	p.N808Y	1.000	135	0%	47	44.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87083873	87083873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018849.2	-1	reviewed	p.I108F	1.000	48	0%	62	12.9%	0	-	benign(0.023)	tolerated(0.19)	neutral(0.051)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB4	5244	genome.wustl.edu	37	7	87092212	87092212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018849.2	-1	reviewed	p.D50N	1.000	75	0%	42	38.1%	0	-	benign(0.02)	tolerated(0.87)	neutral(0.002)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87180059	87180059	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000927.3	-1	reviewed	p.I365	1.000	353	0%	157	47.8%	2	100%	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87190589	87190589	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000927.3	-1	reviewed	p.E273*	1.000	148	0%	77	54.5%	2	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87214997	87214997	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000927.3	-1	reviewed	e3-1	1.000	116	0%	45	33.3%	0	-	-	-	-	-
RUNDC3B	154661	genome.wustl.edu	37	7	87369112	87369112	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138290.2	+1	validated	p.F172C	1.000	55	0%	47	48.9%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RUN,HMMSmart_SM00593
DBF4	10926	genome.wustl.edu	37	7	87514427	87514427	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006716.3	+1	validated	p.S118*	1.000	118	0%	69	36.2%	18	44.4%	-	-	-	NULL
STEAP4	79689	genome.wustl.edu	37	7	87911988	87911988	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024636.2	-1	validated	p.R318*	0.216	50	0%	26	30.8%	0	-	-	-	-	HMMPfam_Ferric_reduct
STEAP4	79689	genome.wustl.edu	37	7	87913353	87913353	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024636.2	-1	validated	p.I78L	0.007	170	0%	71	45.1%	0	-	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
C7orf62	219557	genome.wustl.edu	37	7	88423588	88423588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152706.2	-1	predicted	p.F223L	0.705	266	0%	25	52%	0	-	benign(0.001)	tolerated(1)	-	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965421	88965421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181646.2	+1	provisional	p.I1042T	0.770	94	0%	27	48.1%	0	-	benign(0.006)	tolerated(0.22)	neutral(0.042)	NULL
STEAP1	26872	genome.wustl.edu	37	7	89793950	89793950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012449.2	+1	reviewed	p.L308I	0.923	128	0%	95	48.4%	21	57.1%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
C7orf63	79846	genome.wustl.edu	37	7	89937135	89937135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039706.2	+1	validated	p.F793L	0.997	161	0%	49	51%	1	0%	probably_damaging(0.961)	tolerated(0.07)	deleterious(0.723)	NULL
GTPBP10	85865	genome.wustl.edu	37	7	89982136	89982136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033107.2	+1	validated	p.N14H	1.000	309	0%	163	40.5%	4	25%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	superfamily_Obg GTP-binding protein N-terminal domain
CDK14	5218	genome.wustl.edu	37	7	90377084	90377084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012395.2	+1	validated	p.K135T	1.000	127	0%	136	44.9%	8	62.5%	possibly_damaging(0.919)	deleterious(0.02)	deleterious(0.752)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
AKAP9	10142	genome.wustl.edu	37	7	91674508	91674508	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005751.4	+1	reviewed	p.V1783	0.618	76	0%	17	29.4%	4	50%	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91709428	91709428	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005751.4	+1	reviewed	p.E2661*	0.073	7	0.000	22	0.500	1	0%	-	-	-	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91793307	91793307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000430130	-1	known	p.D404Y	1.000	55	0%	82	48.8%	0	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
ENSG00000240720	0	genome.wustl.edu	37	7	91793737	91793737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000430130	-1	known	p.E260D	1.000	19	0%	34	52.9%	0	-	possibly_damaging(0.892)	tolerated(0.11)	deleterious(0.623)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
CDK6	1021	genome.wustl.edu	37	7	92247413	92247413	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145306.1	-1	reviewed	p.I269	0.751	152	0%	47	48.9%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SAMD9	54809	genome.wustl.edu	37	7	92732791	92732791	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017654.2	-1	validated	p.E874*	0.818	39	0%	67	49.3%	2	0%	-	-	-	NULL
SAMD9	54809	genome.wustl.edu	37	7	92732941	92732941	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017654.2	-1	validated	p.R824*	0.704	53	0%	46	39.1%	0	-	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92762382	92762382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152703.2	-1	validated	p.S968Y	0.674	279	0.4%	33	45.5%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763008	92763008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152703.2	-1	validated	p.K759N	0.824	291	0%	27	44.4%	1	0%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763714	92763714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152703.2	-1	validated	p.E524A	0.987	101	0%	24	45.8%	0	-	benign(0.079)	tolerated(0.29)	neutral(0.035)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763983	92763983	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152703.2	-1	validated	p.F434L	0.924	172	0%	34	26.5%	1	0%	possibly_damaging(0.465)	deleterious(0)	deleterious(0.598)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764304	92764304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152703.2	-1	validated	p.I327M	0.000	309	0%	62	50%	1	0%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764936	92764936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152703.2	-1	validated	p.S117P	0.359	404	0%	101	19.8%	1	0%	possibly_damaging(0.528)	deleterious(0.03)	deleterious(0.542)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92881984	92881984	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017667.2	+1	validated	p.R41*	1.000	109	0%	56	37.5%	4	0%	-	-	-	NULL
CCDC132	55610	genome.wustl.edu	37	7	92923898	92923898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017667.2	+1	validated	p.R373C	1.000	72	0%	63	41.3%	10	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92970744	92970744	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017667.2	+1	validated	p.V688	0.736	268	0%	106	45.3%	15	60%	-	-	-	NULL
BET1	10282	genome.wustl.edu	37	7	93628483	93628483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005868.4	-1	reviewed	p.S48Y	1.000	145	0%	116	36.2%	25	32%	benign(0.074)	tolerated(0.07)	neutral(0.324)	HMMPfam_SNARE,HMMSmart_SM00397
COL1A2	1278	genome.wustl.edu	37	7	94059651	94059651	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000089.3	+1	reviewed	p.I1349	0.999	208	0%	80	50%	433	8.3%	-	-	-	HMMPfam_COLFI,HMMSmart_SM00038
CASD1	64921	genome.wustl.edu	37	7	94176473	94176473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022900.4	+1	validated	p.L567V	1.000	270	0%	134	44.8%	4	50%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cas1p
PPP1R9A	55607	genome.wustl.edu	37	7	94539466	94539466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017650.2	+1	validated	p.R14K	1.000	24	0%	27	37%	3	33.3%	unknown(0)	deleterious(0)	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94539496	94539496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017650.2	+1	validated	p.R24Q	1.000	28	0%	30	43.3%	2	100%	unknown(0)	tolerated(0.12)	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94539619	94539619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017650.2	+1	validated	p.R65I	1.000	31	0%	45	37.8%	0	-	unknown(0)	deleterious(0)	-	NULL
PPP1R9A	55607	genome.wustl.edu	37	7	94539735	94539735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017650.2	+1	validated	p.E104*	1.000	32	0%	64	51.6%	0	-	-	-	-	NULL
PON1	5444	genome.wustl.edu	37	7	94931555	94931555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000446.5	-1	reviewed	p.I291L	0.802	116	0%	77	44.2%	0	-	benign(0)	tolerated(1)	-	superfamily_Calcium-dependent phosphotriesterase
PON3	5446	genome.wustl.edu	37	7	94991715	94991715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000940.2	-1	reviewed	p.K289E	1.000	139	0%	40	52.5%	0	-	-	-	-	superfamily_Calcium-dependent phosphotriesterase
DYNC1I1	1780	genome.wustl.edu	37	7	95457425	95457425	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004411.4	+1	validated	p.L141R	1.000	889	0%	167	37.7%	0	-	benign(0.17)	deleterious(0)	neutral(0.460)	superfamily_WD40 repeat-like
SLC25A13	10165	genome.wustl.edu	37	7	95814246	95814246	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014251.2	-1	reviewed	p.V337	0.997	139	0%	91	52.7%	26	38.4%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A13	10165	genome.wustl.edu	37	7	95820501	95820501	+	Missense_Mutation	SNP	G	G	A	rs80338719	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014251.2	-1	reviewed	p.S225L	1.000	269	0%	103	35%	25	44%	benign(0.123)	deleterious(0)	neutral(0.455)	superfamily_SSF47473
SHFM1	7979	genome.wustl.edu	37	7	96324195	96324195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006304.1	-1	reviewed	p.G29S	1.000	485	0%	92	57.6%	1023	40.8%	benign(0.226)	tolerated(0.51)	neutral(0.032)	HMMPfam_DSS1_SEM1
LMTK2	22853	genome.wustl.edu	37	7	97821707	97821707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014916.3	+1	reviewed	p.D644Y	0.050	28	0%	49	36.7%	6	16.6%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
BAIAP2L1	55971	genome.wustl.edu	37	7	97939785	97939785	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018842.4	-1	reviewed	p.P309	0.018	121	0%	185	51.9%	26	26.9%	-	-	-	NULL
TMEM130	222865	genome.wustl.edu	37	7	98449064	98449064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134450.1	-1	validated	p.K329T	0.248	186	0%	90	42.2%	5	0%	benign(0.147)	tolerated(0.05)	neutral(0.358)	superfamily_PKD domain
TRRAP	8295	genome.wustl.edu	37	7	98479609	98479609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003496.2	+1	validated	p.K38Q	1.000	181	0%	371	48.2%	4	25%	unknown(0)	tolerated(0.09)	-	NULL
TRRAP	8295	genome.wustl.edu	37	7	98479639	98479639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003496.2	+1	validated	p.N48H	1.000	171	0%	348	43.4%	4	50%	unknown(0)	tolerated(0.36)	-	NULL
TRRAP	8295	genome.wustl.edu	37	7	98507684	98507684	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000456197	+1	known	p.S167L	1.000	56	0%	45	42.2%	3	33.3%	-	-	-	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98579409	98579409	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000456197	+1	known	p.R2599Q	0.003	29	0%	14	57.1%	40	50%	-	-	-	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase
KPNA7	402569	genome.wustl.edu	37	7	98775641	98775641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145715.1	-1	validated	p.E456*	1.000	550	0%	196	49.5%	0	-	-	-	-	superfamily_ARM-type_fold
ZNF789	285989	genome.wustl.edu	37	7	99084495	99084495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213603.2	+1	validated	p.R221I	0.823	108	0%	103	42.7%	8	62.5%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF789	285989	genome.wustl.edu	37	7	99084983	99084983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213603.2	+1	validated	p.L384I	0.046	158	0%	159	45.9%	13	53.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CYP3A4	1576	genome.wustl.edu	37	7	99355842	99355842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017460.3	-1	reviewed	p.K476E	0.352	177	0%	84	44%	0	-	benign(0.024)	tolerated(0.37)	neutral(0.020)	HMMPfam_p450,superfamily_Cytochrome P450
CYP3A4	1576	genome.wustl.edu	37	7	99358502	99358502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017460.3	-1	reviewed	p.M452I	1.000	623	0.2%	360	42.8%	0	-	benign(0.014)	tolerated(0.34)	neutral(0.024)	HMMPfam_p450,superfamily_Cytochrome P450
TRIM4	89122	genome.wustl.edu	37	7	99501222	99501222	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033017.2	-1	reviewed	e5-1	1.000	116	0%	103	37.9%	5	100%	-	-	-	-
ZNF3	7551	genome.wustl.edu	37	7	99672832	99672832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032924.3	-1	validated	p.K66T	0.998	227	0%	142	45.8%	23	52.1%	possibly_damaging(0.793)	tolerated(0.31)	neutral(0.325)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZCWPW1	55063	genome.wustl.edu	37	7	99998874	99998874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017984.3	-1	validated	p.K570N	0.002	194	0%	42	57.1%	0	-	possibly_damaging(0.903)	-	-	NULL
FBXO24	26261	genome.wustl.edu	37	7	100187668	100187668	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033506.2	+1	reviewed	p.P36	0.788	52	0%	37	37.8%	0	-	-	-	-	superfamily_F-box domain
FBXO24	26261	genome.wustl.edu	37	7	100192016	100192016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033506.2	+1	reviewed	p.K268N	1.000	48	0%	45	33.3%	0	-	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	superfamily_RCC1/BLIP-II
FBXO24	26261	genome.wustl.edu	37	7	100192793	100192793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033506.2	+1	reviewed	p.A341S	1.000	90	0%	50	40%	1	0%	possibly_damaging(0.812)	tolerated(0.14)	deleterious(0.555)	superfamily_RCC1/BLIP-II
FBXO24	26261	genome.wustl.edu	37	7	100193271	100193271	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033506.2	+1	reviewed	p.N383T	1.000	113	0%	96	41.7%	1	100%	possibly_damaging(0.916)	deleterious(0.04)	deleterious(0.716)	superfamily_RCC1/BLIP-II
ZAN	7455	genome.wustl.edu	37	7	100336166	100336166	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003386.1	+1	reviewed	p.K232	0.999	69	0%	83	50.6%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
ZAN	7455	genome.wustl.edu	37	7	100373384	100373384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003386.1	+1	reviewed	p.R2040S	0.000	107	0%	129	48.8%	0	-	unknown(0)	tolerated(0.86)	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100377078	100377078	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003386.1	+1	reviewed	p.V2109	0.000	41	0%	29	37.9%	0	-	unknown(0)	tolerated(0.13)	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100386927	100386927	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003386.1	+1	reviewed	p.P2438	0.598	166	0%	77	41.6%	0	-	benign(0.049)	tolerated(0.3)	neutral(0.032)	NULL
MUC12	10071	genome.wustl.edu	37	7	100634997	100634997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000379442	+1	known	p.E528K	0.727	938	0%	447	30%	0	-	unknown(0)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100639899	100639899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000379442	+1	known	p.T2162A	0.053	1042	0%	947	12.6%	0	-	unknown(0)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100656367	100656367	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000379442	+1	known	p.S5337	0.000	196	0%	66	47%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100675959	100675959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040105.1	+1	provisional	p.K421T	0.001	261	0%	192	47.9%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100678044	100678044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040105.1	+1	provisional	p.S1116Y	0.003	324	0.3%	241	36.1%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100681761	100681761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040105.1	+1	provisional	p.T2355I	0.001	184	0%	186	45.2%	0	-	possibly_damaging(0.741)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100682595	100682595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040105.1	+1	provisional	p.T2633I	0.004	167	0%	185	43.2%	0	-	probably_damaging(0.982)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100684768	100684768	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040105.1	+1	provisional	p.A3357	0.001	164	0%	240	43.8%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100685396	100685396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040105.1	+1	provisional	p.R3567S	0.000	85	0%	132	47%	0	-	probably_damaging(0.98)	-	-	NULL
SERPINE1	5054	genome.wustl.edu	37	7	100771699	100771699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000602.3	+1	reviewed	p.C9G	1.000	264	0%	45	42.2%	6	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MOGAT3	346606	genome.wustl.edu	37	7	100843789	100843789	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178176.2	-1	provisional	p.F39	0.086	88	0%	119	44.5%	0	-	-	-	-	NULL
RABL5	64792	genome.wustl.edu	37	7	100962340	100962340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000430911	-1	known	p.R15I	0.001	152	0%	139	45.3%	0	-	unknown(0)	-	-	NULL
MYL10	93408	genome.wustl.edu	37	7	101267464	101267464	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138403.4	-1	validated	p.Q53	1.000	96	0%	60	60%	0	-	-	-	-	NULL
LOC100289561	100289561	genome.wustl.edu	37	7	102016391	102016391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342746.1	+1	model	p.S46Y	0.785	728	0%	409	41.1%	28	50%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
FBXL13	222235	genome.wustl.edu	37	7	102553597	102553597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145032.3	-1	validated	p.Q315P	0.727	154	0%	82	35.4%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMSmart_SM00367,superfamily_RNI-like
NFE4	58160	genome.wustl.edu	37	7	102616628	102616628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001085386.1	+1	reviewed	p.Q169P	0.043	188	0%	49	14.3%	0	-	-	-	-	NULL
DNAJC2	27000	genome.wustl.edu	37	7	102964084	102964084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014377.1	-1	reviewed	p.F227C	1.000	76	0%	166	47%	23	34.7%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
RELN	5649	genome.wustl.edu	37	7	103131232	103131232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.S3163Y	1.000	223	0%	85	49.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RELN	5649	genome.wustl.edu	37	7	103136237	103136237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.D3101G	1.000	554	0%	116	45.7%	1	0%	possibly_damaging(0.485)	tolerated(0.22)	neutral(0.203)	superfamily_Sialidase
RELN	5649	genome.wustl.edu	37	7	103155784	103155784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.D2656G	1.000	72	0%	21	42.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Sialidase
RELN	5649	genome.wustl.edu	37	7	103205953	103205953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.S1661Y	0.999	114	0%	34	52.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RELN	5649	genome.wustl.edu	37	7	103234132	103234132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.F1303L	1.000	201	0%	65	53.8%	0	-	possibly_damaging(0.678)	deleterious(0)	deleterious(0.686)	NULL
RELN	5649	genome.wustl.edu	37	7	103294597	103294597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.K499N	1.000	518	0%	76	36.8%	0	-	benign(0.304)	tolerated(0.13)	neutral(0.347)	NULL
RELN	5649	genome.wustl.edu	37	7	103301965	103301965	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.V433	0.979	164	0%	42	52.4%	0	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103341439	103341439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.R274C	1.000	169	0%	44	50%	0	-	possibly_damaging(0.806)	tolerated(0.06)	deleterious(0.626)	NULL
RELN	5649	genome.wustl.edu	37	7	103363625	103363625	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005045.3	-1	reviewed	p.L256R	0.999	107	0%	68	50%	0	-	possibly_damaging(0.528)	deleterious(0)	deleterious(0.623)	NULL
LHFPL3	375612	genome.wustl.edu	37	7	104377356	104377356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199000.2	+1	reviewed	p.K227R	1.000	152	0%	36	50%	0	-	possibly_damaging(0.58)	tolerated(0.17)	neutral(0.258)	NULL
MLL5	55904	genome.wustl.edu	37	7	104717562	104717562	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018682.3	+1	reviewed	p.L307	0.995	233	0%	83	44.6%	9	44.4%	-	-	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104746993	104746993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018682.3	+1	reviewed	p.R874Q	1.000	155	0%	86	31.4%	5	0%	unknown(0)	deleterious(0.01)	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104747135	104747135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018682.3	+1	reviewed	p.E921D	0.998	183	0%	88	48.9%	4	75%	unknown(0)	deleterious(0.01)	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104747620	104747620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018682.3	+1	reviewed	p.S952Y	1.000	53	0%	127	37.8%	7	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MLL5	55904	genome.wustl.edu	37	7	104747884	104747884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018682.3	+1	reviewed	p.E994*	1.000	99	0%	88	38.6%	18	38.8%	-	-	-	NULL
ATXN7L1	222255	genome.wustl.edu	37	7	105516933	105516933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020725.1	-1	validated	p.Q24H	1.000	95	0%	100	43%	1	100%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
CDHR3	222256	genome.wustl.edu	37	7	105664947	105664947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152750.4	+1	validated	p.L733I	0.961	340	0%	153	36.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CDHR3	222256	genome.wustl.edu	37	7	105669001	105669001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000343407	+1	known	p.E260K	0.584	118	0%	76	42.1%	0	-	unknown(0)	deleterious(0)	-	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106526602	106526602	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002649.2	+1	reviewed	p.F965	1.000	202	0%	138	44.9%	1	0%	-	-	-	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
COG5	10466	genome.wustl.edu	37	7	106924173	106924173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006348.3	-1	validated	p.E471K	1.000	196	0%	135	48.9%	11	45.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SLC26A4	5172	genome.wustl.edu	37	7	107334850	107334850	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000441.1	+1	reviewed	p.V422	0.994	247	0%	40	25%	1	0%	-	-	-	HMMPfam_Sulfate_transp
SLC26A3	1811	genome.wustl.edu	37	7	107423262	107423262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000111.2	-1	reviewed	p.L431I	1.000	139	0%	47	38.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sulfate_transp
LAMB1	3912	genome.wustl.edu	37	7	107571810	107571810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002291.2	-1	reviewed	p.F1510V	1.000	264	0%	229	43.2%	68	38.2%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107684324	107684324	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007356.2	-1	validated	p.E1448	0.122	445	0%	276	46%	0	-	-	-	-	NULL
LAMB4	22798	genome.wustl.edu	37	7	107696164	107696164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007356.2	-1	validated	p.N1223S	0.001	122	0%	70	44.3%	0	-	benign(0.007)	tolerated(0.42)	neutral(0.014)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107696272	107696272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007356.2	-1	validated	p.S1187Y	0.466	88	0%	71	36.6%	0	-	possibly_damaging(0.886)	tolerated(0.05)	deleterious(0.692)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107704399	107704399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007356.2	-1	validated	p.F956L	1.000	234	0%	88	46.6%	1	0%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107732123	107732123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007356.2	-1	validated	p.F550S	1.000	105	0%	52	48.1%	0	-	possibly_damaging(0.912)	deleterious(0.04)	deleterious(0.712)	HMMSmart_SM00180,superfamily_EGF/Laminin
NRCAM	4897	genome.wustl.edu	37	7	107807483	107807483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037132.1	-1	reviewed	p.S1117P	1.000	115	0%	229	46.3%	2	100%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PNPLA8	50640	genome.wustl.edu	37	7	108137033	108137033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015723.2	-1	provisional	p.I540M	0.997	130	0%	91	49.5%	27	37%	benign(0.193)	tolerated(0.21)	neutral(0.062)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
THAP5	168451	genome.wustl.edu	37	7	108204963	108204963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130475.1	-1	validated	p.S287Y	0.846	133	0%	230	41.3%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111512134	111512134	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014705.3	-1	reviewed	p.N647H	1.000	66	0%	99	53.5%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111512549	111512549	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014705.3	-1	reviewed	p.E606*	1.000	170	0.6%	176	43.2%	0	-	-	-	-	NULL
DOCK4	9732	genome.wustl.edu	37	7	111584867	111584867	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000445943	-1	known	p.S269L	0.119	301	0%	134	45.5%	0	-	-	-	-	NULL
C7orf60	154743	genome.wustl.edu	37	7	112462269	112462269	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152556.2	-1	validated	p.F250V	1.000	90	0%	41	36.6%	5	40%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113519907	113519907	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002711.3	-1	reviewed	p.E414*	0.063	194	0%	41	48.8%	0	-	-	-	-	NULL
FOXP2	93986	genome.wustl.edu	37	7	114298185	114298185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148898.2	+1	reviewed	p.P469H	1.000	155	0%	33	24.2%	0	-	possibly_damaging(0.598)	deleterious(0.01)	deleterious(0.613)	NULL
TFEC	22797	genome.wustl.edu	37	7	115581945	115581945	+	Splice_Site	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012252.2	-1	validated	e6+2	1.000	188	0%	45	40%	0	-	-	-	-	-
TFEC	22797	genome.wustl.edu	37	7	115582093	115582093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012252.2	-1	validated	p.D173Y	1.000	256	0%	67	41.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MET	4233	genome.wustl.edu	37	7	116371806	116371806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127500.1	+1	reviewed	p.L429V	1.000	320	0%	50	46%	4	50%	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CAPZA2	830	genome.wustl.edu	37	7	116544373	116544373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006136.2	+1	reviewed	p.R121I	1.000	161	0%	77	50.6%	82	43.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F-actin_cap_A,superfamily_Subunits of heterodimeric actin filament capping protein Capz
WNT2	7472	genome.wustl.edu	37	7	116955202	116955202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003391.2	-1	reviewed	p.F171L	0.998	168	0%	81	42%	12	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_wnt,HMMSmart_SM00097
ASZ1	136991	genome.wustl.edu	37	7	117007450	117007450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130768.2	-1	validated	p.D411N	1.000	98	0%	77	46.8%	0	-	benign(0.103)	tolerated(0.07)	neutral(0.327)	NULL
ASZ1	136991	genome.wustl.edu	37	7	117008576	117008576	+	RNA	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_023315.1	-1	validated	NULL	0.018	58	0%	34	50%	0	-	-	-	-	-
ASZ1	136991	genome.wustl.edu	37	7	117021076	117021076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130768.2	-1	validated	p.E312*	1.000	180	0%	41	53.7%	0	-	-	-	-	superfamily_SAM_homology,HMMPfam_SAM_2
CFTR	1080	genome.wustl.edu	37	7	117232586	117232586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000492.3	+1	reviewed	p.A789S	0.000	86	0%	46	41.3%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
CTTNBP2	83992	genome.wustl.edu	37	7	117432674	117432674	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033427.2	-1	reviewed	p.L192	0.158	606	0%	198	44.4%	2	0%	-	-	-	HMMPfam_CortBP2
KCND2	3751	genome.wustl.edu	37	7	119914938	119914938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012281.2	+1	reviewed	p.F84L	0.989	27	0%	34	44.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCND2	3751	genome.wustl.edu	37	7	119915338	119915338	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012281.2	+1	reviewed	p.E218*	1.000	78	0%	68	44.1%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
KCND2	3751	genome.wustl.edu	37	7	120385963	120385963	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012281.2	+1	reviewed	p.R533*	0.236	128	0%	16	43.8%	0	-	-	-	-	NULL
TSPAN12	23554	genome.wustl.edu	37	7	120446662	120446662	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012338.3	-1	reviewed	p.E185*	1.000	88	0%	50	40%	6	16.6%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
ING3	54556	genome.wustl.edu	37	7	120609222	120609222	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019071.2	+1	reviewed	p.S291*	1.000	122	0%	36	44.4%	4	0%	-	-	-	NULL
C7orf58	79974	genome.wustl.edu	37	7	120629922	120629922	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024913.4	+1	validated	p.K83*	0.937	118	0%	43	30.2%	2	0%	-	-	-	NULL
C7orf58	79974	genome.wustl.edu	37	7	120780957	120780957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024913.4	+1	validated	p.K592N	0.998	112	0%	18	61.1%	0	-	benign(0.018)	tolerated(0.37)	neutral(0.019)	NULL
FAM3C	10447	genome.wustl.edu	37	7	121018994	121018994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040020.1	-1	reviewed	p.K30Q	1.000	58	0%	28	46.4%	35	45.7%	possibly_damaging(0.849)	tolerated(0.38)	neutral(0.344)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121608078	121608078	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002851.2	+1	reviewed	p.I66M	1.000	118	0%	57	45.6%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRZ1	5803	genome.wustl.edu	37	7	121623864	121623864	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002851.2	+1	reviewed	p.I255	1.000	163	0%	146	44.5%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRZ1	5803	genome.wustl.edu	37	7	121624030	121624030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002851.2	+1	reviewed	p.F263V	1.000	243	0%	283	45.2%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRZ1	5803	genome.wustl.edu	37	7	121651425	121651425	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002851.2	+1	reviewed	p.L775	1.000	313	0%	55	40%	0	-	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652624	121652624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002851.2	+1	reviewed	p.S1175Y	0.999	301	0%	153	45.8%	0	-	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121681022	121681022	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002851.2	+1	reviewed	p.V1930	0.510	30	0.000	4	1.000	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
AASS	10157	genome.wustl.edu	37	7	121766507	121766507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005763.3	-1	reviewed	p.R132C	1.000	281	0%	80	32.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AlaDh_PNT_N,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
CADPS2	93664	genome.wustl.edu	37	7	122028792	122028792	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000397721	-1	known	p.Q606*	1.000	180	0%	31	45.2%	5	0%	-	-	-	NULL
CADPS2	93664	genome.wustl.edu	37	7	122303554	122303554	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017954.10	-1	reviewed	p.E175*	1.000	217	0%	51	45.1%	1	0%	-	-	-	NULL
RNF133	168433	genome.wustl.edu	37	7	122338487	122338487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139175.1	-1	reviewed	p.E162D	1.000	114	0%	50	42%	1	100%	possibly_damaging(0.868)	tolerated(0.12)	deleterious(0.598)	HMMPfam_PA,superfamily_SSF52025
RNF148	378925	genome.wustl.edu	37	7	122342489	122342489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198085.1	-1	validated	p.E106K	1.000	209	0%	30	33.3%	0	-	benign(0.031)	tolerated(0.41)	neutral(0.017)	HMMPfam_PA,superfamily_SSF52025
SLC13A1	6561	genome.wustl.edu	37	7	122787340	122787340	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022444.3	-1	validated	p.R229*	1.000	539	0%	38	50%	0	-	-	-	-	HMMPfam_Na_sulph_symp
IQUB	154865	genome.wustl.edu	37	7	123092880	123092880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178827.4	-1	validated	p.D765Y	0.001	308	0%	118	43.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
IQUB	154865	genome.wustl.edu	37	7	123152263	123152263	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178827.4	-1	validated	p.E44	0.000	292	0%	69	53.6%	0	-	-	-	-	NULL
LMOD2	442721	genome.wustl.edu	37	7	123302466	123302466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207163.1	+1	validated	p.E276K	1.000	131	0%	29	48.3%	0	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_Tropomodulin,superfamily_RNI-like
HYAL4	23553	genome.wustl.edu	37	7	123508904	123508904	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012269.2	+1	reviewed	p.E193*	0.513	67	0%	77	40.3%	0	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
GRM8	2918	genome.wustl.edu	37	7	126746558	126746558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000845.2	-1	reviewed	p.R240M	1.000	189	0%	22	45.5%	0	-	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM8	2918	genome.wustl.edu	37	7	126882759	126882759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000845.2	-1	reviewed	p.R167I	1.000	73	0%	31	32.3%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_Periplasmic binding protein-like I
ZNF800	168850	genome.wustl.edu	37	7	127014678	127014678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000265827	-1	known	p.E238*	1.000	351	0%	131	42.7%	7	42.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
GCC1	79571	genome.wustl.edu	37	7	127222946	127222946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024523.5	-1	reviewed	p.E484K	1.000	117	0%	98	14.3%	23	13%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LEP	3952	genome.wustl.edu	37	7	127894784	127894784	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000230.2	+1	reviewed	p.L158	0.384	24	0%	19	47.4%	0	-	-	-	-	HMMPfam_Leptin,superfamily_4-helical cytokines
METTL2B	55798	genome.wustl.edu	37	7	128119443	128119443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018396.2	+1	reviewed	p.S145L	0.054	297	0%	312	17.3%	49	24.4%	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
OPN1SW	611	genome.wustl.edu	37	7	128415539	128415539	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001708.2	-1	reviewed	p.F102	0.983	93	0%	72	47.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OPN1SW	611	genome.wustl.edu	37	7	128415570	128415570	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001708.2	-1	reviewed	p.F92Y	0.996	91	0%	77	44.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OPN1SW	611	genome.wustl.edu	37	7	128415720	128415720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001708.2	-1	reviewed	p.G42D	0.992	70	0%	52	44.2%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	superfamily_Family A G protein-coupled receptor-like
CCDC136	64753	genome.wustl.edu	37	7	128441514	128441514	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000494552	+1	known	p.A84V	0.248	34	0%	60	35%	0	-	-	-	-	NULL
TNPO3	23534	genome.wustl.edu	37	7	128655106	128655106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012470.2	-1	validated	p.R160Q	1.000	231	0%	83	54.2%	20	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xpo1,superfamily_ARM repeat
CPA2	1358	genome.wustl.edu	37	7	129909595	129909595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001869.2	+1	reviewed	p.F80L	0.949	218	0%	126	42.1%	0	-	benign(0.078)	tolerated(0.17)	neutral(0.065)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
CPA2	1358	genome.wustl.edu	37	7	129921972	129921972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001869.2	+1	reviewed	p.S339Y	0.000	118	0%	75	58.7%	0	-	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPA4	51200	genome.wustl.edu	37	7	129945686	129945686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016352.3	+1	reviewed	p.A173T	0.998	70	0%	18	50%	3	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
CPA5	93979	genome.wustl.edu	37	7	129987617	129987617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127441.1	+1	validated	p.L43I	1.000	127	0%	58	67.2%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
CPA5	93979	genome.wustl.edu	37	7	129989897	129989897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127441.1	+1	validated	p.A94T	0.374	96	1%	63	33.3%	0	-	probably_damaging(0.979)	tolerated(0.24)	neutral(0.459)	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
CPA5	93979	genome.wustl.edu	37	7	130007750	130007750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127441.1	+1	validated	p.D348N	0.000	104	0%	53	41.5%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
MKLN1	4289	genome.wustl.edu	37	7	131128390	131128390	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013255.4	+1	validated	p.R442*	1.000	325	0%	90	55.6%	5	20%	-	-	-	superfamily_Galactose oxidase central domain
MKLN1	4289	genome.wustl.edu	37	7	131130592	131130592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013255.4	+1	validated	p.F485L	1.000	540	0%	296	47%	5	20%	benign(0.054)	tolerated(0.25)	neutral(0.041)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
MKLN1	4289	genome.wustl.edu	37	7	131155701	131155701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013255.4	+1	validated	p.E677*	1.000	118	0%	187	36.9%	8	75%	-	-	-	NULL
PLXNA4	91584	genome.wustl.edu	37	7	131895883	131895883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020911.1	-1	validated	p.R706Q	0.951	35	0%	13	46.2%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
PLXNA4	91584	genome.wustl.edu	37	7	132192395	132192395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020911.1	-1	validated	p.S353L	1.000	50	0%	37	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
LRGUK	136332	genome.wustl.edu	37	7	133859356	133859356	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144648.1	+1	provisional	p.R330*	0.993	142	0%	88	39.8%	0	-	-	-	-	superfamily_SSF52058
LRGUK	136332	genome.wustl.edu	37	7	133943070	133943070	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144648.1	+1	provisional	p.E754*	0.232	213	0%	97	52.6%	0	-	-	-	-	NULL
AKR1B15	441282	genome.wustl.edu	37	7	134262485	134262485	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080538.2	+1	validated	p.E285	0.973	190	0%	116	45.7%	0	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
CALD1	800	genome.wustl.edu	37	7	134635130	134635130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033138.3	+1	reviewed	p.E600D	1.000	100	0%	67	43.3%	94	36.1%	unknown(0)	tolerated(0.17)	-	HMMPfam_Caldesmon
AGBL3	340351	genome.wustl.edu	37	7	134719137	134719137	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178563.3	+1	provisional	p.Y265*	0.999	141	0%	48	39.6%	0	-	-	-	-	NULL
C7orf49	78996	genome.wustl.edu	37	7	134852528	134852528	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024033.2	-1	validated	p.N57H	1.000	178	0%	112	43.8%	56	48.2%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
NUP205	23165	genome.wustl.edu	37	7	135312785	135312785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015135.2	+1	validated	p.L1620I	1.000	250	0%	75	42.7%	43	44.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SLC13A4	26266	genome.wustl.edu	37	7	135368877	135368877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012450.2	-1	validated	p.D580Y	1.000	108	0%	24	41.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_sulph_symp
CHRM2	1129	genome.wustl.edu	37	7	136700589	136700589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000739.2	+1	reviewed	p.R326K	1.000	116	0%	18	44.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DGKI	9162	genome.wustl.edu	37	7	137148349	137148349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004717.2	-1	reviewed	p.D882G	1.000	142	0%	37	54.1%	0	-	benign(0.256)	tolerated(0.43)	neutral(0.040)	NULL
DGKI	9162	genome.wustl.edu	37	7	137263038	137263038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004717.2	-1	reviewed	p.R559Q	1.000	56	0%	60	56.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DAGK_acc,HMMSmart_DAGKa
DGKI	9162	genome.wustl.edu	37	7	137269969	137269969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004717.2	-1	reviewed	p.D517Y	1.000	147	0%	98	43.9%	0	-	possibly_damaging(0.631)	deleterious(0)	deleterious(0.665)	NULL
DGKI	9162	genome.wustl.edu	37	7	137271876	137271876	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004717.2	-1	reviewed	p.G464	0.993	88	0%	44	45.5%	0	-	-	-	-	HMMPfam_DAGK_cat,HMMSmart_DAGKc
DGKI	9162	genome.wustl.edu	37	7	137330279	137330279	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004717.2	-1	reviewed	p.F248Y	1.000	132	0%	40	50%	0	-	possibly_damaging(0.446)	tolerated(1)	neutral(0.146)	NULL
CREB3L2	64764	genome.wustl.edu	37	7	137590553	137590553	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194071.2	-1	validated	p.E270	1.000	246	0%	98	42.9%	5	20%	-	-	-	superfamily_A DNA-binding domain in eukaryotic transcription factors
TRIM24	8805	genome.wustl.edu	37	7	138262238	138262238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015905.2	+1	reviewed	p.R721*	1.000	105	0%	63	65.1%	23	13%	-	-	-	NULL
SVOPL	136306	genome.wustl.edu	37	7	138281258	138281258	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001139456.1	-1	validated	p.S457	0.531	149	0%	50	58%	0	-	-	-	-	superfamily_MFS general substrate transporter
ZC3HAV1	56829	genome.wustl.edu	37	7	138764908	138764908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020119.3	-1	reviewed	p.F260C	0.012	35	0%	20	60%	11	27.2%	possibly_damaging(0.699)	deleterious(0.01)	deleterious(0.657)	NULL
TTC26	79989	genome.wustl.edu	37	7	138863041	138863041	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024926.2	+1	validated	p.S384*	1.000	118	0%	192	39.6%	8	0%	-	-	-	superfamily_SSF48452
LUC7L2	51631	genome.wustl.edu	37	7	139090513	139090513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016019.2	+1	validated	p.A164T	1.000	188	0%	182	42.3%	85	36.4%	benign(0.01)	tolerated(0.24)	neutral(0.038)	HMMPfam_LUC7
LUC7L2	51631	genome.wustl.edu	37	7	139094332	139094332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016019.2	+1	validated	p.E237D	1.000	132	0%	113	49.6%	114	42.1%	unknown(0)	tolerated(0.06)	-	HMMPfam_LUC7
LUC7L2	51631	genome.wustl.edu	37	7	139106919	139106919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016019.2	+1	validated	p.E338*	1.000	114	0%	85	41.2%	111	41.4%	-	-	-	NULL
HIPK2	28996	genome.wustl.edu	37	7	139311466	139311466	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022740.4	-1	validated	p.S151L	1.000	413	0.2%	146	40.4%	13	38.4%	-	-	-	NULL
HIPK2	28996	genome.wustl.edu	37	7	139316027	139316027	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022740.4	-1	validated	p.F61L	1.000	169	0%	102	39.2%	6	33.3%	-	-	-	NULL
JHDM1D	80853	genome.wustl.edu	37	7	139829361	139829361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030647.1	-1	validated	p.K164T	1.000	181	0%	137	43.1%	5	40%	possibly_damaging(0.683)	deleterious(0.04)	deleterious(0.593)	superfamily_Clavaminate synthase-like
BRAF	673	genome.wustl.edu	37	7	140482879	140482879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004333.4	-1	reviewed	p.S419Y	1.000	127	0%	92	43.5%	9	44.4%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
AGK	55750	genome.wustl.edu	37	7	141255292	141255292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018238.3	+1	validated	p.R9Q	1.000	100	0%	68	51.5%	8	37.5%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
KIAA1147	57189	genome.wustl.edu	37	7	141362477	141362477	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080392.1	-1	provisional	p.I449	0.997	70	0%	30	53.3%	8	12.5%	-	-	-	HMMPfam_DUF2347
WEE2	494551	genome.wustl.edu	37	7	141418917	141418917	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105558.1	+1	validated	p.E211*	1.000	183	0%	121	45.5%	0	-	-	-	-	superfamily_Kinase_like
TAS2R4	50832	genome.wustl.edu	37	7	141478600	141478600	+	Silent	SNP	C	C	T	rs183276675	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016944.1	+1	reviewed	p.I104	0.950	411	0%	196	52%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
MGAM	8972	genome.wustl.edu	37	7	141719073	141719073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004668.2	+1	reviewed	p.K134N	0.988	113	0%	26	53.8%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
MGAM	8972	genome.wustl.edu	37	7	141754657	141754657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004668.2	+1	reviewed	p.K1088T	0.053	85	0%	53	32.1%	0	-	benign(0.004)	tolerated(0.32)	neutral(0.024)	NULL
MGAM	8972	genome.wustl.edu	37	7	141758071	141758071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004668.2	+1	reviewed	p.Q1254H	0.995	290	0.3%	86	40.7%	0	-	benign(0.01)	tolerated(0.11)	neutral(0.272)	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141759293	141759293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004668.2	+1	reviewed	p.D1281N	1.000	109	0%	24	54.2%	0	-	probably_damaging(0.977)	tolerated(0.08)	deleterious(0.719)	HMMPfam_Glyco_hydro_31
TRBV4-1	28617	genome.wustl.edu	37	7	142013358	142013358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390357	+1	known	p.E71D	0.000	161	0%	106	39.6%	1	0%	benign(0.255)	tolerated(0.32)	neutral(0.051)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV5-1	28614	genome.wustl.edu	37	7	142021215	142021215	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390381	+1	known	p.L65	0.000	97	0%	78	46.2%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBV5-6	28609	genome.wustl.edu	37	7	142131847	142131847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390375	-1	known	p.L11I	0.000	153	0%	49	42.9%	0	-	possibly_damaging(0.556)	tolerated(0.19)	neutral(0.239)	NULL
TRBV7-6	28592	genome.wustl.edu	37	7	142139540	142139540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390374	-1	known	p.Y29H	0.001	114	0%	99	38.4%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV6-6	28601	genome.wustl.edu	37	7	142162112	142162112	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390371	-1	known	p.R55*	0.493	261	0.4%	139	41.7%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV11-1	28582	genome.wustl.edu	37	7	142223873	142223873	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390367	-1	known	p.I98	0.000	179	0%	89	36%	1	100%	-	-	-	HMMPfam_V-set,superfamily_SSF48726
TRBV10-1	28585	genome.wustl.edu	37	7	142232005	142232005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390364	-1	known	p.F6L	0.005	174	0%	37	35.1%	0	-	benign(0.001)	tolerated(1)	-	NULL
TRBV7-3	28595	genome.wustl.edu	37	7	142247204	142247204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390361	-1	known	p.F84L	0.029	111	0%	58	43.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV24-1	28563	genome.wustl.edu	37	7	142364684	142364684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390397	+1	known	p.L107I	0.007	243	0%	33	60.6%	0	-	benign(0.066)	tolerated(0.18)	neutral(0.060)	HMMPfam_V-set,superfamily_SSF48726
TRBV25-1	28562	genome.wustl.edu	37	7	142379064	142379064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390398	+1	known	p.A111V	0.999	107	0%	25	68%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV27	28560	genome.wustl.edu	37	7	142423604	142423604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390399	+1	known	p.R87Q	0.001	130	0%	17	70.6%	2	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
EPHB6	2051	genome.wustl.edu	37	7	142563849	142563849	+	Missense_Mutation	SNP	C	C	T	rs184081355	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004445.3	+1	reviewed	p.R413C	0.000	23	0%	17	52.9%	3	33.3%	benign(0.022)	deleterious(0.04)	neutral(0.350)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TRPV6	55503	genome.wustl.edu	37	7	142571386	142571386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018646.2	-1	validated	p.E535K	0.994	141	0%	66	56.1%	11	36.3%	probably_damaging(0.985)	tolerated(0.21)	deleterious(0.476)	HMMPfam_Ion_trans
PIP	5304	genome.wustl.edu	37	7	142832305	142832305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002652.2	+1	validated	p.K38N	0.000	107	0%	49	42.9%	0	-	benign(0.274)	tolerated(0.32)	neutral(0.053)	HMMPfam_SVA
TAS2R40	259286	genome.wustl.edu	37	7	142919387	142919387	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176882.1	+1	provisional	p.I72M	0.018	236	0%	78	35.9%	0	-	possibly_damaging(0.918)	tolerated(0.22)	neutral(0.410)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
GSTK1	373156	genome.wustl.edu	37	7	142961259	142961259	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143679.1	+1	reviewed	p.S51	0.328	100	0%	21	38.1%	149	48.3%	-	-	-	HMMPfam_DSBA,superfamily_Thiordxn-like_fd
CLCN1	1180	genome.wustl.edu	37	7	143039081	143039081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000083.2	+1	reviewed	p.E548K	1.000	177	0%	50	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
EPHA1	2041	genome.wustl.edu	37	7	143095477	143095477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005232.4	-1	reviewed	p.W467C	1.000	55	0%	32	34.4%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TAS2R41	259287	genome.wustl.edu	37	7	143175437	143175437	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176883.2	+1	provisional	p.E158*	0.000	60	0%	57	43.9%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
CTAGE6P	340307	genome.wustl.edu	37	7	143453526	143453526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178561.4	-1	validated	p.R409Q	0.002	409	0%	453	39.7%	0	-	-	-	-	NULL
CTAGE6P	340307	genome.wustl.edu	37	7	143453804	143453804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178561.4	-1	validated	p.K316N	0.183	319	0%	343	20.1%	3	0%	-	-	-	NULL
OR2A25	392138	genome.wustl.edu	37	7	143772122	143772122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004488.1	+1	provisional	p.K270N	0.992	209	0%	140	45.7%	0	-	benign(0.028)	tolerated(0.24)	neutral(0.039)	HMMPfam_7tm_1,superfamily_SSF81321
OR2A2	442361	genome.wustl.edu	37	7	143806912	143806912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005480.2	+1	validated	p.K79N	0.222	356	0%	115	42.6%	0	-	benign(0.012)	deleterious(0.05)	neutral(0.346)	HMMPfam_7tm_1,superfamily_SSF81321
LOC728377	728377	genome.wustl.edu	37	7	143983191	143983191	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_078379.1	-1	model	NULL	0.001	2425	0%	631	12.8%	22	0%	-	-	-	-
NOBOX	135935	genome.wustl.edu	37	7	144098969	144098969	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080413.2	-1	provisional	p.L95	0.000	51	0%	107	57%	0	-	-	-	-	NULL
CNTNAP2	26047	genome.wustl.edu	37	7	146997332	146997332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014141.5	+1	reviewed	p.R483Q	0.998	195	0%	31	45.2%	0	-	probably_damaging(1)	tolerated(0.63)	deleterious(0.503)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP2	26047	genome.wustl.edu	37	7	147600793	147600793	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014141.5	+1	reviewed	p.C745	0.217	89	0%	34	44.1%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
LOC643438	643438	genome.wustl.edu	37	7	148334479	148334479	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_015310.2	+1	model	NULL	1.000	248	0%	43	37.2%	0	-	-	-	-	-
CUL1	8454	genome.wustl.edu	37	7	148454241	148454241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003592.2	+1	validated	p.S161L	1.000	121	0%	141	48.9%	29	41.3%	benign(0.05)	tolerated(0.05)	neutral(0.348)	HMMPfam_Cullin,superfamily_Cullin repeat
PDIA4	9601	genome.wustl.edu	37	7	148718165	148718165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004911.4	-1	validated	p.D55N	1.000	235	0%	278	39.9%	303	41.5%	benign(0.081)	tolerated(0.08)	neutral(0.306)	NULL
ZNF786	136051	genome.wustl.edu	37	7	148769119	148769119	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152411.3	-1	validated	p.F249L	0.984	11	0%	22	45.5%	14	71.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100288645	100288645	genome.wustl.edu	37	7	149152610	149152610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342805.1	+1	model	p.R156I	0.991	20	0%	46	50%	22	31.8%	-	-	-	NULL
SSPO	23145	genome.wustl.edu	37	7	149475925	149475925	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000378016	+1	known	p.V297	0.016	13	0%	50	50%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
ZNF862	643641	genome.wustl.edu	37	7	149544977	149544977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099220.1	+1	provisional	p.K132T	0.001	51	0%	57	61.4%	10	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ATP6V0E2	155066	genome.wustl.edu	37	7	149575806	149575806	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145230.2	+1	validated	p.F113	0.975	6	0.000	16	0.438	106	52.8%	-	-	-	HMMPfam_ATP_synt_H
RARRES2	5919	genome.wustl.edu	37	7	150036171	150036171	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002889.3	-1	reviewed	e3-1	1.000	63	1.6%	30	23.3%	0	-	-	-	-	-
GIMAP7	168537	genome.wustl.edu	37	7	150217565	150217565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153236.3	+1	reviewed	p.S168N	0.804	90	0%	39	46.2%	4	0%	benign(0.001)	tolerated(1)	-	HMMPfam_AIG1,superfamily_SSF52540
GIMAP7	168537	genome.wustl.edu	37	7	150217807	150217807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153236.3	+1	reviewed	p.E249*	0.000	64	1.6%	51	41.2%	1	0%	-	-	-	NULL
GIMAP4	55303	genome.wustl.edu	37	7	150269349	150269349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018326.2	+1	reviewed	p.S64Y	0.068	282	0%	73	45.2%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AIG1,superfamily_SSF52540
GIMAP6	474344	genome.wustl.edu	37	7	150324683	150324683	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_024115.1	-1	reviewed	NULL	0.000	9	0.000	10	0.400	0	-	-	-	-	-
ATG9B	285973	genome.wustl.edu	37	7	150710498	150710498	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173681.5	-1	validated	e11-2	0.000	20	0%	12	33.3%	1	0%	-	-	-	-
ASIC3	9311	genome.wustl.edu	37	7	150747295	150747295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020321.2	+1	reviewed	p.M213L	1.000	46	0%	45	48.9%	0	-	probably_damaging(0.972)	tolerated(0.19)	neutral(0.463)	HMMPfam_ASC
SLC4A2	6522	genome.wustl.edu	37	7	150767965	150767965	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003040.3	+1	validated	p.I572	0.101	70	0%	49	38.8%	173	47.9%	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A2	6522	genome.wustl.edu	37	7	150768280	150768280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003040.3	+1	validated	p.R624H	0.998	20	0%	15	40%	157	52.2%	benign(0.155)	tolerated(0.13)	neutral(0.266)	superfamily_Phoshotransferase/anion transport protein
ASB10	136371	genome.wustl.edu	37	7	150878277	150878277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142459.1	-1	reviewed	p.A330T	0.998	5	0.000	8	0.625	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GALNTL5	168391	genome.wustl.edu	37	7	151664346	151664346	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145292.3	+1	validated	p.I5	0.000	77	0%	99	12.1%	0	-	-	-	-	NULL
GALNT11	63917	genome.wustl.edu	37	7	151791477	151791477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022087.2	+1	validated	p.F55L	1.000	157	0%	94	42.6%	16	50%	benign(0.356)	tolerated(1)	neutral(0.113)	NULL
GALNT11	63917	genome.wustl.edu	37	7	151814458	151814458	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000452146	+1	known	p.K278T	0.990	42	0%	98	33.7%	30	33.3%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MLL3	58508	genome.wustl.edu	37	7	151848638	151848638	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000360104	-1	known	p.W1746R	0.000	109	0%	79	34.2%	10	50%	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151877083	151877083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170606.2	-1	reviewed	p.E2426D	0.001	146	0%	52	51.9%	3	100%	benign(0.076)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151879016	151879016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170606.2	-1	reviewed	p.Q1977K	0.386	173	0%	76	44.7%	6	33.3%	benign(0.427)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151917797	151917797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170606.2	-1	reviewed	p.D1175N	1.000	131	0%	165	46.1%	1	0%	probably_damaging(1)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151945463	151945463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170606.2	-1	reviewed	p.K686Q	0.000	203	0%	97	40.2%	1	0%	benign(0.005)	-	-	NULL
XRCC2	7516	genome.wustl.edu	37	7	152345999	152345999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005431.1	-1	reviewed	p.L191I	0.990	101	0%	101	42.6%	5	80%	benign(0.053)	tolerated(0.63)	neutral(0.007)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DPP6	1804	genome.wustl.edu	37	7	154172024	154172024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000377770	+1	known	p.A120V	1.000	99	1%	48	33.3%	1	0%	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
DPP6	1804	genome.wustl.edu	37	7	154561163	154561163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000377770	+1	known	p.S307Y	1.000	129	0%	70	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP6	1804	genome.wustl.edu	37	7	154681005	154681005	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000377770	+1	known	p.V776	0.983	55	0%	73	37%	1	0%	-	-	-	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
HTR5A	3361	genome.wustl.edu	37	7	154862739	154862739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024012.2	+1	reviewed	p.L44I	0.971	58	0%	56	41.1%	0	-	benign(0.229)	tolerated(0.26)	neutral(0.057)	superfamily_Family A G protein-coupled receptor-like
ENSG00000220575	0	genome.wustl.edu	37	7	154862861	154862861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000395731	-1	known	p.E51D	1.000	44	0%	28	50%	0	-	unknown(0)	-	-	NULL
EN2	2020	genome.wustl.edu	37	7	155255078	155255078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001427.3	+1	reviewed	p.R233Q	1.000	11	0%	26	53.8%	86	43%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CNPY1	285888	genome.wustl.edu	37	7	155301642	155301642	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103176.1	-1	validated	p.E31*	0.999	36	0%	94	37.2%	0	-	-	-	-	NULL
SHH	6469	genome.wustl.edu	37	7	155599185	155599185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000193.2	-1	reviewed	p.R123W	1.000	9	0.000	36	0.583	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HH_signal,superfamily_Hedgehog_sig_N
UBE3C	9690	genome.wustl.edu	37	7	156975019	156975019	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014671.2	+1	validated	p.L330	0.498	117	0%	118	41.5%	31	48.3%	-	-	-	NULL
PTPRN2	5799	genome.wustl.edu	37	7	157691389	157691389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002847.3	-1	reviewed	p.K588N	0.002	131	0%	127	48%	0	-	possibly_damaging(0.891)	tolerated(0.05)	deleterious(0.696)	NULL
ENSG00000186921	0	genome.wustl.edu	37	7	158415278	158415278	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000335132	-1	known	p.E132*	0.030	148	0%	216	52.3%	2	0%	-	-	-	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158472673	158472673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017760.5	-1	validated	p.Q375H	1.000	131	0%	106	43.4%	5	20%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	superfamily_ARM repeat
WDR60	55112	genome.wustl.edu	37	7	158727197	158727197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018051.4	+1	validated	p.V912A	0.988	209	0%	186	49.5%	13	53.8%	possibly_damaging(0.695)	deleterious(0.04)	deleterious(0.598)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
VIPR2	7434	genome.wustl.edu	37	7	158829582	158829582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003382.4	-1	validated	p.K203N	1.000	43	0%	34	41.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2,superfamily_SSF81321
ZNF596	169270	genome.wustl.edu	37	8	195793	195793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042415.1	+1	validated	p.F316V	0.876	79	0%	73	49.3%	5	20%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
C8orf42	157695	genome.wustl.edu	37	8	442705	442705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175075.3	-1	validated	p.K84N	1.000	199	0%	273	52.7%	11	27.2%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1626785	1626785	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004745.3	+1	reviewed	p.L818	0.945	16	0%	26	46.2%	0	-	-	-	-	HMMPfam_GKAP
CSMD1	64478	genome.wustl.edu	37	8	3226828	3226828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033225.5	-1	validated	p.F950L	1.000	214	0%	48	45.8%	0	-	probably_damaging(0.998)	tolerated(0.72)	deleterious(0.476)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MCPH1	79648	genome.wustl.edu	37	8	6338338	6338338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024596.3	+1	reviewed	p.R693C	0.998	228	0%	97	44.3%	27	51.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
XKR5	389610	genome.wustl.edu	37	8	6682864	6682864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207411.4	-1	validated	p.D84N	1.000	21	0%	32	50%	0	-	-	-	-	HMMPfam_XK-related
ZNF705G	100131980	genome.wustl.edu	37	8	7215909	7215909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000400156	-1	known	p.Q164H	0.014	289	0%	376	29.8%	0	-	benign(0.018)	deleterious(0.04)	neutral(0.349)	superfamily_SSF57667
DEFB4A	1673	genome.wustl.edu	37	8	7752280	7752280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004942.2	+1	reviewed	p.M16V	0.000	665	0%	415	22.4%	0	-	unknown(0)	deleterious(0.05)	-	NULL
SGK223	157285	genome.wustl.edu	37	8	8185952	8185952	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080826.1	-1	validated	p.S780	0.086	21	0%	13	38.5%	21	33.3%	-	-	-	NULL
MFHAS1	9258	genome.wustl.edu	37	8	8749742	8749742	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004225.2	-1	reviewed	p.K276T	1.000	19	0%	16	56.2%	18	38.8%	possibly_damaging(0.793)	tolerated(0.18)	neutral(0.354)	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
TNKS	8658	genome.wustl.edu	37	8	9537498	9537498	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003747.2	+1	validated	e4+1	1.000	136	0%	74	40.5%	0	-	-	-	-	-
TNKS	8658	genome.wustl.edu	37	8	9619099	9619099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003747.2	+1	validated	p.R1076H	1.000	89	0%	151	44.4%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
RP1L1	94137	genome.wustl.edu	37	8	10466515	10466515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178857.5	-1	validated	p.G1698E	0.042	87	0%	58	43.1%	3	33.3%	unknown(0)	tolerated(0.11)	-	NULL
MTMR9	66036	genome.wustl.edu	37	8	11167068	11167068	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015458.3	+1	reviewed	p.L281R	0.999	86	0%	37	40.5%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52799
FAM167A	83648	genome.wustl.edu	37	8	11282042	11282042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053279.2	-1	validated	p.R162M	1.000	75	0%	74	50%	7	14.2%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
GATA4	2626	genome.wustl.edu	37	8	11606535	11606535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002052.3	+1	reviewed	p.G242S	1.000	112	0%	42	38.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GATA,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NEIL2	252969	genome.wustl.edu	37	8	11637401	11637401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135746.1	+1	validated	p.D145N	0.997	38	0%	42	42.9%	18	33.3%	benign(0.034)	deleterious(0.01)	neutral(0.408)	NULL
DLC1	10395	genome.wustl.edu	37	8	12947836	12947836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182643.2	-1	reviewed	p.F1333L	0.929	109	0%	58	46.6%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
DLC1	10395	genome.wustl.edu	37	8	13356943	13356943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182643.2	-1	reviewed	p.T213N	0.148	195	0%	104	44.2%	0	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	NULL
C8orf48	157773	genome.wustl.edu	37	8	13425332	13425332	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007090.2	+1	validated	p.R278	0.003	82	0%	56	42.9%	7	28.5%	-	-	-	NULL
SGCZ	137868	genome.wustl.edu	37	8	13948042	13948042	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139167.2	-1	reviewed	p.L283	0.996	276	0%	15	40%	0	-	-	-	-	HMMPfam_Sarcoglycan_1
SGCZ	137868	genome.wustl.edu	37	8	14412379	14412379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139167.2	-1	reviewed	p.E32D	0.999	261	0%	89	42.7%	0	-	benign(0.313)	tolerated(0.2)	neutral(0.147)	NULL
CNOT7	29883	genome.wustl.edu	37	8	17088265	17088265	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013354.5	-1	reviewed	p.G274	1.000	155	0%	47	31.9%	126	46%	-	-	-	NULL
MTMR7	9108	genome.wustl.edu	37	8	17218703	17218703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004686.4	-1	reviewed	p.D131N	0.369	517	0%	138	49.3%	0	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	superfamily_(Phosphotyrosine protein) phosphatases II
SLC7A2	6542	genome.wustl.edu	37	8	17409358	17409358	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003046.5	+1	validated	p.V346	0.981	298	0%	195	48.2%	0	-	-	-	-	HMMPfam_AA_permease
FGL1	2267	genome.wustl.edu	37	8	17731884	17731884	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004467.3	-1	reviewed	p.E131*	0.845	194	0%	152	40.8%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
PCM1	5108	genome.wustl.edu	37	8	17815061	17815061	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006197.3	+1	validated	p.N606T	1.000	200	0%	97	10.3%	19	21%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	PatternScan_MOLYBDOPTERIN_EUK
PCM1	5108	genome.wustl.edu	37	8	17863813	17863813	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006197.3	+1	validated	p.S1623	1.000	138	0%	89	57.3%	56	30.3%	-	-	-	NULL
NAT2	10	genome.wustl.edu	37	8	18257539	18257539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000015.2	+1	reviewed	p.R9I	1.000	143	0%	69	34.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54001
PSD3	23362	genome.wustl.edu	37	8	18725356	18725356	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015310.3	-1	validated	p.E488*	1.000	362	0%	100	45%	2	0%	-	-	-	NULL
PSD3	23362	genome.wustl.edu	37	8	18729800	18729800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015310.3	-1	validated	p.K192Q	0.409	149	0%	76	39.5%	4	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19363042	19363042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130518.1	-1	validated	p.D102N	0.669	78	0%	35	37.1%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_CHGN
CSGALNACT1	55790	genome.wustl.edu	37	8	19363277	19363277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130518.1	-1	validated	p.C23*	1.000	153	0%	52	44.2%	0	-	-	-	-	NULL
LPL	4023	genome.wustl.edu	37	8	19809286	19809286	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000311322	+1	known	p.G86*	1.000	427	0%	152	45.4%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
SLC18A1	6570	genome.wustl.edu	37	8	20030612	20030612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135691.2	-1	validated	p.T220S	0.999	161	0%	36	61.1%	0	-	probably_damaging(0.987)	tolerated(0.35)	neutral(0.457)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ATP6V1B2	526	genome.wustl.edu	37	8	20069655	20069655	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001693.3	+1	reviewed	p.E250*	1.000	209	0%	72	45.8%	19	15.7%	-	-	-	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
GFRA2	2675	genome.wustl.edu	37	8	21551978	21551978	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001495.4	-1	reviewed	p.E424*	1.000	95	1.1%	80	46.3%	0	-	-	-	-	NULL
XPO7	23039	genome.wustl.edu	37	8	21856723	21856723	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100161.1	+1	validated	p.F859	0.998	348	0%	108	43.5%	52	42.3%	-	-	-	superfamily_ARM repeat
EPB49	2039	genome.wustl.edu	37	8	21927802	21927802	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114135.2	+1	validated	p.I187	0.216	79	0%	70	44.3%	120	55%	-	-	-	NULL
PPP3CC	5533	genome.wustl.edu	37	8	22368662	22368662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005605.3	+1	provisional	p.L183R	1.000	384	0%	236	44.9%	19	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
LOXL2	4017	genome.wustl.edu	37	8	23185969	23185969	+	Missense_Mutation	SNP	G	G	A	rs4602894	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002318.2	-1	reviewed	p.S359L	0.998	66	0%	22	63.6%	45	44.4%	possibly_damaging(0.686)	deleterious(0.02)	deleterious(0.628)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SR,superfamily_Srcr_receptor
ENTPD4	9583	genome.wustl.edu	37	8	23301973	23301973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004901.3	-1	validated	p.E187K	0.998	169	0.6%	54	46.3%	33	45.4%	benign(0.208)	tolerated(0.26)	neutral(0.054)	HMMPfam_GDA1_CD39
NKX3-1	4824	genome.wustl.edu	37	8	23539056	23539056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006167.3	-1	validated	p.R128Q	0.966	122	0%	105	50.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ADAM28	10863	genome.wustl.edu	37	8	24167708	24167708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014265.4	+1	reviewed	p.Y87S	0.995	155	0%	36	33.3%	1	100%	possibly_damaging(0.649)	deleterious(0.02)	deleterious(0.611)	HMMPfam_Pep_M12B_propep
ADAM28	10863	genome.wustl.edu	37	8	24168879	24168879	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014265.4	+1	reviewed	p.D104E	1.000	236	0%	60	40%	4	50%	benign(0.071)	deleterious(0)	neutral(0.450)	HMMPfam_Pep_M12B_propep
ADAMDEC1	27299	genome.wustl.edu	37	8	24254940	24254940	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014479.3	+1	validated	p.R200*	0.419	99	0%	45	48.9%	1	0%	-	-	-	NULL
ADAM7	8756	genome.wustl.edu	37	8	24350671	24350671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380789	+1	known	p.T591A	0.997	88	0%	47	46.8%	0	-	benign(0.023)	tolerated(0.26)	neutral(0.035)	HMMPfam_ADAM_CR,HMMSmart_SM00608
NEFL	4747	genome.wustl.edu	37	8	24811753	24811753	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000221169	-1	known	p.E371*	1.000	506	0%	377	39.8%	0	-	-	-	-	HMMPfam_Filament
DOCK5	80005	genome.wustl.edu	37	8	25198396	25198396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024940.6	+1	validated	p.F777L	1.000	480	0%	257	45.1%	0	-	benign(0.001)	tolerated(1)	-	NULL
GNRH1	2796	genome.wustl.edu	37	8	25279142	25279142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000825.3	-1	reviewed	p.E62K	0.963	175	0.6%	38	31.6%	2	50%	possibly_damaging(0.794)	tolerated(0.14)	deleterious(0.547)	NULL
KCTD9	54793	genome.wustl.edu	37	8	25290916	25290916	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017634.2	-1	validated	p.S283	1.000	58	0%	42	11.9%	16	6.2%	-	-	-	HMMPfam_Pentapeptide
KCTD9	54793	genome.wustl.edu	37	8	25293979	25293979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017634.2	-1	validated	p.F174L	1.000	115	0%	111	48.6%	14	28.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
CDCA2	157313	genome.wustl.edu	37	8	25318047	25318047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152562.2	+1	validated	p.E70G	1.000	157	0%	177	12.4%	12	0%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
EBF2	64641	genome.wustl.edu	37	8	25745360	25745360	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022659.2	-1	validated	p.E294*	1.000	148	0%	40	50%	0	-	-	-	-	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
EBF2	64641	genome.wustl.edu	37	8	25766068	25766068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022659.2	-1	validated	p.F185L	1.000	138	0%	89	46.1%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
PPP2R2A	5520	genome.wustl.edu	37	8	26218536	26218536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002717.3	+1	reviewed	p.R169Q	1.000	128	0%	105	49.5%	24	37.5%	unknown(0)	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_PP2A_B_subs_rcg
ADRA1A	148	genome.wustl.edu	37	8	26614137	26614137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380581	-1	known	p.S348Y	0.001	79	0%	32	50%	0	-	unknown(0)	deleterious(0.01)	-	NULL
EPHX2	2053	genome.wustl.edu	37	8	27362572	27362572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001979.4	+1	reviewed	p.F149S	0.997	298	0%	66	36.4%	1	0%	benign(0.221)	tolerated(0.31)	neutral(0.049)	HMMPfam_Hydrolase,superfamily_SSF56784
EPHX2	2053	genome.wustl.edu	37	8	27373267	27373267	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001979.4	+1	reviewed	p.G256	0.513	198	0%	62	46.8%	0	-	-	-	-	superfamily_SSF53474
SCARA3	51435	genome.wustl.edu	37	8	27514336	27514336	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016240.2	+1	reviewed	p.S88	0.997	327	0%	166	43.4%	2	0%	-	-	-	NULL
SCARA3	51435	genome.wustl.edu	37	8	27516184	27516184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016240.2	+1	reviewed	p.Q166P	0.253	118	0%	54	50%	0	-	possibly_damaging(0.475)	tolerated(0.08)	neutral(0.457)	NULL
SCARA3	51435	genome.wustl.edu	37	8	27516700	27516700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016240.2	+1	reviewed	p.R338H	1.000	91	0%	21	47.6%	2	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
C8orf80	389643	genome.wustl.edu	37	8	27880890	27880890	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010906.1	-1	provisional	p.E779*	0.064	273	0%	33	48.5%	0	-	-	-	-	NULL
C8orf80	389643	genome.wustl.edu	37	8	27913520	27913520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010906.1	-1	provisional	p.K390Q	0.903	251	0%	266	42.5%	0	-	probably_damaging(0.981)	tolerated(0.06)	deleterious(0.748)	NULL
PNOC	5368	genome.wustl.edu	37	8	28186724	28186724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006228.3	+1	validated	p.V17A	0.999	364	0%	52	40.4%	0	-	unknown(0)	tolerated(1)	-	HMMPfam_Opiods_neuropep
FBXO16	157574	genome.wustl.edu	37	8	28304736	28304736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172366.2	-1	reviewed	p.K265N	1.000	293	0%	426	43.9%	8	62.5%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	NULL
HMBOX1	79618	genome.wustl.edu	37	8	28906493	28906493	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135726.1	+1	validated	p.H351	1.000	170	0%	30	60%	5	60%	-	-	-	superfamily_Homeodomain-like
UBXN8	7993	genome.wustl.edu	37	8	30612249	30612249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000265616	+1	known	p.R117H	0.998	59	0%	149	47%	9	22.2%	-	-	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30694396	30694396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031271.3	-1	validated	p.S2752Y	0.000	178	0%	86	50%	0	-	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	NULL
TEX15	56154	genome.wustl.edu	37	8	30705908	30705908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031271.3	-1	validated	p.I209N	0.000	44	0%	76	40.8%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
WRN	7486	genome.wustl.edu	37	8	30945421	30945421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000553.4	+1	reviewed	p.E521*	0.428	92	0%	39	53.8%	5	40%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
WRN	7486	genome.wustl.edu	37	8	30989948	30989948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000553.4	+1	reviewed	p.K965E	0.726	161	0%	117	39.3%	14	7.1%	benign(0.006)	deleterious(0.04)	neutral(0.349)	HMMPfam_RQC,superfamily_P-loop containing nucleoside triphosphate hydrolases
FUT10	84750	genome.wustl.edu	37	8	33230119	33230119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032664.3	-1	validated	p.F472L	0.999	129	0%	56	51.8%	6	16.6%	benign(0.336)	deleterious(0.01)	deleterious(0.512)	NULL
UNC5D	137970	genome.wustl.edu	37	8	35631834	35631834	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080872.2	+1	validated	p.I832	1.000	178	0%	76	11.8%	0	-	-	-	-	NULL
UNC5D	137970	genome.wustl.edu	37	8	35647892	35647892	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080872.2	+1	validated	p.F891	1.000	137	0%	37	62.2%	0	-	-	-	-	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
KCNU1	157855	genome.wustl.edu	37	8	36644890	36644890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031836.2	+1	validated	p.R88C	0.270	178	0%	38	47.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF81324
KCNU1	157855	genome.wustl.edu	37	8	36691169	36691169	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031836.2	+1	validated	p.R402*	0.063	375	0%	85	17.6%	0	-	-	-	-	superfamily_NAD(P)-bd
KCNU1	157855	genome.wustl.edu	37	8	36776375	36776375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031836.2	+1	validated	p.E852D	0.000	182	0%	117	44.4%	0	-	benign(0.137)	tolerated(0.37)	neutral(0.030)	NULL
KCNU1	157855	genome.wustl.edu	37	8	36780134	36780134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031836.2	+1	validated	p.S908Y	1.000	274	0%	122	37.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PROSC	11212	genome.wustl.edu	37	8	37635577	37635577	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007198.3	+1	validated	p.C261	0.000	115	0%	82	47.6%	50	48%	-	-	-	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37730550	37730550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002814.2	-1	validated	p.E590D	0.320	78	0%	52	53.8%	4	50%	probably_damaging(0.974)	tolerated(0.35)	neutral(0.436)	NULL
GOT1L1	137362	genome.wustl.edu	37	8	37791821	37791821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152413.2	-1	validated	p.I419T	0.984	145	0%	207	44.4%	0	-	possibly_damaging(0.602)	-	-	NULL
DDHD2	23259	genome.wustl.edu	37	8	38099779	38099779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015214.2	+1	validated	p.R242C	1.000	131	0%	125	38.4%	35	45.7%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38187256	38187256	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023034.1	-1	reviewed	p.K407N	1.000	120	0%	90	47.8%	39	53.8%	possibly_damaging(0.455)	deleterious(0.05)	deleterious(0.494)	superfamily_Tudor/PWWP/MBT
WHSC1L1	54904	genome.wustl.edu	37	8	38194927	38194927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023034.1	-1	reviewed	p.Q269R	1.000	92	0%	135	37%	40	40%	benign(0.282)	tolerated(0.22)	neutral(0.129)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
LETM2	137994	genome.wustl.edu	37	8	38250180	38250180	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144652.1	+1	provisional	p.Y9*	0.000	26	0%	50	46%	2	0%	-	-	-	NULL
ADAM9	8754	genome.wustl.edu	37	8	38880697	38880697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003816.2	+1	reviewed	p.R256Q	1.000	348	0.3%	143	46.9%	35	45.7%	possibly_damaging(0.551)	deleterious(0.04)	deleterious(0.536)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM32	203102	genome.wustl.edu	37	8	39114857	39114857	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145004.5	+1	validated	p.S719	0.360	295	0%	39	38.5%	0	-	-	-	-	NULL
ADAM18	8749	genome.wustl.edu	37	8	39463871	39463871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014237.1	+1	reviewed	p.L60I	1.000	260	0%	80	45%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pep_M12B_propep
ADAM18	8749	genome.wustl.edu	37	8	39505931	39505931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014237.1	+1	reviewed	p.F372C	0.000	109	0%	39	23.1%	0	-	possibly_damaging(0.44)	tolerated(0.18)	neutral(0.199)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM2	2515	genome.wustl.edu	37	8	39604080	39604080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001464.3	-1	reviewed	p.F695L	0.917	139	0%	140	32.1%	0	-	probably_damaging(0.99)	tolerated(0.18)	deleterious(0.497)	NULL
ADAM2	2515	genome.wustl.edu	37	8	39624472	39624472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001464.3	-1	reviewed	p.N468H	0.000	192	0%	91	46.2%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
ADAM2	2515	genome.wustl.edu	37	8	39645709	39645709	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001464.3	-1	reviewed	p.N235T	1.000	159	0%	57	43.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
IDO2	169355	genome.wustl.edu	37	8	39840263	39840263	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194294.2	+1	validated	p.T149	0.633	154	0%	104	40.4%	0	-	-	-	-	HMMPfam_IDO
IDO2	169355	genome.wustl.edu	37	8	39862892	39862892	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194294.2	+1	validated	p.L251	1.000	381	0%	270	48.1%	0	-	-	-	-	HMMPfam_IDO
IDO2	169355	genome.wustl.edu	37	8	39873026	39873026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194294.2	+1	validated	p.L390V	0.455	245	0%	54	63%	1	0%	probably_damaging(0.966)	tolerated(0.11)	deleterious(0.679)	HMMPfam_IDO
ZMAT4	79698	genome.wustl.edu	37	8	40683152	40683152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024645.2	-1	validated	p.Y15C	1.000	234	0%	24	33.3%	1	0%	unknown(0)	deleterious(0)	-	HMMSmart_SM00451,HMMPfam_zf-U1,HMMSmart_SM00355
SFRP1	6422	genome.wustl.edu	37	8	41166142	41166142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003012.4	-1	reviewed	p.K179N	1.000	28	0%	34	44.1%	15	0%	benign(0.033)	tolerated(0.34)	neutral(0.025)	NULL
NKX6-3	157848	genome.wustl.edu	37	8	41504727	41504727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152568.2	-1	provisional	p.L50I	0.000	11	0%	27	37%	0	-	unknown(0)	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41800349	41800349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099412.1	-1	validated	p.E800K	1.000	387	0%	153	44.4%	8	62.5%	unknown(0)	tolerated(0.26)	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41806865	41806865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099412.1	-1	validated	p.L539F	1.000	75	0%	42	42.9%	4	75%	unknown(0)	deleterious(0.04)	-	superfamily_Acyl_CoA_acyltransferase
KAT6A	7994	genome.wustl.edu	37	8	41832267	41832267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099412.1	-1	validated	p.E479D	1.000	335	0%	144	48.6%	9	11.1%	unknown(0)	tolerated(0.06)	-	NULL
IKBKB	3551	genome.wustl.edu	37	8	42162712	42162712	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001556.1	+1	validated	p.A132	0.028	170	0%	134	47%	26	46.1%	unknown(0)	tolerated(0.08)	-	superfamily_Kinase_like,HMMPfam_Pkinase
CHRNA6	8973	genome.wustl.edu	37	8	42608330	42608330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004198.2	-1	provisional	p.K493Q	0.111	120	0%	138	55.1%	0	-	benign(0.147)	tolerated(0.34)	neutral(0.036)	NULL
HOOK3	84376	genome.wustl.edu	37	8	42868475	42868475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032410.3	+1	validated	p.E650*	1.000	58	0%	162	24.1%	13	7.6%	-	-	-	HMMPfam_HOOK
POTEA	340441	genome.wustl.edu	37	8	43173656	43173656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005365.2	+1	validated	p.T360A	0.000	831	0%	360	37.2%	0	-	-	-	-	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47884821	47884821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000399732	-1	known	p.W455L	1.000	22	0%	43	16.3%	0	-	-	-	-	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47884834	47884834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000399732	-1	known	p.D451Y	1.000	22	0%	48	33.3%	0	-	-	-	-	NULL
LOC100287980	100287980	genome.wustl.edu	37	8	48033839	48033839	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342844.1	-1	model	p.E88A	0.006	265	0%	110	50%	0	-	-	-	-	NULL
ENSG00000215177	0	genome.wustl.edu	37	8	48114310	48114310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000399730	-1	known	p.V37I	0.061	143	0%	80	36.2%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
PRKDC	5591	genome.wustl.edu	37	8	48691358	48691358	+	Missense_Mutation	SNP	C	C	T	rs67260773		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314191	-1	known	p.G3860D	0.021	47	0%	85	52.9%	23	39.1%	benign(0.01)	tolerated(0.32)	neutral(0.025)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PRKDC	5591	genome.wustl.edu	37	8	48697820	48697820	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314191	-1	known	p.M3653R	1.000	108	0%	219	49.8%	18	50%	benign(0.093)	tolerated(0.26)	neutral(0.041)	superfamily_Protein kinase-like (PK-like)
PRKDC	5591	genome.wustl.edu	37	8	48697866	48697866	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314191	-1	known	p.E3638*	1.000	71	0%	173	50.9%	14	21.4%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48749969	48749969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314191	-1	known	p.R2521Q	1.000	71	0%	105	51.4%	5	60%	possibly_damaging(0.943)	tolerated(0.47)	neutral(0.399)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48815227	48815227	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314191	-1	known	p.K1057N	0.987	452	0%	305	44.9%	3	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48842416	48842416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314191	-1	known	p.F683L	1.000	30	0%	98	36.7%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_ARM repeat
EFCAB1	79645	genome.wustl.edu	37	8	49637313	49637313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024593.3	-1	validated	p.F208L	0.962	71	0%	141	41.8%	2	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52287167	52287167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144651.4	-1	validated	p.D1228Y	1.000	88	0%	50	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
ST18	9705	genome.wustl.edu	37	8	53049213	53049213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014682.2	-1	validated	p.S746Y	1.000	59	0%	36	41.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2HC,superfamily_SSF103637
ST18	9705	genome.wustl.edu	37	8	53055521	53055521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014682.2	-1	validated	p.H713N	1.000	255	0%	189	40.2%	0	-	probably_damaging(0.985)	tolerated(0.22)	deleterious(0.474)	HMMPfam_MYT1
ST18	9705	genome.wustl.edu	37	8	53071642	53071642	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014682.2	-1	validated	p.F541C	1.000	236	0%	124	50%	0	-	possibly_damaging(0.812)	tolerated(0.14)	deleterious(0.555)	HMMPfam_MYT1
ST18	9705	genome.wustl.edu	37	8	53085111	53085111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014682.2	-1	validated	p.L104I	0.053	21	0%	45	48.9%	0	-	possibly_damaging(0.455)	tolerated(0.27)	neutral(0.182)	NULL
RGS20	8601	genome.wustl.edu	37	8	54866760	54866760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170587.2	+1	validated	p.L290F	1.000	107	0%	78	50%	0	-	possibly_damaging(0.872)	tolerated(0.06)	deleterious(0.661)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
TCEA1	6917	genome.wustl.edu	37	8	54900682	54900682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006756.2	-1	validated	p.R153Q	1.000	159	0%	70	42.9%	107	47.6%	benign(0.004)	tolerated(0.54)	neutral(0.007)	HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510
RP1	6101	genome.wustl.edu	37	8	55534724	55534724	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006269.1	+1	reviewed	p.A221	0.994	94	0%	115	47%	0	-	-	-	-	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837
RP1	6101	genome.wustl.edu	37	8	55538573	55538573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006269.1	+1	reviewed	p.E711*	0.000	25	0%	30	40%	0	-	-	-	-	NULL
RP1	6101	genome.wustl.edu	37	8	55542260	55542260	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006269.1	+1	reviewed	p.E1940*	1.000	70	0%	65	44.6%	0	-	-	-	-	NULL
RP1	6101	genome.wustl.edu	37	8	55542508	55542508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006269.1	+1	reviewed	p.K2022N	0.001	82	0%	65	43.1%	0	-	benign(0.008)	tolerated(0.32)	neutral(0.024)	NULL
XKR4	114786	genome.wustl.edu	37	8	56270266	56270266	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052898.1	+1	provisional	p.R279*	1.000	355	0%	112	48.2%	0	-	-	-	-	HMMPfam_XK-related
XKR4	114786	genome.wustl.edu	37	8	56436549	56436549	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052898.1	+1	provisional	p.V572	1.000	142	0%	73	47.9%	0	-	-	-	-	NULL
TGS1	96764	genome.wustl.edu	37	8	56698314	56698314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024831.6	+1	validated	p.S68F	0.004	136	0%	74	41.9%	13	84.6%	possibly_damaging(0.685)	deleterious(0.02)	deleterious(0.627)	NULL
SDR16C6P	442388	genome.wustl.edu	37	8	57307894	57307894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000444271	-1	known	p.L11V	0.055	115	0%	67	41.8%	0	-	-	-	-	NULL
CYP7A1	1581	genome.wustl.edu	37	8	59409553	59409553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000780.3	-1	reviewed	p.S173Y	0.976	172	0%	99	42.4%	0	-	possibly_damaging(0.895)	deleterious(0.02)	deleterious(0.736)	HMMPfam_p450,superfamily_Cytochrome_P450
TOX	9760	genome.wustl.edu	37	8	59851988	59851988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014729.2	-1	reviewed	p.S95Y	1.000	173	0.6%	57	31.6%	5	40%	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
CHD7	55636	genome.wustl.edu	37	8	61728992	61728992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017780.2	+1	reviewed	p.D849Y	1.000	117	0%	97	38.1%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
MTFR1	9650	genome.wustl.edu	37	8	66617040	66617040	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014637.3	+1	reviewed	p.K131	0.311	60	0%	27	37%	28	53.5%	-	-	-	HMMPfam_DUF729
TRIM55	84675	genome.wustl.edu	37	8	67064611	67064611	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_184085.1	+1	reviewed	e8-1	0.999	64	0%	23	30.4%	0	-	-	-	-	-
VCPIP1	80124	genome.wustl.edu	37	8	67546968	67546968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025054.4	-1	validated	p.S1146Y	1.000	100	0%	69	46.4%	5	60%	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
C8orf45	157777	genome.wustl.edu	37	8	67809099	67809099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173518.4	+1	validated	p.L511I	0.985	80	0%	94	16%	0	-	benign(0.043)	tolerated(0.16)	neutral(0.062)	HMMSmart_SM00350
PPP1R42	286187	genome.wustl.edu	37	8	67925225	67925225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013626.2	-1	provisional	p.L135M	1.000	102	0%	153	36.6%	0	-	benign(0.19)	tolerated(0.16)	neutral(0.077)	superfamily_SSF52058
CSPP1	79848	genome.wustl.edu	37	8	68030536	68030536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077204.1	+1	validated	p.R547Q	1.000	412	0.2%	133	36.1%	5	20%	probably_damaging(0.957)	tolerated(0.39)	neutral(0.417)	NULL
CSPP1	79848	genome.wustl.edu	37	8	68070693	68070693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077204.1	+1	validated	p.K781N	1.000	60	1.7%	70	50%	8	25%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68111314	68111314	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006421.3	-1	reviewed	p.F1802C	1.000	248	0%	135	45.9%	15	33.3%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68137248	68137248	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006421.3	-1	reviewed	p.S1366	0.998	217	0%	57	45.6%	3	33.3%	-	-	-	superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68138302	68138302	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006421.3	-1	reviewed	p.R1345*	1.000	78	0%	23	21.7%	5	0%	-	-	-	superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68140363	68140363	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006421.3	-1	reviewed	p.D1142	1.000	167	0%	75	46.7%	7	28.5%	-	-	-	superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68178266	68178266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006421.3	-1	reviewed	p.E700*	1.000	299	0%	138	46.4%	1	100%	-	-	-	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold
ARFGEF1	10565	genome.wustl.edu	37	8	68179665	68179665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006421.3	-1	reviewed	p.E529*	1.000	55	0%	45	31.1%	3	66.6%	-	-	-	superfamily_ARM-type_fold
CPA6	57094	genome.wustl.edu	37	8	68334861	68334861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020361.4	-1	validated	p.E398K	1.000	280	0%	122	46.7%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPA6	57094	genome.wustl.edu	37	8	68396988	68396988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020361.4	-1	validated	p.K225E	1.000	159	0%	113	40.7%	0	-	benign(0.348)	tolerated(0.37)	neutral(0.129)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
PREX2	80243	genome.wustl.edu	37	8	68950493	68950493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024870.2	+1	validated	p.D269N	1.000	378	0%	42	45.2%	7	28.5%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PREX2	80243	genome.wustl.edu	37	8	68972981	68972981	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024870.2	+1	validated	p.Q436*	1.000	140	0%	57	56.1%	1	0%	-	-	-	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
PREX2	80243	genome.wustl.edu	37	8	69030872	69030872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024870.2	+1	validated	p.M1138I	1.000	137	0%	48	43.8%	5	80%	benign(0.112)	deleterious(0)	neutral(0.454)	NULL
SULF1	23213	genome.wustl.edu	37	8	70539450	70539450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128204.1	+1	validated	p.F619C	1.000	341	0%	535	47.3%	33	0%	probably_damaging(0.968)	tolerated(0.12)	deleterious(0.670)	superfamily_Alkaline_phosphatase_core
SLCO5A1	81796	genome.wustl.edu	37	8	70667829	70667829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030958.2	-1	reviewed	p.F363C	1.000	118	0%	95	46.3%	0	-	benign(0.084)	deleterious(0.01)	neutral(0.412)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
PRDM14	63978	genome.wustl.edu	37	8	70970919	70970919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024504.2	-1	validated	p.R448W	0.440	184	0%	100	44%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NCOA2	10499	genome.wustl.edu	37	8	71037031	71037031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006540.2	-1	validated	p.R1329Q	1.000	154	0%	79	50.6%	11	72.7%	probably_damaging(1)	tolerated(0.5)	deleterious(0.510)	HMMPfam_DUF1518
NCOA2	10499	genome.wustl.edu	37	8	71039182	71039182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006540.2	-1	validated	p.R1261Q	0.981	316	0%	127	48.8%	5	0%	probably_damaging(0.965)	tolerated(0.38)	neutral(0.424)	NULL
NCOA2	10499	genome.wustl.edu	37	8	71078986	71078986	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006540.2	-1	validated	p.N182T	1.000	118	0%	52	48.1%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF55785
EYA1	2138	genome.wustl.edu	37	8	72123486	72123486	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000503.4	-1	reviewed	p.E535*	1.000	490	0%	152	40.1%	0	-	-	-	-	HMMPfam_Hydrolase
EYA1	2138	genome.wustl.edu	37	8	72211314	72211314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000503.4	-1	reviewed	p.I265T	1.000	720	0%	101	48.5%	0	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72950298	72950298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007332.2	-1	reviewed	p.L769I	0.031	49	0%	23	43.5%	0	-	benign(0.103)	tolerated(0.44)	neutral(0.021)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72959433	72959433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007332.2	-1	reviewed	p.D639Y	1.000	98	0%	31	54.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
TRPA1	8989	genome.wustl.edu	37	8	72970026	72970026	+	Missense_Mutation	SNP	G	G	A	rs193112574	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007332.2	-1	reviewed	p.S340F	0.002	201	0%	60	53.3%	0	-	benign(0.209)	tolerated(0.51)	neutral(0.029)	HMMPfam_Ank,superfamily_Ankyrin repeat
LOC392232	392232	genome.wustl.edu	37	8	73122106	73122106	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_037363.2	-1	model	NULL	0.998	47	0%	15	60%	0	-	-	-	-	-
KCNB2	9312	genome.wustl.edu	37	8	73849972	73849972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004770.2	+1	reviewed	p.F794L	0.654	79	0%	31	35.5%	0	-	benign(0.021)	tolerated(0.12)	neutral(0.262)	NULL
RDH10	157506	genome.wustl.edu	37	8	74234918	74234918	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172037.3	+1	validated	p.E259*	1.000	36	0%	33	48.5%	7	14.2%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
JPH1	56704	genome.wustl.edu	37	8	75227557	75227557	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020647.2	-1	reviewed	p.S226	0.851	14	0%	29	34.5%	0	-	-	-	-	NULL
HNF4G	3174	genome.wustl.edu	37	8	76463718	76463718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004133.4	+1	validated	p.R150W	0.995	103	0%	17	58.8%	0	-	possibly_damaging(0.52)	tolerated(0.13)	neutral(0.427)	superfamily_Str_ncl_receptor
ZFHX4	79776	genome.wustl.edu	37	8	77764165	77764165	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024721.4	+1	validated	p.L1625V	0.982	310	0%	65	50.8%	0	-	benign(0.076)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77764571	77764571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024721.4	+1	validated	p.A1760D	1.000	233	0%	81	48.1%	0	-	possibly_damaging(0.485)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77765105	77765105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024721.4	+1	validated	p.R1938H	1.000	90	0%	53	41.5%	0	-	possibly_damaging(0.646)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77766935	77766935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024721.4	+1	validated	p.K2548T	1.000	63	0%	39	48.7%	0	-	possibly_damaging(0.873)	-	-	superfamily_Homeodomain-like
ZFHX4	79776	genome.wustl.edu	37	8	77767473	77767473	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024721.4	+1	validated	p.S2727	1.000	79	0%	62	11.3%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77767647	77767647	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024721.4	+1	validated	p.S2785	0.000	93	1.1%	61	42.6%	0	-	-	-	-	NULL
PEX2	5828	genome.wustl.edu	37	8	77896042	77896042	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000318.2	-1	reviewed	p.R125*	1.000	182	0%	99	46.5%	43	39.5%	-	-	-	HMMPfam_Pex2_Pex12
ZC2HC1A	51101	genome.wustl.edu	37	8	79598768	79598768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016010.2	+1	validated	p.A93T	1.000	89	0%	48	43.8%	13	46.1%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
PAG1	55824	genome.wustl.edu	37	8	81897258	81897258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018440.3	-1	reviewed	p.S210L	0.000	241	0%	145	42.8%	3	0%	benign(0)	tolerated(1)	-	NULL
FABP5	2171	genome.wustl.edu	37	8	82196802	82196802	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001444.1	+1	reviewed	p.*136Y	0.993	235	0%	212	50.5%	116	18.1%	-	-	-	NULL
FABP9	646480	genome.wustl.edu	37	8	82371476	82371476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080526.1	-1	provisional	p.S57Y	0.032	202	0%	79	45.6%	0	-	benign(0.133)	deleterious(0)	neutral(0.456)	HMMPfam_Lipocalin,superfamily_Calycin
LRRCC1	85444	genome.wustl.edu	37	8	86027725	86027725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033402.4	+1	validated	p.S279F	0.998	105	0%	32	37.5%	6	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86041455	86041455	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033402.4	+1	validated	p.L489	0.011	34	0%	72	44.4%	16	43.7%	-	-	-	NULL
WWP1	11059	genome.wustl.edu	37	8	87437508	87437508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007013.3	+1	validated	p.R373Q	1.000	103	1%	105	41%	19	47.3%	possibly_damaging(0.883)	deleterious(0.03)	deleterious(0.710)	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
WWP1	11059	genome.wustl.edu	37	8	87443710	87443710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007013.3	+1	validated	p.R488I	1.000	137	0%	99	53.5%	19	52.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00456,superfamily_WW domain
CNGB3	54714	genome.wustl.edu	37	8	87588350	87588350	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019098.4	-1	reviewed	p.E704D	0.007	175	0%	182	46.2%	0	-	possibly_damaging(0.837)	tolerated(0.52)	neutral(0.328)	NULL
CNGB3	54714	genome.wustl.edu	37	8	87738812	87738812	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019098.4	-1	reviewed	p.T95	0.000	324	0%	111	40.5%	0	-	-	-	-	NULL
CNBD1	168975	genome.wustl.edu	37	8	87917400	87917400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173538.2	+1	provisional	p.L84I	0.081	129	0%	77	49.4%	0	-	benign(0.01)	tolerated(0.85)	neutral(0.001)	NULL
DCAF4L2	138009	genome.wustl.edu	37	8	88886060	88886060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152418.3	-1	validated	p.R47H	0.003	132	0%	69	55.1%	0	-	benign(0.002)	tolerated(1)	-	superfamily_WD40_like
RIPK2	8767	genome.wustl.edu	37	8	90784008	90784008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003821.5	+1	reviewed	p.Q227H	1.000	146	0%	74	31.1%	29	44.8%	benign(0.011)	tolerated(0.28)	neutral(0.032)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NBN	4683	genome.wustl.edu	37	8	90960060	90960060	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002485.4	-1	reviewed	p.E636*	0.992	176	0%	133	36.1%	13	0%	-	-	-	NULL
NBN	4683	genome.wustl.edu	37	8	90967568	90967568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002485.4	-1	reviewed	p.S447Y	0.977	208	0%	83	47%	13	84.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
OTUD6B	51633	genome.wustl.edu	37	8	92083385	92083385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016023.3	+1	validated	p.K64N	0.974	107	0%	73	37%	9	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RBM12B	389677	genome.wustl.edu	37	8	94747425	94747425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203390.2	-1	validated	p.R405I	1.000	76	0%	112	34.8%	11	45.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM12B	389677	genome.wustl.edu	37	8	94748137	94748137	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203390.2	-1	validated	p.E168*	1.000	153	0%	185	16.2%	10	0%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM12B	389677	genome.wustl.edu	37	8	94748255	94748255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203390.2	-1	validated	p.Q128H	0.127	114	0%	172	43.6%	15	40%	possibly_damaging(0.502)	tolerated(0.13)	neutral(0.420)	superfamily_RNA-binding domain RBD
TMEM67	91147	genome.wustl.edu	37	8	94811923	94811923	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153704.5	+1	reviewed	p.P726	0.281	312	0%	149	15.4%	10	0%	-	-	-	HMMPfam_Meckelin
TMEM67	91147	genome.wustl.edu	37	8	94822105	94822105	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153704.5	+1	reviewed	p.I918	1.000	27	0%	84	39.3%	8	0%	-	-	-	HMMPfam_Meckelin
CDH17	1015	genome.wustl.edu	37	8	95189941	95189941	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144663.1	-1	reviewed	p.A53	0.052	227	0%	64	43.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
RAD54B	25788	genome.wustl.edu	37	8	95392586	95392586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012415.2	-1	reviewed	p.E678D	0.997	226	0%	187	44.4%	13	38.4%	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMSmart_HELICc,superfamily_SSF52540
DPY19L4	286148	genome.wustl.edu	37	8	95777431	95777431	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181787.2	+1	validated	p.I297	1.000	96	1%	208	41.3%	4	25%	-	-	-	HMMPfam_DUF2211
DPY19L4	286148	genome.wustl.edu	37	8	95789974	95789974	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181787.2	+1	validated	p.F512S	1.000	150	0%	172	45.9%	15	53.3%	possibly_damaging(0.655)	deleterious(0.02)	deleterious(0.614)	HMMPfam_DUF2211
INTS8	55656	genome.wustl.edu	37	8	95848825	95848825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017864.2	+1	provisional	p.E276G	1.000	235	0%	128	54.7%	17	52.9%	benign(0.235)	tolerated(0.28)	neutral(0.055)	NULL
CCNE2	9134	genome.wustl.edu	37	8	95894371	95894371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_057749.1	-1	reviewed	p.L364V	0.606	99	0%	258	46.1%	22	36.3%	benign(0.075)	deleterious(0.01)	neutral(0.411)	HMMPfam_Cyclin_C
TP53INP1	94241	genome.wustl.edu	37	8	95953101	95953101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033285.3	-1	validated	p.F23L	0.789	190	0.5%	240	45.8%	9	22.2%	benign(0.038)	tolerated(0.19)	neutral(0.052)	NULL
UQCRB	7381	genome.wustl.edu	37	8	97244037	97244037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006294.3	-1	reviewed	p.I75L	1.000	220	0%	103	40.8%	1101	42.5%	possibly_damaging(0.513)	tolerated(0.28)	neutral(0.204)	HMMPfam_UCR_14kD,superfamily_14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
MTERFD1	51001	genome.wustl.edu	37	8	97256275	97256275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015942.3	-1	provisional	p.E311K	1.000	299	0.3%	228	41.7%	42	40.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_mTERF
SDC2	6383	genome.wustl.edu	37	8	97620598	97620598	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002998.3	+1	reviewed	p.L114	0.000	249	0%	81	53.1%	19	57.8%	-	-	-	HMMPfam_Syndecan
CPQ	10404	genome.wustl.edu	37	8	98155282	98155282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016134.2	+1	provisional	p.F430L	1.000	395	0%	74	41.9%	16	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53187
ENSG00000104324	0	genome.wustl.edu	37	8	98155571	98155571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000325141	+1	known	p.F525L	0.378	48	0%	22	40.9%	10	50%	-	-	-	NULL
TSPYL5	85453	genome.wustl.edu	37	8	98289206	98289206	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033512.2	-1	validated	p.R289S	0.157	130	0%	103	10.7%	1	0%	probably_damaging(0.992)	tolerated(0.19)	deleterious(0.497)	HMMPfam_NAP
TSPYL5	85453	genome.wustl.edu	37	8	98289518	98289518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033512.2	-1	validated	p.K185N	0.001	124	0%	53	41.5%	0	-	possibly_damaging(0.839)	tolerated(0.06)	deleterious(0.643)	NULL
TSPYL5	85453	genome.wustl.edu	37	8	98289718	98289718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033512.2	-1	validated	p.D119Y	0.864	18	0%	13	46.2%	1	0%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
MTDH	92140	genome.wustl.edu	37	8	98701320	98701320	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178812.3	+1	validated	p.S267Y	0.982	25	0%	77	44.2%	32	12.5%	possibly_damaging(0.923)	tolerated(0.07)	deleterious(0.692)	NULL
C8orf47	203111	genome.wustl.edu	37	8	99102091	99102091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173549.2	+1	validated	p.M282I	0.000	126	0%	72	45.8%	26	46.1%	possibly_damaging(0.741)	tolerated(0.2)	neutral(0.321)	NULL
C8orf47	203111	genome.wustl.edu	37	8	99105523	99105523	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173549.2	+1	validated	p.E363*	1.000	197	0%	109	48.6%	38	47.3%	-	-	-	NULL
POP1	10940	genome.wustl.edu	37	8	99152405	99152405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015029.2	+1	reviewed	p.E488K	0.678	213	0%	87	46%	5	20%	benign(0.309)	tolerated(0.12)	neutral(0.357)	NULL
POP1	10940	genome.wustl.edu	37	8	99153079	99153079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015029.2	+1	reviewed	p.K519N	1.000	137	0%	95	46.3%	4	25%	benign(0.231)	deleterious(0.03)	neutral(0.388)	NULL
POP1	10940	genome.wustl.edu	37	8	99170169	99170169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015029.2	+1	reviewed	p.K915N	0.249	158	0%	30	46.7%	12	58.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KCNS2	3788	genome.wustl.edu	37	8	99440522	99440522	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020697.2	+1	provisional	p.I105	0.851	72	0%	46	54.3%	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
VPS13B	157680	genome.wustl.edu	37	8	100844757	100844757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017890.3	+1	reviewed	p.S3189Y	0.021	90	0%	22	54.5%	4	50%	possibly_damaging(0.819)	tolerated(0.06)	deleterious(0.632)	NULL
RGS22	26166	genome.wustl.edu	37	8	101018270	101018270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015668.3	-1	validated	p.K810R	1.000	262	0%	101	45.5%	2	0%	possibly_damaging(0.882)	tolerated(0.43)	neutral(0.358)	NULL
RGS22	26166	genome.wustl.edu	37	8	101076165	101076165	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015668.3	-1	validated	p.E277	0.010	63	0%	54	53.7%	0	-	-	-	-	NULL
SPAG1	6674	genome.wustl.edu	37	8	101203620	101203620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003114.3	+1	reviewed	p.L279F	1.000	118	0%	170	47.1%	2	0%	benign(0.248)	tolerated(0.23)	neutral(0.067)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SPAG1	6674	genome.wustl.edu	37	8	101206467	101206467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003114.3	+1	reviewed	p.R356I	0.000	45	0%	86	36%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
SNX31	169166	genome.wustl.edu	37	8	101629891	101629891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152628.3	-1	validated	p.R130I	0.000	219	0%	257	45.9%	0	-	benign(0.12)	tolerated(0.18)	neutral(0.066)	NULL
PABPC1	26986	genome.wustl.edu	37	8	101724661	101724661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002568.3	-1	validated	p.L301I	1.000	80	0%	115	49.6%	1465	44.6%	probably_damaging(0.97)	tolerated(0.11)	deleterious(0.684)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PABPC1	26986	genome.wustl.edu	37	8	101727717	101727717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002568.3	-1	validated	p.R206C	1.000	121	0.8%	147	36.7%	1534	45.8%	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
GRHL2	79977	genome.wustl.edu	37	8	102586030	102586030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024915.3	+1	reviewed	p.R290L	1.000	50	0%	29	34.5%	28	42.8%	probably_damaging(0.997)	tolerated(0.41)	deleterious(0.481)	HMMPfam_CP2
RRM2B	50484	genome.wustl.edu	37	8	103220470	103220470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015713.4	-1	reviewed	p.S316Y	1.000	36	0%	26	53.8%	13	15.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FZD6	8323	genome.wustl.edu	37	8	104337100	104337100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003506.3	+1	reviewed	p.D256N	0.987	269	0%	81	43.2%	25	56%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_Frizzled
FZD6	8323	genome.wustl.edu	37	8	104337581	104337581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003506.3	+1	reviewed	p.R416Q	1.000	165	0%	59	42.4%	31	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Frizzled
DCAF13	25879	genome.wustl.edu	37	8	104455090	104455090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015420.6	+1	validated	p.V592I	0.007	92	0%	75	41.3%	72	43%	benign(0.002)	tolerated(0.38)	neutral(0.018)	HMMPfam_Sof1
RIMS2	9699	genome.wustl.edu	37	8	104898050	104898050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100117.1	+1	validated	p.R408Q	1.000	106	0%	11	36.4%	0	-	possibly_damaging(0.619)	deleterious(0.01)	deleterious(0.621)	NULL
RIMS2	9699	genome.wustl.edu	37	8	104940089	104940089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100117.1	+1	validated	p.R739I	1.000	143	0%	62	58.1%	0	-	benign(0.046)	tolerated(0.27)	neutral(0.036)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TM7SF4	81501	genome.wustl.edu	37	8	105361101	105361101	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030788.2	+1	reviewed	p.I107	0.995	194	0%	75	41.3%	0	-	-	-	-	NULL
DPYS	1807	genome.wustl.edu	37	8	105405171	105405171	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001385.2	-1	reviewed	p.F428	0.997	145	0%	46	32.6%	0	-	-	-	-	superfamily_Metalo_hydrolase
ZFPM2	23414	genome.wustl.edu	37	8	106814760	106814760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012082.3	+1	reviewed	p.T817N	0.200	73	0%	28	32.1%	0	-	benign(0.026)	deleterious(0.03)	neutral(0.365)	NULL
ZFPM2	23414	genome.wustl.edu	37	8	106815730	106815730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012082.3	+1	reviewed	p.F1140L	1.000	50	0%	22	40.9%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OXR1	55074	genome.wustl.edu	37	8	107719101	107719101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018002.2	+1	validated	p.S451Y	0.001	79	0%	51	43.1%	17	29.4%	benign(0.15)	tolerated(0.15)	neutral(0.254)	NULL
RSPO2	340419	genome.wustl.edu	37	8	108973007	108973007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178565.4	-1	validated	p.D108Y	1.000	122	0%	55	49.1%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
RSPO2	340419	genome.wustl.edu	37	8	109001376	109001376	+	Missense_Mutation	SNP	C	C	T	rs182334537	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178565.4	-1	validated	p.R64Q	1.000	173	0%	37	43.2%	0	-	probably_damaging(0.987)	tolerated(0.15)	deleterious(0.677)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
PKHD1L1	93035	genome.wustl.edu	37	8	110412475	110412475	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177531.4	+1	validated	p.F395V	1.000	266	0%	99	44.4%	3	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00758,superfamily_Anthrax protective antigen
PKHD1L1	93035	genome.wustl.edu	37	8	110441617	110441617	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177531.4	+1	validated	p.R1017	0.028	189	0%	105	39%	2	100%	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110489519	110489519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177531.4	+1	validated	p.D2995Y	1.000	283	0%	56	41.1%	3	66.6%	benign(0.235)	deleterious(0.03)	neutral(0.388)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110527459	110527459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177531.4	+1	validated	p.L3872V	0.366	190	0%	62	40.3%	16	31.2%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110530557	110530557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_177531.4	+1	validated	p.D3951Y	1.000	171	0%	32	50%	12	41.6%	possibly_damaging(0.768)	deleterious(0.01)	deleterious(0.691)	NULL
SYBU	55638	genome.wustl.edu	37	8	110588071	110588071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099744.1	-1	validated	p.D352E	0.962	97	0%	46	43.5%	29	48.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
KCNV1	27012	genome.wustl.edu	37	8	110980568	110980568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014379.2	-1	reviewed	p.L418F	1.000	110	0%	71	39.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CSMD3	114788	genome.wustl.edu	37	8	113293510	113293510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.S3134Y	1.000	123	0%	35	37.1%	0	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113308098	113308098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.D2860N	1.000	117	0%	61	45.9%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113318389	113318389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.N2640H	1.000	203	0%	64	35.9%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113326766	113326766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.L2481I	1.000	234	0%	44	38.6%	0	-	probably_damaging(0.987)	tolerated(0.39)	neutral(0.453)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113331173	113331173	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.I2418N	1.000	109	0%	23	39.1%	0	-	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113349922	113349922	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.R2231*	1.000	88	0%	22	36.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113516021	113516021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.K1694R	1.000	307	0%	116	50%	0	-	probably_damaging(0.971)	tolerated(0.44)	neutral(0.425)	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113519057	113519057	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.A1586	0.999	135	0%	46	47.8%	0	-	-	-	-	superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113585880	113585880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.D1298Y	1.000	73	0%	28	35.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113657379	113657379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.S1090Y	1.000	113	0%	70	38.6%	0	-	possibly_damaging(0.928)	tolerated(0.42)	neutral(0.390)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113702220	113702220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.D678N	0.999	175	0%	51	47.1%	0	-	unknown(0)	tolerated(0.45)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113966976	113966976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.D453Y	1.000	63	0%	53	32.1%	0	-	unknown(0)	deleterious(0)	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	114111124	114111124	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198123.1	-1	validated	p.E260*	1.000	172	0%	30	40%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRPS1	7227	genome.wustl.edu	37	8	116599811	116599811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014112.2	-1	reviewed	p.K706T	1.000	106	0%	43	46.5%	9	44.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_ZnF_C2H2
UTP23	84294	genome.wustl.edu	37	8	117784025	117784025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032334.2	+1	validated	p.R232W	0.998	12	0%	41	51.2%	10	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
RAD21	5885	genome.wustl.edu	37	8	117861197	117861197	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006265.2	-1	reviewed	p.L564	0.997	262	0.4%	74	39.2%	222	50%	unknown(0)	-	-	NULL
RAD21	5885	genome.wustl.edu	37	8	117874113	117874113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006265.2	-1	reviewed	p.F114C	1.000	183	0%	30	53.3%	102	50.9%	possibly_damaging(0.852)	deleterious(0.01)	deleterious(0.733)	NULL
RAD21	5885	genome.wustl.edu	37	8	117875449	117875449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006265.2	-1	reviewed	p.R65Q	1.000	264	0%	62	40.3%	127	50.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rad21_Rec8_N
SLC30A8	169026	genome.wustl.edu	37	8	118175682	118175682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173851.2	+1	reviewed	p.D248N	1.000	229	0%	120	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cation_efflux
EXT1	2131	genome.wustl.edu	37	8	118834750	118834750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000127.2	-1	reviewed	p.Q457H	1.000	274	0%	94	38.3%	23	39.1%	benign(0.02)	tolerated(0.29)	neutral(0.030)	NULL
EXT1	2131	genome.wustl.edu	37	8	118842490	118842490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000127.2	-1	reviewed	p.K421N	1.000	176	0%	102	48%	20	40%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	NULL
TNFRSF11B	4982	genome.wustl.edu	37	8	119936803	119936803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002546.3	-1	reviewed	p.Q339R	0.996	310	0%	149	40.9%	4	0%	benign(0.411)	tolerated(0.07)	neutral(0.452)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
NOV	4856	genome.wustl.edu	37	8	120430323	120430323	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002514.3	+1	reviewed	p.F112	0.799	173	0%	77	48.1%	5	80%	-	-	-	HMMPfam_VWC,HMMSmart_VWC
NOV	4856	genome.wustl.edu	37	8	120435330	120435330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002514.3	+1	reviewed	p.F344L	1.000	69	0%	19	63.2%	12	50%	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_Cys_knot
ENPP2	5168	genome.wustl.edu	37	8	120584463	120584463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130863.1	-1	reviewed	p.R603I	1.000	246	0%	171	48.5%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
ENPP2	5168	genome.wustl.edu	37	8	120608142	120608142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006209.3	-1	reviewed	p.R358I	1.000	157	0%	90	46.7%	1	0%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
TAF2	6873	genome.wustl.edu	37	8	120801098	120801098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003184.3	-1	reviewed	p.R539G	1.000	284	0%	245	54.7%	10	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TAF2	6873	genome.wustl.edu	37	8	120810022	120810022	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003184.3	-1	reviewed	p.E286V	1.000	104	0%	78	15.4%	9	11.1%	possibly_damaging(0.78)	deleterious(0.01)	deleterious(0.697)	HMMPfam_Peptidase_M1,superfamily_SSF55486
MTBP	27085	genome.wustl.edu	37	8	121467809	121467809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022045.3	+1	provisional	p.H207N	0.755	166	0%	84	44%	1	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
MTBP	27085	genome.wustl.edu	37	8	121473460	121473460	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022045.3	+1	provisional	p.L314	0.856	278	0%	169	42%	5	60%	-	-	-	NULL
ATAD2	29028	genome.wustl.edu	37	8	124359527	124359527	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014109.3	-1	reviewed	p.N673H	0.974	154	0%	122	48.4%	8	75%	benign(0.003)	tolerated(0.13)	neutral(0.253)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATAD2	29028	genome.wustl.edu	37	8	124383523	124383523	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014109.3	-1	reviewed	p.R198*	0.995	156	0%	154	39%	9	33.3%	-	-	-	NULL
FBXO32	114907	genome.wustl.edu	37	8	124547051	124547051	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_058229.2	-1	reviewed	p.Y40*	1.000	174	0%	293	45.4%	0	-	-	-	-	NULL
KLHL38	340359	genome.wustl.edu	37	8	124664311	124664311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081675.2	-1	validated	p.L286I	1.000	299	0%	46	45.7%	0	-	probably_damaging(0.961)	tolerated(0.61)	neutral(0.408)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL38	340359	genome.wustl.edu	37	8	124664387	124664387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081675.2	-1	validated	p.F260L	0.993	206	0%	37	35.1%	0	-	benign(0.124)	tolerated(0.2)	neutral(0.059)	superfamily_Galactose oxidase central domain
FAM91A1	157769	genome.wustl.edu	37	8	124790929	124790929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144963.2	+1	validated	p.L156I	1.000	91	0%	49	44.9%	19	36.8%	possibly_damaging(0.778)	tolerated(0.11)	deleterious(0.562)	NULL
FER1L6	654463	genome.wustl.edu	37	8	125072807	125072807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039112.2	+1	validated	p.R1002W	0.991	322	0%	162	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
GSDMC	56169	genome.wustl.edu	37	8	130777902	130777902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031415.2	-1	validated	p.K181I	0.000	241	0%	72	37.5%	0	-	possibly_damaging(0.918)	deleterious(0.04)	deleterious(0.718)	HMMPfam_Gasdermin
FAM49B	51571	genome.wustl.edu	37	8	130874497	130874497	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016623.3	-1	predicted	p.F93L	0.996	104	0%	82	50%	69	52.1%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_DUF1394
ASAP1	50807	genome.wustl.edu	37	8	131073262	131073262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018482.2	-1	validated	p.E919K	0.995	86	0%	76	44.7%	13	30.7%	possibly_damaging(0.46)	tolerated(0.21)	neutral(0.195)	NULL
ENSG00000200304	0	genome.wustl.edu	37	8	131081888	131081888	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000363434	-1	novel	NULL	0.056	14	0%	25	40%	0	-	-	-	-	-
ADCY8	114	genome.wustl.edu	37	8	131861891	131861891	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001115.2	-1	reviewed	p.F790C	1.000	372	0%	67	44.8%	0	-	benign(0.005)	tolerated(0.14)	neutral(0.249)	NULL
ADCY8	114	genome.wustl.edu	37	8	131916183	131916183	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001115.2	-1	reviewed	p.I582	1.000	145	0%	36	58.3%	0	-	-	-	-	HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase
ADCY8	114	genome.wustl.edu	37	8	131964142	131964142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001115.2	-1	reviewed	p.I405F	1.000	223	0%	57	52.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
EFR3A	23167	genome.wustl.edu	37	8	132957062	132957062	+	Missense_Mutation	SNP	G	G	A	rs143933422	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015137.3	+1	validated	p.R53Q	1.000	340	0%	25	32%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
OC90	729330	genome.wustl.edu	37	8	133044289	133044289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080399.2	-1	validated	p.R290S	0.035	295	0.3%	33	39.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133141656	133141656	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004519.2	-1	reviewed	p.S824	0.188	77	0%	33	48.5%	0	-	-	-	-	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133829256	133829256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016018.4	+1	validated	p.P436Q	1.000	77	0%	15	46.7%	7	42.8%	possibly_damaging(0.648)	deleterious(0)	deleterious(0.672)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133837526	133837526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016018.4	+1	validated	p.D552Y	1.000	57	0%	23	43.5%	13	69.2%	possibly_damaging(0.896)	deleterious(0.03)	deleterious(0.718)	NULL
PHF20L1	51105	genome.wustl.edu	37	8	133848922	133848922	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016018.4	+1	validated	p.R683*	1.000	332	0%	60	51.7%	19	31.5%	-	-	-	superfamily_FYVE/PHD zinc finger,HMMPfam_PHD
TG	7038	genome.wustl.edu	37	8	133898757	133898757	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003235.4	+1	reviewed	p.S380	0.002	104	0%	37	54.1%	0	-	-	-	-	NULL
TG	7038	genome.wustl.edu	37	8	133900629	133900629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003235.4	+1	reviewed	p.E859D	0.004	77	0%	39	33.3%	0	-	benign(0.019)	tolerated(0.35)	neutral(0.022)	superfamily_Thyroglobulin type-1 domain
SLA	6503	genome.wustl.edu	37	8	134050962	134050962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006748.3	-1	validated	p.G253E	0.078	155	0%	82	36.6%	4	0%	benign(0.003)	tolerated(0.87)	neutral(0.001)	NULL
NDRG1	10397	genome.wustl.edu	37	8	134251254	134251254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135242.1	-1	reviewed	p.R351Q	1.000	21	0%	22	63.6%	227	54.6%	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	NULL
ZFAT	57623	genome.wustl.edu	37	8	135613804	135613804	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020863.3	-1	reviewed	p.N720H	0.451	104	0%	58	46.6%	2	50%	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	NULL
ZFAT	57623	genome.wustl.edu	37	8	135622870	135622870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020863.3	-1	reviewed	p.K159N	1.000	465	0%	249	39.4%	3	33.3%	possibly_damaging(0.566)	deleterious(0)	deleterious(0.638)	NULL
KHDRBS3	10656	genome.wustl.edu	37	8	136533485	136533485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006558.1	+1	provisional	p.E32K	1.000	205	0%	85	40%	44	29.5%	benign(0.038)	deleterious(0)	neutral(0.447)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139144875	139144875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015912.3	-1	validated	p.E1394D	1.000	154	0%	75	42.7%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
COL22A1	169044	genome.wustl.edu	37	8	139638480	139638480	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152888.1	-1	validated	p.E1224*	1.000	141	0%	46	39.1%	1	0%	-	-	-	NULL
COL22A1	169044	genome.wustl.edu	37	8	139833645	139833645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152888.1	-1	validated	p.R327W	1.000	251	0%	51	52.9%	0	-	unknown(0)	deleterious(0.03)	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
EIF2C2	27161	genome.wustl.edu	37	8	141545600	141545600	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012154.3	-1	reviewed	p.S739L	1.000	149	0%	71	49.3%	18	44.4%	-	-	-	NULL
DENND3	22898	genome.wustl.edu	37	8	142185299	142185299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014957.2	+1	validated	p.G679E	1.000	44	0%	56	14.3%	3	0%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
DENND3	22898	genome.wustl.edu	37	8	142185334	142185334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014957.2	+1	validated	p.D691Y	0.989	71	0%	80	40%	1	0%	possibly_damaging(0.921)	tolerated(0.17)	neutral(0.430)	NULL
FLJ43860	389690	genome.wustl.edu	37	8	142498672	142498672	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207414.2	-1	validated	p.C243*	0.975	52	0%	27	48.1%	0	-	-	-	-	NULL
BAI1	575	genome.wustl.edu	37	8	143570452	143570452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001702.2	+1	reviewed	p.S837G	1.000	11	0%	16	62.5%	0	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
GML	2765	genome.wustl.edu	37	8	143928029	143928029	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002066.2	+1	validated	p.E134*	0.000	116	0%	72	50%	0	-	-	-	-	NULL
CYP11B2	1585	genome.wustl.edu	37	8	143994773	143994773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000498.3	-1	reviewed	p.S350I	0.000	40	0%	10	50%	0	-	benign(0.019)	tolerated(0.19)	neutral(0.051)	HMMPfam_p450,superfamily_Cytochrome P450
CYP11B2	1585	genome.wustl.edu	37	8	143995789	143995789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000498.3	-1	reviewed	p.R282H	0.000	246	0%	102	46.1%	0	-	benign(0.003)	tolerated(0.37)	neutral(0.019)	HMMPfam_p450,superfamily_Cytochrome P450
ZFP41	286128	genome.wustl.edu	37	8	144332254	144332254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173832.3	+1	provisional	p.F81V	0.003	39	0%	72	56.9%	7	57.1%	possibly_damaging(0.707)	deleterious(0)	deleterious(0.700)	NULL
ZNF623	9831	genome.wustl.edu	37	8	144733279	144733279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014789.3	+1	validated	p.L413I	0.563	268	0%	108	33.3%	19	31.5%	possibly_damaging(0.918)	tolerated(0.5)	neutral(0.379)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000245809	0	genome.wustl.edu	37	8	144733662	144733662	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000501748	-1	known	NULL	0.000	155	0%	72	44.4%	17	29.4%	-	-	-	-
PUF60	22827	genome.wustl.edu	37	8	144898838	144898838	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_078480.1	-1	reviewed	p.I511S	1.000	45	0%	208	41.3%	394	43.6%	possibly_damaging(0.884)	tolerated(0.08)	deleterious(0.645)	HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
RPL8	6132	genome.wustl.edu	37	8	146015195	146015195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000973.3	-1	reviewed	p.E256D	1.000	85	0%	53	37.7%	3060	43%	benign(0.003)	tolerated(0.14)	neutral(0.249)	NULL
DOCK8	81704	genome.wustl.edu	37	9	420548	420548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203447.3	+1	reviewed	p.L1262I	1.000	206	0%	226	42%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
DOCK8	81704	genome.wustl.edu	37	9	426946	426946	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203447.3	+1	reviewed	p.L1367V	0.998	70	0%	61	52.5%	3	0%	benign(0.084)	deleterious(0)	neutral(0.451)	NULL
DOCK8	81704	genome.wustl.edu	37	9	463592	463592	+	Missense_Mutation	SNP	G	G	T	rs189711349	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203447.3	+1	reviewed	p.K1980N	1.000	74	0%	61	39.3%	4	0%	possibly_damaging(0.745)	deleterious(0.01)	deleterious(0.679)	HMMPfam_Ded_cyto
DMRT2	10655	genome.wustl.edu	37	9	1056959	1056959	+	Nonsense_Mutation	SNP	G	G	T	rs17641078	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181872.4	+1	reviewed	p.E458*	1.000	164	0%	74	47.3%	0	-	-	-	-	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2123867	2123867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003070.3	+1	reviewed	p.F1304S	1.000	44	0%	26	46.2%	32	28.1%	benign(0.278)	tolerated(0.09)	neutral(0.327)	NULL
VLDLR	7436	genome.wustl.edu	37	9	2644784	2644784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003383.3	+1	reviewed	p.D373Y	1.000	203	0%	139	43.2%	54	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
KIAA0020	9933	genome.wustl.edu	37	9	2831275	2831275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014878.4	-1	validated	p.K196Q	0.996	228	0%	105	41%	23	47.8%	benign(0)	tolerated(1)	-	HMMSmart_SM00025,superfamily_ARM repeat
GLIS3	169792	genome.wustl.edu	37	9	4118870	4118870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042413.1	-1	reviewed	p.S203L	0.999	112	0%	39	38.5%	8	62.5%	unknown(0)	tolerated(0.15)	-	NULL
SLC1A1	6505	genome.wustl.edu	37	9	4585483	4585483	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000422398	+1	known	p.E218*	1.000	243	0%	71	39.4%	15	40%	benign(0.071)	deleterious(0)	neutral(0.450)	NULL
CDC37L1	55664	genome.wustl.edu	37	9	4697126	4697126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017913.2	+1	validated	p.R180I	1.000	436	0%	342	46.2%	25	20%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_CDC37_M,superfamily_SSF101391
JAK2	3717	genome.wustl.edu	37	9	5050716	5050716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004972.3	+1	reviewed	p.K167Q	1.000	171	0%	77	41.6%	2	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMSmart_B41
JAK2	3717	genome.wustl.edu	37	9	5055758	5055758	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004972.3	+1	reviewed	p.V342	0.993	154	0%	69	31.9%	2	50%	-	-	-	NULL
INSL6	11172	genome.wustl.edu	37	9	5164144	5164144	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007179.2	-1	reviewed	p.I137	0.000	250	0%	124	22.6%	0	-	-	-	-	HMMPfam_Insulin,HMMSmart_IlGF,superfamily_Insulin-like
INSL4	3641	genome.wustl.edu	37	9	5231605	5231605	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002195.1	+1	reviewed	p.L28	0.000	89	0%	11	45.5%	1	0%	-	-	-	NULL
RLN1	6013	genome.wustl.edu	37	9	5335427	5335427	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006911.2	-1	reviewed	p.E128*	0.015	358	0%	156	35.3%	0	-	-	-	-	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like
KIAA1432	57589	genome.wustl.edu	37	9	5772723	5772723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020829.2	+1	validated	p.K1180T	1.000	166	0%	52	42.3%	9	33.3%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
ERMP1	79956	genome.wustl.edu	37	9	5810024	5810024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024896.2	-1	validated	p.R512I	1.000	147	0%	143	49.7%	16	43.7%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5920090	5920090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017969.2	-1	validated	p.S1969Y	0.990	262	0%	104	46.2%	8	50%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5954061	5954061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017969.2	-1	validated	p.K749N	1.000	410	0%	332	41.6%	2	100%	unknown(0)	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5969033	5969033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017969.2	-1	validated	p.C400R	1.000	73	0%	29	24.1%	0	-	probably_damaging(0.959)	tolerated(0.45)	neutral(0.415)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5988524	5988524	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017969.2	-1	validated	p.T205	1.000	269	0%	86	11.6%	5	0%	-	-	-	NULL
GLDC	2731	genome.wustl.edu	37	9	6553497	6553497	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000170.2	-1	reviewed	p.L776	0.993	239	0%	103	39.8%	0	-	-	-	-	superfamily_PyrdxlP-dep_Trfase_major
KDM4C	23081	genome.wustl.edu	37	9	7049188	7049188	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015061.3	+1	reviewed	p.Q804	1.000	158	0%	38	34.2%	11	36.3%	-	-	-	NULL
PTPRD	5789	genome.wustl.edu	37	9	8504401	8504401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002839.3	-1	reviewed	p.R561Q	0.952	446	0%	113	43.4%	0	-	benign(0.112)	tolerated(0.64)	neutral(0.012)	HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRD	5789	genome.wustl.edu	37	9	8518043	8518043	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002839.3	-1	reviewed	p.G450*	1.000	380	0%	129	45.7%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MPDZ	8777	genome.wustl.edu	37	9	13140084	13140084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003829.3	-1	validated	p.P1302H	1.000	120	0%	30	53.3%	4	50%	possibly_damaging(0.846)	deleterious(0.01)	deleterious(0.731)	NULL
CER1	9350	genome.wustl.edu	37	9	14720372	14720372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005454.2	-1	reviewed	p.E174K	0.999	183	0%	32	50%	0	-	probably_damaging(0.979)	tolerated(0.05)	deleterious(0.767)	HMMPfam_DAN,HMMSmart_CT
CER1	9350	genome.wustl.edu	37	9	14722211	14722211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005454.2	-1	reviewed	p.S154R	1.000	268	0%	57	49.1%	0	-	probably_damaging(0.982)	tolerated(0.19)	deleterious(0.476)	HMMPfam_DAN
FREM1	158326	genome.wustl.edu	37	9	14748604	14748604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144966.5	-1	reviewed	p.S1864N	0.988	196	0%	49	30.6%	8	25%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
FREM1	158326	genome.wustl.edu	37	9	14824059	14824059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144966.5	-1	reviewed	p.K711N	0.982	112	0%	56	57.1%	1	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
PSIP1	11168	genome.wustl.edu	37	9	15468971	15468971	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128217.1	-1	validated	p.I397S	1.000	127	0%	70	40%	89	35.9%	benign(0.304)	deleterious(0)	deleterious(0.539)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15729649	15729649	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173550.2	+1	predicted	p.T634	0.216	65	0%	12	66.7%	4	75%	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15744767	15744767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173550.2	+1	predicted	p.K849T	0.987	83	0%	36	47.2%	3	66.6%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15784506	15784506	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173550.2	+1	predicted	e20-1	1.000	317	0%	59	50.8%	0	-	-	-	-	-
C9orf93	203238	genome.wustl.edu	37	9	15784593	15784593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173550.2	+1	predicted	p.L1056F	1.000	331	0%	41	41.5%	5	60%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
BNC2	54796	genome.wustl.edu	37	9	16419317	16419317	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017637.5	-1	validated	p.L990	0.056	215	0%	51	58.8%	0	-	-	-	-	NULL
BNC2	54796	genome.wustl.edu	37	9	16436132	16436132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017637.5	-1	validated	p.S687Y	1.000	213	0%	61	57.4%	1	0%	possibly_damaging(0.861)	deleterious(0.03)	deleterious(0.698)	NULL
BNC2	54796	genome.wustl.edu	37	9	16437447	16437447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017637.5	-1	validated	p.L249M	1.000	50	0%	19	42.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17298293	17298293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017738.2	+1	validated	p.Q363H	0.876	114	0%	67	38.8%	5	40%	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17394991	17394991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017738.2	+1	validated	p.N847D	1.000	158	0%	27	74.1%	7	71.4%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
FAM154A	158297	genome.wustl.edu	37	9	18928291	18928291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153707.1	-1	predicted	p.G395D	0.000	193	0%	74	39.2%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
HAUS6	54801	genome.wustl.edu	37	9	19078269	19078269	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017645.3	-1	provisional	p.R366	0.290	96	0%	96	54.2%	5	40%	-	-	-	NULL
DENND4C	55667	genome.wustl.edu	37	9	19316629	19316629	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017925.4	+1	provisional	p.K297N	0.995	60	0%	85	37.6%	4	0%	probably_damaging(0.955)	tolerated(0.58)	neutral(0.404)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19346864	19346864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017925.4	+1	provisional	p.R1081Q	0.227	103	0%	60	35%	10	40%	possibly_damaging(0.619)	deleterious(0.04)	deleterious(0.565)	NULL
LOC392288	392288	genome.wustl.edu	37	9	19460967	19460967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_373277.5	-1	model	p.V364A	0.997	125	0%	174	39.7%	0	-	-	-	-	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
SLC24A2	25769	genome.wustl.edu	37	9	19520959	19520959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020344.1	-1	provisional	p.R557W	1.000	229	0%	38	39.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_Ca_ex
KIAA1797	54914	genome.wustl.edu	37	9	20862602	20862602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017794.3	+1	validated	p.N649S	1.000	372	0%	88	45.5%	16	37.5%	benign(0.002)	tolerated(0.55)	neutral(0.007)	superfamily_ARM-type_fold
KIAA1797	54914	genome.wustl.edu	37	9	20981509	20981509	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017794.3	+1	validated	p.N1488H	0.925	164	0%	96	39.6%	37	51.3%	benign(0.296)	tolerated(0.13)	neutral(0.344)	superfamily_ARM-type_fold
PTPLAD2	401494	genome.wustl.edu	37	9	21015926	21015926	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010915.3	-1	validated	p.F118	1.000	326	0%	105	48.6%	5	40%	-	-	-	HMMPfam_PTPLA
IFNA10	3446	genome.wustl.edu	37	9	21206778	21206778	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002171.1	-1	provisional	p.K107Q	0.000	284	0%	184	39.1%	0	-	benign(0.002)	tolerated(0.92)	-	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
IFNA16	3449	genome.wustl.edu	37	9	21216778	21216778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002173.2	-1	provisional	p.S176Y	0.036	230	0%	198	43.4%	0	-	probably_damaging(0.997)	tolerated(0.22)	deleterious(0.508)	HMMPfam_Interferon,superfamily_4-helical cytokines
IFNA16	3449	genome.wustl.edu	37	9	21217037	21217037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002173.2	-1	provisional	p.L90I	0.132	171	0.6%	114	49.1%	0	-	possibly_damaging(0.923)	tolerated(0.07)	deleterious(0.692)	HMMPfam_Interferon,HMMSmart_SM00076,superfamily_4-helical cytokines
IFNA17	3451	genome.wustl.edu	37	9	21228111	21228111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021268.2	-1	validated	p.S21Y	0.326	203	0.5%	83	39.8%	0	-	benign(0.014)	deleterious(0)	neutral(0.445)	HMMPfam_Interferon
IFNA5	3442	genome.wustl.edu	37	9	21305164	21305164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002169.2	-1	validated	p.S31N	0.000	167	0%	71	50.7%	0	-	benign(0.001)	tolerated(0.72)	neutral(0.002)	HMMPfam_Interferon,superfamily_4_helix_cytokine
KLHL9	55958	genome.wustl.edu	37	9	21334545	21334545	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018847.2	-1	validated	p.K105T	1.000	60	0%	51	35.3%	19	57.8%	benign(0.311)	tolerated(0.07)	neutral(0.416)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
IFNA1	3439	genome.wustl.edu	37	9	21440938	21440938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024013.1	+1	validated	p.K144N	0.117	387	0%	194	27.3%	0	-	benign(0.012)	deleterious(0)	neutral(0.445)	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNE	338376	genome.wustl.edu	37	9	21481497	21481497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176891.4	-1	validated	p.S66Y	0.005	146	0%	74	17.6%	0	-	possibly_damaging(0.637)	deleterious(0.02)	deleterious(0.606)	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNE	338376	genome.wustl.edu	37	9	21481667	21481667	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176891.4	-1	validated	p.T9	0.000	21	0%	24	50%	0	-	-	-	-	HMMPfam_Interferon
MTAP	4507	genome.wustl.edu	37	9	21854695	21854695	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002451.3	+1	reviewed	p.I172	0.120	96	0%	17	47.1%	29	31%	-	-	-	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
PLAA	9373	genome.wustl.edu	37	9	26905933	26905933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031689.2	-1	validated	p.N655T	1.000	92	0%	68	45.6%	72	51.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PUL,superfamily_ARM-type_fold
IFT74	80173	genome.wustl.edu	37	9	26980603	26980603	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099222.1	+1	validated	p.Y97*	1.000	339	0%	231	41.6%	5	0%	-	-	-	NULL
LRRC19	64922	genome.wustl.edu	37	9	26996408	26996408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022901.2	-1	validated	p.K229E	0.056	92	0%	120	38.3%	0	-	possibly_damaging(0.731)	tolerated(0.36)	neutral(0.287)	superfamily_L domain-like
LRRC19	64922	genome.wustl.edu	37	9	26997939	26997939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022901.2	-1	validated	p.L128I	1.000	208	0%	210	41.9%	0	-	probably_damaging(0.972)	deleterious(0.03)	deleterious(0.778)	HMMSmart_SM00369,superfamily_L domain-like
IFT74	80173	genome.wustl.edu	37	9	27048262	27048262	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099222.1	+1	validated	p.N441	1.000	37	0%	47	10.6%	10	30%	-	-	-	NULL
TEK	7010	genome.wustl.edu	37	9	27197312	27197312	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000459.3	+1	reviewed	e12-1	1.000	45	2.2%	21	61.9%	0	-	-	-	-	-
LINGO2	158038	genome.wustl.edu	37	9	27950434	27950434	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152570.1	-1	provisional	p.S79*	0.503	306	0%	100	39%	0	-	-	-	-	superfamily_SSF52058
LOC100288436	100288436	genome.wustl.edu	37	9	30559294	30559294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342887.1	-1	model	p.E48D	0.054	103	0%	75	44%	12	0%	-	-	-	NULL
ACO1	48	genome.wustl.edu	37	9	32423394	32423394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002197.2	+1	reviewed	p.S350P	0.498	233	0%	63	12.7%	10	10%	benign(0.193)	deleterious(0.04)	neutral(0.367)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
DDX58	23586	genome.wustl.edu	37	9	32477110	32477110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014314.3	-1	reviewed	p.E598D	0.017	194	0%	153	49%	20	40%	benign(0.362)	deleterious(0.05)	neutral(0.460)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TOPORS	10210	genome.wustl.edu	37	9	32544292	32544292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005802.3	-1	reviewed	p.M77I	1.000	52	0%	38	36.8%	4	75%	unknown(0)	deleterious(0.02)	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32631388	32631388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153809.2	-1	provisional	p.R1397H	1.000	520	0%	181	48.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_BROMO,superfamily_Bromodomain
TAF1L	138474	genome.wustl.edu	37	9	32633289	32633289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153809.2	-1	provisional	p.E763D	1.000	447	0.2%	348	39.1%	0	-	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	NULL
TMEM215	401498	genome.wustl.edu	37	9	32784354	32784354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_212558.2	+1	validated	p.A58V	1.000	148	0%	50	48%	0	-	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33529077	33529077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001718334.2	+1	model	p.G262D	0.977	131	0%	157	43.3%	0	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD18B	441459	genome.wustl.edu	37	9	33536922	33536922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001718334.2	+1	model	p.H391N	0.001	78	0%	130	41.5%	0	-	benign(0.017)	tolerated(0.28)	neutral(0.032)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33548174	33548174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001718334.2	+1	model	p.N529T	0.553	198	0%	100	45%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33548335	33548335	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001718334.2	+1	model	p.L583I	0.733	236	0%	105	41.9%	0	-	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33566403	33566403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001718334.2	+1	model	p.D949Y	0.002	20	0%	28	35.7%	0	-	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33568882	33568882	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001718334.2	+1	model	p.S1122	0.026	87	0%	84	51.2%	0	-	-	-	-	NULL
UBAP1	51271	genome.wustl.edu	37	9	34250704	34250704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016525.4	+1	reviewed	p.D439N	1.000	145	0%	168	39.9%	75	38.6%	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	NULL
KIF24	347240	genome.wustl.edu	37	9	34257585	34257585	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194313.2	-1	validated	p.R674*	0.021	106	0%	54	33.3%	2	0%	-	-	-	NULL
FAM205A	259308	genome.wustl.edu	37	9	34723774	34723774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001141917.1	-1	validated	p.P1155T	0.004	126	0%	99	34.3%	0	-	possibly_damaging(0.886)	tolerated(0.15)	deleterious(0.587)	NULL
FAM205A	259308	genome.wustl.edu	37	9	34724644	34724644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001141917.1	-1	validated	p.T865A	0.000	73	0%	105	35.2%	0	-	benign(0.073)	tolerated(0.11)	neutral(0.277)	NULL
ENSG00000232067	0	genome.wustl.edu	37	9	34834986	34834986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000455647	-1	known	p.S168Y	0.923	123	0%	80	8.7%	0	-	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	NULL
DNAJB5	25822	genome.wustl.edu	37	9	34993342	34993342	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135005.1	+1	validated	p.E110*	1.000	73	0%	56	42.9%	8	62.5%	-	-	-	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
C9orf131	138724	genome.wustl.edu	37	9	35042394	35042394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203299.2	+1	validated	p.F48S	1.000	433	0%	60	41.7%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
PIGO	84720	genome.wustl.edu	37	9	35094286	35094286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032634.2	-1	reviewed	p.F194L	1.000	221	0%	115	43.5%	18	44.4%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
FAM214B	80256	genome.wustl.edu	37	9	35107989	35107989	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025182.2	-1	predicted	p.E95*	1.000	26	0%	15	46.7%	6	16.6%	-	-	-	NULL
FAM214B	80256	genome.wustl.edu	37	9	35108113	35108113	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025182.2	-1	predicted	p.F53	1.000	8	0.000	10	0.700	0	-	-	-	-	NULL
LOC730110	730110	genome.wustl.edu	37	9	35148270	35148270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342891.1	-1	model	p.K304N	0.998	23	0%	54	55.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
UNC13B	10497	genome.wustl.edu	37	9	35237793	35237793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006377.3	+1	reviewed	p.L122V	1.000	164	0%	87	51.7%	2	50%	benign(0.033)	deleterious(0)	neutral(0.446)	superfamily_C2_CaLB
UNC13B	10497	genome.wustl.edu	37	9	35389944	35389944	+	Missense_Mutation	SNP	G	G	T	rs190693606	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006377.3	+1	reviewed	p.K983N	1.000	249	0%	82	45.1%	15	60%	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	HMMPfam_DUF1041
RUSC2	9853	genome.wustl.edu	37	9	35557958	35557958	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135999.1	+1	validated	p.F1011V	1.000	236	0.4%	72	51.4%	15	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RGP1	9827	genome.wustl.edu	37	9	35750849	35750849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080496.1	+1	provisional	p.E157G	1.000	148	0%	118	46.6%	4	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Rgp1
NPR2	4882	genome.wustl.edu	37	9	35800118	35800118	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003995.3	+1	reviewed	p.R363*	0.991	350	0%	137	50.4%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
NPR2	4882	genome.wustl.edu	37	9	35802783	35802783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003995.3	+1	reviewed	p.I624V	1.000	436	0.2%	188	40.4%	7	57.1%	benign(0.086)	deleterious(0.02)	neutral(0.390)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SPAG8	26206	genome.wustl.edu	37	9	35811994	35811994	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172312.1	-1	reviewed	p.L17V	0.019	29	0%	21	52.4%	1	100%	unknown(0)	deleterious(0)	-	NULL
C9orf128	392307	genome.wustl.edu	37	9	35825640	35825640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012446.2	-1	validated	p.E173D	0.636	371	0%	405	44.4%	0	-	benign(0.055)	tolerated(0.11)	neutral(0.275)	NULL
OR13J1	392309	genome.wustl.edu	37	9	35869601	35869601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004487.1	-1	provisional	p.E266D	0.000	224	0%	51	45.1%	0	-	benign(0.008)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RECK	8434	genome.wustl.edu	37	9	36121555	36121555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021111.2	+1	reviewed	p.V855G	1.000	120	0%	113	45.1%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GNE	10020	genome.wustl.edu	37	9	36234070	36234070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128227.1	-1	reviewed	p.R308C	1.000	172	0%	97	37.1%	11	72.7%	possibly_damaging(0.944)	tolerated(0.06)	deleterious(0.711)	HMMPfam_Epimerase_2,superfamily_SSF53756
FBXO10	26267	genome.wustl.edu	37	9	37541743	37541743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012166.2	-1	validated	p.L8S	1.000	22	0%	13	53.8%	4	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
FRMPD1	22844	genome.wustl.edu	37	9	37719098	37719098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014907.2	+1	validated	p.E147D	1.000	139	0%	69	46.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PDZ
FRMPD1	22844	genome.wustl.edu	37	9	37745905	37745905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014907.2	+1	validated	p.E1292D	0.030	115	0%	85	47.1%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37746120	37746120	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014907.2	+1	validated	p.A1364G	0.809	39	0%	28	64.3%	0	-	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37746210	37746210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014907.2	+1	validated	p.S1394L	0.000	21	0%	18	38.9%	0	-	benign(0.178)	deleterious(0.02)	neutral(0.400)	NULL
RG9MTD3	158234	genome.wustl.edu	37	9	37762635	37762635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144964.2	+1	validated	p.R83I	1.000	127	0%	119	33.6%	8	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MCART1	92014	genome.wustl.edu	37	9	37887836	37887836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033412.3	-1	validated	p.R238C	1.000	113	0%	184	40.2%	14	42.8%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ANKRD18A	253650	genome.wustl.edu	37	9	38611219	38611219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000399703	-1	known	p.F199V	0.000	185	0%	205	10.7%	0	-	benign(0.021)	tolerated(0.33)	neutral(0.025)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD18A	253650	genome.wustl.edu	37	9	38611274	38611274	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000399703	-1	known	p.Q180	0.178	219	0%	249	40.2%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ZNF658	26149	genome.wustl.edu	37	9	40772208	40772208	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033160.5	-1	validated	p.E1023*	0.859	149	0%	85	25.9%	8	25%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40772822	40772822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033160.5	-1	validated	p.R818I	1.000	240	0%	127	38.6%	3	33.3%	probably_damaging(0.975)	tolerated(0.23)	neutral(0.458)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF658	26149	genome.wustl.edu	37	9	40774334	40774334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033160.5	-1	validated	p.Q314R	0.000	330	0%	202	44.6%	1	100%	benign(0.023)	tolerated(0.68)	neutral(0.003)	superfamily_C2H2 and C2HC zinc fingers
LOC100289454	100289454	genome.wustl.edu	37	9	44067650	44067650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002342913.1	-1	model	p.Q58H	0.992	29	0%	26	57.7%	0	-	-	-	-	NULL
CBWD6	644019	genome.wustl.edu	37	9	69205472	69205472	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001085457.1	-1	provisional	p.R356*	1.000	288	0%	157	33.8%	7	42.8%	-	-	-	HMMPfam_CobW_C,superfamily_Cbl_biosynth_CobW-like_C
FAM122A	116224	genome.wustl.edu	37	9	71395725	71395725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138333.3	+1	validated	p.K215N	1.000	133	0%	114	36%	22	22.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PIP5K1B	8395	genome.wustl.edu	37	9	71504008	71504008	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003558.2	+1	validated	p.E144*	1.000	296	0%	171	48.5%	0	-	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PIP5K1B	8395	genome.wustl.edu	37	9	71532490	71532490	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003558.2	+1	validated	p.D266	1.000	205	0%	115	40.9%	2	0%	-	-	-	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PRKACG	5568	genome.wustl.edu	37	9	71628877	71628877	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002732.3	-1	reviewed	p.F44	1.000	93	1.1%	43	39.5%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TJP2	9414	genome.wustl.edu	37	9	71840318	71840318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004817.3	+1	reviewed	p.L351I	1.000	27	0%	62	43.5%	21	38%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
C9orf135	138255	genome.wustl.edu	37	9	72459519	72459519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010940.1	+1	validated	p.R80Q	0.895	64	0%	63	50.8%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
MAMDC2	256691	genome.wustl.edu	37	9	72723137	72723137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153267.4	+1	validated	p.I53M	1.000	370	0%	119	42.9%	0	-	possibly_damaging(0.778)	tolerated(0.46)	neutral(0.303)	HMMPfam_MAM,HMMSmart_SM00137
SMC5	23137	genome.wustl.edu	37	9	72893452	72893452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015110.3	+1	validated	p.E197K	1.000	111	0.9%	86	27.9%	13	23%	benign(0.081)	tolerated(0.09)	neutral(0.302)	HMMPfam_SMC_N,superfamily_SSF52540
SMC5	23137	genome.wustl.edu	37	9	72938947	72938947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015110.3	+1	validated	p.S762Y	0.399	50	0%	68	83.8%	15	93.3%	benign(0.075)	deleterious(0.03)	neutral(0.369)	HMMPfam_SMC_N,superfamily_SSF52540
TRPM3	80036	genome.wustl.edu	37	9	73167950	73167950	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007471.2	-1	reviewed	p.F1116L	1.000	174	0%	43	48.8%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73399023	73399023	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000396280	-1	known	p.R229W	1.000	176	0%	30	50%	0	-	-	-	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73399135	73399135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007471.2	-1	reviewed	p.S345L	0.998	173	0%	44	52.3%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74305044	74305044	+	Missense_Mutation	SNP	C	C	T	rs185936154	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013390.2	-1	validated	p.R1272H	0.000	140	0%	46	39.1%	29	44.8%	benign(0.036)	tolerated(0.26)	neutral(0.036)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74365057	74365057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013390.2	-1	validated	p.R78I	1.000	124	0%	80	36.2%	9	33.3%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
RORB	6096	genome.wustl.edu	37	9	77249628	77249628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006914.3	+1	reviewed	p.R59G	1.000	90	0%	23	47.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
RORB	6096	genome.wustl.edu	37	9	77277434	77277434	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006914.3	+1	reviewed	p.H268	0.997	194	0%	68	52.9%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
RORB	6096	genome.wustl.edu	37	9	77286757	77286757	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006914.3	+1	reviewed	p.I388M	1.000	164	0%	60	20%	0	-	benign(0.108)	deleterious(0.02)	neutral(0.392)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TRPM6	140803	genome.wustl.edu	37	9	77359092	77359092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000361255	-1	known	p.I1682L	1.000	127	0%	111	40.5%	0	-	benign(0.25)	tolerated(0.37)	neutral(0.044)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77403589	77403589	+	Missense_Mutation	SNP	C	C	T	rs180963446	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017662.4	-1	reviewed	p.V870M	0.980	166	0%	41	34.1%	0	-	probably_damaging(0.988)	tolerated(0.18)	deleterious(0.493)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77455146	77455146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017662.4	-1	reviewed	p.R113I	1.000	161	0%	96	51%	0	-	unknown(0)	deleterious(0)	-	NULL
C9orf41	138199	genome.wustl.edu	37	9	77614687	77614687	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152420.1	-1	predicted	p.W230*	1.000	102	0%	69	46.4%	2	0%	-	-	-	HMMPfam_N2227,superfamily_SSF53335
PCSK5	5125	genome.wustl.edu	37	9	78749036	78749036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006200.3	+1	reviewed	p.T407N	1.000	257	0%	42	33.3%	0	-	possibly_damaging(0.758)	deleterious(0.02)	deleterious(0.663)	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
PCSK5	5125	genome.wustl.edu	37	9	78784711	78784711	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006200.3	+1	reviewed	p.E571*	1.000	212	0%	63	39.7%	1	0%	-	-	-	HMMPfam_P_proprotein,superfamily_Galactose-binding domain-like
PCSK5	5125	genome.wustl.edu	37	9	78808227	78808227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006200.3	+1	reviewed	p.L901I	1.000	257	0%	72	40.3%	1	0%	benign(0.026)	tolerated(0.13)	neutral(0.254)	HMMPfam_PLAC
PRUNE2	158471	genome.wustl.edu	37	9	79267457	79267457	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000426088	-1	known	p.Q2155K	1.000	270	0%	66	16.7%	1	0%	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79324138	79324138	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015225.2	-1	validated	p.S1018A	0.000	238	0%	187	46.5%	0	-	possibly_damaging(0.781)	tolerated(0.8)	neutral(0.293)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79324317	79324317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015225.2	-1	validated	p.S958L	0.317	220	0%	195	36.4%	0	-	benign(0.125)	tolerated(1)	neutral(0.011)	NULL
FOXB2	442425	genome.wustl.edu	37	9	79634910	79634910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013735.1	+1	provisional	p.A114T	0.990	6	0.000	16	0.500	0	-	unknown(0)	tolerated(0.08)	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79836245	79836245	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033305.2	+1	reviewed	p.P378	0.278	126	0%	77	51.9%	2	0%	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79888212	79888212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033305.2	+1	reviewed	p.S815Y	0.005	149	0%	165	40%	0	-	benign(0.258)	deleterious(0.04)	neutral(0.376)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79972732	79972732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033305.2	+1	reviewed	p.R2644I	1.000	53	0%	34	50%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79980412	79980412	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033305.2	+1	reviewed	p.E2750*	0.994	127	0%	140	45.7%	6	16.6%	-	-	-	NULL
GNA14	9630	genome.wustl.edu	37	9	80038963	80038963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004297.3	-1	reviewed	p.R334C	1.000	176	0%	125	36.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLE4	7091	genome.wustl.edu	37	9	82319777	82319777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007005.3	+1	validated	p.K230R	1.000	256	0%	99	42.4%	1	0%	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
TLE4	7091	genome.wustl.edu	37	9	82321803	82321803	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007005.3	+1	validated	p.E309*	1.000	419	0%	111	42.3%	1	0%	-	-	-	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84603818	84603818	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001670.2	+1	validated	p.F29I	0.000	1437	0%	401	36.2%	0	-	possibly_damaging(0.616)	tolerated(0.13)	neutral(0.467)	NULL
FAM75D1	389763	genome.wustl.edu	37	9	84607947	84607947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001670.2	+1	validated	p.W854*	0.001	329	0%	161	45.3%	0	-	-	-	-	NULL
RASEF	158158	genome.wustl.edu	37	9	85615102	85615102	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152573.2	-1	provisional	p.N569H	1.000	235	0%	94	43.6%	10	40%	possibly_damaging(0.496)	deleterious(0.05)	deleterious(0.511)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RASEF	158158	genome.wustl.edu	37	9	85637289	85637289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152573.2	-1	provisional	p.Q211K	1.000	632	0%	159	41.5%	12	41.6%	possibly_damaging(0.825)	tolerated(0.19)	neutral(0.362)	NULL
FRMD3	257019	genome.wustl.edu	37	9	85914034	85914034	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174938.4	-1	validated	p.R332*	1.000	390	0%	240	33.3%	0	-	-	-	-	HMMPfam_FA,superfamily_PH domain-like
KIF27	55582	genome.wustl.edu	37	9	86482758	86482758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017576.1	-1	provisional	p.K925N	1.000	105	0%	186	45.2%	4	25%	possibly_damaging(0.739)	deleterious(0)	deleterious(0.715)	NULL
RMI1	80010	genome.wustl.edu	37	9	86617656	86617656	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024945.2	+1	validated	p.L585	1.000	166	0%	161	44.1%	9	44.4%	-	-	-	NULL
SLC28A3	64078	genome.wustl.edu	37	9	86900348	86900348	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022127.1	-1	provisional	p.F520C	1.000	210	0%	120	50%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Nucleos_tra2_C
NTRK2	4915	genome.wustl.edu	37	9	87285871	87285871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006180.3	+1	reviewed	p.E70K	1.000	108	0%	32	37.5%	0	-	benign(0.336)	tolerated(0.11)	neutral(0.378)	superfamily_SSF52058
NTRK2	4915	genome.wustl.edu	37	9	87317111	87317111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006180.3	+1	reviewed	p.E84K	1.000	298	0%	110	19.1%	0	-	benign(0.208)	tolerated(0.72)	neutral(0.022)	superfamily_SSF52058
NTRK2	4915	genome.wustl.edu	37	9	87359925	87359925	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006180.3	+1	reviewed	p.T411	0.160	257	0%	78	57.7%	0	-	-	-	-	NULL
AGTPBP1	23287	genome.wustl.edu	37	9	88257803	88257803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015239.2	-1	validated	p.R374Q	1.000	228	0%	252	44.8%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AGTPBP1	23287	genome.wustl.edu	37	9	88272469	88272469	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015239.2	-1	validated	p.R264	1.000	137	0%	59	54.2%	13	53.8%	-	-	-	superfamily_ARM-type_fold
NAA35	60560	genome.wustl.edu	37	9	88592349	88592349	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024635.3	+1	validated	p.F250L	1.000	195	0%	98	34.7%	22	72.7%	benign(0.336)	tolerated(0.63)	neutral(0.110)	NULL
GOLM1	51280	genome.wustl.edu	37	9	88648244	88648244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016548.3	-1	reviewed	p.E361G	0.604	700	0%	335	44.2%	243	47.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88937268	88937268	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024617.3	-1	validated	p.I1000	0.986	150	0%	85	48.2%	8	25%	-	-	-	superfamily_Nucleotidyltransferase
C9orf170	401535	genome.wustl.edu	37	9	89771491	89771491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001709.2	+1	validated	p.L58M	0.003	61	0%	44	38.6%	0	-	unknown(0)	-	-	NULL
DAPK1	1612	genome.wustl.edu	37	9	90258300	90258300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004938.2	+1	reviewed	p.R310C	1.000	106	0%	32	34.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90322224	90322224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004938.2	+1	reviewed	p.S1413L	0.918	43	0%	31	54.8%	18	27.7%	benign(0.039)	deleterious(0.02)	neutral(0.385)	NULL
C9orf79	286234	genome.wustl.edu	37	9	90501794	90501794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178828.4	+1	validated	p.K798E	0.000	108	0%	45	60%	0	-	benign(0.052)	tolerated(1)	neutral(0.003)	NULL
SPIN1	10927	genome.wustl.edu	37	9	91077582	91077582	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006717.2	+1	validated	p.Y91	1.000	257	0%	104	51.9%	24	45.8%	-	-	-	HMMPfam_Spin-Ssty
LOC286238	286238	genome.wustl.edu	37	9	91262452	91262452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100111.1	-1	validated	p.T64I	0.002	216	0%	136	44.9%	0	-	-	-	-	NULL
C9orf47	286223	genome.wustl.edu	37	9	91606756	91606756	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000375850	+1	known	p.T187	0.003	46	0%	29	48.3%	0	-	-	-	-	NULL
SHC3	53358	genome.wustl.edu	37	9	91690043	91690043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016848.4	-1	validated	p.R237Q	1.000	189	0%	49	44.9%	0	-	benign(0.299)	tolerated(0.07)	neutral(0.411)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SECISBP2	79048	genome.wustl.edu	37	9	91934609	91934609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024077.3	+1	reviewed	p.F27V	0.998	110	0%	160	48.1%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NOL8	55035	genome.wustl.edu	37	9	95078225	95078225	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017948.5	-1	validated	p.S228R	0.000	238	0%	107	47.7%	10	50%	possibly_damaging(0.718)	tolerated(0.34)	neutral(0.283)	NULL
NOL8	55035	genome.wustl.edu	37	9	95078277	95078277	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017948.5	-1	validated	p.F210	0.979	385	0%	124	43.5%	14	50%	-	-	-	NULL
CENPP	401541	genome.wustl.edu	37	9	95099829	95099829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012267.1	+1	validated	p.R99I	0.993	82	0%	89	40.4%	4	50%	possibly_damaging(0.836)	deleterious(0.04)	deleterious(0.668)	NULL
OGN	4969	genome.wustl.edu	37	9	95152322	95152322	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014057.3	-1	reviewed	p.L148	0.873	111	0%	194	42.3%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
OMD	4958	genome.wustl.edu	37	9	95179223	95179223	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005014.2	-1	validated	p.K206N	0.000	146	0%	90	47.8%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00369,superfamily_L domain-like
ASPN	54829	genome.wustl.edu	37	9	95232983	95232983	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017680.3	-1	validated	p.E119*	1.000	258	0%	223	43.9%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
BICD2	23299	genome.wustl.edu	37	9	95481751	95481751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003800.1	-1	reviewed	p.E392D	1.000	47	0%	39	56.4%	13	53.8%	benign(0.041)	tolerated(0.34)	neutral(0.025)	HMMPfam_BicD
C9orf129	445577	genome.wustl.edu	37	9	96097679	96097679	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098808.1	-1	provisional	p.D114	0.939	153	0%	58	44.8%	16	0%	-	-	-	NULL
FAM120A	23196	genome.wustl.edu	37	9	96261097	96261097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014612.3	+1	validated	p.R320Q	1.000	204	0%	224	46.4%	30	43.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ZNF169	169841	genome.wustl.edu	37	9	97062891	97062891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194320.2	+1	validated	p.C351R	0.998	90	0%	45	48.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM22F	54754	genome.wustl.edu	37	9	97081946	97081946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017561.1	-1	validated	p.F478L	0.000	233	0%	223	37.7%	0	-	probably_damaging(0.988)	tolerated(1)	neutral(0.438)	NULL
HIATL1	84641	genome.wustl.edu	37	9	97221466	97221466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000447692	+1	known	p.V136I	0.570	291	0%	141	43.3%	32	53.1%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
FANCC	2176	genome.wustl.edu	37	9	98003008	98003008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000136.2	-1	reviewed	p.L90I	1.000	80	0%	222	39.2%	3	100%	benign(0.211)	deleterious(0.05)	neutral(0.366)	HMMPfam_Fanconi_C
PTCH1	5727	genome.wustl.edu	37	9	98220556	98220556	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000264.3	-1	reviewed	p.I969	0.066	39	0%	25	44%	8	12.5%	-	-	-	HMMPfam_Patched
C9orf102	375748	genome.wustl.edu	37	9	98684594	98684594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010895.2	+1	validated	p.S447Y	0.596	133	0%	30	50%	9	44.4%	possibly_damaging(0.712)	deleterious(0)	deleterious(0.702)	HMMPfam_SNF2_N
C9orf102	375748	genome.wustl.edu	37	9	98775266	98775266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000407474	+1	known	p.F459L	1.000	42	0%	50	50%	9	11.1%	benign(0.097)	tolerated(0.11)	neutral(0.279)	NULL
ZNF782	158431	genome.wustl.edu	37	9	99581298	99581298	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001662.1	-1	provisional	p.K336T	0.009	179	0%	87	46%	4	50%	possibly_damaging(0.569)	deleterious(0)	deleterious(0.639)	superfamily_C2H2 and C2HC zinc fingers
ZNF322P1	387328	genome.wustl.edu	37	9	99961590	99961590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199005.1	-1	validated	p.E68D	1.000	188	0%	192	59.4%	5	0%	possibly_damaging(0.443)	deleterious(0.01)	deleterious(0.550)	superfamily_SSF57667
TSTD2	158427	genome.wustl.edu	37	9	100388052	100388052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139246.4	-1	validated	p.K131N	0.001	221	0%	110	40%	3	33.3%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
NCBP1	4686	genome.wustl.edu	37	9	100420939	100420939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002486.4	+1	reviewed	p.R464H	1.000	326	0%	258	44.6%	28	42.8%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_MIF4G_like,superfamily_ARM-type_fold
C9orf156	51531	genome.wustl.edu	37	9	100672590	100672590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016481.3	-1	validated	p.I240V	0.000	240	0%	166	42.2%	12	58.3%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
ANP32B	10541	genome.wustl.edu	37	9	100757060	100757060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006401.2	+1	validated	p.K68Q	1.000	82	0%	163	39.9%	233	41.2%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Outer arm dynein light chain 1
ANP32B	10541	genome.wustl.edu	37	9	100760861	100760861	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006401.2	+1	validated	p.I76	0.999	196	0%	262	39.7%	259	38.2%	-	-	-	superfamily_Outer arm dynein light chain 1
TRIM14	9830	genome.wustl.edu	37	9	100849612	100849612	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000311688	-1	known	p.H236	0.000	198	0%	119	44.5%	2	0%	-	-	-	NULL
CORO2A	7464	genome.wustl.edu	37	9	100888861	100888861	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003389.3	-1	reviewed	p.F472	0.966	97	0%	91	47.3%	1	0%	-	-	-	NULL
TBC1D2	55357	genome.wustl.edu	37	9	100962647	100962647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000375064	-1	known	p.R823C	1.000	92	0%	43	41.9%	16	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
GABBR2	9568	genome.wustl.edu	37	9	101065551	101065551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005458.7	-1	reviewed	p.N795S	1.000	307	0%	121	40.5%	0	-	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
ANKS6	203286	genome.wustl.edu	37	9	101539719	101539719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173551.3	-1	provisional	p.G529*	0.981	105	0%	171	36.8%	12	33.3%	-	-	-	NULL
COL15A1	1306	genome.wustl.edu	37	9	101777744	101777744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001855.3	+1	reviewed	p.E467K	0.001	96	0%	26	42.3%	7	0%	benign(0.004)	tolerated(0.61)	neutral(0.004)	NULL
NR4A3	8013	genome.wustl.edu	37	9	102595719	102595719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173200.1	+1	reviewed	p.D424Y	1.000	208	0.5%	155	41.9%	0	-	possibly_damaging(0.945)	deleterious(0.03)	deleterious(0.754)	superfamily_Str_ncl_receptor
ERP44	23071	genome.wustl.edu	37	9	102784415	102784415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015051.1	-1	validated	p.R127Q	1.000	344	0%	121	54.5%	78	37.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
TEX10	54881	genome.wustl.edu	37	9	103072627	103072627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017746.3	-1	validated	p.R746Q	1.000	212	0%	99	43.4%	53	41.5%	possibly_damaging(0.657)	tolerated(0.19)	neutral(0.281)	NULL
MSANTD3	91283	genome.wustl.edu	37	9	103204339	103204339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080655.1	+1	predicted	p.R40Q	0.421	47	0%	37	40.5%	29	55.1%	probably_damaging(0.995)	tolerated(0.57)	neutral(0.464)	NULL
LPPR1	54886	genome.wustl.edu	37	9	104048497	104048497	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017753.2	+1	reviewed	p.R122*	1.000	133	0%	66	51.5%	0	-	-	-	-	superfamily_AcPase_VanPerase
BAAT	570	genome.wustl.edu	37	9	104133522	104133522	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127610.1	-1	reviewed	p.F55	0.188	111	0%	24	54.2%	0	-	-	-	-	HMMPfam_Bile_Hydr_Trans
ZNF189	7743	genome.wustl.edu	37	9	104170739	104170739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003452.2	+1	validated	p.R230I	1.000	159	0%	56	48.2%	10	50%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_C2H2 and C2HC zinc fingers
ZNF189	7743	genome.wustl.edu	37	9	104171359	104171359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003452.2	+1	validated	p.F437I	1.000	85	0%	32	59.4%	13	53.8%	benign(0.301)	deleterious(0)	deleterious(0.537)	NULL
ALDOB	229	genome.wustl.edu	37	9	104187236	104187236	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000035.3	-1	reviewed	p.W296*	1.000	123	0%	25	24%	0	-	-	-	-	HMMPfam_Glycolytic,superfamily_Aldolase
PPP3R2	5535	genome.wustl.edu	37	9	104357027	104357027	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_147180.2	-1	provisional	p.I62	0.978	55	0%	43	39.5%	0	-	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
CYLC2	1539	genome.wustl.edu	37	9	105767122	105767122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001340.3	+1	reviewed	p.S109Y	0.000	128	0%	65	35.4%	0	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767543	105767543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001340.3	+1	reviewed	p.K210N	0.000	248	0%	159	45.9%	0	-	unknown(0)	tolerated(0.43)	-	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767828	105767828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001340.3	+1	reviewed	p.K305N	0.001	291	0%	133	45.1%	0	-	unknown(0)	tolerated(0.51)	-	NULL
SMC2	10592	genome.wustl.edu	37	9	106892067	106892067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042550.1	+1	validated	p.K978E	1.000	86	0%	29	17.2%	38	36.8%	benign(0.01)	deleterious(0)	neutral(0.445)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR13F1	138805	genome.wustl.edu	37	9	107267209	107267209	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004485.1	+1	provisional	p.L222	0.145	252	0%	99	49.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR13C3	138803	genome.wustl.edu	37	9	107298736	107298736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001961.1	-1	provisional	p.R120I	0.003	264	0%	84	38.1%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_SSF81321
ABCA1	19	genome.wustl.edu	37	9	107558396	107558396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005502.2	-1	reviewed	p.N1774D	1.000	339	0%	43	46.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ABCA1	19	genome.wustl.edu	37	9	107562134	107562134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005502.2	-1	reviewed	p.N1637D	1.000	259	0%	73	52.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ABCA1	19	genome.wustl.edu	37	9	107571802	107571802	+	Missense_Mutation	SNP	C	C	T	rs189206655	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005502.2	-1	reviewed	p.A1407T	1.000	291	0%	98	37.8%	1	0%	benign(0.142)	tolerated(0.67)	neutral(0.015)	NULL
FKTN	2218	genome.wustl.edu	37	9	108380278	108380278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079802.1	+1	reviewed	p.D317Y	1.000	68	0%	52	50%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LicD
FKTN	2218	genome.wustl.edu	37	9	108397408	108397408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079802.1	+1	reviewed	p.E417K	0.316	359	0%	63	42.9%	3	0%	benign(0.002)	tolerated(0.28)	neutral(0.032)	HMMPfam_LicD
TMEM38B	55151	genome.wustl.edu	37	9	108536337	108536337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018112.1	+1	provisional	p.K284N	0.991	120	0%	33	42.4%	6	83.3%	possibly_damaging(0.819)	tolerated(0.13)	deleterious(0.562)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109688180	109688180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021224.4	+1	validated	p.L663I	1.000	218	0.5%	107	35.5%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109689603	109689603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021224.4	+1	validated	p.H1137R	1.000	38	0%	22	50%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	HMMSmart_SM00355,superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109734438	109734438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021224.4	+1	validated	p.E2194K	1.000	286	0.3%	37	40.5%	0	-	probably_damaging(0.971)	tolerated(0.12)	deleterious(0.673)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
ENSG00000199905	0	genome.wustl.edu	37	9	110237391	110237391	+	RNA	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000363035	-1	novel	NULL	0.019	21	0%	59	42.4%	0	-	-	-	-	-
CTNNAL1	8727	genome.wustl.edu	37	9	111727766	111727766	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003798.2	-1	provisional	p.K495*	1.000	155	0%	103	50.5%	41	2.4%	-	-	-	superfamily_alpha-catenin/vinculin
SVEP1	79987	genome.wustl.edu	37	9	113173745	113173745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153366.3	-1	validated	p.F2082L	1.000	37	0%	27	55.6%	4	0%	possibly_damaging(0.882)	tolerated(0.68)	neutral(0.346)	superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113198675	113198675	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153366.3	-1	validated	p.V1583	0.994	191	0%	38	26.3%	1	0%	-	-	-	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
MUSK	4593	genome.wustl.edu	37	9	113547272	113547272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005592.3	+1	reviewed	p.R521I	1.000	269	0%	191	47.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
LPAR1	1902	genome.wustl.edu	37	9	113704261	113704261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001401.3	-1	reviewed	p.R78H	1.000	108	0%	34	61.8%	11	54.5%	possibly_damaging(0.892)	tolerated(0.07)	deleterious(0.670)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2K2	26248	genome.wustl.edu	37	9	114090145	114090145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_205859.1	-1	provisional	p.S190I	0.066	177	0%	62	40.3%	0	-	benign(0.327)	deleterious(0)	deleterious(0.547)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIAA0368	23392	genome.wustl.edu	37	9	114128579	114128579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080398.1	-1	provisional	p.D1928N	1.000	239	0%	77	39%	125	36.8%	benign(0.002)	tolerated(0.13)	neutral(0.253)	superfamily_ARM repeat
KIAA0368	23392	genome.wustl.edu	37	9	114131419	114131419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080398.1	-1	provisional	p.K1848T	0.989	448	0%	99	43.4%	119	45.3%	benign(0.142)	tolerated(0.53)	neutral(0.019)	superfamily_ARM repeat
KIAA0368	23392	genome.wustl.edu	37	9	114134016	114134016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080398.1	-1	provisional	p.G1719V	1.000	216	0%	39	41%	80	53.7%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	superfamily_ARM repeat
ZNF483	158399	genome.wustl.edu	37	9	114305095	114305095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133464.2	+1	validated	p.R627I	0.993	164	0%	53	37.7%	3	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF483	158399	genome.wustl.edu	37	9	114305263	114305263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133464.2	+1	validated	p.R683Q	0.923	127	0%	52	34.6%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C9orf84	158401	genome.wustl.edu	37	9	114490068	114490068	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173521.3	-1	validated	p.K496T	0.997	209	0%	139	51.8%	0	-	benign(0.236)	tolerated(0.36)	neutral(0.043)	NULL
SUSD1	64420	genome.wustl.edu	37	9	114874078	114874078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000374263	-1	known	p.R343C	0.974	551	0.2%	128	56.2%	19	36.8%	benign(0.118)	deleterious(0.01)	neutral(0.415)	NULL
PTBP3	9991	genome.wustl.edu	37	9	115030442	115030442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005156.5	-1	validated	p.V108I	1.000	243	0%	166	45.8%	11	45.4%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SNX30	401548	genome.wustl.edu	37	9	115580096	115580096	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012994.1	+1	validated	e3+1	1.000	436	0%	143	41.3%	0	-	-	-	-	-
ZFP37	7539	genome.wustl.edu	37	9	115805792	115805792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003408.1	-1	provisional	p.R369I	1.000	99	0%	51	35.3%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP37	7539	genome.wustl.edu	37	9	115806167	115806167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003408.1	-1	provisional	p.K244T	0.995	507	0%	192	25.5%	6	16.6%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
SLC31A1	1317	genome.wustl.edu	37	9	116021003	116021003	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001859.3	+1	validated	p.L78V	1.000	236	0%	154	42.2%	37	37.8%	benign(0.01)	tolerated(0.07)	neutral(0.320)	HMMPfam_Ctr
AKNA	80709	genome.wustl.edu	37	9	117120424	117120424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030767.4	-1	validated	p.S839Y	0.001	84	0%	21	38.1%	5	0%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
ATP6V1G1	9550	genome.wustl.edu	37	9	117354914	117354914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004888.3	+1	reviewed	p.F55L	1.000	233	0%	152	13.2%	330	9%	benign(0.197)	deleterious(0)	neutral(0.463)	HMMPfam_V-ATPase_G
TNC	3371	genome.wustl.edu	37	9	117804572	117804572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002160.2	-1	validated	p.S1725L	0.758	187	0.5%	51	47.1%	120	53.3%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117808756	117808756	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002160.2	-1	validated	p.Y1686	0.971	240	0%	81	44.4%	65	43%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117808957	117808957	+	Silent	SNP	G	G	A	rs61738265		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002160.2	-1	validated	p.A1619	0.077	58	0%	35	48.6%	68	33.8%	-	-	-	superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117849088	117849088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002160.2	-1	validated	p.E308K	0.694	115	0%	31	25.8%	68	44.1%	possibly_damaging(0.617)	tolerated(0.13)	neutral(0.467)	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2
PAPPA	5069	genome.wustl.edu	37	9	119097286	119097286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002581.3	+1	reviewed	p.D1182N	1.000	102	0%	18	38.9%	0	-	possibly_damaging(0.667)	tolerated(0.65)	neutral(0.239)	superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119115117	119115117	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002581.3	+1	reviewed	p.K1366T	1.000	150	0%	31	51.6%	0	-	possibly_damaging(0.926)	tolerated(0.08)	deleterious(0.674)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119116043	119116043	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002581.3	+1	reviewed	p.I1440V	1.000	475	0%	81	43.2%	0	-	benign(0.139)	tolerated(0.69)	neutral(0.014)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486
TRIM32	22954	genome.wustl.edu	37	9	119460636	119460636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099679.1	+1	reviewed	p.F205L	1.000	178	0%	38	42.1%	16	50%	benign(0.016)	tolerated(1)	neutral(0.001)	NULL
TLR4	7099	genome.wustl.edu	37	9	120474897	120474897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138554.3	+1	reviewed	p.S164Y	0.927	101	0%	34	52.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
TLR4	7099	genome.wustl.edu	37	9	120475038	120475038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138554.3	+1	reviewed	p.S211Y	0.997	49	0%	21	52.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,superfamily_L domain-like
TLR4	7099	genome.wustl.edu	37	9	120475111	120475111	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138554.3	+1	reviewed	p.N235	0.284	47	0%	21	47.6%	0	-	-	-	-	superfamily_L domain-like
TLR4	7099	genome.wustl.edu	37	9	120475461	120475461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138554.3	+1	reviewed	p.S352Y	0.883	46	0%	17	35.3%	0	-	benign(0.429)	tolerated(0.14)	neutral(0.389)	superfamily_L domain-like
TLR4	7099	genome.wustl.edu	37	9	120476051	120476051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138554.3	+1	reviewed	p.L549I	0.002	188	0%	54	13%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_L domain-like
DBC1	1620	genome.wustl.edu	37	9	121971125	121971125	+	Missense_Mutation	SNP	C	C	A	rs12378280		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014618.2	-1	validated	p.Q339H	1.000	346	0%	54	48.1%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
DBC1	1620	genome.wustl.edu	37	9	121976204	121976204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014618.2	-1	validated	p.E305D	1.000	99	0%	29	34.5%	0	-	possibly_damaging(0.892)	deleterious(0.02)	deleterious(0.734)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123202047	123202047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018249.4	-1	reviewed	p.D1118Y	0.965	582	0%	150	42%	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123205992	123205992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018249.4	-1	reviewed	p.Q1018H	0.921	714	0.1%	147	44.9%	10	40%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123232496	123232496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018249.4	-1	reviewed	p.E621*	1.000	57	0%	48	45.8%	4	0%	-	-	-	NULL
PHF19	26147	genome.wustl.edu	37	9	123624219	123624219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015651.1	-1	validated	p.L399V	1.000	178	0%	259	49%	4	25%	possibly_damaging(0.892)	tolerated(0.15)	deleterious(0.593)	NULL
C5	727	genome.wustl.edu	37	9	123797098	123797098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001735.2	-1	reviewed	p.K189N	1.000	149	0%	63	42.9%	1	100%	probably_damaging(0.972)	tolerated(0.69)	neutral(0.416)	HMMPfam_A2M_N
CNTRL	11064	genome.wustl.edu	37	9	123904441	123904441	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007018.4	+1	reviewed	p.N922H	1.000	101	0%	60	51.7%	9	66.6%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
DAB2IP	153090	genome.wustl.edu	37	9	124521214	124521214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032552.2	+1	validated	p.R157Q	1.000	132	0%	76	46.1%	24	54.1%	possibly_damaging(0.687)	tolerated(0.13)	deleterious(0.498)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TTLL11	158135	genome.wustl.edu	37	9	124736405	124736405	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001139442.1	-1	validated	e6-2	1.000	120	0%	124	37.9%	0	-	-	-	-	-
TTLL11	158135	genome.wustl.edu	37	9	124751698	124751698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001139442.1	-1	validated	p.I439V	0.988	169	0%	87	50.6%	4	0%	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
OR1J4	26219	genome.wustl.edu	37	9	125281734	125281734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004452.1	+1	provisional	p.I105M	0.000	441	0.2%	149	42.3%	0	-	benign(0.429)	tolerated(0.39)	neutral(0.156)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L1	26737	genome.wustl.edu	37	9	125423907	125423907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005236.3	+1	validated	p.K21N	0.096	155	0.6%	94	34%	0	-	possibly_damaging(0.45)	-	-	NULL
OR1L1	26737	genome.wustl.edu	37	9	125424272	125424272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005236.3	+1	validated	p.S143Y	0.003	580	0.2%	143	42.7%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_7tm_1,superfamily_SSF81321
OR1L3	26735	genome.wustl.edu	37	9	125437633	125437633	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005234.1	+1	provisional	p.T75	0.000	747	0.3%	143	50.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L3	26735	genome.wustl.edu	37	9	125437861	125437861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005234.1	+1	provisional	p.F151L	0.057	567	0%	85	44.7%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L4	254973	genome.wustl.edu	37	9	125486471	125486471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005235.1	+1	provisional	p.S68Y	1.000	718	0%	158	35.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
OR1K1	392392	genome.wustl.edu	37	9	125562438	125562438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080859.1	+1	provisional	p.F13L	0.881	233	0%	45	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
RC3H2	54542	genome.wustl.edu	37	9	125621000	125621000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100588.1	-1	validated	p.S744L	1.000	58	0%	59	42.4%	8	62.5%	benign(0.006)	tolerated(0.15)	neutral(0.241)	NULL
RC3H2	54542	genome.wustl.edu	37	9	125652724	125652724	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100588.1	-1	validated	p.R150	1.000	158	0%	79	45.6%	21	47.6%	-	-	-	NULL
ZBTB6	10773	genome.wustl.edu	37	9	125673961	125673961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006626.4	-1	provisional	p.L131I	0.991	74	1.4%	71	39.4%	3	66.6%	benign(0.011)	tolerated(0.57)	neutral(0.007)	NULL
ZBTB26	57684	genome.wustl.edu	37	9	125681600	125681600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020924.2	-1	provisional	p.S205Y	1.000	208	0%	152	38.8%	4	50%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
GPR21	2844	genome.wustl.edu	37	9	125797612	125797612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005294.1	+1	provisional	p.R256Q	1.000	70	0%	30	53.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
STRBP	55342	genome.wustl.edu	37	9	125898412	125898412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018387.4	-1	validated	p.V561L	1.000	224	0%	106	36.8%	124	49.1%	unknown(0)	deleterious(0)	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
NR6A1	2649	genome.wustl.edu	37	9	127302448	127302448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033334.2	-1	reviewed	p.E154K	1.000	385	0%	96	36.5%	0	-	probably_damaging(0.954)	tolerated(0.48)	neutral(0.408)	superfamily_Nuclear receptor ligand-binding domain
GOLGA1	2800	genome.wustl.edu	37	9	127644207	127644207	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002077.3	-1	reviewed	p.F664	1.000	300	0%	146	43.8%	11	36.3%	-	-	-	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127685443	127685443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002077.3	-1	reviewed	p.F164L	1.000	249	0%	207	43.5%	7	42.8%	possibly_damaging(0.872)	deleterious(0.04)	deleterious(0.688)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128069973	128069973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015635.2	+1	validated	p.N419H	1.000	138	0%	145	44.8%	11	54.5%	benign(0.011)	tolerated(0.12)	neutral(0.261)	superfamily_Rho_GAP
GAPVD1	26130	genome.wustl.edu	37	9	128112574	128112574	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015635.2	+1	validated	p.R1127	1.000	80	0%	64	48.4%	20	65%	-	-	-	NULL
FAM125B	89853	genome.wustl.edu	37	9	129154354	129154354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033446.1	+1	validated	p.A140D	1.000	105	0%	116	37.1%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2464
GARNL3	84253	genome.wustl.edu	37	9	130098501	130098501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032293.4	+1	validated	p.R323H	1.000	167	0%	64	40.6%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
ZNF79	7633	genome.wustl.edu	37	9	130207254	130207254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007135.2	+1	validated	p.F425L	0.479	137	0%	93	40.9%	3	0%	benign(0.076)	deleterious(0.01)	neutral(0.411)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LRSAM1	90678	genome.wustl.edu	37	9	130224572	130224572	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005373.1	+1	validated	p.R150*	0.982	45	0%	69	44.9%	5	20%	-	-	-	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
C9orf117	286207	genome.wustl.edu	37	9	130471896	130471896	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012502.2	+1	predicted	p.F119	0.969	29	0%	37	54.1%	10	70%	-	-	-	NULL
CIZ1	25792	genome.wustl.edu	37	9	130931358	130931358	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001131016.1	-1	validated	p.I756	0.005	301	0%	302	39.1%	221	47.9%	-	-	-	NULL
CIZ1	25792	genome.wustl.edu	37	9	130931406	130931406	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001131016.1	-1	validated	p.F740	0.996	275	0%	303	46.9%	225	49.7%	-	-	-	NULL
NUP188	23511	genome.wustl.edu	37	9	131765201	131765201	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015354.1	+1	validated	p.F1415V	1.000	149	0%	59	37.3%	78	47.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ASB6	140459	genome.wustl.edu	37	9	132400454	132400454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017873.2	-1	reviewed	p.A294V	0.109	65	0%	60	50%	26	30.7%	benign(0.086)	deleterious(0.03)	neutral(0.371)	NULL
TOR1B	27348	genome.wustl.edu	37	9	132566357	132566357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014506.1	+1	provisional	p.K69E	0.019	38	0%	80	47.5%	3	33.3%	benign(0.002)	tolerated(0.98)	-	HMMPfam_Torsin,superfamily_SSF52540
FNBP1	23048	genome.wustl.edu	37	9	132740855	132740855	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000449089	-1	known	p.T40M	0.368	178	0%	79	48.1%	31	41.9%	-	-	-	HMMPfam_FCH
NUP214	8021	genome.wustl.edu	37	9	134034776	134034776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005085.2	+1	reviewed	p.R815W	1.000	98	0%	102	50%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUP214	8021	genome.wustl.edu	37	9	134073002	134073002	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005085.2	+1	reviewed	p.F1374C	0.852	124	0%	120	47.5%	16	50%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134350019	134350019	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013318.3	+1	validated	p.E835*	1.000	53	0%	107	42.1%	21	14.2%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135150654	135150654	+	Silent	SNP	G	G	A	rs141497098	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015046.5	-1	reviewed	p.F2363	1.000	367	0.5%	374	38.5%	18	44.4%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SETX	23064	genome.wustl.edu	37	9	135153489	135153489	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015046.5	-1	reviewed	p.N2270K	0.090	143	0%	63	50.8%	10	30%	benign(0.03)	tolerated(0.4)	neutral(0.018)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SETX	23064	genome.wustl.edu	37	9	135176146	135176146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015046.5	-1	reviewed	p.E1807K	1.000	257	0%	334	47.9%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETX	23064	genome.wustl.edu	37	9	135204045	135204045	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015046.5	-1	reviewed	p.S980	0.047	281	0%	163	40.5%	7	28.5%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135206688	135206688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015046.5	-1	reviewed	p.R329Q	0.395	355	0%	130	45.4%	4	50%	benign(0)	tolerated(1)	-	NULL
TTF1	7270	genome.wustl.edu	37	9	135277767	135277767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007344.2	-1	validated	p.L148I	0.000	99	0%	140	50%	10	30%	benign(0.35)	tolerated(0.96)	neutral(0.111)	NULL
DDX31	64794	genome.wustl.edu	37	9	135537701	135537701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022779.7	-1	reviewed	p.E224*	1.000	176	0%	152	48.7%	4	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
GTF3C4	9329	genome.wustl.edu	37	9	135564319	135564319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012204.2	+1	validated	p.S819Y	1.000	149	0%	84	38.1%	16	25%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
AK8	158067	genome.wustl.edu	37	9	135601087	135601087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152572.2	-1	validated	p.K476N	0.019	131	0%	62	38.7%	3	0%	benign(0.054)	deleterious(0.02)	neutral(0.387)	NULL
AK8	158067	genome.wustl.edu	37	9	135702440	135702440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152572.2	-1	validated	p.E186D	1.000	148	0%	61	29.5%	1	0%	benign(0.007)	tolerated(0.75)	neutral(0.002)	"superfamily_Microbial and mitochondrial ADK insert ""zinc finger"" domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"
TSC1	7248	genome.wustl.edu	37	9	135771908	135771908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000368.4	-1	reviewed	p.A1070V	0.758	69	0%	53	37.7%	5	40%	benign(0.001)	tolerated(0.97)	-	NULL
TSC1	7248	genome.wustl.edu	37	9	135778016	135778016	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000368.4	-1	reviewed	p.F789	1.000	230	0%	138	39.9%	4	50%	-	-	-	NULL
TSC1	7248	genome.wustl.edu	37	9	135797259	135797259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000368.4	-1	reviewed	p.R204C	1.000	113	0%	77	45.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hamartin
SURF6	6838	genome.wustl.edu	37	9	136199514	136199514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006753.4	-1	reviewed	p.R159Q	0.967	18	0%	19	42.1%	55	40%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_SURF6
SURF6	6838	genome.wustl.edu	37	9	136202907	136202907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006753.4	-1	reviewed	p.H21Q	0.952	20	0.000	9	0.556	23	56.5%	benign(0)	tolerated(1)	-	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136310114	136310114	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139025.3	+1	reviewed	p.E851*	0.001	13	0%	15	26.7%	0	-	-	-	-	NULL
DBH	1621	genome.wustl.edu	37	9	136501768	136501768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000787.3	+1	reviewed	p.R92H	0.997	33	0%	19	42.1%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMSmart_DoH,HMMPfam_DOMON
SARDH	1757	genome.wustl.edu	37	9	136532010	136532010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371868	-1	known	p.F276L	0.000	21	0%	20	65%	0	-	possibly_damaging(0.767)	tolerated(0.83)	neutral(0.285)	superfamily_SSF101790
BRD3	8019	genome.wustl.edu	37	9	136901247	136901247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007371.3	-1	reviewed	p.E615*	1.000	71	0%	169	38.5%	21	4.7%	-	-	-	NULL
COL5A1	1289	genome.wustl.edu	37	9	137619235	137619235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000093.3	+1	reviewed	p.D260Y	1.000	89	0%	60	46.7%	6	0%	unknown(0)	tolerated(0.06)	-	NULL
FCN1	2219	genome.wustl.edu	37	9	137801822	137801822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002003.3	-1	reviewed	p.S268L	0.000	174	0%	176	39.8%	1	0%	benign(0.33)	tolerated(0.22)	neutral(0.145)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FCN1	2219	genome.wustl.edu	37	9	137801885	137801885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002003.3	-1	reviewed	p.S247Y	0.975	129	0%	130	46.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FCN1	2219	genome.wustl.edu	37	9	137809682	137809682	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002003.3	-1	reviewed	p.L12	0.000	41	0%	25	44%	2	0%	-	-	-	NULL
LCN9	392399	genome.wustl.edu	37	9	138557118	138557118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001676.1	+1	provisional	p.S112L	0.004	117	0%	43	37.2%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Lipocalin,superfamily_Lipocalins
KCNT1	57582	genome.wustl.edu	37	9	138641959	138641959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020822.2	+1	validated	p.F90L	1.000	18	0%	42	52.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
KCNT1	57582	genome.wustl.edu	37	9	138649176	138649176	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020822.2	+1	validated	p.I236	1.000	47	0%	24	45.8%	0	-	-	-	-	superfamily_SSF81324
KCNT1	57582	genome.wustl.edu	37	9	138656990	138656990	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020822.2	+1	validated	p.I383	0.998	30	0%	89	40.4%	0	-	-	-	-	superfamily_SSF81324
CAMSAP1	157922	genome.wustl.edu	37	9	138773530	138773530	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015447.3	-1	validated	p.S178	0.007	311	0%	89	38.2%	20	55%	-	-	-	NULL
TRAF2	7186	genome.wustl.edu	37	9	139794123	139794123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021138.3	+1	reviewed	p.S89L	0.996	127	0%	269	45.7%	21	47.6%	possibly_damaging(0.83)	tolerated(0.52)	neutral(0.324)	NULL
PTGDS	5730	genome.wustl.edu	37	9	139873680	139873680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000954.5	+1	reviewed	p.N87S	0.545	14	0%	15	26.7%	117	0%	benign(0.006)	deleterious(0.02)	neutral(0.383)	HMMPfam_Lipocalin,superfamily_Lipocalins
GRIN1	2902	genome.wustl.edu	37	9	140055534	140055534	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007327.3	+1	reviewed	p.F408	1.000	6	0.000	23	0.391	0	-	-	-	-	superfamily_Periplasmic binding protein-like II
PNPLA7	375775	genome.wustl.edu	37	9	140437926	140437926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098537.1	-1	validated	p.S155Y	1.000	16	0%	31	22.6%	0	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
C9orf37	85026	genome.wustl.edu	37	9	140510398	140510398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032937.4	-1	reviewed	p.A85D	0.000	30	0%	81	33.3%	15	46.6%	benign(0.339)	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	140907683	140907683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000718.2	+1	validated	p.A755T	0.954	41	0%	35	51.4%	0	-	probably_damaging(0.965)	tolerated(0.39)	neutral(0.423)	NULL
CACNA1B	774	genome.wustl.edu	37	9	140946594	140946594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000718.2	+1	validated	p.R1254H	1.000	135	0%	46	43.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	140953038	140953038	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000718.2	+1	validated	p.F1442	0.971	84	0%	57	47.4%	0	-	-	-	-	NULL
CACNA1B	774	genome.wustl.edu	37	9	140953577	140953577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000718.2	+1	validated	p.N1507S	1.000	210	0%	97	42.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	140972570	140972570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000718.2	+1	validated	p.A1652T	1.000	141	0%	64	46.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LARP4B	23185	genome.wustl.edu	37	10	875384	875384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015155.1	-1	provisional	p.Y356H	1.000	33	0%	62	35.5%	32	56.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GTPBP4	23560	genome.wustl.edu	37	10	1058589	1058589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012341.2	+1	reviewed	p.R510Q	0.989	57	0%	102	51%	76	43.4%	possibly_damaging(0.94)	deleterious(0.02)	deleterious(0.768)	NULL
IDI2-AS1	55853	genome.wustl.edu	37	10	1089812	1089812	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_024628.1	+1	validated	NULL	0.000	79	0%	109	90.8%	0	-	-	-	-	-
AKR1C1	1645	genome.wustl.edu	37	10	5008137	5008137	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001353.5	+1	reviewed	p.K39T	0.960	149	0%	130	43.1%	7	100%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
AKR1C4	1109	genome.wustl.edu	37	10	5238891	5238891	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001818.2	+1	reviewed	p.F21V	1.000	299	0%	71	36.6%	0	-	possibly_damaging(0.623)	deleterious(0)	deleterious(0.661)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
AKR1C4	1109	genome.wustl.edu	37	10	5254979	5254979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001818.2	+1	reviewed	p.L235I	0.696	97	0%	41	61%	0	-	possibly_damaging(0.446)	tolerated(0.1)	neutral(0.432)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
FAM208B	54906	genome.wustl.edu	37	10	5791181	5791181	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017782.4	+1	validated	p.E1933*	0.065	48	0%	37	35.1%	25	48%	-	-	-	NULL
ANKRD16	54522	genome.wustl.edu	37	10	5922267	5922267	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009941.2	-1	validated	p.R308*	1.000	91	0%	199	39.2%	7	42.8%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FBXO18	84893	genome.wustl.edu	37	10	5957433	5957433	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032807.3	+1	reviewed	p.V539	1.000	51	0%	24	33.3%	64	32.8%	-	-	-	superfamily_SSF52540
PFKFB3	5209	genome.wustl.edu	37	10	6261579	6261579	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004566.3	+1	validated	p.E182	0.978	48	0%	65	43.1%	59	45.7%	unknown(0)	deleterious(0)	-	HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRKCQ	5588	genome.wustl.edu	37	10	6539184	6539184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006257.2	-1	reviewed	p.R191Q	1.000	160	0%	82	54.9%	4	25%	benign(0.001)	tolerated(0.78)	neutral(0.001)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
PRKCQ	5588	genome.wustl.edu	37	10	6556987	6556987	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006257.2	-1	reviewed	p.V37	0.827	122	0%	25	44%	1	100%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ITIH5	80760	genome.wustl.edu	37	10	7684053	7684053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030569.5	-1	validated	p.K46E	1.000	247	0%	84	42.9%	2	0%	benign(0.012)	tolerated(1)	neutral(0.001)	HMMSmart_SM00609
ITIH2	3698	genome.wustl.edu	37	10	7768994	7768994	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002216.2	+1	validated	p.R356*	0.915	343	0%	124	38.7%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ITIH2	3698	genome.wustl.edu	37	10	7786854	7786854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002216.2	+1	validated	p.V837I	0.002	205	0%	206	52.4%	1	0%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_ITI_HC_C
KIN	22944	genome.wustl.edu	37	10	7801886	7801886	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012311.2	-1	reviewed	p.E362	1.000	146	0%	195	49.2%	22	50%	-	-	-	NULL
ATP5C1	509	genome.wustl.edu	37	10	7839117	7839117	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001973.1	+1	reviewed	p.R67*	0.979	150	0%	106	45.3%	154	2.5%	-	-	-	HMMPfam_ATP-synt,superfamily_ATP synthase (F1-ATPase) gamma subunit
TAF3	83860	genome.wustl.edu	37	10	8006695	8006695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031923.2	+1	provisional	p.E408K	0.992	72	0%	31	29%	5	40%	possibly_damaging(0.832)	tolerated(0.36)	neutral(0.337)	NULL
GATA3	2625	genome.wustl.edu	37	10	8111487	8111487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002295.1	+1	reviewed	p.T326A	0.998	93	0%	43	41.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
CELF2	10659	genome.wustl.edu	37	10	11308591	11308591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006561.3	+1	reviewed	p.A190V	1.000	412	0%	162	57.4%	9	66.6%	benign(0.402)	deleterious(0.04)	deleterious(0.478)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
UPF2	26019	genome.wustl.edu	37	10	12009405	12009405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015542.2	-1	reviewed	p.R668C	0.999	139	0%	260	43.5%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
UPF2	26019	genome.wustl.edu	37	10	12043816	12043816	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015542.2	-1	reviewed	p.E505*	1.000	241	0%	227	41.9%	7	28.5%	-	-	-	NULL
MCM10	55388	genome.wustl.edu	37	10	13228178	13228178	+	Silent	SNP	C	C	T	rs61755071	byCluster;byFrequency	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182751.2	+1	validated	p.I372	0.999	358	0%	164	44.5%	10	50%	-	-	-	NULL
MCM10	55388	genome.wustl.edu	37	10	13237129	13237129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182751.2	+1	validated	p.E613K	0.849	157	0%	59	44.1%	14	57.1%	benign(0.01)	tolerated(0.24)	neutral(0.038)	HMMPfam_Mcm10
BEND7	222389	genome.wustl.edu	37	10	13538805	13538805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152751.2	-1	validated	p.E126K	1.000	114	0%	117	16.2%	8	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM107B	83641	genome.wustl.edu	37	10	14563968	14563968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031453.2	-1	predicted	p.R235I	1.000	837	0%	509	42.4%	68	36.7%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	HMMPfam_DUF1151
OLAH	55301	genome.wustl.edu	37	10	15115180	15115180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018324.2	+1	validated	p.K303N	0.209	141	0%	177	43.5%	0	-	possibly_damaging(0.898)	tolerated(0.48)	neutral(0.365)	HMMPfam_Thioesterase,superfamily_SSF53474
ITGA8	8516	genome.wustl.edu	37	10	15600156	15600156	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003638.1	-1	provisional	p.R895*	0.010	65	0%	44	50%	1	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGA8	8516	genome.wustl.edu	37	10	15639207	15639207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003638.1	-1	provisional	p.N737S	1.000	171	0%	51	49%	0	-	probably_damaging(0.991)	tolerated(0.91)	neutral(0.444)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGA8	8516	genome.wustl.edu	37	10	15730005	15730005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003638.1	-1	provisional	p.E126K	1.000	225	0%	108	43.5%	0	-	possibly_damaging(0.822)	tolerated(0.39)	neutral(0.327)	superfamily_SSF69318
FAM188A	80013	genome.wustl.edu	37	10	15883543	15883543	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024948.2	-1	validated	p.A97	1.000	245	0%	54	46.3%	21	52.3%	-	-	-	NULL
CUBN	8029	genome.wustl.edu	37	10	16883020	16883020	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081.3	-1	reviewed	p.A3230	0.927	350	0%	92	45.7%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16948330	16948330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081.3	-1	reviewed	p.R2595I	0.996	201	0%	121	33.1%	0	-	possibly_damaging(0.931)	tolerated(0.07)	deleterious(0.697)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17113893	17113893	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081.3	-1	reviewed	p.S793	0.000	113	0%	58	39.7%	1	0%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17142157	17142157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081.3	-1	reviewed	p.D538Y	0.994	119	0%	76	39.5%	0	-	probably_damaging(0.974)	deleterious(0.05)	deleterious(0.761)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRDMT1	1787	genome.wustl.edu	37	10	17191129	17191129	+	Missense_Mutation	SNP	C	C	A	rs144121793	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004412.5	-1	reviewed	p.E362D	0.999	105	0%	45	51.1%	4	0%	benign(0.109)	tolerated(0.31)	neutral(0.036)	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TRDMT1	1787	genome.wustl.edu	37	10	17210904	17210904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004412.5	-1	reviewed	p.E63K	0.819	204	0%	75	49.3%	3	0%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PTPLA	9200	genome.wustl.edu	37	10	17636356	17636356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014241.3	-1	reviewed	p.P211H	1.000	48	0%	56	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PTPLA
PTPLA	9200	genome.wustl.edu	37	10	17645635	17645635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014241.3	-1	reviewed	p.T136I	1.000	68	0%	137	40.9%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_PTPLA
STAM	8027	genome.wustl.edu	37	10	17726863	17726863	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003473.2	+1	reviewed	p.K78N	1.000	369	0%	276	46.4%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288
MRC1	4360	genome.wustl.edu	37	10	17887340	17887340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009567.1	+1	reviewed	p.K323T	1.000	322	0%	163	38.7%	0	-	benign(0.16)	tolerated(0.9)	neutral(0.015)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
SLC39A12	221074	genome.wustl.edu	37	10	18242119	18242119	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145195.1	+1	validated	e1-1	0.955	73	0%	44	47.7%	0	-	-	-	-	-
SLC39A12	221074	genome.wustl.edu	37	10	18250670	18250670	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145195.1	+1	validated	p.K141T	0.000	231	0%	96	36.5%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
CACNB2	783	genome.wustl.edu	37	10	18789740	18789740	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201596.2	+1	reviewed	e5-1	1.000	76	0%	35	48.6%	1	100%	-	-	-	-
NSUN6	221078	genome.wustl.edu	37	10	18885149	18885149	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182543.2	-1	validated	p.L255	0.272	368	0%	147	44.2%	5	40%	-	-	-	HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
NSUN6	221078	genome.wustl.edu	37	10	18940115	18940115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182543.2	-1	validated	p.K6N	0.994	151	0.7%	190	41.1%	9	66.6%	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
PLXDC2	84898	genome.wustl.edu	37	10	20508016	20508016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032812.7	+1	provisional	p.L433I	1.000	267	0%	89	32.6%	5	0%	probably_damaging(0.991)	tolerated(0.27)	deleterious(0.478)	NULL
NEBL	10529	genome.wustl.edu	37	10	21112217	21112217	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006393.2	-1	reviewed	p.E628*	1.000	162	0%	92	38%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEBL	10529	genome.wustl.edu	37	10	21120221	21120221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006393.2	-1	reviewed	p.K525N	0.994	350	0%	96	12.5%	0	-	benign(0.247)	tolerated(0.16)	neutral(0.084)	HMMPfam_Nebulin,HMMSmart_SM00227
NEBL	10529	genome.wustl.edu	37	10	21139419	21139419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006393.2	-1	reviewed	p.E341*	1.000	183	0%	109	44%	1	100%	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEBL	10529	genome.wustl.edu	37	10	21169800	21169800	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006393.2	-1	reviewed	p.G135*	1.000	164	0%	81	34.6%	0	-	-	-	-	HMMPfam_Nebulin
C10orf140	387640	genome.wustl.edu	37	10	21804419	21804419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207371.3	-1	validated	p.R778I	1.000	84	0%	286	49.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MLLT10	8028	genome.wustl.edu	37	10	22024148	22024148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004641.2	+1	validated	p.S996Y	1.000	277	0%	169	46.7%	8	50%	benign(0.091)	deleterious(0)	neutral(0.451)	NULL
COMMD3	23412	genome.wustl.edu	37	10	22607917	22607917	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000376776	+1	known	p.L127*	1.000	54	0%	506	45.5%	255	64.3%	-	-	-	HMMPfam_HCaRG
ARMC3	219681	genome.wustl.edu	37	10	23321905	23321905	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173081.3	+1	validated	p.G788*	1.000	260	0.4%	63	44.4%	2	0%	-	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24762299	24762299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019590.3	+1	validated	p.I330T	1.000	89	0%	51	49%	27	48.1%	possibly_damaging(0.762)	deleterious(0.02)	deleterious(0.665)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832924	24832924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019590.3	+1	validated	p.F1575L	1.000	179	0%	60	35%	67	49.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24873608	24873608	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020824.3	-1	validated	p.I1870	0.000	323	0%	70	37.1%	70	54.2%	-	-	-	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24909791	24909791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020824.3	-1	validated	p.L345V	0.001	430	0%	125	44.8%	5	20%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25312581	25312581	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024838.4	+1	validated	p.W143*	1.000	118	0%	77	18.2%	8	25%	-	-	-	HMMPfam_SKI,superfamily_P-loop containing nucleoside triphosphate hydrolases
THNSL1	79896	genome.wustl.edu	37	10	25313208	25313208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024838.4	+1	validated	p.D352E	0.999	147	0%	108	59.3%	6	16.6%	possibly_damaging(0.676)	deleterious(0)	deleterious(0.685)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25465117	25465117	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020752.2	+1	validated	p.L256	0.000	10	0%	20	45%	0	-	-	-	-	NULL
GPR158	57512	genome.wustl.edu	37	10	25887409	25887409	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020752.2	+1	validated	p.E952*	0.997	50	0%	23	34.8%	0	-	-	-	-	NULL
GPR158	57512	genome.wustl.edu	37	10	25887683	25887683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020752.2	+1	validated	p.S1043Y	0.009	109	0%	32	46.9%	0	-	benign(0.003)	tolerated(0.4)	neutral(0.016)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26243932	26243932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017433.4	+1	reviewed	p.L100I	1.000	301	0%	38	52.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MYO3A	53904	genome.wustl.edu	37	10	26315378	26315378	+	Silent	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017433.4	+1	reviewed	p.I290	0.199	143	0%	47	48.9%	0	-	-	-	-	superfamily_Kinase_like,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26462946	26462946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017433.4	+1	reviewed	p.E1251D	0.033	117	0%	79	36.7%	0	-	possibly_damaging(0.69)	deleterious(0.03)	deleterious(0.611)	superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26463180	26463180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017433.4	+1	reviewed	p.E1329D	0.000	194	0%	79	30.4%	0	-	benign(0.032)	tolerated(0.56)	neutral(0.008)	superfamily_SSF52540
GAD2	2572	genome.wustl.edu	37	10	26581452	26581452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000818.2	+1	reviewed	p.Y482C	1.000	222	0%	63	42.9%	0	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
ABI1	10006	genome.wustl.edu	37	10	27040684	27040684	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005470.3	-1	validated	p.P398	0.985	336	0%	134	51.5%	38	42.1%	-	-	-	superfamily_SH3-domain
ANKRD26	22852	genome.wustl.edu	37	10	27324294	27324294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014915.2	-1	validated	p.E1029*	0.973	440	0%	225	40.9%	2	50%	-	-	-	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27324599	27324599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014915.2	-1	validated	p.E927A	1.000	207	0%	213	39%	5	60%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27328955	27328955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014915.2	-1	validated	p.E772*	0.799	350	0%	353	42.5%	3	33.3%	-	-	-	NULL
YME1L1	10730	genome.wustl.edu	37	10	27400958	27400958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139312.1	-1	reviewed	p.D757G	1.000	580	0%	313	41.9%	110	83.6%	benign(0.206)	deleterious(0.03)	neutral(0.385)	HMMPfam_Peptidase_M41
YME1L1	10730	genome.wustl.edu	37	10	27409412	27409412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139312.1	-1	reviewed	p.R512*	1.000	289	0%	105	41%	56	12.5%	-	-	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACBD5	91452	genome.wustl.edu	37	10	27494176	27494176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145698.3	-1	validated	p.A469E	1.000	130	0%	253	42.7%	23	78.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACBD5	91452	genome.wustl.edu	37	10	27507113	27507113	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145698.3	-1	validated	e7-1	0.959	179	0%	142	44.4%	0	-	-	-	-	-
LOC729549	729549	genome.wustl.edu	37	10	27627834	27627834	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001130590.2	-1	model	p.T133	0.000	22	0%	45	26.7%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ARMC4	55130	genome.wustl.edu	37	10	28283880	28283880	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018076.2	-1	validated	p.A64	0.000	173	0%	107	43.9%	2	50%	-	-	-	NULL
SVIL	6840	genome.wustl.edu	37	10	29782171	29782171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021738.2	-1	reviewed	p.D1331N	1.000	145	0%	131	45.8%	19	52.6%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
KIAA1462	57608	genome.wustl.edu	37	10	30318371	30318371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020848.2	-1	validated	p.L236I	1.000	248	0%	199	51.8%	4	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
MTPAP	55149	genome.wustl.edu	37	10	30602794	30602794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018109.3	-1	validated	p.F498C	1.000	128	0%	160	48.1%	26	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PAP/OAS1 substrate-binding domain
MTPAP	55149	genome.wustl.edu	37	10	30630538	30630538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018109.3	-1	validated	p.F63L	0.938	230	0%	149	49.7%	24	41.6%	benign(0.094)	tolerated(0.27)	neutral(0.041)	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30727958	30727958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005204.2	+1	reviewed	p.E31K	1.000	55	0%	64	31.2%	22	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF438	220929	genome.wustl.edu	37	10	31133935	31133935	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143766.1	-1	validated	p.V814	0.025	76	0%	59	39%	3	33.3%	-	-	-	NULL
ZNF438	220929	genome.wustl.edu	37	10	31139056	31139056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143766.1	-1	validated	p.S93Y	1.000	263	0%	174	42.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF5B	3799	genome.wustl.edu	37	10	32307465	32307465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004521.2	-1	validated	p.A778T	1.000	286	0%	432	42.4%	169	40.2%	benign(0.353)	tolerated(0.08)	neutral(0.411)	NULL
C10orf68	79741	genome.wustl.edu	37	10	32873208	32873208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024688.2	+1	validated	p.Y7D	0.049	175	0%	185	42.2%	0	-	benign(0.212)	tolerated(0.23)	neutral(0.062)	NULL
C10orf68	79741	genome.wustl.edu	37	10	32978083	32978083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024688.2	+1	validated	p.R86K	0.000	65	0%	71	45.1%	0	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
NRP1	8829	genome.wustl.edu	37	10	33474632	33474632	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003873.5	-1	validated	p.I785	0.972	276	0%	132	37.1%	11	9%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
CUL2	8453	genome.wustl.edu	37	10	35327866	35327866	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003591.2	-1	provisional	p.R287*	1.000	262	0%	317	43.5%	11	0%	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
CUL2	8453	genome.wustl.edu	37	10	35333532	35333532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003591.2	-1	provisional	p.L226V	1.000	117	0%	152	32.9%	7	85.7%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Cullin,superfamily_Cullin repeat
CREM	1390	genome.wustl.edu	37	10	35467899	35467899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181571.1	+1	reviewed	p.R84Q	1.000	102	0%	124	41.9%	14	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_pKID
NAMPTL	646309	genome.wustl.edu	37	10	36812907	36812907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000440465	-1	known	p.L86I	1.000	292	0%	448	42.2%	0	-	benign(0.145)	tolerated(0.15)	neutral(0.254)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37425564	37425564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052997.2	+1	validated	p.R206Q	0.000	39	0%	61	36.1%	0	-	benign(0.293)	deleterious(0.05)	neutral(0.436)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD30A	91074	genome.wustl.edu	37	10	37454050	37454050	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052997.2	+1	validated	p.Q621H	0.000	199	0%	344	42.7%	0	-	benign(0.253)	deleterious(0)	deleterious(0.471)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37478464	37478464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052997.2	+1	validated	p.K775Q	0.001	75	0%	120	17.5%	0	-	possibly_damaging(0.45)	tolerated(0.49)	neutral(0.158)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37505267	37505267	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052997.2	+1	validated	p.K954Q	0.302	110	0%	23	47.8%	0	-	possibly_damaging(0.45)	deleterious(0)	deleterious(0.592)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37505305	37505305	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052997.2	+1	validated	p.Q966H	0.022	102	0%	20	50%	0	-	benign(0.253)	tolerated(0.16)	neutral(0.085)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37506774	37506774	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052997.2	+1	validated	p.E1023*	0.012	66	0%	19	31.6%	0	-	-	-	-	NULL
LOC646360	646360	genome.wustl.edu	37	10	37626786	37626786	+	RNA	SNP	G	G	A	rs144068387	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_078419.1	+1	model	NULL	1.000	146	0.7%	127	48.8%	0	-	-	-	-	-
ZNF33A	7581	genome.wustl.edu	37	10	38343768	38343768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006954.1	+1	validated	p.R239K	0.000	129	0%	52	40.4%	19	42.1%	possibly_damaging(0.601)	tolerated(0.73)	neutral(0.209)	NULL
LOC340947	340947	genome.wustl.edu	37	10	38369445	38369445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001131609.2	-1	model	p.L164F	1.000	77	0%	44	43.2%	0	-	-	-	-	HMMPfam_Paf67
ZNF37A	7587	genome.wustl.edu	37	10	38406317	38406317	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007094.2	+1	validated	e4-1	0.998	32	0%	30	50%	0	-	-	-	-	-
ZNF33B	7582	genome.wustl.edu	37	10	43089016	43089016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006955.1	-1	provisional	p.R461I	1.000	181	0%	80	48.7%	12	41.6%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RET	5979	genome.wustl.edu	37	10	43612056	43612056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020975.4	+1	reviewed	p.R721W	1.000	93	0%	194	40.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
RASGEF1A	221002	genome.wustl.edu	37	10	43691959	43691959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145313.2	-1	validated	p.E462D	0.997	103	0%	89	53.9%	0	-	benign(0.033)	tolerated(0.19)	neutral(0.051)	HMMSmart_SM00147,superfamily_Ras GEF
ZNF485	220992	genome.wustl.edu	37	10	44111783	44111783	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145312.3	+1	validated	p.S98R	0.000	52	0%	78	19.2%	6	33.3%	benign(0.044)	deleterious(0.05)	neutral(0.348)	NULL
ZNF485	220992	genome.wustl.edu	37	10	44112276	44112276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145312.3	+1	validated	p.R262I	0.997	112	0%	193	40.9%	6	66.6%	probably_damaging(0.959)	tolerated(0.09)	deleterious(0.699)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF485	220992	genome.wustl.edu	37	10	44112612	44112612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145312.3	+1	validated	p.R374I	0.999	69	0%	96	42.7%	7	42.8%	benign(0.195)	tolerated(0.05)	neutral(0.364)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ALOX5	240	genome.wustl.edu	37	10	45935921	45935921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000698.2	+1	reviewed	p.S342L	1.000	120	0%	63	49.2%	2	0%	benign(0.129)	deleterious(0)	neutral(0.456)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ZFAND4	93550	genome.wustl.edu	37	10	46121779	46121779	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128324.1	-1	validated	p.E498*	0.998	91	0%	62	40.3%	2	50%	-	-	-	NULL
GDF10	2662	genome.wustl.edu	37	10	48426629	48426629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004962.2	-1	reviewed	p.R460W	1.000	52	0%	47	36.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
FAM25C	644054	genome.wustl.edu	37	10	49205729	49205729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137548.1	-1	validated	p.K40E	0.022	63	0%	60	46.7%	0	-	unknown(0)	deleterious(0)	-	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49409285	49409285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001018071.3	-1	reviewed	p.S647F	0.000	123	0%	36	38.9%	0	-	benign(0.267)	deleterious(0)	deleterious(0.473)	superfamily_PH domain-like
FRMPD2	143162	genome.wustl.edu	37	10	49431308	49431308	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001018071.3	-1	reviewed	p.E392*	1.000	177	0%	21	47.6%	0	-	-	-	-	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
WDFY4	57705	genome.wustl.edu	37	10	49917925	49917925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020945.1	+1	validated	p.K50E	1.000	125	0%	55	43.6%	0	-	benign(0.253)	tolerated(0.11)	neutral(0.298)	NULL
WDFY4	57705	genome.wustl.edu	37	10	49931503	49931503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020945.1	+1	validated	p.S161Y	0.684	118	0%	81	39.5%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
WDFY4	57705	genome.wustl.edu	37	10	49944168	49944168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000360890	+1	known	p.R644Q	0.000	24	0.000	9	0.444	0	-	unknown(0)	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	50028406	50028406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020945.1	+1	validated	p.T1878M	0.000	30	0%	17	52.9%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
WDFY4	57705	genome.wustl.edu	37	10	50081658	50081658	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000312002	+1	known	p.R1379*	0.747	72	0%	23	43.5%	0	-	-	-	-	NULL
VSTM4	196740	genome.wustl.edu	37	10	50255061	50255061	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031746.3	-1	validated	p.P268	0.998	789	0%	153	50.3%	1	0%	-	-	-	NULL
FAM170B	170370	genome.wustl.edu	37	10	50340047	50340047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000311787	-1	known	p.E155K	0.994	80	0%	30	20%	0	-	probably_damaging(0.978)	deleterious(0.05)	deleterious(0.766)	NULL
C10orf71	118461	genome.wustl.edu	37	10	50531154	50531154	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135196.1	+1	validated	p.F188	0.431	77	0%	40	55%	0	-	-	-	-	NULL
C10orf71	118461	genome.wustl.edu	37	10	50531867	50531867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135196.1	+1	validated	p.A426V	0.003	249	0%	131	12.2%	1	0%	benign(0.004)	tolerated(0.92)	-	NULL
ERCC6	2074	genome.wustl.edu	37	10	50678746	50678746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000124.2	-1	reviewed	p.R1087Q	0.000	471	0%	138	43.5%	3	66.6%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
PGBD3	267004	genome.wustl.edu	37	10	50724704	50724704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170753.2	-1	validated	p.E153K	0.096	154	0%	94	44.7%	4	75%	benign(0.003)	tolerated(0.25)	neutral(0.037)	NULL
PARG	8505	genome.wustl.edu	37	10	51065370	51065370	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003631.2	-1	reviewed	p.E779*	1.000	337	0.3%	117	40.2%	4	0%	-	-	-	HMMPfam_PARG_cat
AGAP6	414189	genome.wustl.edu	37	10	51769291	51769291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077665.2	+1	validated	p.S469L	1.000	79	0%	85	28.2%	9	22.2%	benign(0.011)	tolerated(0.2)	neutral(0.050)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
AGAP6	414189	genome.wustl.edu	37	10	51769553	51769553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077665.2	+1	validated	p.E556D	0.971	293	0%	222	33.3%	12	41.6%	benign(0.003)	tolerated(0.26)	neutral(0.034)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,superfamily_Ankyrin repeat
A1CF	29974	genome.wustl.edu	37	10	52570798	52570798	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138932.1	-1	reviewed	e9+2	0.998	129	0%	30	40%	0	-	-	-	-	-
PRKG1	5592	genome.wustl.edu	37	10	54031162	54031162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006258.2	+1	validated	p.K409T	1.000	120	0%	20	65%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MBL2	4153	genome.wustl.edu	37	10	54530432	54530432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000242.2	-1	reviewed	p.P101L	0.000	92	0%	31	54.8%	0	-	benign(0.158)	tolerated(0.54)	neutral(0.021)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55566598	55566598	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142771.1	-1	reviewed	p.S1597*	0.455	357	0%	72	36.1%	0	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55581854	55581854	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142763.1	-1	reviewed	p.E1885*	0.970	351	0%	202	44.1%	0	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55582637	55582637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142763.1	-1	reviewed	p.N1624H	0.001	275	0%	114	41.2%	0	-	benign(0.372)	deleterious(0.04)	neutral(0.467)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55663054	55663054	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142763.1	-1	reviewed	p.I1155	0.999	137	0%	98	32.7%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDH15	65217	genome.wustl.edu	37	10	55721535	55721535	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142763.1	-1	reviewed	p.E1001*	1.000	117	0%	99	40.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAM13C	220965	genome.wustl.edu	37	10	61007451	61007451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143773.1	-1	validated	p.E478*	1.000	320	0.6%	126	34.1%	1	0%	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61832066	61832066	+	Missense_Mutation	SNP	G	G	A	rs78194762		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020987.2	-1	reviewed	p.S2858L	1.000	47	0%	37	48.6%	1	0%	benign(0.372)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61832290	61832290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020987.2	-1	reviewed	p.D2783E	0.106	127	0%	74	47.3%	0	-	benign(0)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61865693	61865693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020987.2	-1	reviewed	p.L1100V	0.999	192	0%	87	47.1%	14	57.1%	probably_damaging(0.983)	tolerated(0.29)	neutral(0.458)	NULL
CDK1	983	genome.wustl.edu	37	10	62544573	62544573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001786.4	+1	reviewed	p.R50W	1.000	113	0%	88	52.3%	113	47.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RHOBTB1	9886	genome.wustl.edu	37	10	62631205	62631205	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_024555.1	-1	reviewed	NULL	0.003	114	0%	71	42.3%	3	0%	-	-	-	-
JMJD1C	221037	genome.wustl.edu	37	10	64973852	64973852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032776.1	-1	validated	p.R692Q	1.000	227	0%	138	45.7%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTNNA3	29119	genome.wustl.edu	37	10	67829209	67829209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127384.1	-1	validated	p.K672N	1.000	281	0%	34	52.9%	1	100%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
LRRTM3	347731	genome.wustl.edu	37	10	68686916	68686916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178011.3	+1	validated	p.F81C	1.000	150	0%	92	17.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
LRRTM3	347731	genome.wustl.edu	37	10	68687573	68687573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178011.3	+1	validated	p.S300Y	1.000	66	0%	56	48.2%	0	-	possibly_damaging(0.637)	deleterious(0.02)	deleterious(0.606)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRRTM3	347731	genome.wustl.edu	37	10	68688050	68688050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178011.3	+1	validated	p.R459Q	1.000	111	0.9%	36	47.2%	0	-	possibly_damaging(0.859)	tolerated(0.75)	neutral(0.334)	NULL
HERC4	26091	genome.wustl.edu	37	10	69716666	69716666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022079.2	-1	validated	p.L673R	1.000	200	0%	166	46.4%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HERC4	26091	genome.wustl.edu	37	10	69793731	69793731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022079.2	-1	validated	p.D226Y	1.000	101	0%	54	38.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
RUFY2	55680	genome.wustl.edu	37	10	70161481	70161481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017987.4	-1	validated	p.F99L	1.000	78	0%	164	40.2%	2	50%	possibly_damaging(0.775)	tolerated(0.76)	neutral(0.289)	HMMPfam_RUN
DNA2	1763	genome.wustl.edu	37	10	70192185	70192185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080449.1	-1	provisional	p.N663H	1.000	96	0%	148	43.2%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TET1	80312	genome.wustl.edu	37	10	70332949	70332949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030625.2	+1	validated	p.S285Y	0.871	44	0%	57	45.6%	0	-	benign(0.256)	deleterious(0.03)	neutral(0.391)	NULL
TET1	80312	genome.wustl.edu	37	10	70360773	70360773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030625.2	+1	validated	p.K650N	1.000	78	0%	256	41.4%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TET1	80312	genome.wustl.edu	37	10	70450571	70450571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030625.2	+1	validated	p.N1804S	0.932	120	0%	98	42.9%	7	42.8%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
STOX1	219736	genome.wustl.edu	37	10	70645557	70645557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130161.2	+1	reviewed	p.L669I	1.000	128	0%	153	39.2%	4	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
DDX50	79009	genome.wustl.edu	37	10	70673159	70673159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024045.1	+1	reviewed	p.R257Q	1.000	356	0%	177	42.9%	34	52.9%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1279	26128	genome.wustl.edu	37	10	70775338	70775338	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015634.3	+1	reviewed	p.L344	0.290	87	0%	123	45.5%	34	52.9%	-	-	-	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72462167	72462167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139155.2	+1	reviewed	p.R208C	1.000	84	0%	30	30%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72511870	72511870	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139155.2	+1	reviewed	p.Y875	0.963	24	0%	10	80%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SLC29A3	55315	genome.wustl.edu	37	10	73082516	73082516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000373189	+1	known	p.A2V	0.992	58	0%	53	49.1%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CHST3	9469	genome.wustl.edu	37	10	73765714	73765714	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004273.4	+1	reviewed	p.I38	0.982	132	0%	296	41.2%	4	50%	-	-	-	NULL
ASCC1	51008	genome.wustl.edu	37	10	73921391	73921391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015947.2	-1	validated	p.K177N	1.000	207	0%	243	42.8%	31	61.2%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
TTC18	118491	genome.wustl.edu	37	10	75038024	75038024	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145170.3	-1	validated	p.E841*	0.842	267	0%	463	52.1%	0	-	-	-	-	superfamily_TPR-like
TTC18	118491	genome.wustl.edu	37	10	75051169	75051169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145170.3	-1	validated	p.R755Q	1.000	483	0%	157	38.9%	0	-	possibly_damaging(0.67)	tolerated(0.58)	neutral(0.242)	HMMSmart_SM00028,superfamily_TPR-like
PPP3CB	5532	genome.wustl.edu	37	10	75198174	75198174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142353.1	-1	validated	p.I468M	1.000	221	0%	83	39.8%	31	48.3%	benign(0.046)	tolerated(0.22)	neutral(0.045)	superfamily_SSF56300
PPP3CB	5532	genome.wustl.edu	37	10	75230678	75230678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142353.1	-1	validated	p.S285L	1.000	119	0.8%	117	18.8%	19	15.7%	possibly_damaging(0.951)	tolerated(0.13)	deleterious(0.647)	HMMPfam_Metallophos,HMMSmart_PP2Ac,superfamily_SSF56300
SEC24C	9632	genome.wustl.edu	37	10	75529411	75529411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004922.2	+1	reviewed	p.R868C	1.000	95	0%	59	44.1%	116	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
VCL	7414	genome.wustl.edu	37	10	75868840	75868840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014000.2	+1	reviewed	p.G891R	1.000	96	0%	27	33.3%	47	40.4%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
ENSG00000250779	0	genome.wustl.edu	37	10	75871501	75871501	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000506015	-1	novel	NULL	0.071	13	0%	15	73.3%	0	-	-	-	-	-
KAT6B	23522	genome.wustl.edu	37	10	76735881	76735881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012330.2	+1	validated	p.R596W	1.000	87	0%	28	39.3%	4	50%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78844419	78844419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014797.2	-1	reviewed	p.A500V	1.000	60	0%	30	53.3%	8	62.5%	possibly_damaging(0.626)	deleterious(0.01)	deleterious(0.624)	superfamily_NAD(P)-binding Rossmann-fold domains
DLG5	9231	genome.wustl.edu	37	10	79555860	79555860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004747.3	-1	reviewed	p.D1799N	1.000	58	0%	51	47.1%	78	51.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
DLG5	9231	genome.wustl.edu	37	10	79576397	79576397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004747.3	-1	reviewed	p.S1313P	1.000	214	0%	88	11.4%	38	7.8%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
POLR3A	11128	genome.wustl.edu	37	10	79743722	79743722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007055.3	-1	validated	p.L1129F	1.000	78	0%	79	38%	13	38.4%	probably_damaging(0.961)	tolerated(0.05)	deleterious(0.750)	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
SFTPA2	729238	genome.wustl.edu	37	10	81316968	81316968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098668.2	-1	reviewed	p.F248L	0.995	231	0%	64	37.5%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Lectin_C,superfamily_C-type lectin-like
SFTPA2	729238	genome.wustl.edu	37	10	81317181	81317181	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098668.2	-1	reviewed	p.F177	0.259	291	0%	89	39.3%	1	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TSPAN14	81619	genome.wustl.edu	37	10	82273803	82273803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030927.2	+1	validated	p.Y202C	1.000	226	0%	185	40.5%	60	51.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
SH2D4B	387694	genome.wustl.edu	37	10	82330002	82330002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207372.2	+1	validated	p.E93K	0.997	129	0%	54	50%	0	-	benign(0.4)	tolerated(0.07)	neutral(0.448)	NULL
NRG3	10718	genome.wustl.edu	37	10	83926577	83926577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000404576	+1	known	p.K52T	0.000	371	0%	87	44.8%	0	-	benign(0.139)	deleterious(0.02)	neutral(0.395)	NULL
NRG3	10718	genome.wustl.edu	37	10	84733656	84733656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010848.3	+1	reviewed	p.S466Y	0.945	120	0%	37	48.6%	0	-	possibly_damaging(0.63)	deleterious(0.01)	deleterious(0.626)	NULL
GHITM	27069	genome.wustl.edu	37	10	85904701	85904701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014394.2	+1	validated	p.T138A	1.000	180	0%	166	38.6%	21	33.3%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_UPF0005
CDHR1	92211	genome.wustl.edu	37	10	85970880	85970880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033100.2	+1	reviewed	p.P482S	1.000	73	0%	41	58.5%	1	0%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_Cadherin,superfamily_Cadherin-like
GRID1	2894	genome.wustl.edu	37	10	87898578	87898578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017551.2	-1	reviewed	p.E242K	0.997	120	0%	25	24%	0	-	benign(0.023)	tolerated(0.09)	neutral(0.297)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
WAPAL	23063	genome.wustl.edu	37	10	88206017	88206017	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015045.2	-1	validated	p.E1102*	1.000	132	0%	191	44%	72	11.1%	-	-	-	superfamily_ARM repeat
WAPAL	23063	genome.wustl.edu	37	10	88277343	88277343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015045.2	-1	validated	p.K162Q	0.900	73	0%	196	40.8%	12	16.6%	benign(0.429)	tolerated(0.18)	neutral(0.196)	NULL
MMRN2	79812	genome.wustl.edu	37	10	88705408	88705408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024756.2	-1	validated	p.L68S	0.198	28	0%	31	35.5%	6	0%	benign(0.305)	tolerated(0.35)	neutral(0.116)	HMMPfam_EMI
GLUD1	2746	genome.wustl.edu	37	10	88854189	88854189	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005271.3	-1	reviewed	p.N113I	1.000	21	0%	20	35%	33	36.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ELFV_dehydrog_N,superfamily_SSF53223
PAPSS2	9060	genome.wustl.edu	37	10	89501052	89501052	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001015880.1	+1	reviewed	p.R383	0.001	229	0%	105	50.5%	3	0%	-	-	-	HMMPfam_ATP-sulfurylase,superfamily_PUA-like
ATAD1	84896	genome.wustl.edu	37	10	89516630	89516630	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032810.2	-1	provisional	p.F294C	1.000	98	0%	61	44.3%	47	34%	benign(0.199)	deleterious(0.03)	neutral(0.384)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371953	+1	known	p.R130Q	1.000	284	0%	84	39.3%	99	52.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692940	89692940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371953	+1	known	p.R142W	1.000	223	0%	64	37.5%	74	40.5%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720658	89720658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371953	+1	known	p.M270T	1.000	116	0%	42	42.9%	64	50%	possibly_damaging(0.9)	deleterious(0.03)	deleterious(0.721)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
LIPJ	142910	genome.wustl.edu	37	10	90365396	90365396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010939.2	+1	validated	p.N268H	0.029	341	0%	93	47.3%	1	100%	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
LIPF	8513	genome.wustl.edu	37	10	90438413	90438413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004190.2	+1	reviewed	p.S391Y	0.000	117	0%	47	38.3%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
ACTA2	59	genome.wustl.edu	37	10	90697964	90697964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001141945.1	-1	reviewed	p.N282D	1.000	337	0%	66	57.6%	116	0.8%	benign(0.004)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
IFIT1	3434	genome.wustl.edu	37	10	91162829	91162829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001548.3	+1	validated	p.S266F	0.000	77	0%	39	48.7%	5	20%	possibly_damaging(0.753)	deleterious(0.04)	deleterious(0.625)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
KIF20B	9585	genome.wustl.edu	37	10	91468936	91468936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016195.2	+1	validated	p.E54K	0.999	33	0%	60	48.3%	0	-	benign(0.066)	tolerated(0.38)	neutral(0.022)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91497726	91497726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016195.2	+1	validated	p.R1003Q	0.000	44	0%	38	34.2%	3	0%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
KIF20B	9585	genome.wustl.edu	37	10	91514307	91514307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016195.2	+1	validated	p.K1420N	0.997	114	0%	77	45.5%	4	50%	benign(0.296)	deleterious(0)	deleterious(0.536)	NULL
KIF20B	9585	genome.wustl.edu	37	10	91514366	91514366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016195.2	+1	validated	p.R1440Q	0.997	119	0%	81	39.5%	9	22.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PPP1R3C	5507	genome.wustl.edu	37	10	93390192	93390192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005398.4	-1	provisional	p.R149Q	1.000	173	0%	80	40%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BTAF1	9044	genome.wustl.edu	37	10	93748947	93748947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003972.2	+1	validated	p.D822N	0.081	75	0%	56	42.9%	7	42.8%	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_ARM repeat
KIF11	3832	genome.wustl.edu	37	10	94388625	94388625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004523.3	+1	reviewed	p.I426M	0.053	117	0%	172	38.4%	41	43.9%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
EXOC6	54536	genome.wustl.edu	37	10	94675593	94675593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019053.4	+1	reviewed	p.R248C	0.003	89	0%	91	33%	9	33.3%	benign(0.003)	tolerated(0.18)	neutral(0.056)	NULL
CYP26A1	1592	genome.wustl.edu	37	10	94834787	94834787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000783.3	+1	reviewed	p.F222L	1.000	7	0.000	12	0.500	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_p450,superfamily_Cytochrome_P450
MYOF	26509	genome.wustl.edu	37	10	95111509	95111509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013451.3	-1	reviewed	p.F1192L	0.982	335	0%	216	49.5%	16	37.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CEP55	55165	genome.wustl.edu	37	10	95276942	95276942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127182.1	+1	validated	p.E310D	1.000	100	0%	108	37%	43	51.1%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	NULL
O3FAR1	338557	genome.wustl.edu	37	10	95335856	95335856	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181745.2	+1	validated	p.S192	0.000	453	0%	270	15.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
O3FAR1	338557	genome.wustl.edu	37	10	95347104	95347104	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181745.2	+1	validated	p.I291N	1.000	223	0%	158	42.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PDE6C	5146	genome.wustl.edu	37	10	95400676	95400676	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006204.3	+1	reviewed	e14-1	1.000	135	0%	47	55.3%	0	-	-	-	-	-
PDE6C	5146	genome.wustl.edu	37	10	95418757	95418757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006204.3	+1	reviewed	p.E712D	1.000	147	0%	86	38.4%	0	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
LGI1	9211	genome.wustl.edu	37	10	95557487	95557487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005097.2	+1	reviewed	p.N534T	1.000	47	0%	33	33.3%	0	-	benign(0.005)	tolerated(0.15)	neutral(0.241)	HMMPfam_EPTP
PLCE1	51196	genome.wustl.edu	37	10	95791125	95791125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016341.3	+1	reviewed	p.N108H	0.261	88	0%	21	42.9%	2	50%	benign(0.163)	deleterious(0)	neutral(0.459)	NULL
PLCE1	51196	genome.wustl.edu	37	10	96018830	96018830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016341.3	+1	reviewed	p.R1246Q	1.000	384	0%	94	48.9%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_EF-hand
PLCE1	51196	genome.wustl.edu	37	10	96033369	96033369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016341.3	+1	reviewed	p.F1519L	1.000	90	0%	46	43.5%	3	33.3%	probably_damaging(0.971)	tolerated(0.16)	deleterious(0.472)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96053396	96053396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016341.3	+1	reviewed	p.S1723R	1.000	55	0%	39	43.6%	3	66.6%	possibly_damaging(0.704)	tolerated(0.55)	neutral(0.261)	superfamily_PLC-like phosphodiesterases
PLCE1	51196	genome.wustl.edu	37	10	96084684	96084684	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016341.3	+1	reviewed	p.F2252	1.000	85	0%	77	42.9%	7	28.5%	-	-	-	NULL
NOC3L	64318	genome.wustl.edu	37	10	96106269	96106269	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022451.9	-1	provisional	p.V434	1.000	212	0%	241	39.4%	12	33.3%	-	-	-	NULL
TBC1D12	23232	genome.wustl.edu	37	10	96290979	96290979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015188.1	+1	validated	p.K674T	1.000	185	0%	189	42.3%	2	50%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
HELLS	3070	genome.wustl.edu	37	10	96356854	96356854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018063.3	+1	reviewed	p.R803Q	1.000	265	0%	160	43.8%	23	34.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYP2C19	1557	genome.wustl.edu	37	10	96541618	96541618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000769.1	+1	reviewed	p.G228V	0.867	98	0%	48	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2C19	1557	genome.wustl.edu	37	10	96580279	96580279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000769.1	+1	reviewed	p.F282L	0.083	277	0%	134	40.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_p450,superfamily_Cytochrome_P450
PDLIM1	9124	genome.wustl.edu	37	10	96998378	96998378	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020992.2	-1	provisional	p.S250	0.007	270	0%	117	41.9%	247	55.4%	-	-	-	NULL
TCTN3	26123	genome.wustl.edu	37	10	97444363	97444363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015631.5	-1	validated	p.T330A	1.000	93	0%	110	50%	59	49.1%	possibly_damaging(0.95)	tolerated(0.56)	neutral(0.400)	HMMPfam_DUF1619
ZNF518A	9849	genome.wustl.edu	37	10	97916763	97916763	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371192	+1	known	p.R228	1.000	117	0%	45	11.1%	1	100%	-	-	-	HMMSmart_SM00355
ZNF518A	9849	genome.wustl.edu	37	10	97919842	97919842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371192	+1	known	p.F1255I	0.022	13	0%	23	60.9%	5	60%	-	-	-	NULL
PIK3AP1	118788	genome.wustl.edu	37	10	98411319	98411319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152309.2	-1	validated	p.E268*	1.000	192	0%	177	44.6%	1	0%	-	-	-	NULL
C10orf12	26148	genome.wustl.edu	37	10	98742682	98742682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015652.2	+1	predicted	p.S512L	0.767	37	0%	39	43.6%	2	100%	benign(0)	deleterious(0)	neutral(0.445)	NULL
C10orf12	26148	genome.wustl.edu	37	10	98744749	98744749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015652.2	+1	predicted	p.T1201M	0.000	66	0%	40	25%	1	0%	possibly_damaging(0.742)	deleterious(0)	deleterious(0.717)	NULL
SLIT1	6585	genome.wustl.edu	37	10	98817003	98817003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003061.2	-1	validated	p.R374H	1.000	92	0%	120	43.3%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SLIT1	6585	genome.wustl.edu	37	10	98824583	98824583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003061.2	-1	validated	p.A179V	1.000	262	0%	87	48.3%	0	-	possibly_damaging(0.819)	deleterious(0.02)	deleterious(0.693)	HMMSmart_SM00369,superfamily_L domain-like
ARHGAP19	84986	genome.wustl.edu	37	10	98988842	98988842	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000316676	-1	known	e12-2	0.001	180	0%	134	43.3%	0	-	-	-	-	-
ARHGAP19	84986	genome.wustl.edu	37	10	98989535	98989535	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032900.4	-1	validated	p.E461*	1.000	236	0%	240	42.5%	1	0%	-	-	-	NULL
ARHGAP19	84986	genome.wustl.edu	37	10	99023270	99023270	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032900.4	-1	validated	p.N174H	1.000	108	0%	98	36.7%	3	66.6%	benign(0.38)	tolerated(1)	neutral(0.121)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP19	84986	genome.wustl.edu	37	10	99024582	99024582	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032900.4	-1	validated	e3+1	1.000	117	0%	102	39.2%	0	-	-	-	-	-
C10orf28	27291	genome.wustl.edu	37	10	99969100	99969100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014472.4	+1	validated	p.R410Q	0.000	242	0%	56	42.9%	12	58.3%	benign(0.117)	tolerated(0.19)	neutral(0.059)	NULL
HPS1	3257	genome.wustl.edu	37	10	100202989	100202989	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000195.2	-1	reviewed	p.C3	0.090	256	0%	75	40%	76	53.9%	-	-	-	NULL
CNNM1	26507	genome.wustl.edu	37	10	101124759	101124759	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020348.2	+1	validated	p.L726	1.000	444	0%	129	45.7%	0	-	-	-	-	NULL
ABCC2	1244	genome.wustl.edu	37	10	101578879	101578879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000392.3	+1	reviewed	p.L825I	1.000	156	0%	111	45%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC2	1244	genome.wustl.edu	37	10	101611295	101611295	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000392.3	+1	reviewed	p.C1515	0.997	66	0%	88	47.7%	1	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CPN1	1369	genome.wustl.edu	37	10	101808527	101808527	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001308.2	-1	reviewed	p.A406	0.013	137	0%	27	48.1%	1	0%	-	-	-	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain
CHUK	1147	genome.wustl.edu	37	10	101969509	101969509	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001278.3	-1	reviewed	p.I324S	1.000	115	0%	117	45.3%	15	60%	benign(0.045)	tolerated(0.12)	neutral(0.263)	superfamily_Protein kinase-like (PK-like)
CHUK	1147	genome.wustl.edu	37	10	101978531	101978531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001278.3	-1	reviewed	p.E247D	1.000	264	0%	148	48%	19	42.1%	benign(0.001)	tolerated(1)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HIF1AN	55662	genome.wustl.edu	37	10	102296380	102296380	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017902.2	+1	validated	p.E130	1.000	72	0%	109	47.7%	26	53.8%	-	-	-	superfamily_SSF51197
HIF1AN	55662	genome.wustl.edu	37	10	102306916	102306916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017902.2	+1	validated	p.R305I	1.000	77	0%	67	47.8%	19	36.8%	benign(0.03)	deleterious(0.05)	neutral(0.347)	HMMSmart_JmjC,superfamily_SSF51197
SFXN3	81855	genome.wustl.edu	37	10	102794502	102794502	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030971.3	+1	validated	p.Q21H	0.998	177	0%	82	51.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mtc
SFXN3	81855	genome.wustl.edu	37	10	102794572	102794572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030971.3	+1	validated	p.A45T	0.002	154	0%	68	58.8%	11	9%	benign(0.004)	tolerated(0.55)	neutral(0.007)	HMMPfam_Mtc
TLX1NB	100038246	genome.wustl.edu	37	10	102849469	102849469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001085398.1	-1	validated	p.S65Y	0.002	27	0%	19	31.6%	0	-	-	-	-	NULL
PPRC1	23082	genome.wustl.edu	37	10	103899864	103899864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015062.3	+1	reviewed	p.E533D	0.080	64	0%	46	45.7%	19	73.6%	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	NULL
ELOVL3	83401	genome.wustl.edu	37	10	103986353	103986353	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152310.1	+1	provisional	p.Q16	0.991	104	0%	81	14.8%	0	-	-	-	-	NULL
ELOVL3	83401	genome.wustl.edu	37	10	103988319	103988319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152310.1	+1	provisional	p.E127*	1.000	69	0%	143	43.4%	0	-	-	-	-	HMMPfam_ELO
TMEM180	79847	genome.wustl.edu	37	10	104229791	104229791	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024789.3	+1	validated	p.F70	1.000	176	0%	84	35.7%	1	100%	-	-	-	superfamily_MFS_gen_substrate_transporter
C10orf26	54838	genome.wustl.edu	37	10	104572759	104572759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083913.1	+1	validated	p.D255N	1.000	19	0%	25	36%	36	38.8%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
INA	9118	genome.wustl.edu	37	10	105037956	105037956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032727.3	+1	reviewed	p.R330C	1.000	11	0.000	9	0.444	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
PDCD11	22984	genome.wustl.edu	37	10	105158283	105158283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014976.1	+1	validated	p.D34Y	1.000	100	0%	130	46.9%	5	40%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105420802	105420802	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000420222	-1	known	p.E136*	1.000	50	0%	58	51.7%	7	71.4%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SLK	9748	genome.wustl.edu	37	10	105761326	105761326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014720.2	+1	provisional	p.S330Y	1.000	103	0%	82	41.5%	28	53.5%	possibly_damaging(0.688)	deleterious(0.04)	deleterious(0.595)	superfamily_Protein kinase-like (PK-like)
SLK	9748	genome.wustl.edu	37	10	105762077	105762077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014720.2	+1	provisional	p.L381I	0.012	52	0%	60	41.7%	11	45.4%	benign(0.027)	tolerated(0.39)	neutral(0.018)	superfamily_Protein kinase-like (PK-like)
COL17A1	1308	genome.wustl.edu	37	10	105831820	105831820	+	Nonsense_Mutation	SNP	G	G	A	rs121912774		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000494.3	-1	reviewed	p.R145*	1.000	336	0%	94	51.1%	0	-	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105889920	105889920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025145.5	-1	provisional	p.F1659L	1.000	318	0%	316	44.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR96	80217	genome.wustl.edu	37	10	105889993	105889993	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000434629	-1	known	p.Q966R	0.005	383	0%	371	43.1%	0	-	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105920805	105920805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025145.5	-1	provisional	p.K1177T	1.000	614	0%	300	37.3%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_WD40 repeat-like
WDR96	80217	genome.wustl.edu	37	10	105923953	105923953	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025145.5	-1	provisional	p.R1049*	0.038	560	0%	135	48.9%	0	-	-	-	-	superfamily_WD40 repeat-like
WDR96	80217	genome.wustl.edu	37	10	105947249	105947249	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025145.5	-1	provisional	p.V563	0.000	166	0%	92	48.9%	1	0%	-	-	-	superfamily_WD40 repeat-like
WDR96	80217	genome.wustl.edu	37	10	105990518	105990518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025145.5	-1	provisional	p.F50C	1.000	102	0%	188	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
GSTO1	9446	genome.wustl.edu	37	10	106019443	106019443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004832.1	+1	reviewed	p.E85K	1.000	165	0%	181	49.2%	224	45.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_GST_N,superfamily_Thiordxn-like_fd
ITPRIP	85450	genome.wustl.edu	37	10	106075739	106075739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033397.2	-1	provisional	p.P24L	1.000	90	0%	25	36%	13	61.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106124519	106124519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008723.1	+1	validated	p.E157*	1.000	183	0%	70	47.1%	0	-	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106130776	106130776	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008723.1	+1	validated	p.E352*	0.999	107	0%	64	45.3%	0	-	-	-	-	NULL
CCDC147	159686	genome.wustl.edu	37	10	106153215	106153215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008723.1	+1	validated	p.K552N	1.000	104	0%	36	58.3%	0	-	benign(0.171)	tolerated(0.05)	neutral(0.361)	NULL
SORCS3	22986	genome.wustl.edu	37	10	106849590	106849590	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014978.1	+1	reviewed	p.T362	0.004	386	0%	31	41.9%	0	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
SORCS3	22986	genome.wustl.edu	37	10	106899195	106899195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014978.1	+1	reviewed	p.R418Q	0.996	356	0%	27	51.9%	0	-	benign(0.271)	tolerated(0.11)	neutral(0.301)	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108489808	108489808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013031.1	-1	reviewed	p.H342Y	1.000	286	0%	125	36.8%	0	-	benign(0)	tolerated(1)	-	HMMSmart_VPS10,superfamily_SSF110296
ADD3	120	genome.wustl.edu	37	10	111879075	111879075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016824.3	+1	reviewed	p.R275I	1.000	256	0%	141	48.2%	23	52.1%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
MXI1	4601	genome.wustl.edu	37	10	112039790	112039790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130439.3	+1	reviewed	p.R224Q	1.000	190	0%	96	42.7%	91	32.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMC3	9126	genome.wustl.edu	37	10	112337617	112337617	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005445.3	+1	reviewed	p.R99*	1.000	104	0%	143	49%	17	17.6%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC3	9126	genome.wustl.edu	37	10	112338406	112338406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005445.3	+1	reviewed	p.L124R	1.000	192	0%	170	41.8%	24	29.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC3	9126	genome.wustl.edu	37	10	112350295	112350295	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005445.3	+1	reviewed	p.A545	1.000	164	0%	102	12.7%	21	0%	-	-	-	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC3	9126	genome.wustl.edu	37	10	112361731	112361731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005445.3	+1	reviewed	p.R967Q	1.000	43	0%	73	38.4%	65	66.1%	possibly_damaging(0.482)	deleterious(0.01)	deleterious(0.566)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
PDCD4	27250	genome.wustl.edu	37	10	112645019	112645019	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014456.3	+1	reviewed	p.C150	1.000	151	0%	98	39.8%	52	50%	-	-	-	NULL
SHOC2	8036	genome.wustl.edu	37	10	112724138	112724138	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007373.3	+1	reviewed	p.E8*	1.000	72	0%	38	39.5%	18	55.5%	-	-	-	NULL
SHOC2	8036	genome.wustl.edu	37	10	112724563	112724563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007373.3	+1	reviewed	p.M149I	1.000	81	0%	22	40.9%	12	33.3%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
ADRA2A	150	genome.wustl.edu	37	10	112838084	112838084	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000681.3	+1	reviewed	p.V110	0.998	62	0%	32	28.1%	4	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NRAP	4892	genome.wustl.edu	37	10	115356908	115356908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198060.2	-1	validated	p.F1456L	1.000	284	0%	208	18.3%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Nebulin,HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115373960	115373960	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198060.2	-1	validated	p.A1094	0.683	251	0%	92	60.9%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NRAP	4892	genome.wustl.edu	37	10	115374706	115374706	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198060.2	-1	validated	e28-1	1.000	361	0%	102	51%	0	-	-	-	-	-
NRAP	4892	genome.wustl.edu	37	10	115380387	115380387	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198060.2	-1	validated	p.K950	1.000	366	0%	81	49.4%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
C10orf81	79949	genome.wustl.edu	37	10	115527103	115527103	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000369310	+1	known	e4-1	1.000	87	0%	35	48.6%	0	-	-	-	-	-
C10orf118	55088	genome.wustl.edu	37	10	115910861	115910861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018017.2	-1	validated	p.R293Q	0.999	709	0%	182	47.3%	7	42.8%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
FAM160B1	57700	genome.wustl.edu	37	10	116606412	116606412	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020940.3	+1	validated	p.R498I	1.000	132	0%	90	47.8%	12	75%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PNLIPRP3	119548	genome.wustl.edu	37	10	118225643	118225643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011709.2	+1	validated	p.I297S	0.695	404	0%	352	44.6%	0	-	possibly_damaging(0.671)	tolerated(0.07)	deleterious(0.557)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIPRP1	5407	genome.wustl.edu	37	10	118351366	118351366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006229.2	+1	provisional	p.L45I	0.209	158	0%	65	49.2%	2	0%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIPRP2	5408	genome.wustl.edu	37	10	118390786	118390786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005396.4	+1	validated	p.S246Y	1.000	305	0%	180	41.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HSPA12A	259217	genome.wustl.edu	37	10	118439072	118439072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025015.2	-1	validated	p.I410L	1.000	203	0.5%	120	45%	0	-	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	superfamily_SSF53067
KIAA1598	57698	genome.wustl.edu	37	10	118711512	118711512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127211.1	-1	validated	p.R148*	1.000	77	0%	84	44%	17	11.7%	-	-	-	NULL
VAX1	11023	genome.wustl.edu	37	10	118891801	118891801	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199131.2	-1	reviewed	p.Q160H	0.000	40	0%	127	46.5%	0	-	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00389
KCNK18	338567	genome.wustl.edu	37	10	118969771	118969771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181840.1	+1	provisional	p.F372L	0.759	171	0%	204	45.6%	0	-	probably_damaging(0.98)	tolerated(0.29)	neutral(0.453)	NULL
PDZD8	118987	genome.wustl.edu	37	10	119042954	119042954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173791.3	-1	provisional	p.G1097D	1.000	261	0%	178	47.8%	72	40.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC100129413	100129413	genome.wustl.edu	37	10	119799784	119799784	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001726297.1	+1	model	p.E60*	1.000	115	0%	97	47.4%	4	0%	possibly_damaging(0.946)	tolerated(0.07)	deleterious(0.709)	NULL
FAM45A	404636	genome.wustl.edu	37	10	120867630	120867630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207009.2	+1	validated	p.F69S	1.000	74	0%	141	47.5%	16	37.5%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
INPP5F	22876	genome.wustl.edu	37	10	121551401	121551401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014937.2	+1	reviewed	p.K155N	1.000	120	0%	257	42%	10	50%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMPfam_Syja_N
INPP5F	22876	genome.wustl.edu	37	10	121587396	121587396	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_003252.1	+1	reviewed	NULL	0.000	4	0.000	11	0.455	13	53.8%	-	-	-	-
SEC23IP	11196	genome.wustl.edu	37	10	121662506	121662506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007190.2	+1	reviewed	p.E298*	1.000	244	0%	172	38.4%	14	50%	-	-	-	NULL
WDR11	55717	genome.wustl.edu	37	10	122640387	122640387	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018117.11	+1	reviewed	p.I571	0.597	110	0%	76	46.1%	7	42.8%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
FGFR2	2263	genome.wustl.edu	37	10	123258036	123258036	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022970.3	-1	reviewed	p.N550H	1.000	211	0%	245	42.9%	32	65.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TACC2	10579	genome.wustl.edu	37	10	123842567	123842567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206862.2	+1	reviewed	p.Q184H	0.000	11	0%	18	66.7%	1	0%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
TACC2	10579	genome.wustl.edu	37	10	123844933	123844933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206862.2	+1	reviewed	p.S973Y	0.000	24	0%	28	39.3%	6	50%	possibly_damaging(0.528)	deleterious(0)	deleterious(0.623)	NULL
BTBD16	118663	genome.wustl.edu	37	10	124066803	124066803	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144587.2	+1	validated	p.T297	0.001	340	0.3%	299	42.8%	0	-	-	-	-	NULL
CUZD1	50624	genome.wustl.edu	37	10	124595821	124595821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022034.4	-1	provisional	p.K288R	0.902	119	0%	152	44.7%	0	-	benign(0.054)	tolerated(0.86)	neutral(0.004)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
C10orf88	80007	genome.wustl.edu	37	10	124712452	124712452	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024942.3	-1	validated	p.I87	0.001	193	0%	190	40%	4	25%	-	-	-	NULL
IKZF5	64376	genome.wustl.edu	37	10	124753884	124753884	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022466.5	-1	provisional	p.T224	0.783	352	0%	255	41.2%	13	46.1%	-	-	-	NULL
C10orf137	26098	genome.wustl.edu	37	10	127442317	127442317	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015608.2	+1	validated	p.E1116*	0.991	332	0%	127	33.9%	10	20%	-	-	-	NULL
BCCIP	56647	genome.wustl.edu	37	10	127529842	127529842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016567.3	+1	reviewed	p.V265L	0.000	80	0%	55	45.5%	34	52.9%	benign(0.003)	tolerated(0.29)	neutral(0.029)	NULL
ADAM12	8038	genome.wustl.edu	37	10	127760179	127760179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003474.4	-1	reviewed	p.L400S	1.000	235	0%	46	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM12	8038	genome.wustl.edu	37	10	127967554	127967554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003474.4	-1	reviewed	p.H64N	1.000	270	0%	210	50.5%	1	0%	possibly_damaging(0.923)	tolerated(0.16)	neutral(0.432)	HMMPfam_Pep_M12B_propep
C10orf90	118611	genome.wustl.edu	37	10	128149983	128149983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004298.2	-1	validated	p.S569Y	0.205	133	0%	41	39%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C10orf90	118611	genome.wustl.edu	37	10	128193576	128193576	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004298.2	-1	validated	p.E65*	0.002	146	0%	122	41%	0	-	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	128908585	128908585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398025	+1	known	p.E843K	1.000	219	0.5%	96	38.5%	13	69.2%	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
FAM196A	642938	genome.wustl.edu	37	10	128973653	128973653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039762.2	-1	validated	p.S336I	0.698	43	0%	35	37.1%	0	-	benign(0.039)	tolerated(0.18)	neutral(0.058)	NULL
FAM196A	642938	genome.wustl.edu	37	10	128974003	128974003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039762.2	-1	validated	p.E219D	0.188	40	0%	34	38.2%	1	100%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129242541	129242541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398025	+1	known	p.S1849L	0.999	126	0%	66	56.1%	30	56.6%	probably_damaging(0.959)	tolerated(0.11)	deleterious(0.674)	NULL
MKI67	4288	genome.wustl.edu	37	10	129901985	129901985	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002417.4	-1	reviewed	p.E2707*	0.000	191	0.5%	155	45.2%	31	12.9%	-	-	-	HMMPfam_K167R
TCERG1L	256536	genome.wustl.edu	37	10	132891455	132891455	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174937.3	-1	validated	p.E577D	0.997	185	0%	277	24.5%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
DPYSL4	10570	genome.wustl.edu	37	10	134008424	134008424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006426.2	+1	validated	p.A130V	0.001	4	0.000	10	0.400	65	0%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
DPYSL4	10570	genome.wustl.edu	37	10	134018389	134018389	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006426.2	+1	validated	p.I558	1.000	30	0%	39	46.2%	37	94.5%	-	-	-	NULL
LRRC27	80313	genome.wustl.edu	37	10	134150894	134150894	+	RNA	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026559.1	+1	validated	NULL	0.000	5	0.000	48	0.458	0	-	-	-	-	-
LRRC27	80313	genome.wustl.edu	37	10	134188732	134188732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143757.1	+1	validated	p.R527C	0.000	50	0%	96	44.8%	14	28.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
INPP5A	3632	genome.wustl.edu	37	10	134540403	134540403	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000342652	+1	known	p.R214C	0.446	100	0%	103	43.7%	12	25%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
INPP5A	3632	genome.wustl.edu	37	10	134563108	134563108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005539.3	+1	reviewed	p.D274N	1.000	9	0.000	25	0.480	5	20%	possibly_damaging(0.461)	tolerated(0.32)	neutral(0.175)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
TTC40	54777	genome.wustl.edu	37	10	134646924	134646924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000368586	-1	known	p.S2352Y	0.000	41	0%	57	36.8%	0	-	probably_damaging(0.959)	tolerated(0.08)	deleterious(0.703)	NULL
KNDC1	85442	genome.wustl.edu	37	10	135015105	135015105	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152643.6	+1	validated	p.F1030	0.006	9	0.000	23	0.391	0	-	-	-	-	NULL
KNDC1	85442	genome.wustl.edu	37	10	135032358	135032358	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152643.6	+1	validated	p.K1567N	0.944	36	0%	90	47.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RIC8A	60626	genome.wustl.edu	37	11	211298	211298	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021932.4	+1	provisional	p.N306	1.000	127	0%	105	40%	112	47.3%	-	-	-	HMMPfam_Ric8
ATHL1	80162	genome.wustl.edu	37	11	292901	292901	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025092.4	+1	validated	p.R392*	0.225	46	0%	104	44.2%	2	0%	-	-	-	HMMPfam_Glyco_hydro_65m,superfamily_Six-hairpin glycosidases
PTDSS2	81490	genome.wustl.edu	37	11	488250	488250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030783.1	+1	provisional	p.E225K	1.000	35	0%	29	51.7%	67	49.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PSS
LRRC56	115399	genome.wustl.edu	37	11	551756	551756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198075.3	+1	validated	p.G301V	0.346	4	0.000	21	0.286	7	57.1%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
PDDC1	347862	genome.wustl.edu	37	11	774097	774097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182612.2	-1	validated	p.F53C	0.999	14	0%	25	60%	32	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DJ-1_PfpI,superfamily_Class I glutamine amidotransferase-like
CHID1	66005	genome.wustl.edu	37	11	903007	903007	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142676.1	-1	validated	p.A97	0.147	31	0%	68	42.6%	166	43.9%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1263684	1263684	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002458.1	+1	validated	p.K1861N	0.019	69	0%	50	44%	0	-	benign(0.099)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272524	1272524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002458.1	+1	validated	p.S4808Y	0.001	53	0%	206	41.7%	0	-	unknown(0)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272562	1272562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002458.1	+1	validated	p.I4821V	0.000	33	0%	91	44%	0	-	unknown(0)	-	-	NULL
BRSK2	9024	genome.wustl.edu	37	11	1463781	1463781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003957.2	+1	validated	p.D159Y	1.000	28	0%	58	39.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
KRTAP5-3	387266	genome.wustl.edu	37	11	1628905	1628905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012708.2	-1	validated	p.K237N	0.999	518	0.2%	119	10.9%	0	-	unknown(0)	tolerated(0.26)	-	NULL
KRTAP5-3	387266	genome.wustl.edu	37	11	1629428	1629428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012708.2	-1	validated	p.S63F	0.432	122	0%	57	45.6%	0	-	unknown(0)	tolerated(0.12)	-	NULL
KRTAP5-5	439915	genome.wustl.edu	37	11	1651202	1651202	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001480.2	+1	validated	p.G44	0.388	39	5.1%	31	22.6%	0	-	-	-	-	NULL
TNNI2	7136	genome.wustl.edu	37	11	1862079	1862079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003282.3	+1	reviewed	p.D73N	0.993	12	0%	28	46.4%	0	-	possibly_damaging(0.934)	deleterious(0.03)	deleterious(0.744)	HMMPfam_Troponin
LSP1	4046	genome.wustl.edu	37	11	1874388	1874388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002339.2	+1	reviewed	p.S5L	0.061	36	0%	43	14%	5	0%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
LSP1	4046	genome.wustl.edu	37	11	1905220	1905220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002339.2	+1	reviewed	p.E186G	0.002	35	0%	20	50%	25	0%	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
INS	3630	genome.wustl.edu	37	11	2181072	2181072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000421783	-1	known	p.R73H	0.042	10	0%	36	33.3%	0	-	probably_damaging(0.977)	tolerated(0.19)	neutral(0.468)	HMMPfam_Insulin,HMMSmart_SM00078
INS	3630	genome.wustl.edu	37	11	2181097	2181097	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000421783	-1	known	p.E65*	1.000	10	0%	39	64.1%	0	-	-	-	-	HMMPfam_Insulin,HMMSmart_SM00078
C11orf21	29125	genome.wustl.edu	37	11	2321946	2321946	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142946.1	-1	predicted	p.E53	0.000	15	0%	35	37.1%	0	-	-	-	-	NULL
TSSC4	10078	genome.wustl.edu	37	11	2423908	2423908	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005706.2	+1	reviewed	p.G15	0.000	7	0.000	16	0.312	76	39.4%	-	-	-	NULL
KCNQ1	3784	genome.wustl.edu	37	11	2606455	2606455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000218.2	+1	reviewed	p.S349L	0.999	55	0%	50	36%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
NAP1L4	4676	genome.wustl.edu	37	11	2975771	2975771	+	Nonsense_Mutation	SNP	C	C	A	rs12800238	byCluster;byFrequency	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005969.3	-1	reviewed	p.E341*	1.000	110	0%	64	42.2%	119	10.9%	-	-	-	HMMPfam_NAP
ZNF195	7748	genome.wustl.edu	37	11	3380448	3380448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130520.1	-1	validated	p.K597R	0.981	328	0%	83	45.8%	50	58%	benign(0.235)	tolerated(0.37)	neutral(0.042)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NUP98	4928	genome.wustl.edu	37	11	3723774	3723774	+	Missense_Mutation	SNP	T	T	G	rs141031626	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016320.4	-1	reviewed	p.N1144T	1.000	114	0%	66	40.9%	28	39.2%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
NUP98	4928	genome.wustl.edu	37	11	3752621	3752621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016320.4	-1	reviewed	p.K577T	1.000	272	0%	125	52%	23	52.1%	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
OR52B4	143496	genome.wustl.edu	37	11	4388777	4388777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005161.3	-1	validated	p.I250T	0.591	348	0%	27	48.1%	0	-	benign(0.072)	deleterious(0)	neutral(0.450)	HMMPfam_7tm_1,superfamily_SSF81321
OR52B4	143496	genome.wustl.edu	37	11	4389036	4389036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005161.3	-1	validated	p.L164I	0.010	110	0%	14	42.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM21	6737	genome.wustl.edu	37	11	4411453	4411453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003141.3	-1	reviewed	p.L63I	0.000	134	0.7%	41	56.1%	10	70%	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	superfamily_SSF57850
C11orf40	143501	genome.wustl.edu	37	11	4594673	4594673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144663.1	-1	provisional	p.F57L	0.000	198	0%	120	31.7%	0	-	unknown(0)	-	-	NULL
OR52I2	143502	genome.wustl.edu	37	11	4608533	4608533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005170.2	+1	validated	p.R164I	0.009	222	0%	39	28.2%	0	-	benign(0.118)	deleterious(0.01)	neutral(0.415)	HMMPfam_7tm_1,superfamily_SSF81321
OR51F2	119694	genome.wustl.edu	37	11	4843204	4843204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004753.1	+1	provisional	p.D197Y	0.870	599	0%	49	49%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR51S1	119692	genome.wustl.edu	37	11	4869839	4869839	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004758.1	-1	provisional	p.A200	0.000	143	0%	19	68.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51A7	119687	genome.wustl.edu	37	11	4928766	4928766	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004749.1	+1	provisional	p.H56R	1.000	279	0%	79	38%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_SSF81321
OR51G2	81282	genome.wustl.edu	37	11	4936033	4936033	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005238.1	-1	provisional	p.L287	0.000	76	0%	30	46.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR51A4	401666	genome.wustl.edu	37	11	4967904	4967904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005329.1	-1	provisional	p.V143I	0.000	438	0%	98	50%	0	-	benign(0.067)	tolerated(1)	neutral(0.004)	HMMPfam_7tm_1,superfamily_SSF81321
OR51A4	401666	genome.wustl.edu	37	11	4968138	4968138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005329.1	-1	provisional	p.L65I	0.986	406	0%	84	15.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_7tm_1,superfamily_SSF81321
OR51L1	119682	genome.wustl.edu	37	11	5020417	5020417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004755.1	+1	provisional	p.A69T	0.998	503	0%	81	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E2	119678	genome.wustl.edu	37	11	5080509	5080509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005164.2	-1	validated	p.L117I	0.830	245	0%	44	31.8%	0	-	possibly_damaging(0.933)	deleterious(0.02)	deleterious(0.762)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52A4	390053	genome.wustl.edu	37	11	5142290	5142290	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005222.2	-1	validated	p.L173	0.019	122	0.8%	10	40%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52A5	390054	genome.wustl.edu	37	11	5153404	5153404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005160.2	-1	validated	p.L157I	0.001	131	0%	39	28.2%	0	-	possibly_damaging(0.52)	tolerated(0.23)	neutral(0.216)	HMMPfam_7tm_1,superfamily_SSF81321
OR51V1	283111	genome.wustl.edu	37	11	5221437	5221437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004760.2	-1	validated	p.I165T	0.050	38	0%	15	46.7%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HBD	3045	genome.wustl.edu	37	11	5255230	5255230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000519.3	-1	reviewed	p.E102D	1.000	197	0%	29	55.2%	1	0%	possibly_damaging(0.794)	deleterious(0)	deleterious(0.742)	HMMPfam_Globin,superfamily_Globin-like
OR51B2	79345	genome.wustl.edu	37	11	5344746	5344746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033180.4	-1	validated	p.R261K	0.378	146	0%	45	40%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51Q1	390061	genome.wustl.edu	37	11	5443717	5443717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004757.2	+1	validated	p.S96F	0.892	536	0%	140	36.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR51Q1	390061	genome.wustl.edu	37	11	5443930	5443930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004757.2	+1	validated	p.R167Q	1.000	445	0.2%	136	36.8%	0	-	possibly_damaging(0.526)	tolerated(0.07)	deleterious(0.496)	HMMPfam_7tm_1,superfamily_SSF81321
OR51I1	390063	genome.wustl.edu	37	11	5462323	5462323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005288.2	-1	validated	p.N141S	0.000	214	0%	27	40.7%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51I2	390064	genome.wustl.edu	37	11	5475036	5475036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004754.2	+1	validated	p.F106L	0.965	213	0%	67	44.8%	0	-	benign(0.088)	tolerated(0.68)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
UBQLN3	50613	genome.wustl.edu	37	11	5528821	5528821	+	Nonstop_Mutation	SNP	C	C	A	rs12574024	byCluster;byFrequency;byHapMap	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017481.2	-1	reviewed	p.*656Y	0.045	29	0%	30	20%	0	-	-	-	-	NULL
UBQLN3	50613	genome.wustl.edu	37	11	5530616	5530616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017481.2	-1	reviewed	p.P58H	1.000	121	0%	82	61%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
UBQLNL	143630	genome.wustl.edu	37	11	5537034	5537034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145053.4	-1	validated	p.R213H	0.961	141	0%	57	50.9%	2	0%	benign(0)	tolerated(1)	-	NULL
TRIM22	10346	genome.wustl.edu	37	11	5730377	5730377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006074.3	+1	reviewed	p.K332N	0.000	416	0%	165	52.7%	15	20%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
TRIM22	10346	genome.wustl.edu	37	11	5730491	5730491	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006074.3	+1	reviewed	p.G370	0.971	328	0.3%	173	43.4%	5	40%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
OR52N1	79473	genome.wustl.edu	37	11	5809137	5809137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001913.1	-1	provisional	p.E304K	0.236	95	0%	13	92.3%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_SSF81321
OR52E6	390078	genome.wustl.edu	37	11	5863129	5863129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000379946	-1	known	p.R4I	0.087	129	0%	26	42.3%	0	-	benign(0.113)	tolerated(0.11)	neutral(0.281)	superfamily_Family A G protein-coupled receptor-like
OR56A3	390083	genome.wustl.edu	37	11	5968793	5968793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003443.2	+1	provisional	p.L73M	0.056	374	0%	67	41.8%	0	-	possibly_damaging(0.908)	tolerated(0.09)	deleterious(0.658)	HMMPfam_7tm_1,superfamily_SSF81321
OR56A5	390084	genome.wustl.edu	37	11	5989680	5989680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343047.1	-1	model	p.F15L	0.244	171	0%	94	53.2%	0	-	-	-	-	superfamily_SSF81321
OR56A4	120793	genome.wustl.edu	37	11	6023689	6023689	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005179.2	-1	provisional	p.K230	0.013	125	0%	42	52.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR56B4	196335	genome.wustl.edu	37	11	6129374	6129374	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005181.1	+1	provisional	p.L122	0.071	352	0%	67	47.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CNGA4	1262	genome.wustl.edu	37	11	6262964	6262964	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037329.2	+1	validated	p.L407	0.844	422	0%	84	46.4%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
SMPD1	6609	genome.wustl.edu	37	11	6412712	6412712	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000543.3	+1	reviewed	p.L139	1.000	110	0%	18	27.8%	12	33.3%	-	-	-	HMMSmart_SM00741,superfamily_Saposin
APBB1	322	genome.wustl.edu	37	11	6416789	6416789	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001164.2	-1	reviewed	p.K703T	1.000	27	0%	15	66.7%	8	50%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
HPX	3263	genome.wustl.edu	37	11	6458325	6458325	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000613.2	-1	reviewed	p.V262	0.410	102	0%	32	40.6%	1	100%	-	-	-	superfamily_Hemopexin
DNHD1	144132	genome.wustl.edu	37	11	6579419	6579419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144666.2	+1	provisional	p.S2965I	1.000	114	0%	48	50%	2	0%	possibly_damaging(0.951)	tolerated(0.48)	neutral(0.405)	NULL
DNHD1	144132	genome.wustl.edu	37	11	6585772	6585772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144666.2	+1	provisional	p.K3498N	0.009	196	0%	121	38%	1	0%	possibly_damaging(0.815)	deleterious(0.03)	deleterious(0.672)	NULL
ILK	3611	genome.wustl.edu	37	11	6629964	6629964	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014794.1	+1	reviewed	p.K131T	1.000	60	0%	80	37.5%	99	37.3%	possibly_damaging(0.615)	deleterious(0.01)	deleterious(0.619)	HMMPfam_Ank,superfamily_ANK
TPP1	1200	genome.wustl.edu	37	11	6640072	6640072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000391.3	-1	reviewed	p.Q55P	1.000	44	0%	34	50%	39	20.5%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ
TPP1	1200	genome.wustl.edu	37	11	6640463	6640463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000391.3	-1	reviewed	p.K18T	0.692	67	0%	73	43.8%	19	15.7%	benign(0.414)	deleterious(0)	deleterious(0.579)	NULL
DCHS1	8642	genome.wustl.edu	37	11	6647157	6647157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003737.2	-1	reviewed	p.E2242G	1.000	77	0%	67	38.8%	4	0%	probably_damaging(0.992)	tolerated(0.41)	neutral(0.463)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6662097	6662097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003737.2	-1	reviewed	p.D250Y	1.000	56	0%	38	55.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
OR10A2	341276	genome.wustl.edu	37	11	6891627	6891627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004460.1	+1	provisional	p.K214N	0.994	556	0%	204	45.6%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_SSF81321
OR2D2	120776	genome.wustl.edu	37	11	6912902	6912902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003700.1	-1	provisional	p.A277V	0.026	387	0%	43	41.9%	0	-	possibly_damaging(0.72)	deleterious(0.04)	deleterious(0.610)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF215	7762	genome.wustl.edu	37	11	6964316	6964316	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013250.2	+1	validated	p.E162	0.997	292	0%	50	34%	0	-	-	-	-	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF215	7762	genome.wustl.edu	37	11	6977415	6977415	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013250.2	+1	validated	p.G403*	1.000	134	0%	61	49.2%	4	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NLRP14	338323	genome.wustl.edu	37	11	7064596	7064596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176822.3	+1	reviewed	p.L447F	0.423	140	0%	55	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP14	338323	genome.wustl.edu	37	11	7067926	7067926	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176822.3	+1	reviewed	p.W662*	0.948	257	0%	89	55.1%	0	-	-	-	-	superfamily_SSF52047
NLRP14	338323	genome.wustl.edu	37	11	7081280	7081280	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176822.3	+1	reviewed	p.N930T	0.012	180	0%	18	38.9%	0	-	benign(0.157)	tolerated(0.41)	neutral(0.029)	superfamily_SSF52047
OLFML1	283298	genome.wustl.edu	37	11	7507122	7507122	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198474.3	+1	validated	p.R6*	0.000	336	0%	60	40%	0	-	-	-	-	NULL
PPFIBP2	8495	genome.wustl.edu	37	11	7663554	7663554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003621.2	+1	validated	p.F515V	1.000	30	0%	19	36.8%	21	52.3%	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	NULL
OVCH2	341277	genome.wustl.edu	37	11	7713155	7713155	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198185.2	-1	validated	p.D495	0.934	244	0%	56	42.9%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
OR5P2	120065	genome.wustl.edu	37	11	7818092	7818092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153444.1	-1	provisional	p.S133F	1.000	107	0.9%	29	44.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR5P2	120065	genome.wustl.edu	37	11	7818203	7818203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153444.1	-1	provisional	p.Q96R	0.993	144	0.7%	28	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR5P2	120065	genome.wustl.edu	37	11	7818347	7818347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153444.1	-1	provisional	p.S48Y	0.001	149	0%	29	51.7%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_7tm_1,superfamily_SSF81321
NLRP10	338322	genome.wustl.edu	37	11	7982381	7982381	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176821.3	-1	reviewed	p.E260*	0.000	69	0%	37	43.2%	0	-	-	-	-	HMMPfam_NACHT,superfamily_SSF52540
TUB	7275	genome.wustl.edu	37	11	8118305	8118305	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003320.4	+1	reviewed	p.L268	0.523	99	0%	57	42.1%	3	33.3%	-	-	-	NULL
TUB	7275	genome.wustl.edu	37	11	8122516	8122516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003320.4	+1	reviewed	p.K508N	1.000	329	0%	91	41.8%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tub,superfamily_Tubby_C,PatternScan_TUB_1
STK33	65975	genome.wustl.edu	37	11	8457647	8457647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030906.2	-1	validated	p.E329D	0.998	63	0%	45	24.4%	5	20%	benign(0.023)	tolerated(0.22)	neutral(0.043)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DENND5A	23258	genome.wustl.edu	37	11	9225789	9225789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015213.2	-1	validated	p.T123A	1.000	112	0%	40	45%	8	50%	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_uDENN,HMMSmart_SM00800
SWAP70	23075	genome.wustl.edu	37	11	9759801	9759801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015055.2	+1	validated	p.K374N	1.000	81	0%	47	44.7%	38	47.3%	possibly_damaging(0.707)	tolerated(0.07)	deleterious(0.574)	NULL
SBF2	81846	genome.wustl.edu	37	11	9861174	9861174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030962.3	-1	reviewed	p.L1109S	1.000	96	0%	103	44.7%	10	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_(Phosphotyrosine protein) phosphatases II
SBF2	81846	genome.wustl.edu	37	11	9867113	9867113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030962.3	-1	reviewed	p.R1037C	1.000	162	0%	123	47.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SBF2	81846	genome.wustl.edu	37	11	9871708	9871708	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030962.3	-1	reviewed	p.R890*	1.000	89	0%	28	50%	3	33.3%	-	-	-	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
SBF2	81846	genome.wustl.edu	37	11	9989919	9989919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030962.3	-1	reviewed	p.K523N	1.000	400	0%	141	44.7%	3	33.3%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
AMPD3	272	genome.wustl.edu	37	11	10515030	10515030	+	Silent	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000480.2	+1	reviewed	p.V367	1.000	97	0%	17	35.3%	0	-	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
USP47	55031	genome.wustl.edu	37	11	11919204	11919204	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017944.3	+1	validated	p.L118R	1.000	101	0%	112	49.1%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP47	55031	genome.wustl.edu	37	11	11941938	11941938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017944.3	+1	validated	p.R304I	1.000	129	0%	48	52.1%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
MICALCL	84953	genome.wustl.edu	37	11	12316121	12316121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032867.2	+1	validated	p.E381D	0.958	150	0%	71	18.3%	0	-	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	NULL
PARVA	55742	genome.wustl.edu	37	11	12525924	12525924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018222.3	+1	provisional	p.R202H	1.000	362	0%	62	35.5%	68	41.1%	benign(0.228)	deleterious(0.01)	neutral(0.428)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
PTH	5741	genome.wustl.edu	37	11	13514033	13514033	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000315.2	-1	reviewed	p.V89	0.003	243	0%	78	50%	0	-	-	-	-	HMMPfam_Parathyroid
FAR1	84188	genome.wustl.edu	37	11	13743342	13743342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032228.5	+1	validated	p.S398Y	1.000	164	0%	100	50%	36	41.6%	possibly_damaging(0.778)	deleterious(0.02)	deleterious(0.674)	HMMPfam_Sterile
COPB1	1315	genome.wustl.edu	37	11	14501200	14501200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144061.1	-1	reviewed	p.R425C	1.000	67	0%	70	51.4%	58	5.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
COPB1	1315	genome.wustl.edu	37	11	14515330	14515330	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144061.1	-1	reviewed	p.R117*	1.000	94	0%	70	55.7%	29	6.8%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
PDE3B	5140	genome.wustl.edu	37	11	14810772	14810772	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000922.3	+1	validated	p.E467*	1.000	117	0%	15	46.7%	0	-	-	-	-	NULL
PDE3B	5140	genome.wustl.edu	37	11	14840702	14840702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000922.3	+1	validated	p.K585T	0.999	113	0%	55	52.7%	0	-	benign(0.024)	deleterious(0.02)	neutral(0.384)	NULL
PDE3B	5140	genome.wustl.edu	37	11	14856536	14856536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000922.3	+1	validated	p.R739C	1.000	204	1%	59	50.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE3B	5140	genome.wustl.edu	37	11	14865418	14865418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000922.3	+1	validated	p.S789L	0.999	421	0%	328	44.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
INSC	387755	genome.wustl.edu	37	11	15262010	15262010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031853.3	+1	provisional	p.E518K	0.995	270	0%	31	51.6%	0	-	benign(0.005)	tolerated(0.65)	neutral(0.003)	HMMSmart_SM00185,superfamily_ARM repeat
INSC	387755	genome.wustl.edu	37	11	15267579	15267579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031853.3	+1	provisional	p.F578S	1.000	305	0%	61	44.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ABCC8	6833	genome.wustl.edu	37	11	17418528	17418528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000352.3	-1	reviewed	p.R1352C	1.000	104	0%	40	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC8	6833	genome.wustl.edu	37	11	17430062	17430062	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000352.3	-1	reviewed	p.I899	1.000	64	0%	36	44.4%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC8	6833	genome.wustl.edu	37	11	17436060	17436060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000352.3	-1	reviewed	p.R797W	0.999	167	0%	80	50%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC8	6833	genome.wustl.edu	37	11	17464736	17464736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000352.3	-1	reviewed	p.R486W	1.000	85	0%	30	20%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
KCNC1	3746	genome.wustl.edu	37	11	17757837	17757837	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112741.1	+1	reviewed	p.I96	1.000	22	0%	13	61.5%	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
ST13P5	144106	genome.wustl.edu	37	11	18283773	18283773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000391478	+1	known	p.E82G	1.000	17	0%	37	54.1%	16	0%	-	-	-	NULL
ST13P5	144106	genome.wustl.edu	37	11	18284375	18284375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000391478	+1	known	p.G283C	0.995	6	0.000	22	0.545	0	-	-	-	-	NULL
SAA1	6288	genome.wustl.edu	37	11	18291393	18291393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000331.4	+1	reviewed	p.E120D	0.047	195	0%	76	42.1%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_SAA,HMMSmart_SM00197
TSG101	7251	genome.wustl.edu	37	11	18503318	18503318	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006292.2	-1	reviewed	p.I314	0.999	398	0%	231	40.3%	133	45.1%	-	-	-	NULL
UEVLD	55293	genome.wustl.edu	37	11	18553960	18553960	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040697.1	-1	validated	p.V441	0.980	178	0%	197	42.6%	9	44.4%	-	-	-	HMMPfam_Ldh_1_C,superfamily_LDH C-terminal domain-like
ENSG00000247595	0	genome.wustl.edu	37	11	18631732	18631732	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000501599	+1	known	NULL	0.007	4	0.000	29	0.448	0	-	-	-	-	-
TMEM86A	144110	genome.wustl.edu	37	11	18722737	18722737	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153347.1	+1	provisional	p.F93	0.967	78	0%	34	20.6%	5	0%	-	-	-	HMMPfam_YhhN
MRGPRX2	117194	genome.wustl.edu	37	11	19077884	19077884	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054030.2	-1	provisional	p.L22	0.000	80	0%	32	56.2%	0	-	-	-	-	superfamily_SSF81321
E2F8	79733	genome.wustl.edu	37	11	19251866	19251866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024680.2	-1	validated	p.S427Y	1.000	91	0%	87	46%	12	58.3%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
NAV2	89797	genome.wustl.edu	37	11	19955099	19955099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182964.5	+1	validated	p.E437K	0.998	38	0%	30	46.7%	4	0%	possibly_damaging(0.719)	tolerated(0.12)	deleterious(0.521)	NULL
NAV2	89797	genome.wustl.edu	37	11	20067110	20067110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182964.5	+1	validated	p.N1266D	1.000	107	0%	28	67.9%	12	33.3%	probably_damaging(0.987)	tolerated(1)	neutral(0.436)	NULL
DBX1	120237	genome.wustl.edu	37	11	20180780	20180780	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029865.1	-1	provisional	p.F142	0.977	230	0%	109	48.6%	0	-	-	-	-	NULL
PRMT3	10196	genome.wustl.edu	37	11	20424475	20424475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005788.3	+1	validated	p.R239Q	1.000	273	0%	209	45.9%	20	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SLC6A5	9152	genome.wustl.edu	37	11	20652325	20652325	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004211.3	+1	reviewed	p.E530*	1.000	224	0%	75	45.3%	0	-	-	-	-	HMMPfam_SNF
SLC6A5	9152	genome.wustl.edu	37	11	20668388	20668388	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004211.3	+1	reviewed	p.R660	0.999	329	0%	105	13.3%	0	-	-	-	-	HMMPfam_SNF
SLC6A5	9152	genome.wustl.edu	37	11	20673890	20673890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004211.3	+1	reviewed	p.R709H	1.000	203	0%	172	52.9%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_SNF
SLC6A5	9152	genome.wustl.edu	37	11	20676387	20676387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004211.3	+1	reviewed	p.K789N	1.000	107	0%	51	47.1%	0	-	possibly_damaging(0.821)	deleterious(0)	deleterious(0.755)	NULL
NELL1	4745	genome.wustl.edu	37	11	20949932	20949932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006157.3	+1	reviewed	p.V302M	1.000	167	0%	17	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00215
ANO5	203859	genome.wustl.edu	37	11	22301244	22301244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213599.2	+1	reviewed	p.S892Y	0.007	102	0%	55	45.5%	2	0%	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
SLC17A6	57084	genome.wustl.edu	37	11	22399016	22399016	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020346.2	+1	validated	p.F493L	1.000	91	0%	51	45.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_MFS_gen_substrate_transporter
ANO3	63982	genome.wustl.edu	37	11	26484636	26484636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031418.2	+1	validated	p.R125C	1.000	86	0%	15	33.3%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
ANO3	63982	genome.wustl.edu	37	11	26568996	26568996	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031418.2	+1	validated	p.F396	1.000	1039	0%	128	36.7%	0	-	-	-	-	NULL
MUC15	143662	genome.wustl.edu	37	11	26584674	26584674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135091.1	-1	validated	p.R305I	1.000	43	0%	29	55.2%	0	-	unknown(0)	deleterious(0)	-	NULL
LOC100288909	100288909	genome.wustl.edu	37	11	27016133	27016133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343073.1	-1	model	p.E151K	0.979	61	0%	34	50%	1	100%	-	-	-	NULL
CCDC34	91057	genome.wustl.edu	37	11	27362372	27362372	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030771.1	-1	validated	p.Q260*	1.000	211	0%	237	43.5%	25	8%	-	-	-	NULL
CCDC34	91057	genome.wustl.edu	37	11	27371947	27371947	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030771.1	-1	validated	p.E180*	1.000	391	0.3%	322	42.2%	33	15.1%	-	-	-	NULL
LGR4	55366	genome.wustl.edu	37	11	27390495	27390495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018490.2	-1	validated	p.G592D	1.000	137	0%	75	44%	6	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
LGR4	55366	genome.wustl.edu	37	11	27401879	27401879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018490.2	-1	validated	p.R304C	1.000	78	0%	30	63.3%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF52047,superfamily_SSF52058
EIF3M	10480	genome.wustl.edu	37	11	32610588	32610588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006360.3	+1	provisional	p.K115N	1.000	315	0%	122	48.4%	277	35%	benign(0.004)	tolerated(0.39)	neutral(0.016)	NULL
CCDC73	493860	genome.wustl.edu	37	11	32624404	32624404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008391.2	-1	validated	p.K1065Q	1.000	415	0%	452	41.8%	2	50%	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
QSER1	79832	genome.wustl.edu	37	11	32955397	32955397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076786.1	+1	provisional	p.L736I	1.000	89	0%	37	37.8%	11	54.5%	possibly_damaging(0.949)	deleterious(0.04)	deleterious(0.742)	NULL
QSER1	79832	genome.wustl.edu	37	11	32975578	32975578	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076786.1	+1	provisional	p.G1322	0.999	210	0%	158	50%	12	50%	-	-	-	NULL
TCP11L1	55346	genome.wustl.edu	37	11	33078696	33078696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145541.1	+1	validated	p.A111V	1.000	267	0%	157	42.7%	1	100%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Tcp11
HIPK3	10114	genome.wustl.edu	37	11	33308096	33308096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005734.3	+1	validated	p.N46D	1.000	136	0%	97	46.4%	5	60%	benign(0.009)	tolerated(0.24)	neutral(0.038)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33565738	33565738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012194.1	+1	validated	p.S580A	0.000	305	0%	117	46.2%	0	-	benign(0)	tolerated(1)	-	NULL
C11orf41	25758	genome.wustl.edu	37	11	33566871	33566871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012194.1	+1	validated	p.K820R	0.001	79	0%	24	45.8%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
C11orf41	25758	genome.wustl.edu	37	11	33689439	33689439	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012194.1	+1	validated	p.I1769	0.811	28	0%	17	41.2%	0	-	-	-	-	NULL
NAT10	55226	genome.wustl.edu	37	11	34158270	34158270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024662.2	+1	validated	p.E704K	1.000	130	0%	94	34%	43	30.2%	possibly_damaging(0.675)	deleterious(0.01)	deleterious(0.645)	superfamily_Acyl-CoA N-acyltransferases (Nat)
NAT10	55226	genome.wustl.edu	37	11	34167729	34167729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024662.2	+1	validated	p.R1023Q	0.995	163	0%	247	44.9%	83	39.7%	unknown(0)	tolerated(0.18)	-	NULL
ELF5	2001	genome.wustl.edu	37	11	34501823	34501823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198381.1	-1	reviewed	p.R247Q	1.000	244	0%	147	38.1%	3	0%	probably_damaging(0.997)	tolerated(0.26)	deleterious(0.500)	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
EHF	26298	genome.wustl.edu	37	11	34673286	34673286	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012153.4	+1	validated	p.L160	0.030	430	0%	91	29.7%	33	66.6%	-	-	-	NULL
PDHX	8050	genome.wustl.edu	37	11	34969146	34969146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003477.2	+1	reviewed	p.K112T	1.000	288	0%	104	41.3%	33	51.5%	possibly_damaging(0.626)	deleterious(0)	deleterious(0.662)	HMMPfam_Biotin_lipoyl,superfamily_Hybrid_motif
ENSG00000186082	0	genome.wustl.edu	37	11	35882455	35882455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000333983	-1	known	p.L200I	1.000	22	0%	24	37.5%	0	-	-	-	-	HMMPfam_Filament
RAG1	5896	genome.wustl.edu	37	11	36596004	36596004	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000448.2	+1	reviewed	p.E384*	0.582	49	0%	19	57.9%	0	-	-	-	-	NULL
RAG1	5896	genome.wustl.edu	37	11	36597629	36597629	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000448.2	+1	reviewed	p.T925	1.000	238	0%	64	40.6%	0	-	-	-	-	NULL
RAG2	5897	genome.wustl.edu	37	11	36614556	36614556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000536.3	-1	reviewed	p.A388V	1.000	277	0%	199	49.2%	0	-	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	HMMPfam_RAG2
LOC399881	399881	genome.wustl.edu	37	11	43283665	43283665	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_040375.2	-1	model	NULL	0.997	37	0%	31	32.3%	0	-	-	-	-	-
TTC17	55761	genome.wustl.edu	37	11	43513659	43513659	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018259.5	+1	validated	p.I1080	0.875	408	0%	42	19%	27	3.7%	-	-	-	HMMSmart_TPR,superfamily_SSF48452
MIR129-2	406918	genome.wustl.edu	37	11	43602958	43602958	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000362207	+1	known	NULL	1.000	156	0%	34	11.8%	0	-	-	-	-	-
ALKBH3	221120	genome.wustl.edu	37	11	43913679	43913679	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139178.3	+1	validated	p.H153	1.000	179	0%	146	43.8%	0	-	-	-	-	NULL
ACCSL	390110	genome.wustl.edu	37	11	44069847	44069847	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031854.2	+1	validated	p.A87	0.000	49	0%	22	54.5%	0	-	-	-	-	NULL
ACCSL	390110	genome.wustl.edu	37	11	44071670	44071670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031854.2	+1	validated	p.R188I	0.998	157	0%	67	47.8%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	superfamily_PLP-dependent transferases
EXT2	2132	genome.wustl.edu	37	11	44228434	44228434	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000401.3	+1	reviewed	p.I542	0.998	228	0%	85	52.9%	64	43.7%	-	-	-	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases
CHST1	8534	genome.wustl.edu	37	11	45671803	45671803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003654.4	-1	validated	p.R224Q	0.870	17	0%	12	66.7%	7	28.5%	probably_damaging(0.958)	tolerated(0.14)	deleterious(0.651)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CREB3L1	90993	genome.wustl.edu	37	11	46299676	46299676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052854.2	+1	validated	p.L5S	0.995	17	0%	15	53.3%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46529865	46529865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017749.2	-1	validated	p.D649Y	1.000	213	0%	58	53.4%	12	58.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CKAP5	9793	genome.wustl.edu	37	11	46780967	46780967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008938.1	-1	validated	p.P1474S	0.999	147	0%	54	48.1%	107	50.4%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
CKAP5	9793	genome.wustl.edu	37	11	46799007	46799007	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008938.1	-1	validated	p.T948	0.824	264	0%	104	39.4%	36	47.2%	-	-	-	superfamily_ARM repeat
CKAP5	9793	genome.wustl.edu	37	11	46799692	46799692	+	Silent	SNP	G	G	T	rs147523907	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008938.1	-1	validated	p.I915	1.000	191	0%	76	34.2%	38	31.5%	-	-	-	superfamily_ARM repeat
MADD	8567	genome.wustl.edu	37	11	47296161	47296161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003682.3	+1	reviewed	p.R37Q	1.000	60	0%	53	41.5%	8	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_uDENN,HMMSmart_SM00800
FAM180B	399888	genome.wustl.edu	37	11	47609325	47609325	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000356737	+1	known	p.S77	0.096	8	0.000	13	0.615	0	-	-	-	-	NULL
FNBP4	23360	genome.wustl.edu	37	11	47774534	47774534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015308.2	-1	validated	p.S191P	0.624	207	0%	198	48%	19	52.6%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
LOC340970	340970	genome.wustl.edu	37	11	49012735	49012735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343062.1	-1	model	p.E138D	0.267	42	0%	21	19%	0	-	-	-	-	NULL
LOC340970	340970	genome.wustl.edu	37	11	49013140	49013140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343062.1	-1	model	p.E98D	0.768	104	0%	76	48.7%	0	-	-	-	-	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box
LOC283116	283116	genome.wustl.edu	37	11	49055866	49055866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_208043.4	+1	model	p.L226V	0.001	489	0%	485	39%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
FOLH1	2346	genome.wustl.edu	37	11	49196523	49196523	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004476.1	-1	reviewed	p.V342	1.000	153	0%	138	58%	14	14.2%	-	-	-	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases
ENSG00000219061	0	genome.wustl.edu	37	11	49857326	49857326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000405176	-1	known	p.S249Y	0.010	16	0%	12	50%	0	-	-	-	-	NULL
OR4C12	283093	genome.wustl.edu	37	11	50004023	50004023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005270.2	-1	validated	p.K5N	0.016	56	0%	20	25%	0	-	benign(0)	tolerated(1)	-	NULL
OR4C46	119749	genome.wustl.edu	37	11	51515805	51515805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004703.1	+1	provisional	p.F175C	0.024	285	0%	101	47.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_SSF81321
LOC440041	440041	genome.wustl.edu	37	11	55062972	55062972	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_016142.3	-1	model	NULL	0.039	117	0%	27	22.2%	0	-	-	-	-	-
ENSG00000181943	0	genome.wustl.edu	37	11	55258873	55258873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314657	+1	known	p.S52*	0.727	101	0%	23	39.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000181943	0	genome.wustl.edu	37	11	55258943	55258943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314657	+1	known	p.K75N	0.004	191	0%	43	44.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C15	81309	genome.wustl.edu	37	11	55322199	55322199	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001920.1	+1	provisional	p.L139	0.000	271	0%	40	30%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C15	81309	genome.wustl.edu	37	11	55322361	55322361	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001920.1	+1	provisional	p.L193	0.100	432	0%	61	27.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C15	81309	genome.wustl.edu	37	11	55322686	55322686	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001920.1	+1	provisional	p.L302	0.162	977	0%	161	15.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C16	219428	genome.wustl.edu	37	11	55340064	55340064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004701.2	+1	validated	p.S154Y	0.490	184	0%	57	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4P4	81300	genome.wustl.edu	37	11	55406038	55406038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004124.1	+1	provisional	p.L69F	0.001	371	0%	70	55.7%	0	-	probably_damaging(0.988)	tolerated(0.08)	deleterious(0.738)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C6	219432	genome.wustl.edu	37	11	55432736	55432736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004704.1	+1	provisional	p.M32V	0.000	444	0%	77	46.8%	0	-	benign(0.07)	tolerated(0.83)	neutral(0.005)	superfamily_Family A G protein-coupled receptor-like
OR4C6	219432	genome.wustl.edu	37	11	55433483	55433483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004704.1	+1	provisional	p.N281H	1.000	199	0%	21	47.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5D13	390142	genome.wustl.edu	37	11	55541624	55541624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001967.1	+1	provisional	p.Q237H	0.011	232	0%	39	33.3%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D14	219436	genome.wustl.edu	37	11	55563865	55563865	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004735.1	+1	provisional	p.V278	0.000	130	0%	54	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703124	55703124	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006637.1	-1	reviewed	p.T251	0.004	144	0%	25	32%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5F1	338674	genome.wustl.edu	37	11	55761178	55761178	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003697.1	-1	provisional	p.K308	0.003	75	0%	16	43.8%	0	-	-	-	-	superfamily_SSF81321
OR8I2	120586	genome.wustl.edu	37	11	55860867	55860867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003750.1	+1	provisional	p.F28L	0.001	254	0%	58	24.1%	0	-	possibly_damaging(0.556)	deleterious(0.03)	deleterious(0.554)	superfamily_Family A G protein-coupled receptor-like
OR8J3	81168	genome.wustl.edu	37	11	55905177	55905177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004064.1	-1	provisional	p.F6L	0.002	102	0%	90	38.9%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56019951	56019951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004747.1	+1	provisional	p.F92L	0.038	179	0%	94	35.1%	0	-	benign(0.31)	deleterious(0.05)	neutral(0.442)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56020217	56020217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004747.1	+1	provisional	p.A181D	0.002	368	0%	124	46.8%	0	-	benign(0.281)	tolerated(0.19)	neutral(0.136)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043239	56043239	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004745.1	+1	provisional	p.L42*	0.004	107	0%	55	47.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR8K3	219473	genome.wustl.edu	37	11	56086641	56086641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005202.1	+1	provisional	p.L287V	0.462	138	0%	65	12.3%	0	-	benign(0.015)	tolerated(0.05)	neutral(0.346)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000230416	0	genome.wustl.edu	37	11	56216817	56216817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000415874	+1	known	p.L224M	0.005	154	0%	19	36.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M3	219482	genome.wustl.edu	37	11	56237763	56237763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004742.1	-1	provisional	p.F71L	0.009	150	0%	34	47.1%	0	-	benign(0.07)	deleterious(0)	neutral(0.450)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M3	219482	genome.wustl.edu	37	11	56237958	56237958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004742.1	-1	provisional	p.D6N	0.065	55	0%	14	50%	0	-	benign(0.001)	tolerated(0.5)	neutral(0.010)	superfamily_Family A G protein-coupled receptor-like
OR5M11	219487	genome.wustl.edu	37	11	56309944	56309944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005245.1	-1	provisional	p.D264Y	0.160	200	0%	49	12.2%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M11	219487	genome.wustl.edu	37	11	56310489	56310489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005245.1	-1	provisional	p.S82L	0.693	246	0%	42	40.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5M1	390168	genome.wustl.edu	37	11	56380184	56380184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004740.1	-1	provisional	p.E265D	0.001	183	0%	50	36%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AR1	219493	genome.wustl.edu	37	11	56431244	56431244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004730.1	+1	provisional	p.F28S	0.998	282	0%	48	52.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF81321
OR5AR1	219493	genome.wustl.edu	37	11	56431875	56431875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004730.1	+1	provisional	p.F238L	0.986	312	0%	51	41.2%	0	-	benign(0.294)	tolerated(0.06)	neutral(0.413)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AR1	219493	genome.wustl.edu	37	11	56432087	56432087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004730.1	+1	provisional	p.S309Y	0.088	68	0%	22	31.8%	0	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	superfamily_SSF81321
OR9G1	390174	genome.wustl.edu	37	11	56468773	56468773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005213.1	+1	provisional	p.L304I	0.000	169	0%	72	36.1%	0	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56510597	56510597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005284.1	-1	provisional	p.I231L	0.000	156	0%	68	47.1%	0	-	benign(0.119)	tolerated(0.16)	neutral(0.069)	HMMPfam_7tm_1,superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56510729	56510729	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005284.1	-1	provisional	p.N187H	0.994	163	0%	55	32.7%	0	-	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	HMMPfam_7tm_1,superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56510789	56510789	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005284.1	-1	provisional	p.G167*	0.195	127	0%	41	14.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TNKS1BP1	85456	genome.wustl.edu	37	11	57081319	57081319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033396.2	-1	validated	p.E281D	0.453	26	0%	39	43.6%	25	36%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
SSRP1	6749	genome.wustl.edu	37	11	57094345	57094345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003146.2	-1	reviewed	p.K630N	1.000	99	0%	155	32.3%	360	43%	unknown(0)	tolerated(0.36)	-	NULL
SSRP1	6749	genome.wustl.edu	37	11	57095243	57095243	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003146.2	-1	reviewed	p.T575	0.001	46	0%	99	36.4%	333	49.8%	-	-	-	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
SSRP1	6749	genome.wustl.edu	37	11	57098348	57098348	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003146.2	-1	reviewed	p.K426T	1.000	44	0%	182	45.1%	378	51.3%	possibly_damaging(0.512)	deleterious(0.01)	deleterious(0.578)	NULL
PRG3	10394	genome.wustl.edu	37	11	57147251	57147251	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006093.3	-1	validated	p.E31*	0.010	16	0%	67	49.3%	0	-	-	-	-	NULL
SLC43A1	8501	genome.wustl.edu	37	11	57263628	57263628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003627.4	-1	provisional	p.D190N	0.998	97	0%	35	57.1%	0	-	benign(0.31)	tolerated(0.07)	neutral(0.415)	superfamily_MFS general substrate transporter
SMTNL1	219537	genome.wustl.edu	37	11	57310472	57310472	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105565.1	+1	provisional	p.K137N	0.000	75	0%	106	44.3%	0	-	possibly_damaging(0.64)	tolerated(0.13)	deleterious(0.477)	NULL
UBE2L6	9246	genome.wustl.edu	37	11	57322066	57322066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004223.3	-1	reviewed	p.N52D	0.007	100	0%	65	53.8%	32	9.3%	benign(0.003)	deleterious(0)	neutral(0.445)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
CLP1	10978	genome.wustl.edu	37	11	57427100	57427100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006831.2	+1	validated	p.R51Q	1.000	181	0%	70	22.9%	13	30.7%	benign(0.258)	tolerated(0.34)	neutral(0.050)	NULL
ZDHHC5	25921	genome.wustl.edu	37	11	57466552	57466552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015457.2	+1	validated	p.E548D	1.000	46	0%	21	52.4%	75	45.3%	possibly_damaging(0.662)	deleterious(0.03)	deleterious(0.599)	NULL
TMX2	51075	genome.wustl.edu	37	11	57507621	57507621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015959.2	+1	validated	p.K265N	1.000	73	0%	83	42.2%	77	29.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BTBD18	643376	genome.wustl.edu	37	11	57511990	57511990	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145101.1	-1	validated	p.L585	0.394	155	0%	81	44.4%	0	-	-	-	-	NULL
OR6Q1	219952	genome.wustl.edu	37	11	57798442	57798442	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005186.2	+1	validated	p.K6N	0.005	242	0%	70	40%	0	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	superfamily_Family A G protein-coupled receptor-like
OR6Q1	219952	genome.wustl.edu	37	11	57798670	57798670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005186.2	+1	validated	p.K82N	0.999	550	0%	149	40.9%	0	-	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1S2	219958	genome.wustl.edu	37	11	57971601	57971601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004459.1	-1	validated	p.N18S	0.983	238	0%	98	31.6%	0	-	possibly_damaging(0.848)	deleterious(0.01)	deleterious(0.731)	superfamily_SSF81321
OR10Q1	219960	genome.wustl.edu	37	11	57996153	57996153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004471.2	-1	validated	p.F65L	0.989	370	0%	79	44.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B3	441608	genome.wustl.edu	37	11	58170139	58170139	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005469.1	-1	validated	p.I248	0.936	204	0%	50	40%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5B3	441608	genome.wustl.edu	37	11	58170627	58170627	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005469.1	-1	validated	p.E86*	0.000	196	0%	59	50.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5B12	390191	genome.wustl.edu	37	11	58207139	58207139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004733.2	-1	validated	p.F162L	0.032	253	0%	67	40.3%	0	-	benign(0.186)	tolerated(0.22)	neutral(0.060)	HMMPfam_7tm_1,superfamily_SSF81321
GLYAT	10249	genome.wustl.edu	37	11	58491925	58491925	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201648.2	-1	validated	p.E15	0.978	105	0%	21	42.9%	0	-	-	-	-	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Gly_acyl_tr_N
GLYATL1	92292	genome.wustl.edu	37	11	58723340	58723340	+	Missense_Mutation	SNP	G	G	A	rs145479301	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080661.2	+1	provisional	p.R281Q	0.000	174	0%	45	44.4%	1	0%	benign(0.033)	tolerated(0.38)	neutral(0.019)	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl_CoA_acyltransferase
LOC643637	643637	genome.wustl.edu	37	11	58817663	58817663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343101.1	+1	model	p.S159P	0.000	52	0%	26	50%	1	0%	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM111B	374393	genome.wustl.edu	37	11	58892737	58892737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198947.3	+1	validated	p.K389N	0.016	38	0%	34	47.1%	11	36.3%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
MPEG1	219972	genome.wustl.edu	37	11	58978213	58978213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039396.1	-1	validated	p.Q709R	0.000	242	0%	87	42.5%	1	0%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
MPEG1	219972	genome.wustl.edu	37	11	58979329	58979329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039396.1	-1	validated	p.A337D	0.994	99	0%	65	12.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MACPF,HMMSmart_MACPF
OR5A1	219982	genome.wustl.edu	37	11	59211014	59211014	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004728.1	+1	provisional	p.R125*	0.806	366	0%	71	40.8%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR4D6	219983	genome.wustl.edu	37	11	59224964	59224964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004708.1	+1	provisional	p.F177L	0.998	535	0%	165	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D10	390197	genome.wustl.edu	37	11	59245542	59245542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004705.1	+1	provisional	p.L214F	0.000	213	0%	83	43.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4D11	219986	genome.wustl.edu	37	11	59271089	59271089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004706.1	+1	provisional	p.F14S	0.999	108	0%	61	21.3%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_SSF81321
PATL1	219988	genome.wustl.edu	37	11	59406550	59406550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152716.2	-1	validated	p.Q754H	1.000	156	0%	126	38.9%	29	37.9%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
STX3	6809	genome.wustl.edu	37	11	59556412	59556412	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004177.4	+1	reviewed	p.K94T	0.996	166	0%	112	37.5%	58	50%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_Syntaxin,HMMSmart_SM00503,superfamily_t-snare proteins
PLAC1L	219990	genome.wustl.edu	37	11	59807947	59807947	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173801.3	+1	provisional	p.V5	0.000	182	0%	66	59.1%	0	-	-	-	-	NULL
PLAC1L	219990	genome.wustl.edu	37	11	59814450	59814450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173801.3	+1	provisional	p.E127D	0.000	190	0%	108	48.1%	0	-	benign(0.008)	tolerated(0.11)	neutral(0.272)	NULL
MS4A4A	51338	genome.wustl.edu	37	11	60048169	60048169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148975.1	+1	reviewed	p.R7S	0.002	168	0%	32	53.1%	2	0%	benign(0.13)	deleterious(0)	neutral(0.456)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60164095	60164095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032597.3	+1	validated	p.T15I	0.000	231	0%	48	54.2%	0	-	benign(0.04)	tolerated(0.27)	neutral(0.036)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60183514	60183514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032597.3	+1	validated	p.Q358R	0.000	258	0%	31	51.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60184292	60184292	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032597.3	+1	validated	p.P617	0.000	69	0%	30	43.3%	0	-	-	-	-	NULL
MS4A5	64232	genome.wustl.edu	37	11	60197294	60197294	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023945.2	+1	reviewed	p.I49	0.958	85	0%	75	46.7%	0	-	-	-	-	NULL
MS4A8B	83661	genome.wustl.edu	37	11	60468341	60468341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031457.1	+1	reviewed	p.S3L	0.003	538	0.2%	88	87.5%	0	-	benign(0.429)	tolerated(0.08)	neutral(0.440)	NULL
MS4A15	219995	genome.wustl.edu	37	11	60541390	60541390	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098835.1	+1	validated	p.F193	0.998	330	0%	97	49.5%	0	-	-	-	-	PatternScan_IG_MHC,HMMPfam_CD20
TMEM132A	54972	genome.wustl.edu	37	11	60703526	60703526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017870.3	+1	reviewed	p.V741A	0.978	16	0%	25	52%	2	0%	possibly_damaging(0.94)	tolerated(0.45)	neutral(0.397)	NULL
SLC15A3	51296	genome.wustl.edu	37	11	60709541	60709541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016582.2	-1	validated	p.S358Y	0.001	209	0%	108	14.8%	7	0%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
DDB1	1642	genome.wustl.edu	37	11	61081956	61081956	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001923.3	-1	validated	p.I471	1.000	60	0%	22	40.9%	179	41.8%	-	-	-	NULL
PPP1R32	220004	genome.wustl.edu	37	11	61252177	61252177	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145017.2	+1	validated	p.F133	0.504	22	0%	20	55%	0	-	-	-	-	NULL
INCENP	3619	genome.wustl.edu	37	11	61897923	61897923	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040694.1	+1	validated	p.I308	0.006	33	0%	12	66.7%	29	55.1%	-	-	-	NULL
SCGB2A1	4246	genome.wustl.edu	37	11	61977971	61977971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002407.2	+1	validated	p.E48*	0.000	130	0%	84	42.9%	276	19.9%	-	-	-	HMMPfam_Uteroglobin,superfamily_Secretoglobin
AHNAK	79026	genome.wustl.edu	37	11	62288188	62288188	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001620.1	-1	validated	p.I4567	0.062	135	0%	123	38.2%	49	53%	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62296599	62296599	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001620.1	-1	validated	p.L1764V	0.000	102	0%	157	47.8%	13	30.7%	possibly_damaging(0.882)	tolerated(0.31)	neutral(0.371)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62299839	62299839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001620.1	-1	validated	p.D684N	0.001	139	0%	201	46.3%	7	57.1%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	NULL
GANAB	23193	genome.wustl.edu	37	11	62398178	62398178	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198335.2	-1	validated	p.W449*	1.000	122	0%	56	39.3%	187	10.6%	-	-	-	HMMPfam_Glyco_hydro_31
UBXN1	51035	genome.wustl.edu	37	11	62445741	62445741	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000436354	-1	known	p.K120	0.014	200	0%	166	14.5%	0	-	-	-	-	NULL
TTC9C	283237	genome.wustl.edu	37	11	62502898	62502898	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173810.3	+1	provisional	p.E95*	1.000	43	0%	74	39.2%	19	26.3%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
WDR74	54663	genome.wustl.edu	37	11	62600449	62600449	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018093.2	-1	validated	p.K378T	0.033	132	0%	89	34.8%	31	64.5%	benign(0.042)	deleterious(0.02)	neutral(0.386)	NULL
CHRM1	1128	genome.wustl.edu	37	11	62678424	62678424	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000738.2	-1	reviewed	p.F50C	1.000	250	0%	99	47.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC22A8	9376	genome.wustl.edu	37	11	62760913	62760913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000311438	-1	known	p.S500L	0.014	267	0.4%	54	53.7%	0	-	-	-	-	NULL
SLC22A25	387601	genome.wustl.edu	37	11	62984929	62984929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199352.3	-1	validated	p.F229L	0.000	314	0%	42	42.9%	0	-	benign(0.008)	tolerated(0.74)	neutral(0.002)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A10	387775	genome.wustl.edu	37	11	63069800	63069800	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039752.3	+1	validated	e7-1	0.594	419	0%	66	40.9%	0	-	-	-	-	-
SLC22A9	114571	genome.wustl.edu	37	11	63176281	63176281	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080866.2	+1	validated	p.F511V	0.003	351	0%	75	42.7%	0	-	benign(0.051)	deleterious(0.02)	neutral(0.386)	superfamily_MFS general substrate transporter
HRASLS5	117245	genome.wustl.edu	37	11	63233626	63233626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054108.3	-1	validated	p.H235Y	1.000	281	0%	64	35.9%	0	-	possibly_damaging(0.8)	deleterious(0.02)	deleterious(0.684)	HMMPfam_NC
RTN3	10313	genome.wustl.edu	37	11	63487586	63487586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201428.1	+1	validated	p.E519*	0.160	54	0%	94	41.5%	1	100%	-	-	-	NULL
C11orf84	144097	genome.wustl.edu	37	11	63585755	63585755	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138471.1	+1	predicted	p.I175	0.571	64	0%	39	38.5%	74	48.6%	-	-	-	NULL
SLC22A12	116085	genome.wustl.edu	37	11	64361012	64361012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144585.2	+1	reviewed	p.M214I	0.953	46	0%	32	43.8%	0	-	benign(0.023)	tolerated(0.65)	neutral(0.004)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A12	116085	genome.wustl.edu	37	11	64366311	64366311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144585.2	+1	reviewed	p.S329N	0.006	9	0.000	8	0.625	0	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
NRXN2	9379	genome.wustl.edu	37	11	64428231	64428231	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015080.2	-1	reviewed	p.E727*	1.000	19	0%	18	44.4%	0	-	-	-	-	HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
ZFPL1	7542	genome.wustl.edu	37	11	64852222	64852222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006782.3	+1	validated	p.E18K	1.000	62	0%	34	26.5%	102	36.2%	benign(0.33)	tolerated(0.06)	neutral(0.426)	NULL
DPF2	5977	genome.wustl.edu	37	11	65101375	65101375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006268.3	+1	reviewed	p.E6D	1.000	166	0%	190	44.7%	21	28.5%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
EHBP1L1	254102	genome.wustl.edu	37	11	65343872	65343872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099409.1	+1	validated	p.K33N	1.000	8	0.000	17	0.588	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNX32	254122	genome.wustl.edu	37	11	65620387	65620387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152760.2	+1	validated	p.K372N	1.000	102	0%	71	38%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Vps5
YIF1A	10897	genome.wustl.edu	37	11	66055717	66055717	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020470.2	-1	validated	p.F26	1.000	12	0%	17	41.2%	58	48.2%	-	-	-	NULL
BRMS1	25855	genome.wustl.edu	37	11	66109021	66109021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024957.1	-1	reviewed	p.F71L	1.000	108	0%	84	33.3%	137	42.3%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_Sds3
DPP3	10072	genome.wustl.edu	37	11	66259218	66259218	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005700.3	+1	reviewed	p.E327*	1.000	55	0%	69	43.5%	28	21.4%	-	-	-	HMMPfam_Peptidase_M49
DPP3	10072	genome.wustl.edu	37	11	66262733	66262733	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005700.3	+1	reviewed	p.G482	0.999	62	0%	42	26.2%	31	74.1%	-	-	-	HMMPfam_Peptidase_M49
ACTN3	89	genome.wustl.edu	37	11	66318530	66318530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000511191	+1	known	p.E52K	0.027	14	0%	15	66.7%	0	-	unknown(0)	-	-	NULL
RBM14	10432	genome.wustl.edu	37	11	66392422	66392422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006328.3	+1	validated	p.R359S	1.000	56	0%	31	38.7%	31	41.9%	probably_damaging(0.985)	tolerated(0.72)	neutral(0.433)	NULL
C11orf80	79703	genome.wustl.edu	37	11	66583569	66583569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024650.3	+1	validated	p.E412G	0.000	309	0%	212	41.5%	8	37.5%	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	NULL
C11orf72	100505621	genome.wustl.edu	37	11	67372402	67372402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000333139	-1	known	p.L47I	0.000	87	0%	102	41.2%	0	-	unknown(0)	-	-	NULL
ENSG00000206587	0	genome.wustl.edu	37	11	67663167	67663167	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000383860	+1	novel	NULL	0.000	335	0%	162	32.1%	0	-	-	-	-	-
SUV420H1	51111	genome.wustl.edu	37	11	67939171	67939171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017635.3	-1	reviewed	p.R220Q	1.000	99	0%	111	41.4%	11	36.3%	probably_damaging(0.986)	tolerated(0.13)	deleterious(0.687)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
CCND1	595	genome.wustl.edu	37	11	69458697	69458697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053056.2	+1	reviewed	p.A171V	0.005	15	0%	36	44.4%	100	44%	benign(0.023)	tolerated(0.33)	neutral(0.025)	HMMPfam_Cyclin_C,superfamily_Cyclin-like
ANO1	55107	genome.wustl.edu	37	11	69978032	69978032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018043.5	+1	validated	p.M369L	1.000	51	0%	33	45.5%	1	0%	benign(0.122)	deleterious(0.03)	neutral(0.374)	NULL
ANO1	55107	genome.wustl.edu	37	11	69999166	69999166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018043.5	+1	validated	p.H453N	1.000	31	0%	74	44.6%	3	0%	probably_damaging(0.963)	tolerated(0.13)	deleterious(0.658)	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70183486	70183486	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003626.2	+1	reviewed	p.E482*	0.999	125	0%	250	14%	14	7.1%	-	-	-	NULL
PPFIA1	8500	genome.wustl.edu	37	11	70222663	70222663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003626.2	+1	reviewed	p.F1114C	1.000	159	0%	355	45.4%	30	53.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
DHCR7	1717	genome.wustl.edu	37	11	71150111	71150111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001360.2	-1	reviewed	p.F215L	1.000	46	0%	96	51%	37	56.7%	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1
KRTAP5-7	440050	genome.wustl.edu	37	11	71238594	71238594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012503.1	+1	validated	p.S83Y	0.832	196	0%	90	46.7%	0	-	unknown(0)	tolerated(0.32)	-	NULL
KRTAP5-11	440051	genome.wustl.edu	37	11	71293648	71293648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005405.2	-1	validated	p.S79Y	0.611	292	0%	154	46.8%	0	-	unknown(0)	tolerated(0.14)	-	NULL
ENSG00000187811	0	genome.wustl.edu	37	11	71316597	71316597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000343767	-1	known	p.R14C	0.100	39	0%	26	38.5%	0	-	unknown(0)	-	-	NULL
LOC100131539	100131539	genome.wustl.edu	37	11	71527731	71527731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001723234.2	-1	model	p.R244*	0.001	95	0%	191	41.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100131539	100131539	genome.wustl.edu	37	11	71527935	71527935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001723234.2	-1	model	p.L176I	0.000	118	0.8%	210	49%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100131539	100131539	genome.wustl.edu	37	11	71528140	71528140	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001723234.2	-1	model	p.E107	0.014	159	0%	247	34%	0	-	-	-	-	NULL
ENSG00000251143	0	genome.wustl.edu	37	11	71728894	71728894	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000502284	+1	known	NULL	0.000	28	0%	30	50%	0	-	-	-	-	-
NUMA1	4926	genome.wustl.edu	37	11	71734114	71734114	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006185.2	-1	validated	p.A96	1.000	72	0%	67	56.7%	65	41.5%	-	-	-	NULL
CLPB	81570	genome.wustl.edu	37	11	72141378	72141378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030813.3	-1	provisional	p.N145D	1.000	161	0%	31	38.7%	13	69.2%	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PDE2A	5138	genome.wustl.edu	37	11	72294556	72294556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002599.3	-1	validated	p.L552I	1.000	99	0%	191	41.4%	0	-	benign(0.078)	tolerated(0.48)	neutral(0.016)	HMMSmart_SM00065,superfamily_GAF domain-like
P2RY2	5029	genome.wustl.edu	37	11	72945327	72945327	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002564.2	+1	reviewed	p.G41	0.641	286	0.3%	91	59.3%	1	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
P2RY6	5031	genome.wustl.edu	37	11	73007730	73007730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004154.3	+1	reviewed	p.R56Q	0.996	108	0%	57	38.6%	0	-	possibly_damaging(0.801)	deleterious(0.02)	deleterious(0.684)	HMMPfam_7tm_1,superfamily_SSF81321
PAAF1	80227	genome.wustl.edu	37	11	73610259	73610259	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025155.1	+1	provisional	p.K117N	0.994	96	0%	134	46.3%	21	23.8%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
UCP3	7352	genome.wustl.edu	37	11	73717278	73717278	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003356.3	-1	reviewed	p.F91	1.000	39	0%	21	61.9%	0	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
C2CD3	26005	genome.wustl.edu	37	11	73814307	73814307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015531.4	-1	validated	p.F817V	1.000	642	0%	137	45.3%	8	37.5%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
C2CD3	26005	genome.wustl.edu	37	11	73872602	73872602	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015531.4	-1	validated	e3-1	1.000	185	0%	79	44.3%	1	100%	-	-	-	-
P4HA3	283208	genome.wustl.edu	37	11	74015447	74015447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182904.3	-1	reviewed	p.K71E	1.000	128	0.8%	58	53.4%	1	0%	benign(0.244)	tolerated(0.89)	neutral(0.025)	HMMPfam_P4Ha_N
PGM2L1	283209	genome.wustl.edu	37	11	74058371	74058371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173582.3	-1	validated	p.S254L	1.000	100	0%	58	48.3%	14	78.5%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_PGM_PMM_II,superfamily_Phosphoglucomutase first 3 domains
OR2AT4	341152	genome.wustl.edu	37	11	74799969	74799969	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005285.1	-1	provisional	p.Y264D	0.963	110	0%	52	38.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2AT4	341152	genome.wustl.edu	37	11	74800404	74800404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005285.1	-1	provisional	p.I119V	0.999	242	0.4%	88	42%	0	-	benign(0.011)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
GDPD5	81544	genome.wustl.edu	37	11	75160073	75160073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030792.6	-1	validated	p.K221N	0.939	65	0%	89	42.7%	0	-	probably_damaging(0.965)	tolerated(0.15)	deleterious(0.648)	NULL
PRKRIR	5612	genome.wustl.edu	37	11	76063016	76063016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004705.2	-1	provisional	p.R393Q	0.887	67	0%	69	44.9%	49	36.7%	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76239458	76239458	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020193.3	+1	validated	p.Q714	0.867	174	0%	69	55.1%	9	33.3%	-	-	-	NULL
ACER3	55331	genome.wustl.edu	37	11	76696756	76696756	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018367.5	+1	validated	p.L130	1.000	105	0%	146	50.7%	3	33.3%	-	-	-	HMMPfam_aPHC
CAPN5	726	genome.wustl.edu	37	11	76830085	76830085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004055.4	+1	reviewed	p.E393K	1.000	72	0%	37	48.6%	5	20%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
MYO7A	4647	genome.wustl.edu	37	11	76873340	76873340	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000260.3	+1	reviewed	p.I506	1.000	121	0%	62	32.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7A	4647	genome.wustl.edu	37	11	76917233	76917233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000260.3	+1	reviewed	p.D1910Y	1.000	156	0%	59	47.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00295
AQP11	282679	genome.wustl.edu	37	11	77301312	77301312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173039.1	+1	provisional	p.T92I	1.000	34	0%	17	41.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MIP
USP35	57558	genome.wustl.edu	37	11	77924770	77924770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020798.2	+1	provisional	p.D990Y	1.000	122	0%	46	47.8%	10	50%	unknown(0)	tolerated(0.16)	-	NULL
NARS2	79731	genome.wustl.edu	37	11	78270643	78270643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024678.4	-1	validated	p.H179R	1.000	191	0%	97	36.1%	16	43.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
ODZ4	26011	genome.wustl.edu	37	11	78369855	78369855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098816.2	-1	validated	p.L2520I	1.000	60	0%	36	52.8%	3	0%	probably_damaging(0.998)	tolerated(0.27)	deleterious(0.508)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78423709	78423709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098816.2	-1	validated	p.A1291V	0.983	118	0%	46	30.4%	0	-	benign(0.017)	tolerated(0.38)	neutral(0.018)	superfamily_SSF101898,superfamily_TolB_C
PCF11	51585	genome.wustl.edu	37	11	82882929	82882929	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015885.3	+1	validated	p.N1244H	1.000	193	0%	213	53.1%	21	57.1%	possibly_damaging(0.852)	tolerated(0.05)	deleterious(0.673)	NULL
ANKRD42	338699	genome.wustl.edu	37	11	82938846	82938846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182603.2	+1	validated	p.K254T	1.000	320	0%	108	45.4%	2	50%	probably_damaging(0.997)	tolerated(0.75)	neutral(0.468)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CCDC90B	60492	genome.wustl.edu	37	11	82984874	82984874	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021825.3	-1	provisional	p.L168	0.999	201	0%	202	44.6%	73	43.8%	-	-	-	HMMPfam_DUF1640
DLG2	1740	genome.wustl.edu	37	11	83243758	83243758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142699.1	-1	reviewed	p.S729L	1.000	304	0%	74	32.4%	2	100%	benign(0.102)	deleterious(0.05)	neutral(0.353)	superfamily_SH3-domain
SYTL2	54843	genome.wustl.edu	37	11	85435303	85435303	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206927.2	-1	reviewed	p.E733*	0.000	142	0%	92	46.7%	1	100%	-	-	-	NULL
EED	8726	genome.wustl.edu	37	11	85979586	85979586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003797.2	+1	reviewed	p.D317N	1.000	449	0.2%	238	40.8%	14	14.2%	benign(0.07)	tolerated(0.28)	neutral(0.036)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EED	8726	genome.wustl.edu	37	11	85989562	85989562	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003797.2	+1	reviewed	p.R441*	1.000	178	0%	48	35.4%	20	45%	-	-	-	NULL
C11orf73	51501	genome.wustl.edu	37	11	86048484	86048484	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016401.3	+1	validated	p.I111S	1.000	401	0%	119	12.6%	85	9.4%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_DUF775
CCDC81	60494	genome.wustl.edu	37	11	86119194	86119194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021827.4	+1	validated	p.R242Q	1.000	182	0%	99	51.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ME3	10873	genome.wustl.edu	37	11	86176232	86176232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014811.1	-1	reviewed	p.N274H	1.000	454	0%	111	40.5%	17	35.2%	possibly_damaging(0.886)	tolerated(0.14)	deleterious(0.596)	HMMPfam_malic,superfamily_SSF53223
ME3	10873	genome.wustl.edu	37	11	86270833	86270833	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014811.1	-1	reviewed	p.Q72	1.000	135	1.5%	21	47.6%	7	28.5%	-	-	-	superfamily_SSF53223
TMEM135	65084	genome.wustl.edu	37	11	87029263	87029263	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022918.3	+1	validated	p.I388F	1.000	230	0%	74	40.5%	7	28.5%	possibly_damaging(0.492)	deleterious(0.01)	deleterious(0.570)	NULL
GRM5	2915	genome.wustl.edu	37	11	88301131	88301131	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143831.2	-1	reviewed	p.R574*	0.973	77	0%	20	55%	0	-	-	-	-	NULL
GRM5	2915	genome.wustl.edu	37	11	88780838	88780838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143831.2	-1	reviewed	p.R68I	1.000	156	0%	41	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
TRIM77P	390231	genome.wustl.edu	37	11	89443701	89443701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343107.1	+1	model	p.E79*	0.000	104	0%	39	61.5%	0	-	-	-	-	NULL
ENSG00000234376	0	genome.wustl.edu	37	11	89486949	89486949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000411859	-1	known	p.E62D	0.998	205	0%	214	35%	0	-	-	-	-	NULL
TRIM77P	390231	genome.wustl.edu	37	11	89515316	89515316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398290	+1	known	p.R376I	0.001	234	0%	266	27.1%	0	-	-	-	-	HMMPfam_SPRY
ENSG00000204455	0	genome.wustl.edu	37	11	89595877	89595877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000311917	+1	known	p.F403C	0.000	103	0%	198	26.3%	0	-	-	-	-	HMMPfam_SPRY
TRIM64B	642446	genome.wustl.edu	37	11	89603862	89603862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000329862	-1	known	p.S426Y	0.079	323	0%	386	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY
TRIM64B	642446	genome.wustl.edu	37	11	89609147	89609147	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000329862	-1	known	p.L13	0.119	119	0%	85	17.6%	0	-	-	-	-	superfamily_SSF57850
ENSG00000223709	0	genome.wustl.edu	37	11	89790999	89790999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000436580	-1	known	p.R373I	0.001	101	0%	140	73.6%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
UBTFL1	642623	genome.wustl.edu	37	11	89819594	89819594	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143975.1	+1	provisional	p.E159	0.013	133	0%	147	52.4%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
UBTFL1	642623	genome.wustl.edu	37	11	89819728	89819728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143975.1	+1	provisional	p.S204Y	0.267	112	0%	111	45.9%	0	-	-	-	-	NULL
FAT3	120114	genome.wustl.edu	37	11	92086978	92086978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.R567Q	0.090	73	0%	23	60.9%	0	-	benign(0.051)	tolerated(0.54)	neutral(0.010)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92430607	92430607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.L1222P	1.000	173	0%	76	48.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92495264	92495264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.F1304L	1.000	246	0%	53	34%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92498146	92498146	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.F1362	0.980	422	0%	127	48.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92543156	92543156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.S3132Y	0.999	96	0%	31	54.8%	0	-	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92592376	92592376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.R3849Q	1.000	232	0%	153	39.2%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_Concanavalin A-like lectins/glucanases
FAT3	120114	genome.wustl.edu	37	11	92620228	92620228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.S4334T	1.000	148	0%	66	50%	0	-	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
FAT3	120114	genome.wustl.edu	37	11	92623913	92623913	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008781.2	+1	validated	p.P4436	0.913	66	0%	19	52.6%	0	-	-	-	-	NULL
SLC36A4	120103	genome.wustl.edu	37	11	92881798	92881798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152313.2	-1	provisional	p.E474*	1.000	93	0%	14	35.7%	45	46.6%	-	-	-	NULL
SLC36A4	120103	genome.wustl.edu	37	11	92901214	92901214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152313.2	-1	provisional	p.L222I	1.000	131	0.8%	49	32.7%	37	43.2%	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	HMMPfam_Aa_trans
CCDC67	159989	genome.wustl.edu	37	11	93090126	93090126	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181645.3	+1	validated	p.R72*	1.000	83	0%	84	44%	2	0%	-	-	-	NULL
CCDC67	159989	genome.wustl.edu	37	11	93103303	93103303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181645.3	+1	validated	p.S166Y	1.000	155	0%	139	41%	1	0%	benign(0.378)	tolerated(0.36)	neutral(0.140)	NULL
CCDC67	159989	genome.wustl.edu	37	11	93148236	93148236	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181645.3	+1	validated	p.E532*	0.997	541	0%	217	44.7%	2	0%	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93400883	93400883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033395.1	+1	validated	p.E73D	1.000	54	0%	52	53.8%	1	0%	possibly_damaging(0.741)	deleterious(0.03)	deleterious(0.636)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93433168	93433168	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033395.1	+1	validated	p.F1697C	0.039	136	0%	128	43.8%	6	16.6%	probably_damaging(0.989)	tolerated(0.15)	deleterious(0.680)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93463303	93463303	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033395.1	+1	validated	p.E2586*	1.000	129	0%	94	45.7%	16	56.2%	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93463415	93463415	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033395.1	+1	validated	p.R2596*	1.000	160	0%	96	50%	29	55.1%	-	-	-	NULL
MED17	9440	genome.wustl.edu	37	11	93535033	93535033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004268.4	+1	reviewed	p.R454Q	1.000	88	0%	97	47.4%	44	40.9%	benign(0.186)	tolerated(0.31)	neutral(0.044)	HMMPfam_DUF2364
MRE11A	4361	genome.wustl.edu	37	11	94180528	94180528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005591.3	-1	reviewed	p.S547I	0.501	277	0%	50	38%	32	40.6%	benign(0.152)	tolerated(0.18)	neutral(0.070)	NULL
MRE11A	4361	genome.wustl.edu	37	11	94180586	94180586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005591.3	-1	reviewed	p.A528T	1.000	183	0%	45	46.7%	24	41.6%	benign(0.103)	tolerated(0.09)	neutral(0.304)	NULL
PIWIL4	143689	genome.wustl.edu	37	11	94308223	94308223	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152431.2	+1	validated	p.K75N	0.000	284	0%	221	46.6%	0	-	benign(0.005)	tolerated(0.57)	neutral(0.006)	NULL
PIWIL4	143689	genome.wustl.edu	37	11	94320235	94320235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152431.2	+1	validated	p.F246L	0.992	347	0%	92	47.8%	0	-	possibly_damaging(0.481)	tolerated(0.16)	neutral(0.219)	superfamily_PAZ domain
PIWIL4	143689	genome.wustl.edu	37	11	94352990	94352990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152431.2	+1	validated	p.R745C	0.098	364	0%	76	48.7%	1	0%	probably_damaging(0.974)	tolerated(0.05)	deleterious(0.761)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
AMOTL1	154810	genome.wustl.edu	37	11	94583289	94583289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130847.2	+1	reviewed	p.F553L	0.999	62	0%	31	45.2%	14	42.8%	benign(0.111)	tolerated(0.69)	neutral(0.011)	NULL
KDM4D	55693	genome.wustl.edu	37	11	94730615	94730615	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018039.2	+1	validated	p.E27*	1.000	126	0%	70	41.4%	0	-	-	-	-	HMMPfam_JmjN
JRKL	8690	genome.wustl.edu	37	11	96123952	96123952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003772.3	+1	reviewed	p.K47Q	0.997	41	0%	76	48.7%	15	53.3%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_CENP-B_N,superfamily_Homeodomain_like
CNTN5	53942	genome.wustl.edu	37	11	100170017	100170017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014361.2	+1	reviewed	p.R837*	0.998	128	0%	35	57.1%	2	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTN5	53942	genome.wustl.edu	37	11	100211295	100211295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014361.2	+1	reviewed	p.T944M	0.840	213	0%	30	20%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KIAA1377	57562	genome.wustl.edu	37	11	101793457	101793457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020802.2	+1	validated	p.R72C	1.000	76	0%	136	50%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101793481	101793481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020802.2	+1	validated	p.R80W	0.999	71	0%	132	30.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BIRC2	329	genome.wustl.edu	37	11	102248382	102248382	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001166.3	+1	reviewed	p.E508*	1.000	132	0%	120	42.5%	34	35.2%	-	-	-	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like,superfamily_SSF57924
BIRC2	329	genome.wustl.edu	37	11	102248796	102248796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001166.3	+1	reviewed	p.S580Y	1.000	242	0%	209	43.1%	31	58%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57924
MMP8	4317	genome.wustl.edu	37	11	102584175	102584175	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002424.2	-1	reviewed	p.V436	1.000	183	0%	64	39.1%	0	-	-	-	-	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
MMP1	4312	genome.wustl.edu	37	11	102661239	102661239	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002421.3	-1	reviewed	p.F438	1.000	255	0%	140	47.9%	4	0%	-	-	-	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
MMP12	4321	genome.wustl.edu	37	11	102737126	102737126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000326227	-1	known	p.S322Y	0.903	134	0%	59	45.8%	53	0%	-	-	-	superfamily_Hemopexin-like domain,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120
DYNC2H1	79659	genome.wustl.edu	37	11	102984412	102984412	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080463.1	+1	reviewed	p.Q114	0.990	137	0%	119	46.2%	0	-	-	-	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	102992120	102992120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080463.1	+1	reviewed	p.E460D	0.956	119	0%	54	51.9%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_DHC_N1
DYNC2H1	79659	genome.wustl.edu	37	11	103006507	103006507	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080463.1	+1	reviewed	p.E802*	1.000	170	0%	88	37.5%	0	-	-	-	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103024093	103024093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080463.1	+1	reviewed	p.K1053T	1.000	81	0%	26	53.8%	1	100%	probably_damaging(0.976)	tolerated(0.09)	deleterious(0.714)	NULL
CASP5	838	genome.wustl.edu	37	11	104874045	104874045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136112.1	-1	reviewed	p.P180T	0.971	212	0%	72	47.2%	0	-	possibly_damaging(0.863)	deleterious(0.02)	deleterious(0.717)	NULL
CASP5	838	genome.wustl.edu	37	11	104877884	104877884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136112.1	-1	reviewed	p.R133Q	0.000	355	0%	74	35.1%	0	-	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
CASP5	838	genome.wustl.edu	37	11	104877943	104877943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136112.1	-1	reviewed	p.K113N	0.000	288	0%	84	39.3%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
GRIA4	2893	genome.wustl.edu	37	11	105483026	105483026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000829.3	+1	reviewed	p.D38Y	1.000	166	0%	78	42.3%	0	-	possibly_damaging(0.795)	deleterious(0.05)	deleterious(0.644)	superfamily_SSF53822
GRIA4	2893	genome.wustl.edu	37	11	105732916	105732916	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000829.3	+1	reviewed	p.L218	1.000	86	0%	34	41.2%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
CWF19L2	143884	genome.wustl.edu	37	11	107299925	107299925	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152434.2	-1	validated	p.E345*	0.803	213	0%	142	47.2%	5	0%	-	-	-	NULL
ALKBH8	91801	genome.wustl.edu	37	11	107393166	107393166	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138775.2	-1	validated	p.I382	0.932	206	0%	48	45.8%	1	100%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ELMOD1	55531	genome.wustl.edu	37	11	107526740	107526740	+	Missense_Mutation	SNP	C	C	A	rs190625125	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018712.3	+1	validated	p.F260L	1.000	131	0%	181	39.2%	0	-	benign(0.006)	tolerated(0.56)	neutral(0.006)	HMMPfam_ELMO_CED12
RAB39A	54734	genome.wustl.edu	37	11	107832985	107832985	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017516.1	+1	provisional	p.K181Q	0.996	81	0%	100	34%	0	-	benign(0.058)	tolerated(0.19)	neutral(0.053)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
CUL5	8065	genome.wustl.edu	37	11	107966366	107966366	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003478.3	+1	validated	p.N618T	1.000	185	0%	127	41.7%	26	57.6%	probably_damaging(1)	tolerated(0.84)	deleterious(0.500)	HMMPfam_Cullin,superfamily_Cullin homology domain
ACAT1	38	genome.wustl.edu	37	11	108004962	108004962	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000019.3	+1	reviewed	p.E85*	1.000	54	0%	102	43.1%	33	0%	-	-	-	HMMPfam_Thiolase_N,superfamily_Thiolase-like
ATM	472	genome.wustl.edu	37	11	108121653	108121653	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000051.3	+1	reviewed	p.I487M	1.000	132	0%	117	44.4%	2	50%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108190752	108190752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000051.3	+1	reviewed	p.F2140C	1.000	103	0%	126	45.2%	3	100%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_FAT,superfamily_ARM repeat
EXPH5	23086	genome.wustl.edu	37	11	108380999	108380999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015065.2	-1	validated	p.F1745L	0.008	60	0%	45	42.2%	0	-	benign(0.073)	tolerated(1)	neutral(0.005)	NULL
EXPH5	23086	genome.wustl.edu	37	11	108382139	108382139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015065.2	-1	validated	p.E1365D	0.000	69	0%	131	45%	7	57.1%	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	NULL
DDX10	1662	genome.wustl.edu	37	11	108577485	108577485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004398.2	+1	reviewed	p.A415T	0.982	388	0%	124	43.5%	17	64.7%	benign(0.358)	deleterious(0.03)	deleterious(0.478)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX10	1662	genome.wustl.edu	37	11	108593923	108593923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004398.2	+1	reviewed	p.E567K	0.050	316	0%	75	44%	46	56.5%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
DDX10	1662	genome.wustl.edu	37	11	108709276	108709276	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004398.2	+1	reviewed	p.F690C	1.000	93	0%	100	42%	26	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RDX	5962	genome.wustl.edu	37	11	110106899	110106899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002906.3	-1	reviewed	p.E423D	1.000	223	0%	210	49%	39	23%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_ERM
RDX	5962	genome.wustl.edu	37	11	110128868	110128868	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002906.3	-1	reviewed	p.I172L	1.000	348	0%	466	43.3%	30	73.3%	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
RDX	5962	genome.wustl.edu	37	11	110143261	110143261	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002906.3	-1	reviewed	p.Q32	1.000	171	0%	77	51.9%	12	25%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
ARHGAP20	57569	genome.wustl.edu	37	11	110451614	110451614	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020809.2	-1	validated	p.L686	0.737	90	0%	47	46.8%	0	-	-	-	-	NULL
ARHGAP20	57569	genome.wustl.edu	37	11	110457040	110457040	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020809.2	-1	validated	p.R439*	0.999	32	0%	57	50.9%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP20	57569	genome.wustl.edu	37	11	110461422	110461422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020809.2	-1	validated	p.E419K	0.753	204	0%	120	39.2%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
C11orf93	120376	genome.wustl.edu	37	11	111177328	111177328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136105.1	+1	predicted	p.F26V	0.997	138	0%	104	14.4%	1	0%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	NULL
LAYN	143903	genome.wustl.edu	37	11	111431011	111431011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178834.3	+1	provisional	p.D318G	0.001	261	0%	92	48.9%	5	0%	benign(0.117)	tolerated(0.51)	neutral(0.018)	NULL
ALG9	79796	genome.wustl.edu	37	11	111708318	111708318	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024740.2	-1	reviewed	p.L449	1.000	335	0%	156	40.4%	45	44.4%	-	-	-	HMMPfam_Glyco_transf_22
C11orf1	64776	genome.wustl.edu	37	11	111753192	111753192	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022761.2	+1	validated	p.K49T	1.000	148	0%	69	42%	37	51.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1143
DIXDC1	85458	genome.wustl.edu	37	11	111845650	111845650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000440460	+1	known	p.A200V	0.998	147	0%	56	33.9%	4	25%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
DIXDC1	85458	genome.wustl.edu	37	11	111853173	111853173	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000440460	+1	known	p.E293*	1.000	161	0%	161	39.8%	0	-	-	-	-	NULL
C11orf57	55216	genome.wustl.edu	37	11	111951196	111951196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001082969.1	+1	validated	p.E78D	0.982	162	0%	96	10.4%	26	15.3%	benign(0.195)	tolerated(0.26)	neutral(0.053)	NULL
C11orf57	55216	genome.wustl.edu	37	11	111953279	111953279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001082969.1	+1	validated	p.K155N	1.000	152	0%	168	44.6%	13	61.5%	unknown(0)	deleterious(0)	-	NULL
IL18	3606	genome.wustl.edu	37	11	112014350	112014350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001562.2	-1	reviewed	p.S184Y	0.025	130	0.8%	103	44.7%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IL1,HMMSmart_IL1,superfamily_Cytok_IL1_like
BCO2	83875	genome.wustl.edu	37	11	112085727	112085727	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000430950	+1	known	p.*352Y	0.005	64	0%	106	38.7%	0	-	-	-	-	NULL
TTC12	54970	genome.wustl.edu	37	11	113211429	113211429	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017868.3	+1	validated	p.I290	1.000	262	0.4%	124	10.5%	20	0%	-	-	-	superfamily_ARM-type_fold
ANKK1	255239	genome.wustl.edu	37	11	113265662	113265662	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178510.1	+1	reviewed	p.F164	0.990	89	0%	46	45.7%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
DRD2	1813	genome.wustl.edu	37	11	113287600	113287600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000795.3	-1	reviewed	p.G173R	1.000	176	0%	40	45%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZW10	9183	genome.wustl.edu	37	11	113604447	113604447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004724.2	-1	reviewed	p.R770I	1.000	160	0%	53	50.9%	44	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP28	57646	genome.wustl.edu	37	11	113673913	113673913	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020886.2	-1	validated	p.S943	0.009	40	0%	22	45.5%	10	40%	-	-	-	NULL
HTR3A	3359	genome.wustl.edu	37	11	113853885	113853885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213621.3	+1	reviewed	p.R140W	0.000	312	0%	92	47.8%	0	-	possibly_damaging(0.912)	deleterious(0.02)	deleterious(0.746)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ZBTB16	7704	genome.wustl.edu	37	11	113934436	113934436	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001018011.1	+1	reviewed	p.A138	0.000	27	0%	26	53.8%	0	-	-	-	-	NULL
NNMT	4837	genome.wustl.edu	37	11	114168752	114168752	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006169.2	+1	reviewed	p.F78	0.996	335	0%	60	43.3%	39	0%	-	-	-	HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
FAM55B	120406	genome.wustl.edu	37	11	114568901	114568901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182495.5	+1	validated	p.E89D	0.000	910	0.1%	166	44%	0	-	possibly_damaging(0.736)	tolerated(0.21)	neutral(0.313)	NULL
FAM55B	120406	genome.wustl.edu	37	11	114569315	114569315	+	Silent	SNP	C	C	A	rs76533108		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182495.5	+1	validated	p.V227	0.010	353	0%	51	39.2%	0	-	-	-	-	NULL
CADM1	23705	genome.wustl.edu	37	11	115047200	115047200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014333.3	-1	validated	p.F441L	1.000	562	0%	283	43.8%	68	35.2%	possibly_damaging(0.885)	tolerated(0.15)	deleterious(0.587)	NULL
ZNF259	8882	genome.wustl.edu	37	11	116658264	116658264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003904.3	-1	provisional	p.E89D	1.000	34	0%	40	50%	50	44%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	HMMPfam_zf-ZPR1,HMMSmart_Zpr1
SIDT2	51092	genome.wustl.edu	37	11	117052583	117052583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040455.1	+1	validated	p.K122N	1.000	90	0%	102	39.2%	13	15.3%	benign(0.035)	tolerated(0.45)	neutral(0.014)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117303956	117303956	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020693.2	-1	provisional	p.F1702V	1.000	285	0%	183	48.6%	0	-	benign(0.007)	tolerated(0.42)	neutral(0.014)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117403225	117403225	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020693.2	-1	provisional	p.F235C	1.000	132	0%	71	35.2%	0	-	benign(0.372)	tolerated(0.12)	neutral(0.379)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IL10RA	3587	genome.wustl.edu	37	11	117859118	117859118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001558.3	+1	reviewed	p.P30L	0.007	128	0.8%	90	43.3%	1	100%	possibly_damaging(0.895)	tolerated(0.22)	neutral(0.395)	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind
IL10RA	3587	genome.wustl.edu	37	11	117864743	117864743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001558.3	+1	reviewed	p.N189K	0.503	50	0%	77	27.3%	3	0%	benign(0.013)	tolerated(0.09)	neutral(0.297)	superfamily_Fibronectin type III,HMMPfam_IL10Ra-bind
AMICA1	120425	genome.wustl.edu	37	11	118076650	118076650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098526.1	-1	validated	p.E161*	0.855	802	0%	135	50.4%	3	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD3G	917	genome.wustl.edu	37	11	118220683	118220683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000073.2	+1	reviewed	p.R102T	0.996	99	0%	111	38.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
MLL	4297	genome.wustl.edu	37	11	118342634	118342634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005933.2	+1	validated	p.K254Q	1.000	34	0%	26	53.8%	1	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
MLL	4297	genome.wustl.edu	37	11	118374685	118374685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005933.2	+1	validated	p.S2690Y	0.981	146	0%	82	46.3%	6	50%	probably_damaging(0.991)	-	-	NULL
TREH	11181	genome.wustl.edu	37	11	118530498	118530498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000264029	-1	known	p.F426L	1.000	44	0%	28	42.9%	0	-	benign(0.022)	deleterious(0.02)	neutral(0.384)	HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases
HYOU1	10525	genome.wustl.edu	37	11	118916319	118916319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130991.1	-1	reviewed	p.N996D	0.998	100	0%	104	34.6%	314	46.1%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DPAGT1	1798	genome.wustl.edu	37	11	118972310	118972310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001382.3	-1	reviewed	p.L19P	0.550	53	0%	32	12.5%	29	6.8%	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	NULL
ABCG4	64137	genome.wustl.edu	37	11	119029287	119029287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142505.1	+1	reviewed	p.F396L	0.892	132	0%	54	50%	1	0%	benign(0)	tolerated(1)	-	HMMPfam_ABC2_membrane
NLRX1	79671	genome.wustl.edu	37	11	119054618	119054618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170722.1	+1	reviewed	p.L899I	0.442	134	0%	58	36.2%	12	25%	unknown(0)	-	-	NULL
CBL	867	genome.wustl.edu	37	11	119156200	119156200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005188.2	+1	reviewed	p.F622C	1.000	74	0%	49	49%	4	25%	possibly_damaging(0.952)	tolerated(0.13)	deleterious(0.648)	NULL
RNF26	79102	genome.wustl.edu	37	11	119206726	119206726	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032015.3	+1	reviewed	p.A298	0.791	14	0%	43	53.5%	46	58.6%	-	-	-	NULL
C1QTNF5	114902	genome.wustl.edu	37	11	119210089	119210089	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015645.3	-1	reviewed	p.S228	0.426	24	0%	65	55.4%	22	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
MFRP	83552	genome.wustl.edu	37	11	119213710	119213710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031433.2	-1	reviewed	p.F376L	1.000	4	0.000	11	0.455	0	-	possibly_damaging(0.539)	tolerated(0.33)	neutral(0.206)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
THY1	7070	genome.wustl.edu	37	11	119290876	119290876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006288.3	-1	validated	p.M86I	0.287	331	0%	148	39.9%	32	0%	benign(0)	tolerated(0.79)	neutral(0.001)	HMMSmart_SM00406,HMMPfam_ig,superfamily_Immunoglobulin
PVRL1	5818	genome.wustl.edu	37	11	119549237	119549237	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002855.4	-1	reviewed	p.D106	0.997	89	0%	36	27.8%	23	52.1%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TRIM29	23650	genome.wustl.edu	37	11	120008154	120008154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012101.3	-1	reviewed	p.E196K	1.000	34	0%	20	40%	0	-	unknown(0)	-	-	NULL
POU2F3	25833	genome.wustl.edu	37	11	120188024	120188024	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014352.2	+1	validated	p.N408Y	1.000	436	0%	128	41.4%	0	-	benign(0.286)	deleterious(0.03)	neutral(0.453)	NULL
GRIK4	2900	genome.wustl.edu	37	11	120838020	120838020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014619.2	+1	reviewed	p.H795N	1.000	163	0%	71	46.5%	0	-	possibly_damaging(0.838)	tolerated(0.41)	neutral(0.335)	HMMPfam_Lig_chan
TECTA	7007	genome.wustl.edu	37	11	121000387	121000387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005422.2	+1	reviewed	p.S803L	0.978	203	0%	179	46.9%	0	-	benign(0.027)	tolerated(0.24)	neutral(0.039)	HMMPfam_VWD,HMMSmart_SM00216
TECTA	7007	genome.wustl.edu	37	11	121023684	121023684	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005422.2	+1	reviewed	p.H1400	1.000	80	0%	21	38.1%	0	-	-	-	-	superfamily_Serine proterase inhibitors,HMMSmart_SM00181,HMMPfam_TIL
SC5DL	6309	genome.wustl.edu	37	11	121174203	121174203	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024956.2	+1	reviewed	p.V40A	0.996	408	0%	163	41.7%	25	28%	benign(0.039)	tolerated(0.07)	neutral(0.321)	NULL
SORL1	6653	genome.wustl.edu	37	11	121424696	121424696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003105.4	+1	reviewed	p.D773Y	1.000	200	0.5%	42	42.9%	7	42.8%	benign(0.007)	deleterious(0.02)	neutral(0.383)	superfamily_YWTD domain
CRTAM	56253	genome.wustl.edu	37	11	122726421	122726421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019604.2	+1	validated	p.F170C	0.023	158	0%	101	47.5%	0	-	benign(0.059)	tolerated(0.21)	neutral(0.048)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
C11orf63	79864	genome.wustl.edu	37	11	122817409	122817409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024806.2	+1	validated	p.R613I	0.285	94	0%	69	44.9%	1	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
GRAMD1B	57476	genome.wustl.edu	37	11	123476057	123476057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020716.1	+1	validated	p.E255D	1.000	411	0%	67	41.8%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
TMEM225	338661	genome.wustl.edu	37	11	123755204	123755204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013743.1	-1	provisional	p.F107L	0.003	198	0%	73	41.1%	0	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
OR10S1	219873	genome.wustl.edu	37	11	123847714	123847714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004474.1	-1	provisional	p.V229I	0.000	73	0%	16	50%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10G7	390265	genome.wustl.edu	37	11	123909113	123909113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004463.1	-1	provisional	p.F199C	0.694	548	0%	168	45.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
OR8G5	219865	genome.wustl.edu	37	11	124120570	124120570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000341493	+1	known	p.W50R	0.000	669	0.1%	32	37.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC100288845	100288845	genome.wustl.edu	37	11	124121105	124121105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343133.1	-1	model	p.M41V	0.388	582	0%	54	40.7%	0	-	-	-	-	NULL
OR8G5	219865	genome.wustl.edu	37	11	124135379	124135379	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005198.1	+1	provisional	p.I219	0.000	385	0%	126	37.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8D1	283159	genome.wustl.edu	37	11	124180396	124180396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002917.1	-1	provisional	p.K89N	0.000	206	0.5%	21	42.9%	0	-	benign(0.358)	tolerated(0.1)	neutral(0.400)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8B3	390271	genome.wustl.edu	37	11	124266466	124266466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005467.1	-1	provisional	p.K261T	0.012	89	0%	55	40%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8B3	390271	genome.wustl.edu	37	11	124267074	124267074	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005467.1	-1	provisional	p.P58	0.993	373	0%	146	44.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ESAM	90952	genome.wustl.edu	37	11	124626510	124626510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138961.2	-1	validated	p.C126*	0.582	80	0%	120	45.8%	6	16.6%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
MSANTD2	79684	genome.wustl.edu	37	11	124637135	124637135	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024631.2	-1	validated	p.S487	0.009	19	0%	78	44.9%	12	50%	-	-	-	NULL
MSANTD2	79684	genome.wustl.edu	37	11	124644864	124644864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000374979	-1	known	p.R173C	1.000	19	0%	24	45.8%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ROBO3	64221	genome.wustl.edu	37	11	124748572	124748572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022370.3	+1	reviewed	p.R1138Q	0.006	217	0%	65	46.2%	1	0%	benign(0.003)	tolerated(0.16)	neutral(0.059)	NULL
HEPN1	641654	genome.wustl.edu	37	11	124789818	124789818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037558.2	+1	provisional	p.D58N	0.000	131	0%	123	43.1%	1	0%	benign(0.079)	-	-	NULL
HEPACAM	220296	genome.wustl.edu	37	11	124792339	124792339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152722.4	-1	validated	p.R298Q	0.835	91	0%	63	52.4%	0	-	possibly_damaging(0.892)	deleterious(0.03)	deleterious(0.716)	NULL
CCDC15	80071	genome.wustl.edu	37	11	124875083	124875083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025004.2	+1	validated	p.K796Q	1.000	94	0%	43	41.9%	7	71.4%	probably_damaging(0.954)	tolerated(0.08)	deleterious(0.698)	NULL
CCDC15	80071	genome.wustl.edu	37	11	124908497	124908497	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025004.2	+1	validated	p.L861R	0.001	44	0%	43	37.2%	5	40%	possibly_damaging(0.887)	tolerated(0.21)	neutral(0.391)	NULL
PKNOX2	63876	genome.wustl.edu	37	11	125281739	125281739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022062.2	+1	validated	p.S305F	1.000	259	0%	88	43.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
EI24	9538	genome.wustl.edu	37	11	125445202	125445202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000343678	+1	known	p.L29P	0.997	90	0%	87	39.1%	112	50%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
PATE4	399968	genome.wustl.edu	37	11	125708240	125708240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144874.1	+1	validated	p.K72T	0.001	103	0%	56	42.9%	0	-	benign(0.224)	tolerated(0.25)	neutral(0.059)	NULL
PUS3	83480	genome.wustl.edu	37	11	125763942	125763942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031307.3	-1	validated	p.V395A	0.004	152	0%	146	44.5%	22	50%	benign(0.018)	tolerated(0.18)	neutral(0.057)	NULL
DDX25	29118	genome.wustl.edu	37	11	125781307	125781307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013264.3	+1	reviewed	p.R242C	0.960	273	0%	175	46.9%	0	-	benign(0.013)	deleterious(0)	neutral(0.445)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDON	50937	genome.wustl.edu	37	11	125853983	125853983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016952.4	-1	validated	p.R927C	1.000	51	0%	42	31%	0	-	possibly_damaging(0.827)	deleterious(0)	deleterious(0.758)	NULL
SRPR	6734	genome.wustl.edu	37	11	126137506	126137506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003139.3	-1	reviewed	p.Q101H	0.486	25	0%	72	52.8%	67	49.2%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_SRP-alpha_N
TIRAP	114609	genome.wustl.edu	37	11	126162890	126162890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148910.2	+1	reviewed	p.Y196H	1.000	59	0%	42	38.1%	4	25%	possibly_damaging(0.787)	tolerated(0.07)	deleterious(0.613)	superfamily_Toll/Interleukin receptor TIR domain
KIRREL3	84623	genome.wustl.edu	37	11	126294583	126294583	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032531.3	-1	reviewed	p.F743	1.000	184	0%	94	46.8%	0	-	-	-	-	NULL
KIRREL3	84623	genome.wustl.edu	37	11	126305195	126305195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032531.3	-1	reviewed	p.S519L	1.000	338	0%	88	28.4%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128840294	128840294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142685.1	-1	validated	p.S1591Y	0.086	126	0%	84	56%	4	50%	possibly_damaging(0.688)	deleterious(0.01)	deleterious(0.651)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128993398	128993398	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142685.1	-1	validated	p.P115	0.962	172	0%	49	38.8%	1	100%	-	-	-	NULL
NFRKB	4798	genome.wustl.edu	37	11	129735820	129735820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006165.3	-1	validated	p.G1222D	1.000	247	0.4%	117	41.9%	27	33.3%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
ADAMTS15	170689	genome.wustl.edu	37	11	130332037	130332037	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139055.2	+1	reviewed	p.G382	1.000	158	0%	52	36.5%	0	-	-	-	-	HMMPfam_Reprolysin,superfamily_SSF55486
IGSF9B	22997	genome.wustl.edu	37	11	133806078	133806078	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014987.1	-1	validated	p.I231L	1.000	110	0%	29	44.8%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_I-set,superfamily_SSF48726
NCAPD3	23310	genome.wustl.edu	37	11	134038879	134038879	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015261.2	-1	validated	p.E1058*	1.000	240	0%	120	36.7%	14	14.2%	-	-	-	superfamily_ARM-type_fold
NCAPD3	23310	genome.wustl.edu	37	11	134073951	134073951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015261.2	-1	validated	p.R402Q	0.961	102	0%	85	20%	6	16.6%	possibly_damaging(0.671)	tolerated(0.19)	neutral(0.287)	superfamily_ARM-type_fold
THYN1	29087	genome.wustl.edu	37	11	134121168	134121168	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037305.1	-1	reviewed	p.E26	0.001	257	0%	169	46.2%	90	50%	-	-	-	NULL
B3GAT1	27087	genome.wustl.edu	37	11	134252700	134252700	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018644.3	-1	reviewed	p.K274	1.000	69	0%	46	50%	0	-	-	-	-	HMMPfam_Glyco_transf_43,superfamily_SSF53448
B3GAT1	27087	genome.wustl.edu	37	11	134252836	134252836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018644.3	-1	reviewed	p.A229V	1.000	27	0%	20	50%	0	-	benign(0.031)	tolerated(0.23)	neutral(0.043)	HMMPfam_Glyco_transf_43,superfamily_SSF53448
SLC6A13	6540	genome.wustl.edu	37	12	369152	369152	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016615.2	-1	provisional	p.K23Q	1.000	205	0%	84	52.4%	0	-	benign(0.101)	tolerated(0.26)	neutral(0.042)	NULL
KDM5A	5927	genome.wustl.edu	37	12	438057	438057	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042603.1	-1	reviewed	p.E638*	1.000	362	0%	92	44.6%	6	0%	-	-	-	NULL
KDM5A	5927	genome.wustl.edu	37	12	438179	438179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042603.1	-1	reviewed	p.Q597P	1.000	221	0%	60	38.3%	12	8.3%	benign(0.028)	deleterious(0.03)	neutral(0.366)	HMMSmart_SM00558
B4GALNT3	283358	genome.wustl.edu	37	12	662362	662362	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173593.3	+1	validated	p.F425V	0.219	6	0.000	21	0.476	4	100%	benign(0.059)	tolerated(0.23)	neutral(0.045)	NULL
WNK1	65125	genome.wustl.edu	37	12	987399	987399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018979.3	+1	reviewed	p.A749S	1.000	150	0%	71	43.7%	11	36.3%	unknown(0)	tolerated(0.5)	-	superfamily_Kinase_like
WNK1	65125	genome.wustl.edu	37	12	991106	991106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018979.3	+1	reviewed	p.S1080N	1.000	72	0%	68	39.7%	14	42.8%	unknown(0)	tolerated(0.08)	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1137251	1137251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178040.2	+1	reviewed	p.S61Y	1.000	140	0%	63	41.3%	9	55.5%	unknown(0)	deleterious(0)	-	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	2027542	2027542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172364.4	-1	reviewed	p.R33H	0.000	50	0%	27	25.9%	0	-	benign(0.002)	tolerated(0.53)	neutral(0.007)	NULL
CACNA1C	775	genome.wustl.edu	37	12	2702465	2702465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199460.2	+1	reviewed	p.P873S	1.000	272	0%	73	34.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ITFG2	55846	genome.wustl.edu	37	12	2927442	2927442	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018463.3	+1	validated	p.I135	1.000	190	0%	112	39.3%	27	51.8%	-	-	-	HMMPfam_FG-GAP,superfamily_Integrin alpha N-terminal domain
PRMT8	56341	genome.wustl.edu	37	12	3677990	3677990	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019854.3	+1	validated	p.V200	1.000	427	0%	128	50.8%	0	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT8	56341	genome.wustl.edu	37	12	3678714	3678714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019854.3	+1	validated	p.K232N	1.000	253	0%	91	47.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT8	56341	genome.wustl.edu	37	12	3686081	3686081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019854.3	+1	validated	p.V253M	1.000	228	0%	49	46.9%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PARP11	57097	genome.wustl.edu	37	12	3921558	3921558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020367.4	-1	validated	p.D250Y	1.000	189	0%	43	41.9%	5	40%	benign(0.139)	tolerated(0.05)	neutral(0.357)	HMMPfam_PARP,superfamily_ADP-ribosylation
DYRK4	8798	genome.wustl.edu	37	12	4705362	4705362	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003845.1	+1	provisional	p.I110	0.725	119	0%	31	16.1%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
DYRK4	8798	genome.wustl.edu	37	12	4721725	4721725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003845.1	+1	provisional	p.R388C	1.000	92	0%	37	37.8%	63	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DYRK4	8798	genome.wustl.edu	37	12	4722721	4722721	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003845.1	+1	provisional	p.S455	0.000	106	0%	35	45.7%	78	42.3%	-	-	-	NULL
AKAP3	10566	genome.wustl.edu	37	12	4735964	4735964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006422.2	-1	reviewed	p.D702Y	0.998	248	0%	35	48.6%	1	0%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_AKAP_110,HMMSmart_SM00807
GALNT8	26290	genome.wustl.edu	37	12	4854691	4854691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017417.1	+1	reviewed	p.K319N	0.072	366	0%	31	41.9%	0	-	benign(0.06)	tolerated(0.15)	neutral(0.245)	HMMPfam_Glycos_transf_2,superfamily_SSF53448
KCNA5	3741	genome.wustl.edu	37	12	5154705	5154705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002234.2	+1	reviewed	p.F464L	1.000	138	0%	76	44.7%	0	-	benign(0.396)	deleterious(0.04)	deleterious(0.476)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ANO2	57101	genome.wustl.edu	37	12	5672556	5672556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020373.2	-1	validated	p.R969Q	0.000	156	0%	40	60%	0	-	unknown(0)	tolerated(0.61)	-	NULL
ANO2	57101	genome.wustl.edu	37	12	5672648	5672648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020373.2	-1	validated	p.K938N	1.000	285	0%	70	37.1%	0	-	possibly_damaging(0.493)	tolerated(0.14)	neutral(0.414)	HMMPfam_DUF590
ANO2	57101	genome.wustl.edu	37	12	5722082	5722082	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020373.2	-1	validated	p.G657	0.168	267	0%	42	45.2%	0	-	-	-	-	NULL
ANO2	57101	genome.wustl.edu	37	12	5744323	5744323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020373.2	-1	validated	p.K604R	1.000	208	0%	58	46.6%	0	-	benign(0.067)	deleterious(0.03)	neutral(0.369)	NULL
ANO2	57101	genome.wustl.edu	37	12	5908725	5908725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020373.2	-1	validated	p.E331*	1.000	93	0%	114	38.6%	2	0%	-	-	-	NULL
VWF	7450	genome.wustl.edu	37	12	6122773	6122773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000552.3	-1	reviewed	p.D1832N	0.950	199	0%	99	42.4%	36	0%	benign(0.095)	tolerated(0.05)	neutral(0.352)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWF	7450	genome.wustl.edu	37	12	6138570	6138570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000552.3	-1	reviewed	p.A969S	0.890	198	0%	59	40.7%	21	0%	benign(0.004)	tolerated(0.22)	neutral(0.042)	HMMPfam_VWD,HMMSmart_SM00216
GAPDH	2597	genome.wustl.edu	37	12	6647361	6647361	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000448046	+1	known	e6-2	0.001	17	0%	42	47.6%	7764	47.1%	-	-	-	-
CHD4	1108	genome.wustl.edu	37	12	6711141	6711141	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001273.2	-1	reviewed	p.D141E	0.028	14	0%	25	40%	53	52.8%	benign(0.001)	tolerated(1)	-	NULL
C12orf53	196500	genome.wustl.edu	37	12	6806469	6806469	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153685.2	-1	predicted	p.F169	0.963	21	0%	25	64%	0	-	-	-	-	NULL
USP5	8078	genome.wustl.edu	37	12	6966801	6966801	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098536.1	+1	validated	p.S260A	1.000	47	0%	40	57.5%	75	48%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-UBP
LPCAT3	10162	genome.wustl.edu	37	12	7087663	7087663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005768.5	-1	validated	p.V294L	0.999	122	0%	52	50%	32	31.2%	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	HMMPfam_MBOAT
C1S	716	genome.wustl.edu	37	12	7173142	7173142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001734.3	+1	reviewed	p.F247L	0.983	437	0%	182	41.8%	58	1.7%	benign(0.01)	tolerated(0.14)	neutral(0.250)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
CD163L1	283316	genome.wustl.edu	37	12	7528345	7528345	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174941.4	-1	reviewed	p.H879	0.000	193	0%	59	52.5%	2	0%	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7586112	7586112	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174941.4	-1	reviewed	p.G101	0.000	180	0%	37	35.1%	1	0%	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7593813	7593813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174941.4	-1	reviewed	p.L21I	0.000	81	0%	92	51.1%	0	-	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
CD163	9332	genome.wustl.edu	37	12	7647754	7647754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004244.4	-1	validated	p.S448Y	0.583	332	0%	83	54.2%	5	0%	possibly_damaging(0.944)	tolerated(0.27)	neutral(0.422)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
SLC2A3	6515	genome.wustl.edu	37	12	8083102	8083102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006931.2	-1	validated	p.R216I	0.990	188	0%	158	43%	3	33.3%	benign(0.148)	deleterious(0.01)	neutral(0.419)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
NECAP1	25977	genome.wustl.edu	37	12	8248218	8248218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015509.3	+1	validated	p.S233Y	1.000	144	0%	88	50%	23	60.8%	benign(0.159)	deleterious(0.02)	neutral(0.397)	NULL
MFAP5	8076	genome.wustl.edu	37	12	8813464	8813464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003480.2	-1	reviewed	p.R30Q	0.989	163	0%	104	44.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGP
A2M	2	genome.wustl.edu	37	12	9225282	9225282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000014.4	-1	reviewed	p.M1314I	0.000	237	0%	111	36.9%	164	0%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
A2M	2	genome.wustl.edu	37	12	9227168	9227168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000014.4	-1	reviewed	p.F1248L	1.000	122	0%	49	40.8%	131	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
A2M	2	genome.wustl.edu	37	12	9262610	9262610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000014.4	-1	reviewed	p.A176T	0.000	115	0%	79	51.9%	28	3.5%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_A2M_N
PZP	5858	genome.wustl.edu	37	12	9334624	9334624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002864.2	-1	validated	p.E546K	0.995	181	0%	71	43.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_A2M_N_2
CLEC2D	29121	genome.wustl.edu	37	12	9822348	9822348	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004419.2	+1	reviewed	p.N6	0.000	140	0%	55	30.9%	1	0%	-	-	-	NULL
CD69	969	genome.wustl.edu	37	12	9907003	9907003	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026671.1	-1	reviewed	NULL	0.000	6	0.000	20	0.450	0	-	-	-	-	-
CLEC2B	9976	genome.wustl.edu	37	12	10015103	10015103	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005127.2	-1	reviewed	p.L23R	0.000	49	0%	33	39.4%	10	0%	unknown(0)	deleterious(0)	-	superfamily_C-type lectin-like
CLEC1B	51266	genome.wustl.edu	37	12	10145811	10145811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016509.3	-1	validated	p.F207L	0.091	297	0%	43	51.2%	0	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC7A	64581	genome.wustl.edu	37	12	10280279	10280279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000422474	-1	known	p.S90Y	0.000	101	1%	49	20.4%	0	-	unknown(0)	-	-	NULL
CLEC7A	64581	genome.wustl.edu	37	12	10280391	10280391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_197947.2	-1	reviewed	p.L53I	0.001	180	0%	66	56.1%	3	0%	probably_damaging(0.996)	tolerated(0.47)	deleterious(0.473)	HMMPfam_Ly49
KLRC1	3821	genome.wustl.edu	37	12	10599150	10599150	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002259.4	-1	reviewed	p.*234Y	0.000	217	0%	149	12.8%	1	0%	-	-	-	NULL
KLRC1	3821	genome.wustl.edu	37	12	10601899	10601899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002259.4	-1	reviewed	p.E142D	0.231	310	0%	164	44.5%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CSDA	8531	genome.wustl.edu	37	12	10871680	10871680	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003651.4	-1	validated	p.R109*	1.000	68	0%	63	39.7%	41	0%	-	-	-	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK
TAS2R7	50837	genome.wustl.edu	37	12	10954918	10954918	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023919.2	-1	reviewed	p.I84	0.000	80	0%	47	40.4%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R8	50836	genome.wustl.edu	37	12	10958831	10958831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023918.1	-1	reviewed	p.S250Y	0.000	63	0%	24	45.8%	0	-	benign(0.296)	tolerated(0.49)	neutral(0.102)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R9	50835	genome.wustl.edu	37	12	10961743	10961743	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023917.2	-1	reviewed	p.V311D	0.000	51	0%	14	50%	0	-	benign(0.11)	deleterious(0)	neutral(0.453)	NULL
TAS2R13	50838	genome.wustl.edu	37	12	11061060	11061060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023920.2	-1	reviewed	p.L280I	0.844	143	0%	24	50%	0	-	benign(0.005)	tolerated(1)	-	HMMPfam_TAS2R,superfamily_SSF81321
PRR4	11272	genome.wustl.edu	37	12	11126309	11126309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098538.1	-1	validated	p.K16N	0.003	132	0%	71	39.4%	10	30%	-	-	-	NULL
TAS2R42	353164	genome.wustl.edu	37	12	11339099	11339099	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181429.1	-1	provisional	p.E149*	0.001	123	0%	39	51.3%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
PRB2	653247	genome.wustl.edu	37	12	11546091	11546091	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006248.3	-1	validated	p.P307	0.002	435	0%	111	31.5%	0	-	-	-	-	NULL
PRB2	653247	genome.wustl.edu	37	12	11546491	11546491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006248.3	-1	validated	p.R174Q	0.000	557	1.1%	118	39.8%	0	-	unknown(0)	tolerated(0.44)	-	NULL
GPR19	2842	genome.wustl.edu	37	12	12814351	12814351	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006143.2	-1	validated	p.T344	0.945	300	0%	255	43.5%	2	100%	-	-	-	superfamily_Family A G protein-coupled receptor-like
CDKN1B	1027	genome.wustl.edu	37	12	12870962	12870962	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004064.3	+1	reviewed	p.D63E	1.000	38	0%	55	41.8%	146	45.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CDI
C12orf36	283422	genome.wustl.edu	37	12	13529264	13529264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182558.1	-1	provisional	p.P26T	0.001	291	0%	73	35.6%	0	-	unknown(0)	-	-	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14613480	14613480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018179.3	+1	validated	p.K737R	1.000	127	0%	51	43.1%	16	25%	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	NULL
PLBD1	79887	genome.wustl.edu	37	12	14659974	14659974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024829.5	-1	validated	p.L422P	1.000	204	0%	93	38.7%	22	27.2%	benign(0.01)	tolerated(0.22)	neutral(0.043)	HMMPfam_Phospholip_B
C12orf60	144608	genome.wustl.edu	37	12	14976471	14976471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175874.3	+1	validated	p.K201T	0.000	66	0%	39	51.3%	4	25%	possibly_damaging(0.81)	tolerated(0.15)	deleterious(0.546)	NULL
MGP	4256	genome.wustl.edu	37	12	15035966	15035966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000900.2	-1	validated	p.R37M	1.000	283	0.4%	56	30.4%	184	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMSmart_GLA
PTPRO	5800	genome.wustl.edu	37	12	15652400	15652400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030667.1	+1	reviewed	p.F178C	1.000	134	0%	70	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPS8	2059	genome.wustl.edu	37	12	15793722	15793722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004447.5	-1	reviewed	p.F579S	1.000	158	0%	57	45.6%	11	81.8%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
EPS8	2059	genome.wustl.edu	37	12	15803924	15803924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004447.5	-1	reviewed	p.E423*	1.000	338	0%	48	54.2%	10	10%	-	-	-	NULL
SLC15A5	729025	genome.wustl.edu	37	12	16342639	16342639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000344941	-1	known	p.F568S	0.877	150	0%	51	35.3%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
LMO3	55885	genome.wustl.edu	37	12	16753611	16753611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001395.1	-1	validated	p.L62I	1.000	269	0%	37	35.1%	10	60%	possibly_damaging(0.885)	deleterious(0)	deleterious(0.790)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PLCZ1	89869	genome.wustl.edu	37	12	18852832	18852832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033123.2	-1	provisional	p.K357T	1.000	83	0%	36	50%	0	-	possibly_damaging(0.731)	deleterious(0.03)	deleterious(0.631)	HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_PLC-like phosphodiesterases
PLCZ1	89869	genome.wustl.edu	37	12	18872401	18872401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033123.2	-1	provisional	p.Q178R	0.997	97	0%	43	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
PLCZ1	89869	genome.wustl.edu	37	12	18876401	18876401	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033123.2	-1	provisional	p.E71*	1.000	185	0%	45	51.1%	0	-	-	-	-	superfamily_EF-hand
PLEKHA5	54477	genome.wustl.edu	37	12	19489491	19489491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019012.3	+1	validated	p.D728Y	0.998	100	0%	181	43.6%	31	51.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PLEKHA5	54477	genome.wustl.edu	37	12	19511172	19511172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019012.3	+1	validated	p.R884I	1.000	48	0%	102	42.2%	24	20.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDE3A	5139	genome.wustl.edu	37	12	20803385	20803385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000921.3	+1	validated	p.D926Y	1.000	208	0.5%	115	40%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
SLCO1B1	10599	genome.wustl.edu	37	12	21353563	21353563	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006446.4	+1	reviewed	p.E364	0.982	332	0%	83	37.3%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
SLCO1A2	6579	genome.wustl.edu	37	12	21472353	21472353	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390670	-1	known	p.L3	0.003	366	0%	83	49.4%	0	-	-	-	-	NULL
GOLT1B	51026	genome.wustl.edu	37	12	21661390	21661390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016072.4	+1	validated	p.K64R	1.000	280	0%	317	45.4%	18	61.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Got1
GOLT1B	51026	genome.wustl.edu	37	12	21661480	21661480	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016072.4	+1	validated	p.F94C	1.000	94	0%	132	48.5%	15	60%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	HMMPfam_Got1
ABCC9	10060	genome.wustl.edu	37	12	21954066	21954066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020297.2	-1	reviewed	p.R1521Q	1.000	117	0%	34	38.2%	0	-	benign(0.013)	tolerated(0.38)	neutral(0.018)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ABCC9	10060	genome.wustl.edu	37	12	21995261	21995261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005691.2	-1	reviewed	p.R1154W	1.000	227	0%	74	54.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC9	10060	genome.wustl.edu	37	12	22025569	22025569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005691.2	-1	reviewed	p.H730Y	0.999	128	0%	29	37.9%	0	-	benign(0.051)	tolerated(1)	neutral(0.003)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
CMAS	55907	genome.wustl.edu	37	12	22208469	22208469	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018686.3	+1	reviewed	p.R162*	0.999	220	0%	260	39.2%	22	9%	-	-	-	HMMPfam_CTP_transf_3,superfamily_Nucleotide-diphospho-sugar transferases
SOX5	6660	genome.wustl.edu	37	12	23728661	23728661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006940.4	-1	reviewed	p.A426S	1.000	235	0%	75	40%	0	-	benign(0.019)	tolerated(0.8)	neutral(0.002)	NULL
LRMP	4033	genome.wustl.edu	37	12	25260755	25260755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006152.2	+1	reviewed	p.D421Y	0.000	140	0%	36	36.1%	1	0%	possibly_damaging(0.654)	tolerated(0.05)	deleterious(0.576)	HMMPfam_MRVI1
CASC1	55259	genome.wustl.edu	37	12	25297593	25297593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018272.3	-1	validated	p.F236L	0.070	327	0%	133	52.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CASC1	55259	genome.wustl.edu	37	12	25307254	25307254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018272.3	-1	validated	p.N146S	0.019	295	0%	251	42.6%	1	0%	benign(0.001)	tolerated(0.93)	-	NULL
CASC1	55259	genome.wustl.edu	37	12	25308311	25308311	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018272.3	-1	validated	p.L78	0.011	266	0%	298	51%	0	-	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25368419	25368419	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033360.2	-1	reviewed	p.K176Q	1.000	302	0%	336	42.6%	2	50%	benign(0.004)	tolerated(0.32)	neutral(0.024)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
IFLTD1	160492	genome.wustl.edu	37	12	25705867	25705867	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145728.1	-1	validated	p.E9D	0.001	586	0%	203	42.9%	0	-	possibly_damaging(0.801)	deleterious(0.03)	deleterious(0.666)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26634089	26634089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002223.2	-1	validated	p.R2033Q	1.000	106	0%	85	49.4%	12	58.3%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26812061	26812061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002223.2	-1	validated	p.R624I	1.000	235	0%	373	43.7%	5	20%	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_RYDR_ITPR
ITPR2	3709	genome.wustl.edu	37	12	26877666	26877666	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002223.2	-1	validated	p.E97*	1.000	246	0%	177	45.8%	2	0%	-	-	-	HMMPfam_Ins145_P3_rec
ASUN	55726	genome.wustl.edu	37	12	27078707	27078707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018164.2	-1	validated	p.R221H	1.000	150	0%	113	39.8%	22	68.1%	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_DUF2151
TM7SF3	51768	genome.wustl.edu	37	12	27128568	27128568	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016551.2	-1	validated	p.V437	0.001	192	0%	60	40%	61	44.2%	unknown(0)	tolerated(0.33)	-	NULL
ARNTL2	56938	genome.wustl.edu	37	12	27533181	27533181	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020183.3	+1	provisional	p.E110*	1.000	115	0%	56	46.4%	7	42.8%	-	-	-	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
ARNTL2	56938	genome.wustl.edu	37	12	27555570	27555570	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020183.3	+1	provisional	p.G479	0.036	179	0%	180	45%	8	75%	-	-	-	NULL
CCDC91	55297	genome.wustl.edu	37	12	28412339	28412339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018318.3	+1	validated	p.T25A	0.383	341	0%	51	15.7%	12	8.3%	benign(0.098)	tolerated(0.08)	neutral(0.307)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29604479	29604479	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183378.2	-1	validated	p.E852*	0.001	108	0%	20	35%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TMTC1	83857	genome.wustl.edu	37	12	29670431	29670431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175861.2	-1	provisional	p.E592K	0.748	122	0%	34	47.1%	2	0%	benign(0.009)	tolerated(0.97)	neutral(0.001)	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_Protein prenylyltransferase,superfamily_TPR-like
IPO8	10526	genome.wustl.edu	37	12	30818244	30818244	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006390.2	-1	reviewed	e13-1	1.000	95	0%	112	39.3%	0	-	-	-	-	-
CAPRIN2	65981	genome.wustl.edu	37	12	30881800	30881800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002259.1	-1	validated	p.E522K	0.038	368	0%	72	43.1%	6	16.6%	benign(0.141)	deleterious(0)	neutral(0.457)	NULL
OVOS2	144203	genome.wustl.edu	37	12	31279350	31279350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343151.1	-1	model	p.A1135T	0.981	338	0%	276	30.1%	1	0%	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
OVOS2	144203	genome.wustl.edu	37	12	31282698	31282698	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343151.1	-1	model	p.S1062	0.271	198	0%	71	40.8%	1	0%	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
OVOS2	144203	genome.wustl.edu	37	12	31289625	31289625	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343151.1	-1	model	p.E712*	0.002	214	0%	62	24.2%	1	0%	-	-	-	NULL
OVOS2	144203	genome.wustl.edu	37	12	31291174	31291174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343151.1	-1	model	p.N663T	0.999	411	0%	184	28.3%	0	-	-	-	-	NULL
OVOS2	144203	genome.wustl.edu	37	12	31302352	31302352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343151.1	-1	model	p.Q314R	1.000	226	0%	121	40.5%	0	-	-	-	-	NULL
DENND5B	160518	genome.wustl.edu	37	12	31613208	31613208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144973.3	-1	validated	p.L338I	1.000	112	0%	111	41.4%	4	50%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_DENN,HMMSmart_SM00799
METTL20	254013	genome.wustl.edu	37	12	31820654	31820654	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135863.1	+1	validated	p.I173M	0.994	63	0%	73	53.4%	0	-	benign(0.01)	tolerated(0.12)	neutral(0.261)	HMMPfam_Methyltransf_16,superfamily_SSF53335
C12orf35	55196	genome.wustl.edu	37	12	32134592	32134592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018169.3	+1	validated	p.N235H	0.000	43	0%	37	56.8%	22	59%	benign(0.024)	deleterious(0)	neutral(0.446)	NULL
DNM1L	10059	genome.wustl.edu	37	12	32884003	32884003	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012062.3	+1	reviewed	p.E379*	1.000	211	0%	304	50%	39	5.1%	-	-	-	HMMPfam_Dynamin_M
DNM1L	10059	genome.wustl.edu	37	12	32892962	32892962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380998	+1	known	p.D11Y	0.005	406	0%	314	18.2%	3	0%	-	-	-	NULL
ALG10	84920	genome.wustl.edu	37	12	34179264	34179264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032834.3	+1	reviewed	p.R279Q	0.999	412	0%	275	48%	7	14.2%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_DIE2_ALG10
ALG10B	144245	genome.wustl.edu	37	12	38714532	38714532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013620.3	+1	validated	p.K313N	0.000	173	0%	312	34.3%	1	100%	benign(0.012)	tolerated(0.47)	neutral(0.011)	HMMPfam_DIE2_ALG10
KIF21A	55605	genome.wustl.edu	37	12	39705328	39705328	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017641.3	-1	validated	p.S1316	0.029	131	0%	51	47.1%	4	0%	-	-	-	superfamily_WD40 repeat-like
KIF21A	55605	genome.wustl.edu	37	12	39731002	39731002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017641.3	-1	validated	p.R759C	1.000	259	0%	112	43.8%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40 repeat-like
KIF21A	55605	genome.wustl.edu	37	12	39750644	39750644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017641.3	-1	validated	p.E487K	1.000	202	0%	98	45.9%	2	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
KIF21A	55605	genome.wustl.edu	37	12	39760271	39760271	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017641.3	-1	validated	p.E262*	1.000	244	0%	67	50.7%	3	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF21A	55605	genome.wustl.edu	37	12	39760882	39760882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017641.3	-1	validated	p.I229V	1.000	221	0%	53	34%	3	0%	benign(0.012)	tolerated(0.06)	neutral(0.323)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCD2	225	genome.wustl.edu	37	12	40001403	40001403	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005164.3	-1	reviewed	p.E412*	1.000	61	0%	47	42.6%	0	-	-	-	-	NULL
ABCD2	225	genome.wustl.edu	37	12	40013025	40013025	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005164.3	-1	reviewed	p.I131	0.516	124	0%	89	41.6%	0	-	-	-	-	HMMPfam_ABC_membrane_2
C12orf40	283461	genome.wustl.edu	37	12	40076805	40076805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031748.2	+1	validated	p.S360L	0.003	58	0%	49	42.9%	0	-	probably_damaging(0.99)	-	-	NULL
C12orf40	283461	genome.wustl.edu	37	12	40085894	40085894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031748.2	+1	validated	p.R464Q	0.000	46	0%	46	47.8%	0	-	benign(0.002)	-	-	NULL
C12orf40	283461	genome.wustl.edu	37	12	40114671	40114671	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031748.2	+1	validated	p.N526T	0.000	62	0%	13	53.8%	0	-	benign(0)	-	-	NULL
SLC2A13	114134	genome.wustl.edu	37	12	40422198	40422198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052885.3	-1	validated	p.R277I	0.802	77	0%	50	56%	1	0%	possibly_damaging(0.446)	tolerated(0.14)	neutral(0.395)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
LRRK2	120892	genome.wustl.edu	37	12	40637380	40637380	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198578.3	+1	reviewed	p.G245	1.000	246	0%	70	32.9%	1	100%	-	-	-	superfamily_ARM-type_fold
LRRK2	120892	genome.wustl.edu	37	12	40716129	40716129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198578.3	+1	reviewed	p.L1776I	1.000	346	0.3%	135	45.2%	0	-	benign(0.353)	deleterious(0.04)	neutral(0.460)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40740597	40740597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198578.3	+1	reviewed	p.N2051S	1.000	200	0%	128	46.1%	1	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	superfamily_Kinase_like,HMMPfam_Pkinase
CNTN1	1272	genome.wustl.edu	37	12	41323788	41323788	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001843.2	+1	reviewed	p.L229	0.997	370	0%	20	65%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PDZRN4	29951	genome.wustl.edu	37	12	41585270	41585270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000402685	+1	known	p.H220R	0.610	56	0%	140	40%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	superfamily_PDZ domain-like
PDZRN4	29951	genome.wustl.edu	37	12	41961623	41961623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013377.3	+1	validated	p.F244L	1.000	125	0%	21	38.1%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
YAF2	10138	genome.wustl.edu	37	12	42555435	42555435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005748.3	-1	reviewed	p.K95N	1.000	296	0%	311	39.9%	27	40.7%	benign(0.046)	tolerated(0.16)	neutral(0.062)	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43769299	43769299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025003.3	-1	validated	p.Q1777K	1.000	259	0%	147	40.8%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_GON
ADAMTS20	80070	genome.wustl.edu	37	12	43847741	43847741	+	Missense_Mutation	SNP	C	C	T	rs143824237	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025003.3	-1	validated	p.E577K	1.000	185	0%	42	50%	0	-	benign(0)	tolerated(1)	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PUS7L	83448	genome.wustl.edu	37	12	44130329	44130329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098614.1	-1	validated	p.R527H	1.000	216	0%	112	45.5%	5	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
PUS7L	83448	genome.wustl.edu	37	12	44148826	44148826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098614.1	-1	validated	p.L75I	0.000	411	0%	264	44.7%	5	40%	benign(0)	tolerated(0.55)	neutral(0.007)	superfamily_PsdUridine_synth_cat_dom
IRAK4	51135	genome.wustl.edu	37	12	44180261	44180261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114182.2	+1	reviewed	p.K416N	0.038	16	0%	35	60%	10	50%	benign(0.14)	tolerated(0.1)	neutral(0.298)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TWF1	5756	genome.wustl.edu	37	12	44191233	44191233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002822.3	-1	reviewed	p.I245S	0.002	89	0%	130	36.2%	46	54.3%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
TMEM117	84216	genome.wustl.edu	37	12	44238575	44238575	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032256.1	+1	provisional	p.E41*	1.000	139	0%	212	40.1%	3	33.3%	-	-	-	NULL
TMEM117	84216	genome.wustl.edu	37	12	44537360	44537360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032256.1	+1	provisional	p.R148Q	1.000	154	0%	93	35.5%	7	57.1%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	NULL
TMEM117	84216	genome.wustl.edu	37	12	44782137	44782137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032256.1	+1	provisional	p.F409L	1.000	267	0%	54	44.4%	14	42.8%	possibly_damaging(0.775)	tolerated(0.15)	deleterious(0.529)	NULL
ANO6	196527	genome.wustl.edu	37	12	45795802	45795802	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142679.1	+1	validated	p.F537	0.228	161	0%	73	42.5%	12	66.6%	-	-	-	NULL
ARID2	196528	genome.wustl.edu	37	12	46205287	46205287	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152641.2	+1	validated	p.I124S	1.000	197	0%	67	52.2%	3	33.3%	benign(0.304)	tolerated(0.07)	neutral(0.413)	NULL
ARID2	196528	genome.wustl.edu	37	12	46211620	46211620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152641.2	+1	validated	p.D196Y	1.000	170	0%	71	42.3%	5	20%	probably_damaging(0.986)	tolerated(1)	neutral(0.434)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46320332	46320332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004719.2	-1	validated	p.R1051I	1.000	120	0%	98	43.9%	30	46.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RPAP3	79657	genome.wustl.edu	37	12	48090144	48090144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024604.2	-1	reviewed	p.D154Y	1.000	254	0%	113	40.7%	19	63.1%	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ENDOU	8909	genome.wustl.edu	37	12	48106394	48106394	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006025.3	-1	reviewed	p.K252Q	1.000	82	1.2%	66	39.4%	0	-	probably_damaging(0.997)	tolerated(0.36)	deleterious(0.486)	HMMPfam_XendoU
ENDOU	8909	genome.wustl.edu	37	12	48110811	48110811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006025.3	-1	reviewed	p.K97R	0.307	365	0%	158	46.2%	0	-	benign(0.235)	tolerated(0.23)	neutral(0.065)	HMMPfam_XendoU
COL2A1	1280	genome.wustl.edu	37	12	48389075	48389075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001844.4	-1	reviewed	p.R242H	1.000	71	0%	95	47.4%	6	50%	unknown(0)	deleterious(0.02)	-	HMMPfam_Collagen
OR10AD1	121275	genome.wustl.edu	37	12	48596425	48596425	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004134.1	-1	provisional	p.T217	0.921	237	0%	83	47%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C12orf54	121273	genome.wustl.edu	37	12	48888661	48888661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152319.3	+1	validated	p.G108D	0.000	101	0%	68	45.6%	0	-	benign(0.164)	-	-	NULL
KANSL2	54934	genome.wustl.edu	37	12	49048753	49048753	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017822.3	-1	validated	p.E440*	1.000	250	0%	123	46.3%	36	58.3%	-	-	-	NULL
RND1	27289	genome.wustl.edu	37	12	49251994	49251994	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014470.3	-1	validated	p.E162*	1.000	130	0%	97	46.4%	2	100%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC65	85478	genome.wustl.edu	37	12	49298128	49298128	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033124.4	+1	validated	p.K3	0.955	94	0%	28	32.1%	2	50%	-	-	-	NULL
WNT1	7471	genome.wustl.edu	37	12	49374338	49374338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005430.3	+1	reviewed	p.D164N	1.000	26	0.000	9	0.444	0	-	possibly_damaging(0.555)	tolerated(0.26)	neutral(0.224)	HMMPfam_wnt,HMMSmart_SM00097
MLL2	8085	genome.wustl.edu	37	12	49420374	49420374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003482.3	-1	validated	p.F5125L	1.000	38	0%	22	22.7%	25	48%	unknown(0)	-	-	HMMSmart_SM00184,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
DNAJC22	79962	genome.wustl.edu	37	12	49743452	49743452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024902.2	+1	provisional	p.F266S	1.000	104	0%	118	15.3%	19	5.2%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
FAM186B	84070	genome.wustl.edu	37	12	49994388	49994388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032130.2	-1	validated	p.E345D	0.000	162	0%	84	44%	1	0%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
FMNL3	91010	genome.wustl.edu	37	12	50045814	50045814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175736.4	-1	validated	p.D502G	0.835	33	0%	18	44.4%	6	33.3%	benign(0.093)	tolerated(0.44)	neutral(0.019)	NULL
ASIC1	41	genome.wustl.edu	37	12	50471087	50471087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020039.2	+1	reviewed	p.G217V	1.000	41	0%	14	42.9%	0	-	unknown(0)	-	-	HMMPfam_ASC
FAM186A	121006	genome.wustl.edu	37	12	50725461	50725461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145475.1	-1	provisional	p.K2280N	0.816	230	0%	213	39%	0	-	benign(0.022)	deleterious(0.04)	neutral(0.350)	NULL
FAM186A	121006	genome.wustl.edu	37	12	50749696	50749696	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145475.1	-1	provisional	p.R307*	0.000	287	0%	252	46.8%	0	-	-	-	-	NULL
DIP2B	57609	genome.wustl.edu	37	12	51069202	51069202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173602.2	+1	validated	p.F296C	1.000	113	0%	215	41.4%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51072680	51072680	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000455310	+1	known	p.I389L	0.000	27	0%	19	57.9%	0	-	unknown(0)	-	-	NULL
ATF1	466	genome.wustl.edu	37	12	51213529	51213529	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005171.3	+1	validated	p.T261	0.992	22	0%	42	52.4%	24	54.1%	-	-	-	HMMSmart_BRLZ,HMMPfam_bZIP_1
TFCP2	7024	genome.wustl.edu	37	12	51497497	51497497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005653.4	-1	reviewed	p.R339Q	1.000	184	0%	167	55.1%	17	58.8%	benign(0.134)	tolerated(0.35)	neutral(0.032)	superfamily_SAM/Pointed domain
BIN2	51411	genome.wustl.edu	37	12	51685945	51685945	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016293.2	-1	validated	p.L315	0.317	65	0%	95	43.2%	4	0%	-	-	-	NULL
CELA1	1990	genome.wustl.edu	37	12	51736400	51736400	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001971.5	-1	reviewed	p.I95	0.000	119	0%	48	35.4%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SLC4A8	9498	genome.wustl.edu	37	12	51888782	51888782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039960.1	+1	validated	p.F941L	0.297	353	0%	116	52.6%	0	-	benign(0.004)	tolerated(0.69)	neutral(0.002)	HMMPfam_HCO3_cotransp
SCN8A	6334	genome.wustl.edu	37	12	52159701	52159701	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014191.2	+1	reviewed	p.R931*	1.000	392	0%	112	40.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52162754	52162754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014191.2	+1	reviewed	p.R1003C	1.000	110	0.9%	55	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52180440	52180440	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014191.2	+1	reviewed	p.Y1353D	1.000	183	0%	91	44%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52183184	52183184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014191.2	+1	reviewed	p.F1467L	1.000	230	0%	175	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
ACVR1B	91	genome.wustl.edu	37	12	52374887	52374887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004302.3	+1	reviewed	p.R239S	1.000	142	0%	89	32.6%	13	7.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KRT84	3890	genome.wustl.edu	37	12	52779233	52779233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033045.3	-1	reviewed	p.G46D	0.995	71	0%	70	48.6%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
KRT6B	3854	genome.wustl.edu	37	12	52845715	52845715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005555.3	-1	reviewed	p.A50T	0.002	186	0%	70	35.7%	0	-	unknown(0)	tolerated(0.43)	-	NULL
KRT6A	3853	genome.wustl.edu	37	12	52881561	52881561	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005554.3	-1	reviewed	p.S546	0.981	410	0%	90	51.1%	0	-	-	-	-	NULL
KRT6A	3853	genome.wustl.edu	37	12	52881705	52881705	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005554.3	-1	reviewed	p.G498	0.012	403	0.5%	97	35.1%	0	-	-	-	-	NULL
ENSG00000248214	0	genome.wustl.edu	37	12	53008642	53008642	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000507911	+1	known	NULL	0.001	10	0%	22	45.5%	0	-	-	-	-	-
KRT2	3849	genome.wustl.edu	37	12	53041592	53041592	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000423.2	-1	reviewed	p.K390N	0.000	161	0%	51	66.7%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_Filament
KRT1	3848	genome.wustl.edu	37	12	53070144	53070144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006121.3	-1	reviewed	p.D464N	0.999	220	0%	71	49.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prefoldin,HMMPfam_Filament
KRT76	51350	genome.wustl.edu	37	12	53169369	53169369	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015848.4	-1	reviewed	p.Q206	1.000	68	0%	63	38.1%	0	-	-	-	-	HMMPfam_Filament
HOXC5	3222	genome.wustl.edu	37	12	54426933	54426933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018953.2	+1	reviewed	p.F9L	1.000	24	0%	44	13.6%	1	100%	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
ITGA5	3678	genome.wustl.edu	37	12	54799009	54799009	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002205.2	-1	reviewed	p.F389C	1.000	35	0%	14	64.3%	14	7.1%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_Int_alpha,superfamily_SSF69318
NCKAP1L	3071	genome.wustl.edu	37	12	54891668	54891668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005337.4	+1	reviewed	p.I32N	1.000	106	0%	51	43.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nckap1
NCKAP1L	3071	genome.wustl.edu	37	12	54925974	54925974	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005337.4	+1	reviewed	p.P934	0.884	339	0%	141	34%	2	0%	-	-	-	HMMPfam_Nckap1
PDE1B	5153	genome.wustl.edu	37	12	54966478	54966478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000924.3	+1	validated	p.D230N	0.994	322	0%	164	50%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
NEUROD4	58158	genome.wustl.edu	37	12	55420789	55420789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021191.2	+1	validated	p.K189T	1.000	138	0%	27	48.1%	0	-	probably_damaging(0.999)	tolerated(0.49)	deleterious(0.501)	NULL
NEUROD4	58158	genome.wustl.edu	37	12	55421025	55421025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021191.2	+1	validated	p.D268Y	1.000	278	0%	49	44.9%	0	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
OR9K2	441639	genome.wustl.edu	37	12	55524303	55524303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005243.1	+1	provisional	p.L251I	0.082	222	0%	44	52.3%	0	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6C6	283365	genome.wustl.edu	37	12	55688128	55688128	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005493.1	-1	provisional	p.E297*	0.568	77	0%	43	46.5%	0	-	-	-	-	superfamily_SSF81321
OR6C6	283365	genome.wustl.edu	37	12	55688221	55688221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005493.1	-1	provisional	p.V266L	0.011	159	0%	48	29.2%	0	-	possibly_damaging(0.939)	tolerated(0.24)	neutral(0.422)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C6	283365	genome.wustl.edu	37	12	55688437	55688437	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005493.1	-1	provisional	p.E194*	0.088	129	0%	27	14.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6C3	254786	genome.wustl.edu	37	12	55725977	55725977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054104.1	+1	provisional	p.Y165D	0.628	465	0%	147	13.6%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C76	390326	genome.wustl.edu	37	12	55820394	55820394	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005183.1	+1	provisional	p.C119*	0.391	56	0%	22	50%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6C68	403284	genome.wustl.edu	37	12	55886217	55886217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005519.1	+1	provisional	p.P24H	0.006	235	0%	110	41.8%	0	-	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	superfamily_Family A G protein-coupled receptor-like
OR10P1	121130	genome.wustl.edu	37	12	56031542	56031542	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206899.1	+1	provisional	p.I289	1.000	95	0%	41	53.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DNAJC14	85406	genome.wustl.edu	37	12	56215920	56215920	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032364.5	-1	validated	p.I650	0.997	228	0%	103	39.8%	46	43.4%	-	-	-	NULL
RAB5B	5869	genome.wustl.edu	37	12	56385883	56385883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002868.2	+1	validated	p.K179E	1.000	108	0%	68	44.1%	90	51.1%	benign(0.057)	tolerated(0.08)	neutral(0.303)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ERBB3	2065	genome.wustl.edu	37	12	56477631	56477631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001982.2	+1	reviewed	p.M60R	1.000	141	0%	80	47.5%	31	51.6%	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	HMMPfam_Recep_L_domain,superfamily_L domain-like
RBMS2	5939	genome.wustl.edu	37	12	56965535	56965535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002898.3	+1	reviewed	p.M146I	1.000	168	0%	84	40.5%	7	71.4%	benign(0.108)	tolerated(0.13)	neutral(0.261)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ATP5B	506	genome.wustl.edu	37	12	57033030	57033030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001686.3	-1	reviewed	p.D450G	1.000	100	0%	100	46%	785	44%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase
ATP5B	506	genome.wustl.edu	37	12	57033775	57033775	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001686.3	-1	reviewed	p.K426Q	1.000	91	0%	59	44.1%	737	44.9%	possibly_damaging(0.703)	deleterious(0.03)	deleterious(0.617)	HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase
SNORD59A	26789	genome.wustl.edu	37	12	57038874	57038874	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_002737.1	-1	provisional	NULL	1.000	32	0%	47	42.6%	1	0%	-	-	-	-
NACA	4666	genome.wustl.edu	37	12	57114547	57114547	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113203.1	-1	validated	p.I256S	0.703	179	0%	98	42.9%	0	-	unknown(0)	tolerated(0.08)	-	NULL
ZBTB39	9880	genome.wustl.edu	37	12	57397315	57397315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014830.1	-1	provisional	p.D463Y	1.000	46	0%	31	51.6%	3	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB39	9880	genome.wustl.edu	37	12	57397486	57397486	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014830.1	-1	provisional	p.E406*	1.000	105	0%	82	51.2%	8	25%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MYO1A	4640	genome.wustl.edu	37	12	57431356	57431356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005379.2	-1	reviewed	p.K677N	1.000	232	0%	81	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
LRP1	4035	genome.wustl.edu	37	12	57554769	57554769	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002332.2	+1	reviewed	p.I691	0.998	94	0%	25	28%	4	0%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
LRP1	4035	genome.wustl.edu	37	12	57573650	57573650	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002332.2	+1	reviewed	p.I1684	0.998	101	0%	44	29.5%	14	21.4%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
R3HDM2	22864	genome.wustl.edu	37	12	57648612	57648612	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014925.3	-1	validated	p.R959*	1.000	95	0%	79	49.4%	28	42.8%	-	-	-	NULL
R3HDM2	22864	genome.wustl.edu	37	12	57691902	57691902	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014925.3	-1	validated	p.F157L	1.000	223	0%	198	43.4%	13	46.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00393
ARHGAP9	64333	genome.wustl.edu	37	12	57871263	57871263	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032496.2	-1	reviewed	p.P245	0.491	43	0%	34	41.2%	2	0%	-	-	-	superfamily_WW_Rsp5_WWP
MARS	4141	genome.wustl.edu	37	12	57882802	57882802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004990.2	+1	reviewed	p.D37G	1.000	73	0%	112	43.8%	39	43.5%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57976962	57976962	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004984.2	+1	reviewed	p.*1033Y	1.000	150	0%	42	38.1%	0	-	-	-	-	NULL
ENSG00000247039	0	genome.wustl.edu	37	12	58014528	58014528	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000501036	-1	known	NULL	0.000	12	0.000	9	0.556	0	-	-	-	-	-
CYP27B1	1594	genome.wustl.edu	37	12	58157527	58157527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000785.3	-1	reviewed	p.S427Y	0.371	78	0%	52	38.5%	3	0%	possibly_damaging(0.903)	deleterious(0.04)	deleterious(0.707)	HMMPfam_p450,superfamily_Cytochrome P450
AVIL	10677	genome.wustl.edu	37	12	58191780	58191780	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006576.3	-1	reviewed	e19-2	1.000	135	0%	156	36.5%	0	-	-	-	-	-
LRIG3	121227	genome.wustl.edu	37	12	59266381	59266381	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153377.3	-1	provisional	p.N1111	1.000	143	0%	57	47.4%	30	56.6%	-	-	-	NULL
MON2	23041	genome.wustl.edu	37	12	62928637	62928637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015026.2	+1	validated	p.V549A	1.000	208	0.5%	151	39.1%	6	33.3%	benign(0.019)	deleterious(0.01)	neutral(0.407)	NULL
PPM1H	57460	genome.wustl.edu	37	12	63182107	63182107	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020700.1	-1	validated	p.I256	0.966	170	0%	140	40%	13	46.1%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
DPY19L2	283417	genome.wustl.edu	37	12	64020267	64020267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173812.4	-1	validated	p.F281L	1.000	37	0%	43	46.5%	0	-	benign(0.043)	deleterious(0.02)	neutral(0.386)	HMMPfam_DUF2211
C12orf56	115749	genome.wustl.edu	37	12	64746762	64746762	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099676.2	-1	validated	p.S109	0.934	104	0%	147	45.6%	0	-	-	-	-	NULL
XPOT	11260	genome.wustl.edu	37	12	64833092	64833092	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007235.3	+1	reviewed	p.I934M	0.763	195	0%	134	53%	50	50%	benign(0.026)	tolerated(0.08)	neutral(0.301)	NULL
TBK1	29110	genome.wustl.edu	37	12	64882309	64882309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013254.2	+1	reviewed	p.K461N	1.000	60	0%	60	36.7%	19	31.5%	benign(0.015)	tolerated(0.33)	neutral(0.025)	NULL
GNS	2799	genome.wustl.edu	37	12	65115466	65115466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002076.3	-1	reviewed	p.V443A	1.000	171	0%	73	49.3%	60	48.3%	possibly_damaging(0.751)	tolerated(0.59)	neutral(0.280)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
WIF1	11197	genome.wustl.edu	37	12	65461549	65461549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007191.4	-1	reviewed	p.R187Q	1.000	104	0%	20	60%	22	54.5%	possibly_damaging(0.881)	tolerated(0.62)	neutral(0.348)	HMMSmart_EGF,HMMPfam_EGF_2
LEMD3	23592	genome.wustl.edu	37	12	65640070	65640070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014319.4	+1	reviewed	p.R901W	1.000	151	0%	103	11.7%	16	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IRAK3	11213	genome.wustl.edu	37	12	66641570	66641570	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007199.2	+1	reviewed	p.F470	0.570	242	0%	159	43.4%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
IRAK3	11213	genome.wustl.edu	37	12	66641872	66641872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007199.2	+1	reviewed	p.S571Y	0.009	90	0%	79	12.7%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
HELB	92797	genome.wustl.edu	37	12	66715760	66715760	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033647.2	+1	reviewed	p.E730*	0.984	127	0%	184	39.1%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
HELB	92797	genome.wustl.edu	37	12	66725267	66725267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033647.2	+1	reviewed	p.E1002K	0.000	172	0%	36	41.7%	0	-	benign(0.014)	tolerated(0.8)	neutral(0.001)	NULL
GRIP1	23426	genome.wustl.edu	37	12	66923614	66923614	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021150.3	-1	reviewed	p.R167*	1.000	327	0%	105	40%	3	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CAND1	55832	genome.wustl.edu	37	12	67675730	67675730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018448.3	+1	validated	p.D37Y	1.000	258	0.4%	202	44.1%	22	13.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
CAND1	55832	genome.wustl.edu	37	12	67691341	67691341	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018448.3	+1	validated	p.E216*	1.000	273	0%	80	41.2%	20	5%	-	-	-	superfamily_ARM repeat
CAND1	55832	genome.wustl.edu	37	12	67699485	67699485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018448.3	+1	validated	p.K679N	1.000	94	0%	41	46.3%	31	83.8%	benign(0)	tolerated(0.46)	neutral(0.012)	superfamily_ARM repeat
CAND1	55832	genome.wustl.edu	37	12	67703762	67703762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018448.3	+1	validated	p.N1036T	1.000	189	0%	73	45.2%	50	76%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
DYRK2	8445	genome.wustl.edu	37	12	68052047	68052047	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006482.2	+1	reviewed	p.N454H	1.000	84	0%	62	46.8%	14	28.5%	possibly_damaging(0.903)	tolerated(0.53)	neutral(0.365)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IFNG	3458	genome.wustl.edu	37	12	68551724	68551724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000619.2	-1	reviewed	p.R112Q	0.000	166	0%	169	11.8%	1	0%	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
IFNG	3458	genome.wustl.edu	37	12	68552003	68552003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000619.2	-1	reviewed	p.L51I	0.651	94	0%	115	38.3%	1	0%	possibly_damaging(0.56)	tolerated(0.33)	neutral(0.215)	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
IFNG	3458	genome.wustl.edu	37	12	68553283	68553283	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000619.2	-1	reviewed	p.F38C	0.998	64	0%	80	48.7%	0	-	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMPfam_IFN-gamma,superfamily_4-helical cytokines
MDM1	56890	genome.wustl.edu	37	12	68707475	68707475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017440.4	-1	reviewed	p.E520*	1.000	108	0%	116	45.7%	6	33.3%	-	-	-	NULL
CPM	1368	genome.wustl.edu	37	12	69326590	69326590	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005502.2	-1	reviewed	p.L10	1.000	76	0%	63	46%	0	-	-	-	-	NULL
FRS2	10818	genome.wustl.edu	37	12	69965133	69965133	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042555.1	+1	validated	p.N111H	1.000	129	0%	93	34.4%	12	58.3%	benign(0.248)	deleterious(0.02)	neutral(0.408)	superfamily_SSF50729
CCT2	10576	genome.wustl.edu	37	12	69981998	69981998	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006431.2	+1	reviewed	p.T134	1.000	67	0%	74	47.3%	224	44.1%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
CCT2	10576	genome.wustl.edu	37	12	69986773	69986773	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006431.2	+1	reviewed	p.V256	0.993	108	0%	140	52.9%	229	50.2%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
BEST3	144453	genome.wustl.edu	37	12	70049312	70049312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032735.2	-1	validated	p.T461K	0.068	202	0%	31	41.9%	0	-	benign(0)	tolerated(1)	-	NULL
BEST3	144453	genome.wustl.edu	37	12	70091472	70091472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032735.2	-1	validated	p.F36S	1.000	70	0%	85	45.9%	0	-	possibly_damaging(0.897)	deleterious(0)	deleterious(0.798)	HMMPfam_Bestrophin
PTPRB	5787	genome.wustl.edu	37	12	70974964	70974964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001109754.1	-1	reviewed	p.E810D	1.000	209	0%	78	48.7%	0	-	benign(0.152)	tolerated(0.69)	neutral(0.015)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRB	5787	genome.wustl.edu	37	12	70986133	70986133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001109754.1	-1	reviewed	p.R570Q	0.998	106	0.9%	41	46.3%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRB	5787	genome.wustl.edu	37	12	70990064	70990064	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001109754.1	-1	reviewed	p.T341	0.004	168	0%	76	39.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRR	5801	genome.wustl.edu	37	12	71054868	71054868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002849.2	-1	reviewed	p.H540N	1.000	341	0%	28	42.9%	3	100%	benign(0.003)	tolerated(0.12)	neutral(0.261)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRR	5801	genome.wustl.edu	37	12	71056341	71056341	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002849.2	-1	reviewed	p.K514N	0.992	333	0%	153	49%	2	0%	benign(0.095)	tolerated(0.36)	neutral(0.027)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRR	5801	genome.wustl.edu	37	12	71155265	71155265	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002849.2	-1	reviewed	p.E205*	1.000	143	0%	86	39.5%	0	-	-	-	-	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72013096	72013096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144982.4	-1	validated	p.R1715W	1.000	114	0%	76	50%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72278606	72278606	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000472611	+1	known	p.E74*	1.000	252	0%	98	37.8%	11	27.2%	-	-	-	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72278772	72278772	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022771.4	+1	reviewed	p.E175D	0.225	364	0%	131	42%	14	64.2%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72290536	72290536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022771.4	+1	reviewed	p.R372K	1.000	106	0%	46	41.3%	16	81.2%	benign(0.226)	tolerated(0.18)	neutral(0.079)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
KCNC2	3747	genome.wustl.edu	37	12	75436911	75436911	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139137.2	-1	reviewed	p.R631*	1.000	188	0%	31	54.8%	0	-	-	-	-	NULL
GLIPR1	11010	genome.wustl.edu	37	12	75874699	75874699	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006851.2	+1	reviewed	p.S13	0.000	195	0%	52	44.2%	5	20%	-	-	-	superfamily_SCP-like_extracellular
KRR1	11103	genome.wustl.edu	37	12	75893673	75893673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007043.6	-1	validated	p.K354N	0.998	303	0.7%	103	40.8%	81	46.9%	possibly_damaging(0.952)	tolerated(0.16)	neutral(0.455)	NULL
OSBPL8	114882	genome.wustl.edu	37	12	76784319	76784319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020841.4	-1	reviewed	p.S350G	1.000	479	0%	251	43%	7	71.4%	benign(0.007)	tolerated(0.24)	neutral(0.037)	NULL
OSBPL8	114882	genome.wustl.edu	37	12	76791674	76791674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020841.4	-1	reviewed	p.R158C	1.000	125	0%	89	51.7%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZDHHC17	23390	genome.wustl.edu	37	12	77235801	77235801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015336.2	+1	validated	p.N394S	1.000	243	0%	124	48.4%	4	50%	benign(0.013)	tolerated(1)	neutral(0.001)	NULL
CSRP2	1466	genome.wustl.edu	37	12	77253340	77253340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001321.1	-1	reviewed	p.E164D	1.000	217	0%	180	47.8%	225	46.2%	benign(0.006)	tolerated(0.2)	neutral(0.049)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NAV3	89795	genome.wustl.edu	37	12	78513106	78513106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014903.4	+1	validated	p.S1044R	1.000	77	0%	37	40.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NAV3	89795	genome.wustl.edu	37	12	78516053	78516053	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014903.4	+1	validated	p.P1361	0.113	112	0%	24	45.8%	0	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78516178	78516178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014903.4	+1	validated	p.T1403M	1.000	92	0%	31	45.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIR1252	100302136	genome.wustl.edu	37	12	79813097	79813097	+	RNA	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000408861	+1	known	NULL	0.004	368	0%	120	38.3%	0	-	-	-	-	-
OTOGL	283310	genome.wustl.edu	37	12	80648836	80648836	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000455751	+1	known	p.*169S	0.967	210	0%	99	56.6%	0	-	-	-	-	HMMPfam_VWD
OTOGL	283310	genome.wustl.edu	37	12	80648928	80648928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343203.1	+1	model	p.K458T	0.999	168	0%	81	35.8%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80650175	80650175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343203.1	+1	model	p.K490R	1.000	281	0%	78	42.3%	0	-	benign(0.424)	tolerated(0.76)	neutral(0.139)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80661044	80661044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343203.1	+1	model	p.R742H	0.955	101	0%	35	42.9%	0	-	benign(0.257)	deleterious(0.03)	neutral(0.391)	superfamily_Serine proterase inhibitors
OTOGL	283310	genome.wustl.edu	37	12	80690709	80690709	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343203.1	+1	model	p.E916*	1.000	87	0%	71	53.5%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80732870	80732870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343203.1	+1	model	p.I1523V	0.007	215	0%	96	50%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_VWD,HMMSmart_SM00216
PTPRQ	374462	genome.wustl.edu	37	12	80889019	80889019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000266688	+1	known	p.S584Y	1.000	39	0%	22	40.9%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80889785	80889785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000266688	+1	known	p.K630N	1.000	60	0%	27	40.7%	0	-	possibly_damaging(0.845)	tolerated(0.19)	neutral(0.373)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80890055	80890055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000266688	+1	known	p.E673K	0.010	34	0.000	9	0.556	1	0%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	80982119	80982119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000266688	+1	known	p.E1499D	0.209	119	0%	44	40.9%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	81028766	81028766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000266688	+1	known	p.Q1943H	0.994	139	0%	32	50%	1	100%	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	81046547	81046547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000266688	+1	known	p.L2017I	1.000	93	0%	40	55%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRQ	374462	genome.wustl.edu	37	12	81062915	81062915	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000266688	+1	known	p.G2108*	1.000	90	0%	15	40%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
MYF6	4618	genome.wustl.edu	37	12	81102374	81102374	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002469.2	+1	reviewed	p.L197	0.998	45	0%	25	40%	0	-	-	-	-	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81675102	81675102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003625.2	-1	reviewed	p.R1049I	1.000	109	0%	56	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
PPFIA2	8499	genome.wustl.edu	37	12	81851582	81851582	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003625.2	-1	reviewed	p.E123*	1.000	212	0%	213	19.7%	0	-	-	-	-	NULL
C12orf26	84190	genome.wustl.edu	37	12	82792980	82792980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032230.2	+1	validated	p.S313Y	0.999	77	0%	55	47.3%	1	100%	benign(0.136)	deleterious(0.03)	neutral(0.376)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85441177	85441177	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079910.1	+1	validated	p.E203*	1.000	129	0%	75	44%	0	-	-	-	-	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85518260	85518260	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079910.1	+1	validated	p.L1324	0.000	16	0%	20	50%	3	66.6%	-	-	-	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85531657	85531657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079910.1	+1	validated	p.K1413N	1.000	256	0%	49	30.6%	3	0%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
RASSF9	9182	genome.wustl.edu	37	12	86198722	86198722	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005447.3	-1	reviewed	p.E356*	1.000	162	0%	126	46%	14	71.4%	-	-	-	NULL
NTS	4922	genome.wustl.edu	37	12	86276134	86276134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006183.3	+1	reviewed	p.R165I	1.000	100	0%	83	47%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Pro-NT_NN
MGAT4C	25834	genome.wustl.edu	37	12	86373806	86373806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013244.3	-1	validated	p.F233C	1.000	63	0%	31	48.4%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Glyco_transf_54
C12orf29	91298	genome.wustl.edu	37	12	88434028	88434028	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009894.2	+1	validated	p.V65G	1.000	73	0%	49	44.9%	10	80%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
CEP290	80184	genome.wustl.edu	37	12	88457893	88457893	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025114.3	-1	reviewed	e44-1	1.000	105	0%	59	33.9%	0	-	-	-	-	-
CEP290	80184	genome.wustl.edu	37	12	88465107	88465107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025114.3	-1	reviewed	p.R1992I	1.000	215	0%	114	44.7%	6	33.3%	possibly_damaging(0.843)	deleterious(0.03)	deleterious(0.688)	NULL
CEP290	80184	genome.wustl.edu	37	12	88471530	88471530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025114.3	-1	reviewed	p.D1844Y	0.988	130	0%	113	46%	6	33.3%	possibly_damaging(0.91)	deleterious(0.02)	deleterious(0.746)	NULL
CEP290	80184	genome.wustl.edu	37	12	88472897	88472897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025114.3	-1	reviewed	p.I1779T	0.997	194	0%	52	36.5%	10	100%	benign(0.051)	tolerated(0.15)	neutral(0.244)	NULL
CEP290	80184	genome.wustl.edu	37	12	88535021	88535021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025114.3	-1	reviewed	p.E22K	1.000	99	0%	196	52%	4	0%	possibly_damaging(0.608)	deleterious(0.02)	deleterious(0.594)	NULL
TMTC3	160418	genome.wustl.edu	37	12	88588653	88588653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181783.3	+1	reviewed	p.L658I	0.934	54	0%	28	50%	11	54.5%	probably_damaging(0.975)	tolerated(0.13)	deleterious(0.669)	superfamily_Prenyl_trans
KITLG	4254	genome.wustl.edu	37	12	88900904	88900904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000899.3	-1	reviewed	p.K205N	0.000	63	0%	16	43.8%	4	75%	benign(0.014)	tolerated(0.5)	neutral(0.011)	HMMPfam_SCF
POC1B	282809	genome.wustl.edu	37	12	89866048	89866048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172240.1	-1	provisional	p.S153P	1.000	151	0%	86	47.7%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ENSG00000226982	0	genome.wustl.edu	37	12	89894484	89894484	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000413048	+1	known	p.K174N	0.074	98	0%	200	47%	0	-	-	-	-	NULL
GALNT4	8693	genome.wustl.edu	37	12	89917842	89917842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003774.3	-1	reviewed	p.S162Y	0.995	117	0%	147	40.8%	5	40%	possibly_damaging(0.785)	deleterious(0)	deleterious(0.738)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
ATP2B1	490	genome.wustl.edu	37	12	89985069	89985069	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001682.2	-1	reviewed	p.R1119*	1.000	109	0%	32	56.2%	19	42.1%	-	-	-	NULL
ATP2B1	490	genome.wustl.edu	37	12	89997646	89997646	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001682.2	-1	reviewed	p.L897	0.028	178	0%	44	45.5%	10	40%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
EPYC	1833	genome.wustl.edu	37	12	91365750	91365750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004950.4	-1	reviewed	p.N177H	0.998	128	0%	47	44.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
EPYC	1833	genome.wustl.edu	37	12	91396270	91396270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004950.4	-1	reviewed	p.S25P	0.000	154	0%	19	47.4%	1	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
LUM	4060	genome.wustl.edu	37	12	91498044	91498044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002345.3	-1	reviewed	p.K305N	1.000	103	0%	26	26.9%	150	0%	benign(0.248)	tolerated(0.11)	neutral(0.297)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LUM	4060	genome.wustl.edu	37	12	91502421	91502421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002345.3	-1	reviewed	p.F112L	1.000	142	0%	43	51.2%	113	0%	possibly_damaging(0.45)	tolerated(0.62)	neutral(0.151)	HMMSmart_SM00369,superfamily_L domain-like
DCN	1634	genome.wustl.edu	37	12	91550898	91550898	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001920.3	-1	reviewed	p.L202	0.988	157	0%	112	42.9%	101	0%	-	-	-	superfamily_L domain-like
DCN	1634	genome.wustl.edu	37	12	91558423	91558423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001920.3	-1	reviewed	p.E95K	1.000	277	0%	177	42.9%	68	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
EEA1	8411	genome.wustl.edu	37	12	93192792	93192792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003566.3	-1	validated	p.K948T	1.000	152	0%	161	45.3%	5	20%	probably_damaging(0.98)	tolerated(0.45)	neutral(0.436)	NULL
PLXNC1	10154	genome.wustl.edu	37	12	94543393	94543393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005761.1	+1	provisional	p.A216T	0.453	18	0%	16	62.5%	0	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	superfamily_Sema
CCDC41	51134	genome.wustl.edu	37	12	94763806	94763806	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042399.1	-1	validated	p.E314*	1.000	570	0%	175	37.7%	9	22.2%	-	-	-	NULL
FGD6	55785	genome.wustl.edu	37	12	95604128	95604128	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018351.3	-1	validated	p.K311T	0.074	62	0%	62	53.2%	3	33.3%	possibly_damaging(0.513)	deleterious(0)	deleterious(0.617)	NULL
FGD6	55785	genome.wustl.edu	37	12	95604599	95604599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018351.3	-1	validated	p.K154T	0.024	188	0%	232	47.4%	6	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FGD6	55785	genome.wustl.edu	37	12	95604922	95604922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018351.3	-1	validated	p.K46N	1.000	231	0%	147	11.6%	2	0%	possibly_damaging(0.831)	deleterious(0)	deleterious(0.760)	NULL
VEZT	55591	genome.wustl.edu	37	12	95676127	95676127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017599.3	+1	validated	p.F345L	1.000	85	0%	77	50.6%	34	47%	possibly_damaging(0.444)	tolerated(0.16)	neutral(0.204)	NULL
USP44	84101	genome.wustl.edu	37	12	95927919	95927919	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042403.1	-1	validated	p.I38	0.367	177	0%	72	40.3%	0	-	-	-	-	HMMPfam_zf-UBP,HMMSmart_SM00290
CCDC38	120935	genome.wustl.edu	37	12	96260864	96260864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182496.2	-1	validated	p.F561Y	1.000	66	0%	47	40.4%	0	-	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	NULL
ELK3	2004	genome.wustl.edu	37	12	96660949	96660949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005230.2	+1	reviewed	p.Q405H	1.000	181	0%	39	46.2%	4	75%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
C12orf63	374467	genome.wustl.edu	37	12	97147573	97147573	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198520.2	+1	validated	p.S1004	0.001	186	0%	78	38.5%	0	-	-	-	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97151339	97151339	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198520.2	+1	validated	p.K1096N	0.000	132	0%	84	44%	0	-	unknown(0)	deleterious(0)	-	NULL
LOC121456	121456	genome.wustl.edu	37	12	98848888	98848888	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_016411.2	-1	model	NULL	0.996	78	0%	54	51.9%	0	-	-	-	-	-
LOC121456	121456	genome.wustl.edu	37	12	98850287	98850287	+	RNA	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_016411.2	-1	model	NULL	0.923	63	0%	119	45.4%	0	-	-	-	-	-
TMPO	7112	genome.wustl.edu	37	12	98926744	98926744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003276.2	+1	reviewed	p.E237K	1.000	35	0%	44	34.1%	30	40%	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	NULL
TMPO	7112	genome.wustl.edu	37	12	98927398	98927398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003276.2	+1	reviewed	p.E455K	0.046	139	0%	120	34.2%	45	51.1%	benign(0.042)	deleterious(0.04)	neutral(0.351)	NULL
SLC25A3	5250	genome.wustl.edu	37	12	98987752	98987752	+	Splice_Site	SNP	G	G	T	rs111736750	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005888.3	+1	reviewed	e1-1	0.941	19	0%	10	40%	43	86%	-	-	-	-
IKBIP	121457	genome.wustl.edu	37	12	99007970	99007970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201612.1	-1	provisional	p.T149M	0.001	70	0%	147	38.8%	7	42.8%	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
IKBIP	121457	genome.wustl.edu	37	12	99020498	99020498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153687.2	-1	provisional	p.S115Y	1.000	58	0%	130	35.4%	5	60%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100451456	100451456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015054.1	-1	validated	p.R1106I	1.000	283	0%	134	51.5%	8	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SCYL2	55681	genome.wustl.edu	37	12	100717379	100717379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017988.4	+1	provisional	p.R491I	1.000	119	0%	149	43%	22	27.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_ARM repeat
SLC17A8	246213	genome.wustl.edu	37	12	100813706	100813706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139319.2	+1	reviewed	p.E513D	1.000	98	0%	37	48.6%	0	-	possibly_damaging(0.45)	deleterious(0.01)	deleterious(0.553)	superfamily_MFS general substrate transporter
NR1H4	9971	genome.wustl.edu	37	12	100904867	100904867	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005123.2	+1	provisional	p.G131*	1.000	76	0%	39	48.7%	0	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
GAS2L3	283431	genome.wustl.edu	37	12	101016159	101016159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174942.1	+1	provisional	p.R252I	1.000	197	0%	55	34.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GAS2,HMMSmart_SM00243
GAS2L3	283431	genome.wustl.edu	37	12	101017933	101017933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174942.1	+1	provisional	p.Q450H	0.072	157	0%	36	52.8%	4	75%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
ANO4	121601	genome.wustl.edu	37	12	101413866	101413866	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178826.3	+1	validated	p.I228	0.943	145	0%	54	55.6%	0	-	-	-	-	NULL
ANO4	121601	genome.wustl.edu	37	12	101504184	101504184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178826.3	+1	validated	p.L683I	1.000	276	0%	82	50%	0	-	benign(0.045)	tolerated(1)	neutral(0.003)	HMMPfam_DUF590
SLC5A8	160728	genome.wustl.edu	37	12	101581248	101581248	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145913.3	-1	validated	p.C293	0.996	163	0%	32	31.2%	0	-	-	-	-	NULL
UTP20	27340	genome.wustl.edu	37	12	101696297	101696297	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014503.2	+1	validated	p.L583V	0.998	223	0%	316	44.6%	2	50%	possibly_damaging(0.706)	tolerated(0.17)	neutral(0.313)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101727194	101727194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014503.2	+1	validated	p.A1178V	1.000	172	0%	120	46.7%	4	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101740305	101740305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014503.2	+1	validated	p.S1608Y	1.000	128	0%	79	40.5%	4	0%	benign(0.335)	deleterious(0)	deleterious(0.550)	superfamily_ARM repeat
MYBPC1	4604	genome.wustl.edu	37	12	102043085	102043085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002465.2	+1	validated	p.R415Q	0.000	154	0%	99	45.5%	0	-	benign(0.1)	deleterious(0.02)	neutral(0.391)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GNPTAB	79158	genome.wustl.edu	37	12	102158935	102158935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024312.4	-1	reviewed	p.R587Q	1.000	508	0.2%	248	44.4%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC53	51019	genome.wustl.edu	37	12	102406899	102406899	+	Missense_Mutation	SNP	G	G	T	rs1801519	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016053.2	-1	validated	p.S191Y	1.000	109	0%	78	44.9%	29	31%	unknown(0)	tolerated(0.07)	-	NULL
PARPBP	55010	genome.wustl.edu	37	12	102589201	102589201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017915.2	+1	predicted	p.L378I	0.743	321	0%	69	31.9%	7	28.5%	probably_damaging(0.964)	tolerated(0.33)	neutral(0.430)	NULL
PMCH	5367	genome.wustl.edu	37	12	102590877	102590877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002674.2	-1	validated	p.L108V	0.986	357	0%	80	12.5%	14	14.2%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	HMMPfam_Pro-MCH
IGF1	3479	genome.wustl.edu	37	12	102869474	102869474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001111285.1	-1	reviewed	p.A56D	1.000	87	0%	19	63.2%	25	32%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Insulin,HMMSmart_SM00078,superfamily_Insulin-like
C12orf42	374470	genome.wustl.edu	37	12	103699876	103699876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099336.1	-1	validated	p.Q169H	0.000	154	0%	49	44.9%	0	-	possibly_damaging(0.677)	deleterious(0.05)	deleterious(0.587)	NULL
STAB2	55576	genome.wustl.edu	37	12	104123926	104123926	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017564.9	+1	reviewed	p.I1705	0.380	275	0%	109	37.6%	0	-	-	-	-	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
STAB2	55576	genome.wustl.edu	37	12	104149229	104149229	+	Missense_Mutation	SNP	C	C	A	rs34342881	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017564.9	+1	reviewed	p.F2288L	1.000	93	0%	45	37.8%	0	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	HMMPfam_Xlink,HMMSmart_LINK,superfamily_BIgH3_FAS1,superfamily_C-type_lectin_fold
TDG	6996	genome.wustl.edu	37	12	104376985	104376985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003211.4	+1	reviewed	p.F229S	1.000	111	0%	115	40%	21	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDG,superfamily_UDNA_glycsylseSF
HCFC2	29915	genome.wustl.edu	37	12	104474537	104474537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013320.2	+1	reviewed	p.W232C	1.000	115	0%	140	40%	5	80%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2
TXNRD1	7296	genome.wustl.edu	37	12	104713269	104713269	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000429002	+1	known	p.E303*	1.000	41	0%	67	35.8%	29	6.8%	-	-	-	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
CHST11	50515	genome.wustl.edu	37	12	104995756	104995756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018413.5	+1	validated	p.Y64C	1.000	85	1.2%	70	31.4%	3	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Sulfotransfer_2
CHST11	50515	genome.wustl.edu	37	12	105151233	105151233	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018413.5	+1	validated	p.F237	1.000	287	0%	82	48.8%	7	14.2%	-	-	-	HMMPfam_Sulfotransfer_2
NUAK1	9891	genome.wustl.edu	37	12	106466581	106466581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014840.2	-1	validated	p.K207T	1.000	101	0%	56	44.6%	4	0%	benign(0.153)	tolerated(0.23)	neutral(0.055)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NUAK1	9891	genome.wustl.edu	37	12	106480645	106480645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014840.2	-1	validated	p.K127T	1.000	234	0%	48	39.6%	1	100%	possibly_damaging(0.95)	tolerated(0.14)	deleterious(0.643)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TCP11L2	255394	genome.wustl.edu	37	12	106740184	106740184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152772.1	+1	provisional	p.Q479R	0.977	185	0%	71	43.7%	8	50%	benign(0.015)	tolerated(0.28)	neutral(0.032)	HMMPfam_Tcp11
RIC8B	55188	genome.wustl.edu	37	12	107245259	107245259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018157.2	+1	validated	p.R398Q	1.000	418	0%	64	50%	11	36.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold,HMMPfam_Ric8
CRY1	1407	genome.wustl.edu	37	12	107398927	107398927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004075.3	-1	validated	p.E123*	1.000	167	0%	145	36.6%	16	50%	-	-	-	HMMPfam_DNA_photolyase,superfamily_Cryptochrome/photolyase N-terminal domain
BTBD11	121551	genome.wustl.edu	37	12	108008924	108008924	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001018072.1	+1	validated	p.H662	1.000	396	0%	218	47.2%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
WSCD2	9671	genome.wustl.edu	37	12	108626562	108626562	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014653.2	+1	validated	p.A345G	1.000	132	0%	22	59.1%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_P-loop containing nucleoside triphosphate hydrolases
WSCD2	9671	genome.wustl.edu	37	12	108634200	108634200	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014653.2	+1	validated	p.I408	0.998	52	0%	11	36.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SART3	9733	genome.wustl.edu	37	12	108924988	108924988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014706.3	-1	reviewed	p.R580I	1.000	239	0%	212	43.4%	35	14.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SART3	9733	genome.wustl.edu	37	12	108929246	108929246	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014706.3	-1	reviewed	e12-2	0.999	137	0%	41	31.7%	3	66.6%	-	-	-	-
SELPLG	6404	genome.wustl.edu	37	12	109018080	109018080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003006.3	-1	reviewed	p.P2S	0.941	134	0%	53	47.2%	3	0%	unknown(0)	tolerated(1)	-	NULL
SSH1	54434	genome.wustl.edu	37	12	109192846	109192846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018984.3	-1	validated	p.R427C	1.000	83	0%	34	35.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
ACACB	32	genome.wustl.edu	37	12	109613968	109613968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001093.3	+1	reviewed	p.R446I	0.900	294	0%	110	34.5%	2	0%	possibly_damaging(0.667)	tolerated(0.09)	deleterious(0.532)	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
UBE3B	89910	genome.wustl.edu	37	12	109940977	109940977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130466.2	+1	reviewed	p.R478W	1.000	141	0%	89	43.8%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109945451	109945451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130466.2	+1	reviewed	p.F511L	0.990	241	0%	104	50%	6	50%	possibly_damaging(0.601)	deleterious(0.02)	deleterious(0.591)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109947484	109947484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130466.2	+1	reviewed	p.S569Y	1.000	468	0%	450	44.4%	7	42.8%	benign(0.135)	tolerated(0.08)	neutral(0.311)	NULL
C12orf34	84915	genome.wustl.edu	37	12	110181994	110182002	+	In_Frame_Del	DEL	CACCTGGCC	CACCTGGCC	-	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	CACCTGGCC	CACCTGGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032829.2	+1	validated	p.HLA15in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TRPV4	59341	genome.wustl.edu	37	12	110226369	110226369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021625.4	-1	reviewed	p.D682N	1.000	110	0%	68	44.1%	2	50%	probably_damaging(0.979)	tolerated(0.05)	deleterious(0.767)	HMMPfam_Ion_trans
IFT81	28981	genome.wustl.edu	37	12	110584776	110584776	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143779.1	+1	validated	p.E322*	0.932	75	0%	83	44.6%	10	0%	-	-	-	NULL
IFT81	28981	genome.wustl.edu	37	12	110618250	110618250	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143779.1	+1	validated	p.L404	1.000	93	0%	114	46.5%	13	69.2%	-	-	-	NULL
HVCN1	84329	genome.wustl.edu	37	12	111087247	111087247	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040107.1	-1	validated	p.R264*	0.894	182	0%	95	48.4%	3	0%	-	-	-	NULL
CCDC63	160762	genome.wustl.edu	37	12	111291336	111291336	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152591.1	+1	provisional	p.K46T	0.921	131	0%	144	33.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
CUX2	23316	genome.wustl.edu	37	12	111786100	111786100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015267.3	+1	validated	p.R1478W	1.000	8	0.000	18	0.500	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATXN2	6311	genome.wustl.edu	37	12	111963089	111963089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002973.3	-1	reviewed	p.K361N	1.000	163	0%	110	50.9%	8	50%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	NULL
BRAP	8315	genome.wustl.edu	37	12	112103473	112103473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006768.3	-1	reviewed	p.S289I	1.000	115	0%	38	31.6%	38	50%	benign(0.009)	tolerated(0.11)	neutral(0.272)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
ACAD10	80724	genome.wustl.edu	37	12	112147450	112147450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136538.1	+1	reviewed	p.L218I	0.898	51	0%	61	50.8%	6	16.6%	benign(0.047)	deleterious(0.01)	neutral(0.409)	HMMPfam_Hydrolase,superfamily_HAD-like
NAA25	80018	genome.wustl.edu	37	12	112485506	112485506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024953.3	-1	reviewed	p.D657Y	1.000	306	0%	369	44.4%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NatB_MDM20
NAA25	80018	genome.wustl.edu	37	12	112492280	112492280	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024953.3	-1	reviewed	p.R514*	1.000	117	0%	61	37.7%	6	16.6%	-	-	-	HMMPfam_NatB_MDM20,superfamily_TPR-like
NAA25	80018	genome.wustl.edu	37	12	112498133	112498133	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024953.3	-1	reviewed	p.F463C	1.000	145	0%	135	13.3%	5	0%	benign(0.377)	tolerated(0.13)	neutral(0.373)	HMMPfam_NatB_MDM20,superfamily_TPR-like
NAA25	80018	genome.wustl.edu	37	12	112499139	112499139	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024953.3	-1	reviewed	p.K401	0.151	196	0%	81	45.7%	6	66.6%	-	-	-	HMMPfam_NatB_MDM20,superfamily_TPR-like
C12orf51	283450	genome.wustl.edu	37	12	112600232	112600232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001109662.2	-1	validated	p.R3984C	1.000	89	0%	45	42.2%	26	57.6%	probably_damaging(0.999)	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MIR1302-1	100302227	genome.wustl.edu	37	12	113132861	113132861	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000408633	-1	known	NULL	0.931	101	0%	87	55.2%	0	-	-	-	-	-
OAS3	4940	genome.wustl.edu	37	12	113384669	113384669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006187.2	+1	reviewed	p.R253Q	0.735	229	0%	70	54.3%	3	33.3%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
OAS2	4939	genome.wustl.edu	37	12	113445509	113445509	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016817.2	+1	reviewed	e9-1	0.955	61	0%	33	39.4%	0	-	-	-	-	-
C12orf52	84934	genome.wustl.edu	37	12	113629184	113629184	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032848.1	+1	predicted	p.F124	0.128	36	2.8%	18	22.2%	60	43.3%	-	-	-	NULL
SDSL	113675	genome.wustl.edu	37	12	113874658	113874658	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138432.2	+1	provisional	p.V258	0.648	136	0%	21	66.7%	19	47.3%	-	-	-	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
TBX5	6910	genome.wustl.edu	37	12	114837335	114837335	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000192.3	-1	reviewed	p.K115N	0.998	274	0%	168	39.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors
TBX5	6910	genome.wustl.edu	37	12	114841626	114841626	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000192.3	-1	reviewed	p.S26	0.000	61	0%	16	25%	0	-	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116422129	116422129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015335.3	-1	validated	p.G1463R	0.998	213	0.5%	23	56.5%	18	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAP_240kDa
MED13L	23389	genome.wustl.edu	37	12	116446725	116446725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015335.3	-1	validated	p.C498F	1.000	577	0.2%	208	36.1%	6	50%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	NULL
NOS1	4842	genome.wustl.edu	37	12	117698288	117698288	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000620.2	-1	reviewed	p.K783	0.997	257	0%	59	39%	0	-	-	-	-	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
KSR2	283455	genome.wustl.edu	37	12	117908997	117908997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173598.4	-1	validated	p.S875L	1.000	757	0%	194	37.6%	0	-	benign(0.091)	deleterious(0.05)	neutral(0.352)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KSR2	283455	genome.wustl.edu	37	12	117968754	117968754	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173598.4	-1	validated	p.S569	0.104	127	0%	62	41.9%	0	-	-	-	-	NULL
WSB2	55884	genome.wustl.edu	37	12	118476094	118476094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018639.3	-1	reviewed	p.S220L	1.000	51	0%	23	39.1%	118	37.2%	possibly_damaging(0.915)	deleterious(0.03)	deleterious(0.731)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SUDS3	64426	genome.wustl.edu	37	12	118828980	118828980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022491.2	+1	validated	p.K137T	1.000	111	0%	160	36.9%	39	61.5%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_Sds3
SUDS3	64426	genome.wustl.edu	37	12	118829057	118829057	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022491.2	+1	validated	p.N163H	1.000	66	0%	128	39.1%	44	61.3%	benign(0.011)	tolerated(0.12)	neutral(0.261)	HMMPfam_Sds3
SRRM4	84530	genome.wustl.edu	37	12	119419721	119419721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194286.2	+1	validated	p.F12L	1.000	69	0%	19	21.1%	0	-	unknown(0)	deleterious(0)	-	NULL
CIT	11113	genome.wustl.edu	37	12	120151011	120151011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007174.1	-1	validated	p.E1484*	1.000	297	0.3%	195	42.6%	4	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SIRT4	23409	genome.wustl.edu	37	12	120750799	120750799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012240.1	+1	reviewed	p.S302Y	0.938	272	0%	133	42.1%	2	100%	benign(0.001)	deleterious(0)	neutral(0.445)	superfamily_SSF52467
CABP1	9478	genome.wustl.edu	37	12	121098115	121098115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033677.1	+1	reviewed	p.E268K	1.000	105	0%	51	43.1%	4	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_EF-hand
P2RX7	5027	genome.wustl.edu	37	12	121570884	121570884	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002562.4	+1	reviewed	p.I37	0.983	177	0%	99	49.5%	0	-	-	-	-	HMMPfam_P2X_receptor
ANAPC5	51433	genome.wustl.edu	37	12	121769176	121769176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016237.4	-1	reviewed	p.D336N	1.000	72	0%	26	42.3%	168	41%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_TPR-like
ANAPC5	51433	genome.wustl.edu	37	12	121775128	121775128	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016237.4	-1	reviewed	p.N242T	1.000	83	0%	102	39.2%	120	47.5%	probably_damaging(0.979)	tolerated(0.08)	deleterious(0.722)	superfamily_TPR-like
KDM2B	84678	genome.wustl.edu	37	12	121986793	121986793	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032590.4	-1	reviewed	p.P224	0.521	221	0.5%	161	50.9%	12	75%	-	-	-	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
WDR66	144406	genome.wustl.edu	37	12	122361615	122361615	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144668.4	+1	validated	p.I156F	0.000	230	0%	178	48.9%	4	50%	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_WD40 repeat-like
WDR66	144406	genome.wustl.edu	37	12	122361875	122361875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144668.4	+1	validated	p.K242N	0.000	111	0%	73	43.8%	8	87.5%	benign(0.008)	tolerated(0.29)	neutral(0.029)	superfamily_WD40 repeat-like
WDR66	144406	genome.wustl.edu	37	12	122396368	122396368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144668.4	+1	validated	p.L641I	0.044	155	0%	121	46.3%	7	57.1%	benign(0.176)	tolerated(0.4)	neutral(0.032)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MLXIP	22877	genome.wustl.edu	37	12	122622980	122622980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000319080	+1	known	p.A756T	1.000	45	0%	24	37.5%	32	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
IL31	386653	genome.wustl.edu	37	12	122657113	122657113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014336.1	-1	validated	p.L114R	0.001	271	0%	298	50.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123026668	123026668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014708.4	+1	reviewed	p.Q173K	0.998	38	0%	171	45.6%	1	0%	unknown(0)	tolerated(0.26)	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123055607	123055607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014708.4	+1	reviewed	p.E651D	0.997	123	0%	164	45.7%	1	100%	unknown(0)	tolerated(0.29)	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123071257	123071257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014708.4	+1	reviewed	p.R1228I	0.361	151	0%	266	42.5%	13	38.4%	benign(0.271)	tolerated(0.27)	neutral(0.062)	NULL
HCAR1	27198	genome.wustl.edu	37	12	123214363	123214363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032554.3	-1	validated	p.G175V	1.000	82	0%	29	41.4%	0	-	possibly_damaging(0.61)	tolerated(0.19)	neutral(0.261)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000250840	0	genome.wustl.edu	37	12	123214953	123214953	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000502465	+1	novel	NULL	0.000	12	0%	15	33.3%	0	-	-	-	-	-
PITPNM2	57605	genome.wustl.edu	37	12	123489836	123489836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020845.2	-1	validated	p.K301N	1.000	29	0%	34	38.2%	2	0%	benign(0.177)	tolerated(0.47)	neutral(0.028)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123798259	123798259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018183.3	-1	validated	p.R1042I	1.000	103	0%	118	48.3%	14	71.4%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123832584	123832584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018183.3	-1	validated	p.N77H	1.000	116	0%	174	40.8%	9	33.3%	benign(0.267)	tolerated(0.05)	neutral(0.373)	NULL
TMED2	10959	genome.wustl.edu	37	12	124071336	124071336	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006815.3	+1	validated	p.E75*	1.000	83	0%	105	41%	254	26.3%	-	-	-	HMMPfam_EMP24_GP25L,superfamily_Supernatant protein factor (SPF) C-terminal domain
DDX55	57696	genome.wustl.edu	37	12	124104003	124104003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020936.1	+1	reviewed	p.R453Q	1.000	151	0%	114	43%	31	32.2%	benign(0.005)	tolerated(0.35)	neutral(0.021)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124265760	124265760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207437.3	+1	validated	p.H191R	0.999	166	0%	71	57.7%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124289552	124289552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207437.3	+1	validated	p.K866N	0.000	164	0.6%	91	44%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124311396	124311396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207437.3	+1	validated	p.D1330Y	1.000	201	0%	104	47.1%	0	-	possibly_damaging(0.822)	deleterious(0.02)	deleterious(0.694)	HMMPfam_DHC_N2
DNAH10	196385	genome.wustl.edu	37	12	124332585	124332585	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207437.3	+1	validated	p.A1846	1.000	111	0%	29	41.4%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124366226	124366226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207437.3	+1	validated	p.D2779N	1.000	74	0%	27	55.6%	0	-	benign(0.104)	tolerated(0.09)	neutral(0.304)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124395196	124395196	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207437.3	+1	validated	p.E3253*	0.976	19	0%	102	34.3%	1	0%	-	-	-	NULL
CCDC92	80212	genome.wustl.edu	37	12	124427302	124427302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025140.1	-1	provisional	p.S71L	0.962	118	0%	208	50.5%	49	46.9%	benign(0.167)	tolerated(0.41)	neutral(0.030)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124816903	124816903	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006312.3	-1	validated	p.K2296T	1.000	90	0%	204	47.5%	148	49.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124827614	124827614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006312.3	-1	validated	p.R1632C	0.998	10	0%	16	31.2%	89	49.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124848279	124848279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006312.3	-1	validated	p.Q958H	1.000	5	0.000	13	0.615	34	55.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TMEM132B	114795	genome.wustl.edu	37	12	125834065	125834065	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052907.2	+1	provisional	p.T40	0.000	168	0%	77	53.2%	0	-	-	-	-	NULL
TMEM132B	114795	genome.wustl.edu	37	12	125834181	125834181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052907.2	+1	provisional	p.R79M	0.141	160	0%	104	34.6%	0	-	benign(0.075)	deleterious(0.01)	neutral(0.411)	NULL
LOC121296	121296	genome.wustl.edu	37	12	127349580	127349580	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343223.1	+1	model	p.C53	0.995	53	0%	16	31.2%	0	-	-	-	-	NULL
LOC121296	121296	genome.wustl.edu	37	12	127349618	127349618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343223.1	+1	model	p.A66V	0.948	68	0%	24	50%	0	-	-	-	-	NULL
LOC121296	121296	genome.wustl.edu	37	12	127349870	127349870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343223.1	+1	model	p.S150Y	0.985	39	0%	37	43.2%	0	-	-	-	-	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130832683	130832683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004764.3	+1	reviewed	p.R230Q	1.000	166	0%	168	39.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PAZ domain
PIWIL1	9271	genome.wustl.edu	37	12	130841499	130841499	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004764.3	+1	reviewed	p.E481*	1.000	180	0%	107	47.7%	0	-	-	-	-	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130842043	130842043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004764.3	+1	reviewed	p.R537I	0.985	234	0%	87	24.1%	0	-	possibly_damaging(0.903)	deleterious(0.05)	deleterious(0.704)	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130929802	130929802	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015347.4	-1	validated	p.F181	0.953	118	0.8%	107	44.9%	0	-	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
GPR133	283383	genome.wustl.edu	37	12	131484927	131484927	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198827.3	+1	validated	e9-1	0.958	117	0%	214	12.6%	0	-	-	-	-	-
ULK1	8408	genome.wustl.edu	37	12	132393456	132393456	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003565.2	+1	validated	p.F168	0.813	7	0.000	13	0.308	31	35.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ULK1	8408	genome.wustl.edu	37	12	132395279	132395279	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003565.2	+1	validated	p.S294	0.243	9	0.000	25	0.280	24	12.5%	-	-	-	superfamily_Protein kinase-like (PK-like)
EP400	57634	genome.wustl.edu	37	12	132472429	132472429	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015409.3	+1	validated	p.A800	0.534	84	0%	85	34.1%	11	36.3%	-	-	-	HMMPfam_HSA,HMMSmart_HSA
EP400	57634	genome.wustl.edu	37	12	132529956	132529956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015409.3	+1	validated	p.R2292C	0.997	72	0%	53	39.6%	30	36.6%	unknown(0)	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006231.2	-1	validated	p.P286R	1.000	63	0%	96	43.8%	23	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ZNF10	7556	genome.wustl.edu	37	12	133733540	133733540	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015394.4	+1	reviewed	p.E570*	0.028	49	0%	38	39.5%	6	66.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133779243	133779243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003415.2	+1	validated	p.R324I	0.631	58	0%	33	48.5%	5	60%	probably_damaging(0.969)	tolerated(0.18)	neutral(0.467)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133779327	133779327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003415.2	+1	validated	p.R352K	0.852	49	0%	28	46.4%	13	30.7%	benign(0.006)	tolerated(0.42)	neutral(0.014)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133780755	133780755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003415.2	+1	validated	p.R828Q	0.724	122	0%	73	52.1%	19	42.1%	probably_damaging(0.957)	tolerated(0.61)	neutral(0.405)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133780902	133780902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003415.2	+1	validated	p.S877Y	0.000	128	0%	66	15.2%	25	8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TPTE2	93492	genome.wustl.edu	37	13	20006719	20006719	+	Splice_Site	SNP	C	C	A	rs75793549		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199254.2	-1	validated	e16-1	1.000	98	0%	55	40%	0	-	-	-	-	-
TPTE2	93492	genome.wustl.edu	37	13	20012252	20012252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199254.2	-1	validated	p.E339K	0.001	123	0%	46	52.2%	0	-	benign(0.096)	tolerated(0.3)	neutral(0.036)	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE2	93492	genome.wustl.edu	37	13	20025322	20025322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199254.2	-1	validated	p.R262Q	0.937	320	0%	111	44.1%	0	-	benign(0.075)	tolerated(0.14)	neutral(0.255)	superfamily_(Phosphotyrosine protein) phosphatases II
MPHOSPH8	54737	genome.wustl.edu	37	13	20221272	20221272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017520.3	+1	validated	p.F353L	0.001	76	0%	80	47.5%	43	37.2%	benign(0.009)	tolerated(0.08)	neutral(0.300)	NULL
ZMYM5	9205	genome.wustl.edu	37	13	20398930	20398930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142684.1	-1	validated	p.R566L	1.000	40	0%	108	44.4%	2	0%	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20567402	20567402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003453.2	+1	validated	p.E64K	1.000	201	0%	137	43.1%	21	38%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
GJB6	10804	genome.wustl.edu	37	13	20797027	20797027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001110219.2	-1	reviewed	p.A198V	0.987	331	0%	170	52.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Connexin_CCC
IFT88	8100	genome.wustl.edu	37	13	21165123	21165123	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175605.3	+1	reviewed	p.A85	0.998	78	0%	133	42.9%	8	25%	-	-	-	NULL
IFT88	8100	genome.wustl.edu	37	13	21219088	21219088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175605.3	+1	reviewed	p.S656Y	1.000	196	0%	112	39.3%	15	13.3%	possibly_damaging(0.772)	deleterious(0.03)	deleterious(0.651)	HMMSmart_SM00028,superfamily_TPR-like
IFT88	8100	genome.wustl.edu	37	13	21237654	21237654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175605.3	+1	reviewed	p.R705C	1.000	290	0%	226	38.9%	17	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XPO4	64328	genome.wustl.edu	37	13	21383303	21383303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022459.4	-1	validated	p.R471Q	1.000	103	0%	48	33.3%	6	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM-type_fold
LATS2	26524	genome.wustl.edu	37	13	21565499	21565499	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014572.2	-1	reviewed	p.I129	0.499	44	0%	27	51.9%	7	0%	-	-	-	HMMPfam_UBA
SKA3	221150	genome.wustl.edu	37	13	21746626	21746626	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000314759	-1	known	p.L61	0.956	47	0%	175	42.3%	15	53.3%	-	-	-	NULL
SGCG	6445	genome.wustl.edu	37	13	23853608	23853608	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000231.2	+1	reviewed	p.R166*	1.000	194	0%	91	44%	0	-	-	-	-	HMMPfam_Sarcoglycan_1
SACS	26278	genome.wustl.edu	37	13	23905732	23905732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014363.4	-1	reviewed	p.D4095Y	1.000	95	0%	65	41.5%	1	0%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
SACS	26278	genome.wustl.edu	37	13	23907076	23907076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014363.4	-1	reviewed	p.E3647*	1.000	41	0%	48	45.8%	3	66.6%	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23910435	23910435	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014363.4	-1	reviewed	p.K2527T	0.998	151	0%	57	49.1%	2	0%	benign(0.005)	tolerated(0.18)	neutral(0.056)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SACS	26278	genome.wustl.edu	37	13	23912385	23912385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014363.4	-1	reviewed	p.R1877Q	0.998	131	0%	113	40.7%	3	66.6%	probably_damaging(0.996)	tolerated(0.38)	deleterious(0.479)	NULL
SACS	26278	genome.wustl.edu	37	13	23912488	23912488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014363.4	-1	reviewed	p.L1843M	0.998	134	0%	83	36.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SACS	26278	genome.wustl.edu	37	13	23914067	23914067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014363.4	-1	reviewed	p.Q1316H	0.997	74	0%	106	47.2%	1	0%	benign(0.013)	deleterious(0.04)	neutral(0.349)	NULL
ATP12A	479	genome.wustl.edu	37	13	25259501	25259501	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001676.5	+1	reviewed	p.D73A	0.913	159	0%	153	44.4%	0	-	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
ATP12A	479	genome.wustl.edu	37	13	25276149	25276149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001676.5	+1	reviewed	p.S653I	0.997	307	0.3%	166	47%	0	-	possibly_damaging(0.85)	deleterious(0.01)	deleterious(0.733)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP12A	479	genome.wustl.edu	37	13	25280520	25280520	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001676.5	+1	reviewed	p.I696	0.985	151	0%	49	53.1%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
CENPJ	55835	genome.wustl.edu	37	13	25486761	25486761	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018451.3	-1	reviewed	p.E135*	0.999	274	0%	223	43.9%	5	20%	-	-	-	NULL
PABPC3	5042	genome.wustl.edu	37	13	25670868	25670868	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030979.2	+1	validated	p.E178*	1.000	283	0.4%	292	51.4%	2	0%	-	-	-	superfamily_RNA-binding domain RBD
FAM123A	219287	genome.wustl.edu	37	13	25744518	25744518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152704.2	-1	validated	p.G414S	0.354	27	0%	25	32%	0	-	benign(0)	tolerated(1)	-	HMMPfam_WTX
ATP8A2	51761	genome.wustl.edu	37	13	26151236	26151236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016529.4	+1	validated	p.R581Q	1.000	306	0%	85	45.9%	0	-	possibly_damaging(0.902)	deleterious(0.05)	deleterious(0.702)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP8A2	51761	genome.wustl.edu	37	13	26152972	26152972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016529.4	+1	validated	p.R601I	1.000	457	0%	128	18.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
RNF6	6049	genome.wustl.edu	37	13	26789544	26789544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005977.3	-1	reviewed	p.N159H	0.846	292	0%	130	44.6%	13	23%	probably_damaging(0.975)	tolerated(0.14)	deleterious(0.666)	NULL
GPR12	2835	genome.wustl.edu	37	13	27333908	27333908	+	Silent	SNP	G	G	A	rs145483394	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005288.3	-1	validated	p.A19	0.480	24	0%	24	50%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
MTIF3	219402	genome.wustl.edu	37	13	28011398	28011398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152912.4	-1	reviewed	p.R158I	0.005	343	0%	231	42%	69	33.3%	benign(0.006)	tolerated(0.38)	neutral(0.018)	superfamily_Translation initiation factor IF3 C-terminal domain
MTIF3	219402	genome.wustl.edu	37	13	28014281	28014281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152912.4	-1	reviewed	p.R102Q	1.000	350	0%	151	39.1%	67	50.7%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_IF3_N,superfamily_Translation initiation factor IF3 N-terminal domain
LNX2	222484	genome.wustl.edu	37	13	28136675	28136675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153371.3	-1	validated	p.L367I	1.000	77	0%	50	40%	12	33.3%	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
LNX2	222484	genome.wustl.edu	37	13	28155572	28155572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153371.3	-1	validated	p.R90I	1.000	117	0%	80	43.8%	8	25%	benign(0.177)	tolerated(0.07)	neutral(0.336)	superfamily_SSF57850
FLT1	2321	genome.wustl.edu	37	13	28931805	28931805	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002019.4	-1	reviewed	p.G712*	1.000	285	0%	109	38.5%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
FLT1	2321	genome.wustl.edu	37	13	29001422	29001422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002019.4	-1	reviewed	p.S437L	0.163	153	0%	39	17.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
FLT1	2321	genome.wustl.edu	37	13	29041233	29041233	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002019.4	-1	reviewed	p.E65	0.001	276	0%	130	43.8%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SLC46A3	283537	genome.wustl.edu	37	13	29287093	29287093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135919.1	-1	validated	p.L262V	0.832	55	0%	94	47.9%	3	0%	possibly_damaging(0.541)	tolerated(0.12)	neutral(0.444)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC46A3	283537	genome.wustl.edu	37	13	29287276	29287276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135919.1	-1	validated	p.L201I	0.347	29	0%	56	42.9%	0	-	benign(0.011)	tolerated(0.32)	neutral(0.025)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC7A1	6541	genome.wustl.edu	37	13	30107106	30107106	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003045.4	-1	validated	p.V128	0.576	83	0%	44	11.4%	25	20%	-	-	-	NULL
C13orf33	84935	genome.wustl.edu	37	13	31491570	31491570	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032849.3	+1	validated	p.Y103*	1.000	166	0%	182	11.5%	1	0%	-	-	-	NULL
HSPH1	10808	genome.wustl.edu	37	13	31713232	31713232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006644.2	-1	validated	p.F665V	0.952	158	0%	40	40%	185	50.8%	benign(0.078)	tolerated(0.09)	neutral(0.302)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
B3GALTL	145173	genome.wustl.edu	37	13	31835151	31835151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194318.3	+1	reviewed	p.E176D	1.000	223	0%	162	40.7%	4	75%	benign(0.184)	tolerated(0.21)	neutral(0.061)	NULL
RXFP2	122042	genome.wustl.edu	37	13	32371363	32371363	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130806.3	+1	reviewed	p.I604	1.000	381	0.5%	215	47.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FRY	10129	genome.wustl.edu	37	13	32676143	32676143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023037.2	+1	validated	p.Q105R	0.938	93	0%	88	12.5%	0	-	possibly_damaging(0.727)	tolerated(0.08)	deleterious(0.565)	NULL
FRY	10129	genome.wustl.edu	37	13	32709303	32709303	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023037.2	+1	validated	p.R354*	0.995	93	0%	74	37.8%	0	-	-	-	-	NULL
FRY	10129	genome.wustl.edu	37	13	32753060	32753060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023037.2	+1	validated	p.L921I	1.000	174	0%	64	35.9%	0	-	possibly_damaging(0.5)	tolerated(0.09)	neutral(0.464)	NULL
BRCA2	675	genome.wustl.edu	37	13	32912007	32912007	+	Missense_Mutation	SNP	C	C	T	rs80358600	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000059.3	+1	reviewed	p.S1172L	0.006	63	0%	43	44.2%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
BRCA2	675	genome.wustl.edu	37	13	32913531	32913531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000059.3	+1	reviewed	p.S1680Y	0.995	38	0%	43	34.9%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_BRCA2
BRCA2	675	genome.wustl.edu	37	13	32972836	32972836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000059.3	+1	reviewed	p.S3396R	0.000	68	0%	39	33.3%	6	50%	possibly_damaging(0.472)	deleterious(0.02)	deleterious(0.539)	NULL
N4BP2L1	90634	genome.wustl.edu	37	13	32981433	32981433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052818.2	-1	validated	p.D117G	1.000	199	0%	167	49.7%	5	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_P-loop containing nucleoside triphosphate hydrolases
N4BP2L2	10443	genome.wustl.edu	37	13	33017924	33017924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033111.3	-1	validated	p.K250N	0.000	165	0%	222	44.1%	3	33.3%	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33334792	33334792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015032.3	+1	reviewed	p.R1151L	1.000	164	0%	27	70.4%	18	44.4%	possibly_damaging(0.938)	tolerated(0.16)	neutral(0.443)	NULL
STARD13	90627	genome.wustl.edu	37	13	33685035	33685035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178006.3	-1	validated	p.E873K	1.000	148	0%	56	39.3%	4	25%	benign(0.017)	tolerated(0.06)	neutral(0.323)	superfamily_GTPase activation domain GAP
STARD13	90627	genome.wustl.edu	37	13	33704414	33704414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178006.3	-1	validated	p.D134N	1.000	91	0%	22	50%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NBEA	26960	genome.wustl.edu	37	13	35644866	35644866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	p.A483V	1.000	143	0%	29	55.2%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35751132	35751132	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	e28-1	1.000	214	0%	45	44.4%	0	-	-	-	-	-
NBEA	26960	genome.wustl.edu	37	13	35751185	35751185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	p.R1536I	0.999	395	0%	61	36.1%	0	-	possibly_damaging(0.61)	tolerated(0.09)	deleterious(0.508)	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36006456	36006456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	p.R2077Q	1.000	238	0%	99	46.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1088,superfamily_ARM repeat
MAB21L1	4081	genome.wustl.edu	37	13	36049217	36049217	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005584.4	-1	reviewed	p.P353	0.993	95	0%	64	56.2%	0	-	-	-	-	HMMPfam_Mab-21
MAB21L1	4081	genome.wustl.edu	37	13	36049333	36049333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005584.4	-1	reviewed	p.R315W	1.000	94	0%	45	53.3%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_Mab-21
NBEA	26960	genome.wustl.edu	37	13	36124666	36124666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	p.R2213Q	1.000	169	0.6%	71	47.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat,superfamily_PH domain-like
NBEA	26960	genome.wustl.edu	37	13	36125067	36125067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	p.T2235N	1.000	164	0%	78	53.8%	0	-	possibly_damaging(0.919)	tolerated(0.06)	deleterious(0.692)	superfamily_ARM repeat,superfamily_PH domain-like
NBEA	26960	genome.wustl.edu	37	13	36167508	36167508	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	p.F2407C	1.000	579	0%	95	49.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36167547	36167547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015678.4	+1	validated	p.S2420Y	1.000	477	0%	83	16.9%	1	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_ARM repeat
DCLK1	9201	genome.wustl.edu	37	13	36348758	36348758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000360631	-1	known	p.P713S	1.000	79	0%	25	40%	0	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	NULL
SOHLH2	54937	genome.wustl.edu	37	13	36748898	36748898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017826.2	-1	validated	p.K250N	0.824	171	0%	89	41.6%	0	-	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
SOHLH2	54937	genome.wustl.edu	37	13	36766002	36766002	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017826.2	-1	validated	p.E154*	0.068	146	0%	71	45.1%	0	-	-	-	-	NULL
CCDC169	728591	genome.wustl.edu	37	13	36822757	36822757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144981.1	-1	validated	p.E177D	0.997	190	0%	81	44.4%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
SPG20	23111	genome.wustl.edu	37	13	36886576	36886576	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142294.1	-1	reviewed	p.E508*	1.000	249	0%	76	35.5%	47	10.6%	-	-	-	NULL
LOC646879	646879	genome.wustl.edu	37	13	37368829	37368829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929841.3	+1	model	p.S70Y	0.278	17	0%	32	31.2%	0	-	-	-	-	NULL
CSNK1A1L	122011	genome.wustl.edu	37	13	37678544	37678544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145203.5	-1	validated	p.L284I	1.000	333	0%	280	47.5%	1	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_Kinase_like
CSNK1A1L	122011	genome.wustl.edu	37	13	37678814	37678814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145203.5	-1	validated	p.L194I	1.000	375	0%	324	43.8%	0	-	benign(0.022)	tolerated(0.05)	neutral(0.346)	superfamily_Kinase_like,HMMPfam_Pkinase
POSTN	10631	genome.wustl.edu	37	13	38153219	38153219	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006475.2	-1	validated	p.E611*	1.000	170	0%	93	33.3%	5	0%	-	-	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
TRPC4	7223	genome.wustl.edu	37	13	38211214	38211214	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003306.1	-1	validated	p.G925	0.057	181	0%	54	46.3%	0	-	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38211360	38211360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003306.1	-1	validated	p.A877S	0.945	166	0.6%	57	61.4%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
TRPC4	7223	genome.wustl.edu	37	13	38211559	38211559	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003306.1	-1	validated	p.P810	0.022	121	0%	24	45.8%	0	-	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38211670	38211670	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003306.1	-1	validated	p.S773	0.000	40	0%	14	42.9%	1	0%	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39263249	39263249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207361.4	+1	reviewed	p.D590N	1.000	218	0%	104	57.7%	3	0%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	NULL
FREM2	341640	genome.wustl.edu	37	13	39264900	39264900	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207361.4	+1	reviewed	p.D1140A	1.000	54	0%	44	61.4%	6	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FREM2	341640	genome.wustl.edu	37	13	39266288	39266288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207361.4	+1	reviewed	p.S1603R	1.000	96	0%	84	44%	4	50%	benign(0.045)	tolerated(0.1)	neutral(0.289)	NULL
FREM2	341640	genome.wustl.edu	37	13	39435628	39435628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207361.4	+1	reviewed	p.R2527H	1.000	299	0%	61	42.6%	12	50%	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	NULL
STOML3	161003	genome.wustl.edu	37	13	39541049	39541049	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145286.2	-1	validated	p.T263	0.997	101	0%	34	44.1%	0	-	-	-	-	NULL
PROSER1	80209	genome.wustl.edu	37	13	39587007	39587007	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025138.3	-1	validated	p.S794	0.039	130	0%	74	40.5%	49	57.1%	-	-	-	NULL
COG6	57511	genome.wustl.edu	37	13	40233567	40233567	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020751.2	+1	reviewed	p.N74H	1.000	123	0%	110	46.4%	2	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_COG6
COG6	57511	genome.wustl.edu	37	13	40233612	40233612	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020751.2	+1	reviewed	p.E89*	1.000	103	0%	108	48.1%	6	0%	-	-	-	HMMPfam_COG6
FOXO1	2308	genome.wustl.edu	37	13	41134083	41134083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002015.3	-1	reviewed	p.K515N	1.000	153	0%	73	42.5%	9	22.2%	probably_damaging(0.995)	tolerated(0.51)	neutral(0.467)	NULL
MRPS31	10240	genome.wustl.edu	37	13	41303566	41303566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005830.3	-1	reviewed	p.R377I	1.000	35	0%	105	41%	28	53.5%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
SLC25A15	10166	genome.wustl.edu	37	13	41382725	41382725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014252.3	+1	reviewed	p.K258N	0.222	136	0%	166	48.2%	23	43.4%	benign(0.138)	deleterious(0.01)	neutral(0.417)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
WBP4	11193	genome.wustl.edu	37	13	41636813	41636813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007187.3	+1	reviewed	p.F12L	1.000	99	0%	189	12.2%	24	8.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_ZnF_U1,HMMPfam_zf-U1,superfamily_SSF57667
KBTBD6	89890	genome.wustl.edu	37	13	41705201	41705201	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152903.4	-1	validated	p.R483*	0.995	123	0.8%	91	50.5%	1	0%	-	-	-	HMMSmart_Kelch,superfamily_Gal_oxid_central
KBTBD7	84078	genome.wustl.edu	37	13	41767417	41767417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032138.4	-1	provisional	p.S326Y	0.433	112	0%	60	45%	10	40%	possibly_damaging(0.848)	deleterious(0.05)	deleterious(0.671)	superfamily_Galactose oxidase central domain
KBTBD7	84078	genome.wustl.edu	37	13	41767598	41767598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032138.4	-1	provisional	p.R266C	1.000	118	0%	71	43.7%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
MTRF1	9617	genome.wustl.edu	37	13	41800663	41800663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004294.2	-1	reviewed	p.N344H	1.000	324	0%	242	43%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RF-1,superfamily_SSF75620
NAA16	79612	genome.wustl.edu	37	13	41894959	41894959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024561.4	+1	validated	p.R134Q	1.000	79	1.3%	69	37.7%	6	50%	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	superfamily_TPR-like
NAA16	79612	genome.wustl.edu	37	13	41947823	41947823	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024561.4	+1	validated	p.E736*	1.000	207	0%	100	50%	3	0%	-	-	-	superfamily_TPR-like
KIAA0564	23078	genome.wustl.edu	37	13	42164853	42164853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015058.1	-1	validated	p.L1679V	0.991	305	0%	95	48.4%	7	57.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42249377	42249377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015058.1	-1	validated	p.K1461N	1.000	243	0%	104	44.2%	5	60%	benign(0.131)	tolerated(0.19)	neutral(0.060)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42273324	42273324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015058.1	-1	validated	p.F1149L	1.000	109	0%	35	42.9%	3	33.3%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42385433	42385433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015058.1	-1	validated	p.R664Q	0.977	148	0%	26	42.3%	3	33.3%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DGKH	160851	genome.wustl.edu	37	13	42733423	42733423	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178009.2	+1	reviewed	p.K215T	1.000	50	0%	28	60.7%	0	-	benign(0.39)	deleterious(0)	deleterious(0.570)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
EPSTI1	94240	genome.wustl.edu	37	13	43491721	43491721	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002264.1	-1	validated	p.E244*	0.975	704	0%	284	35.9%	15	0%	-	-	-	NULL
CCDC122	160857	genome.wustl.edu	37	13	44433008	44433008	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144974.3	-1	validated	p.K194T	0.995	153	0%	135	40%	6	16.6%	benign(0.002)	tolerated(0.25)	neutral(0.037)	NULL
LACC1	144811	genome.wustl.edu	37	13	44464275	44464275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128303.1	+1	validated	p.L387I	1.000	235	0%	68	47.1%	4	25%	probably_damaging(0.987)	tolerated(0.2)	deleterious(0.485)	HMMPfam_Cu-oxidase_4,superfamily_CNF1/YfiH-like putative cysteine hydrolases
NUFIP1	26747	genome.wustl.edu	37	13	45556268	45556268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012345.2	-1	validated	p.R145Q	0.100	125	0%	140	45%	8	25%	benign(0.005)	tolerated(0.24)	neutral(0.037)	NULL
KCTD4	386618	genome.wustl.edu	37	13	45768390	45768390	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198404.2	-1	validated	p.R105*	1.000	170	0%	144	39.6%	0	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
COG3	83548	genome.wustl.edu	37	13	46085982	46085982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031431.2	+1	reviewed	p.K601T	1.000	221	0%	105	43.8%	16	31.2%	benign(0.019)	tolerated(0.51)	neutral(0.010)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46124167	46124167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182542.2	-1	predicted	p.N503H	1.000	213	0%	113	40.7%	0	-	benign(0.005)	tolerated(0.21)	neutral(0.044)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46142531	46142531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182542.2	-1	predicted	p.A369V	0.000	564	0%	316	41.1%	0	-	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46170819	46170819	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182542.2	-1	predicted	p.E108*	0.000	1589	0%	575	44.7%	0	-	-	-	-	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46537965	46537965	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015070.3	-1	validated	p.L1563V	0.001	75	0%	29	31%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46549967	46549967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015070.3	-1	validated	p.R640I	1.000	934	0.1%	98	38.8%	41	51.2%	unknown(0)	deleterious(0.02)	-	NULL
CPB2	1361	genome.wustl.edu	37	13	46632468	46632468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001872.3	-1	reviewed	p.Y282C	0.062	219	0%	84	40.5%	0	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
LCP1	3936	genome.wustl.edu	37	13	46716540	46716540	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002298.4	-1	reviewed	p.A463	0.236	157	0%	64	50%	12	0%	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
LCP1	3936	genome.wustl.edu	37	13	46718606	46718606	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002298.4	-1	reviewed	p.G408	0.000	200	0%	158	43.7%	13	7.6%	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
ESD	2098	genome.wustl.edu	37	13	47355735	47355735	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001984.1	-1	reviewed	p.N133H	1.000	86	0%	23	39.1%	149	48.3%	possibly_damaging(0.748)	tolerated(0.05)	deleterious(0.620)	HMMPfam_Esterase,superfamily_SSF53474
HTR2A	3356	genome.wustl.edu	37	13	47409284	47409284	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000621.3	-1	reviewed	p.I368	0.812	190	0%	50	44%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HTR2A	3356	genome.wustl.edu	37	13	47409732	47409732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000621.3	-1	reviewed	p.S219L	0.554	55	0%	17	35.3%	0	-	benign(0.208)	tolerated(0.19)	neutral(0.070)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SUCLA2	8803	genome.wustl.edu	37	13	48562731	48562731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003850.2	-1	reviewed	p.R160Q	1.000	383	0%	298	43.6%	46	58.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ATP-grasp_2,superfamily_Glutathione synthetase ATP-binding domain-like
NUDT15	55270	genome.wustl.edu	37	13	48619883	48619883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018283.1	+1	provisional	p.P148Q	1.000	222	0%	117	37.6%	39	56.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Nudix
ITM2B	9445	genome.wustl.edu	37	13	48830415	48830415	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021999.4	+1	reviewed	p.E117*	1.000	149	0%	72	43.1%	285	1.4%	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	48919244	48919244	+	Nonsense_Mutation	SNP	G	G	T	rs121913296		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000321.2	+1	reviewed	p.E137*	1.000	205	0%	126	86.5%	10	100%	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	48939041	48939041	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000321.2	+1	reviewed	p.V291	1.000	80	0%	87	56.3%	4	50%	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	48951156	48951156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000321.2	+1	reviewed	p.E440K	0.998	157	0%	105	47.6%	6	33.3%	benign(0.051)	tolerated(0.15)	neutral(0.244)	HMMPfam_RB_A,superfamily_Cyclin-like
CAB39L	81617	genome.wustl.edu	37	13	49933943	49933943	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079670.1	-1	validated	p.F101C	1.000	314	0%	84	14.3%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mo25,superfamily_ARM-type_fold
PHF11	51131	genome.wustl.edu	37	13	50092274	50092274	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040443.1	+1	validated	p.R149*	0.000	35	0%	80	53.7%	20	5%	-	-	-	HMMSmart_PHD
PHF11	51131	genome.wustl.edu	37	13	50100566	50100566	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000426879	+1	known	p.S226L	1.000	119	0%	168	47%	32	25%	-	-	-	NULL
SERPINE3	647174	genome.wustl.edu	37	13	51936038	51936038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001101320.1	+1	validated	p.V394L	0.001	235	0%	50	44%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
INTS6	26512	genome.wustl.edu	37	13	51943160	51943160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012141.2	-1	reviewed	p.K797N	1.000	509	0%	98	34.7%	29	51.7%	benign(0.025)	tolerated(0.3)	neutral(0.030)	NULL
WDFY2	115825	genome.wustl.edu	37	13	52234739	52234739	+	Missense_Mutation	SNP	C	C	T	rs188808385	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052950.3	+1	reviewed	p.R49C	1.000	317	0%	135	44.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CCDC70	83446	genome.wustl.edu	37	13	52440036	52440036	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031290.2	+1	validated	p.E174	0.220	117	0%	48	41.7%	0	-	-	-	-	NULL
NEK5	341676	genome.wustl.edu	37	13	52661489	52661489	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199289.1	-1	provisional	p.N459	0.000	128	0%	229	46.7%	0	-	-	-	-	NULL
CKAP2	26586	genome.wustl.edu	37	13	53035040	53035040	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098525.1	+1	validated	p.D55E	0.000	61	0%	121	42.1%	25	52%	benign(0.059)	tolerated(0.21)	neutral(0.048)	NULL
SUGT1	10910	genome.wustl.edu	37	13	53254148	53254148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130912.1	+1	reviewed	p.R285I	1.000	245	0%	122	40.2%	99	36.3%	possibly_damaging(0.513)	tolerated(0.16)	neutral(0.232)	HMMPfam_SGS,superfamily_HSP20-like chaperones
OLFM4	10562	genome.wustl.edu	37	13	53602993	53602993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006418.3	+1	reviewed	p.L8I	0.001	70	0%	34	38.2%	0	-	unknown(0)	deleterious(0)	-	NULL
OLFM4	10562	genome.wustl.edu	37	13	53624856	53624856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006418.3	+1	reviewed	p.D495N	1.000	121	0%	43	34.9%	0	-	possibly_damaging(0.897)	tolerated(0.22)	neutral(0.396)	HMMPfam_OLF,HMMSmart_OLF
LOC341689	341689	genome.wustl.edu	37	13	59103277	59103277	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_017487.3	+1	model	NULL	0.480	119	0%	175	46.9%	0	-	-	-	-	-
LOC341689	341689	genome.wustl.edu	37	13	59103600	59103600	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_017487.3	+1	model	NULL	0.115	139	0%	164	44.5%	0	-	-	-	-	-
LOC341689	341689	genome.wustl.edu	37	13	59104627	59104627	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_017487.3	+1	model	NULL	0.058	267	0%	172	45.3%	0	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60348377	60348377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042517.1	-1	validated	p.R1089W	1.000	65	0%	81	34.6%	16	12.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DIAPH3	81624	genome.wustl.edu	37	13	60498948	60498948	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042517.1	-1	validated	p.E711*	1.000	67	0%	43	41.9%	11	27.2%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
TDRD3	81550	genome.wustl.edu	37	13	61041427	61041427	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030794.2	+1	validated	p.N44H	1.000	461	0%	92	37%	14	42.8%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
TDRD3	81550	genome.wustl.edu	37	13	61102603	61102603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030794.2	+1	validated	p.R322Q	1.000	58	0%	49	49%	17	47%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	NULL
PCDH20	64881	genome.wustl.edu	37	13	61986215	61986215	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022843.3	-1	validated	p.W673G	1.000	145	0%	51	37.3%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH20	64881	genome.wustl.edu	37	13	61987190	61987190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022843.3	-1	validated	p.D348Y	1.000	180	0%	60	53.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH9	5101	genome.wustl.edu	37	13	67799840	67799840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203487.2	-1	reviewed	p.E911D	1.000	76	0%	34	41.2%	0	-	probably_damaging(1)	tolerated(0.67)	deleterious(0.502)	HMMPfam_Protocadherin
PCDH9	5101	genome.wustl.edu	37	13	67800247	67800247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203487.2	-1	reviewed	p.D776N	1.000	192	0%	64	34.4%	0	-	benign(0.334)	deleterious(0)	deleterious(0.549)	HMMSmart_SM00112,superfamily_Cadherin-like
PCDH9	5101	genome.wustl.edu	37	13	67802188	67802188	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203487.2	-1	reviewed	p.K129Q	1.000	91	0%	89	42.7%	0	-	probably_damaging(0.956)	tolerated(0.27)	neutral(0.433)	HMMSmart_SM00112,superfamily_Cadherin-like
KLHL1	57626	genome.wustl.edu	37	13	70456525	70456525	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020866.2	-1	validated	p.E373*	1.000	179	0%	61	41%	0	-	-	-	-	HMMPfam_BACK
BORA	79866	genome.wustl.edu	37	13	73320648	73320648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024808.2	+1	validated	p.K294T	1.000	29	0%	14	35.7%	14	42.8%	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
PIBF1	10464	genome.wustl.edu	37	13	73482799	73482799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006346.2	+1	validated	p.I540R	1.000	136	0%	65	41.5%	19	57.8%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
KLF12	11278	genome.wustl.edu	37	13	74420428	74420428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007249.4	-1	validated	p.S69L	0.997	68	0%	29	48.3%	3	33.3%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75861061	75861061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014832.2	-1	validated	p.K1255R	1.000	378	0.3%	80	43.8%	3	0%	benign(0.003)	tolerated(0.76)	neutral(0.001)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75898521	75898521	+	Nonsense_Mutation	SNP	G	G	A	rs61736969	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014832.2	-1	validated	p.R684*	0.991	277	0%	144	47.9%	0	-	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76374826	76374826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005358.5	+1	reviewed	p.E209K	1.000	67	0%	23	65.2%	17	47%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_Calponin-homology
LMO7	4008	genome.wustl.edu	37	13	76381685	76381685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015842.2	+1	reviewed	p.K189N	0.870	125	0%	60	51.7%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
LMO7	4008	genome.wustl.edu	37	13	76395482	76395482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015842.2	+1	reviewed	p.E560K	0.884	189	0%	63	34.9%	22	22.7%	benign(0.07)	deleterious(0.01)	neutral(0.411)	NULL
LMO7	4008	genome.wustl.edu	37	13	76409422	76409422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015842.2	+1	reviewed	p.K861Q	0.919	250	0%	63	49.2%	11	36.3%	possibly_damaging(0.952)	deleterious(0.02)	deleterious(0.778)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77619573	77619573	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000429715	-1	known	p.T1042P	0.662	136	0%	77	48.1%	24	12.5%	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77640212	77640212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.R4118Q	1.000	148	0%	57	56.1%	14	78.5%	probably_damaging(0.967)	tolerated(0.27)	neutral(0.443)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77671680	77671680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.K3165N	0.989	88	0%	39	33.3%	2	100%	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77671898	77671898	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.E3093*	1.000	95	0%	24	45.8%	6	33.3%	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77738655	77738655	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.E2123*	1.000	165	0%	105	60%	0	-	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77740653	77740653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.E2013K	1.000	63	0%	53	43.4%	3	0%	probably_damaging(0.959)	deleterious(0.03)	deleterious(0.767)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77750673	77750673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.D1773Y	1.000	205	0%	103	35.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PHR
MYCBP2	23077	genome.wustl.edu	37	13	77760086	77760086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.D1417G	1.000	127	0%	63	41.3%	4	25%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77786162	77786162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	p.R1026Q	1.000	165	0%	92	41.3%	1	100%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	superfamily_RCC1/BLIP-II
MYCBP2	23077	genome.wustl.edu	37	13	77807290	77807290	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015057.4	-1	validated	e18+1	1.000	281	0%	93	43%	0	-	-	-	-	-
SCEL	8796	genome.wustl.edu	37	13	78142432	78142432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144777.2	+1	validated	p.S121N	0.000	420	0%	196	40.3%	2	50%	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
SCEL	8796	genome.wustl.edu	37	13	78176238	78176238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144777.2	+1	validated	p.R319M	0.009	156	0%	77	48.1%	0	-	benign(0.345)	deleterious(0)	deleterious(0.553)	NULL
SLAIN1	122060	genome.wustl.edu	37	13	78320713	78320713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040153.2	+1	validated	p.L86F	1.000	197	0%	21	42.9%	13	53.8%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
SLAIN1	122060	genome.wustl.edu	37	13	78335188	78335188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040153.2	+1	validated	p.S306L	1.000	101	0%	19	36.8%	23	52.1%	possibly_damaging(0.521)	deleterious(0.01)	deleterious(0.581)	NULL
EDNRB	1910	genome.wustl.edu	37	13	78472380	78472380	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000115.2	-1	reviewed	p.H428	0.958	289	0%	30	40%	0	-	-	-	-	NULL
EDNRB	1910	genome.wustl.edu	37	13	78477408	78477408	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000115.2	-1	reviewed	p.V228	0.998	127	0%	26	53.8%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EDNRB	1910	genome.wustl.edu	37	13	78492730	78492730	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000377211	-1	known	p.T83	0.000	25	0.000	7	0.714	1	0%	-	-	-	NULL
RNF219	79596	genome.wustl.edu	37	13	79190752	79190752	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024546.3	-1	validated	p.E382*	1.000	165	0%	99	36.4%	17	47%	-	-	-	NULL
RNF219	79596	genome.wustl.edu	37	13	79212997	79212997	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024546.3	-1	validated	p.I170	0.556	376	0%	397	37.3%	10	60%	-	-	-	NULL
RBM26	64062	genome.wustl.edu	37	13	79911337	79911337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022118.3	-1	validated	p.R851Q	1.000	183	0%	41	36.6%	49	44.8%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_SSF54928
SLITRK1	114798	genome.wustl.edu	37	13	84454314	84454314	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052910.1	-1	reviewed	p.F443	0.995	107	0%	84	36.9%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
SLITRK1	114798	genome.wustl.edu	37	13	84454383	84454383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052910.1	-1	reviewed	p.K420N	1.000	148	0%	116	44.8%	0	-	benign(0.025)	tolerated(0.49)	neutral(0.011)	HMMPfam_LRR_1,superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86368383	86368383	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032229.2	-1	validated	p.S754*	0.986	185	0%	73	37%	0	-	-	-	-	NULL
SLITRK6	84189	genome.wustl.edu	37	13	86368951	86368951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032229.2	-1	validated	p.L565I	1.000	215	0%	42	40.5%	1	0%	possibly_damaging(0.485)	tolerated(0.49)	neutral(0.172)	HMMSmart_SM00082,superfamily_L domain-like
GPC5	2262	genome.wustl.edu	37	13	92345451	92345451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004466.4	+1	reviewed	p.E112D	1.000	114	0%	56	53.6%	0	-	possibly_damaging(0.559)	tolerated(0.25)	neutral(0.228)	HMMPfam_Glypican
DCT	1638	genome.wustl.edu	37	13	95092217	95092217	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001129889.1	-1	validated	p.R532*	0.313	191	0%	35	45.7%	0	-	-	-	-	NULL
DCT	1638	genome.wustl.edu	37	13	95104904	95104904	+	Missense_Mutation	SNP	G	G	A	rs192427783	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001129889.1	-1	validated	p.R398C	0.056	187	0%	145	50.3%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ABCC4	10257	genome.wustl.edu	37	13	95715081	95715081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005845.3	-1	reviewed	p.K1081N	0.998	122	0%	110	41.8%	24	66.6%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DZIP1	22873	genome.wustl.edu	37	13	96239824	96239824	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198968.2	-1	validated	p.I729	0.001	399	0%	77	48.1%	17	58.8%	-	-	-	NULL
DNAJC3	5611	genome.wustl.edu	37	13	96438301	96438301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006260.3	+1	reviewed	p.Y395C	1.000	67	0%	43	39.5%	41	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
HS6ST3	266722	genome.wustl.edu	37	13	97484750	97484750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153456.2	+1	validated	p.F238L	1.000	110	0%	91	35.2%	0	-	benign(0.183)	tolerated(0.23)	neutral(0.059)	HMMPfam_HS6ST
IPO5	3843	genome.wustl.edu	37	13	98658482	98658482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002271.4	+1	reviewed	p.D550E	0.993	199	0%	136	37.5%	86	51.1%	possibly_damaging(0.484)	deleterious(0.01)	deleterious(0.566)	superfamily_ARM-type_fold
FARP1	10160	genome.wustl.edu	37	13	99045956	99045956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005766.2	+1	reviewed	p.S383L	0.770	104	0%	100	46%	76	51.3%	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
FARP1	10160	genome.wustl.edu	37	13	99099066	99099066	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005766.2	+1	reviewed	p.F1017	0.993	172	0%	54	38.9%	252	43.2%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
DOCK9	23348	genome.wustl.edu	37	13	99515327	99515327	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130049.1	-1	validated	p.N1176	0.323	193	0%	41	41.5%	6	16.6%	-	-	-	NULL
DOCK9	23348	genome.wustl.edu	37	13	99607778	99607778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130049.1	-1	validated	p.D53N	1.000	130	0%	85	51.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TM9SF2	9375	genome.wustl.edu	37	13	100169877	100169877	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004800.1	+1	provisional	p.E61*	1.000	219	0%	182	37.4%	30	16.6%	-	-	-	NULL
TM9SF2	9375	genome.wustl.edu	37	13	100191808	100191808	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004800.1	+1	provisional	p.F275	0.003	245	0%	117	86.3%	82	90.2%	-	-	-	HMMPfam_EMP70
PCCA	5095	genome.wustl.edu	37	13	100809577	100809577	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000282.3	+1	reviewed	p.E151*	1.000	307	0%	232	46.1%	5	40%	-	-	-	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like
NALCN	259232	genome.wustl.edu	37	13	101725982	101725982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052867.2	-1	validated	p.R1384Q	1.000	186	0%	79	25.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	101844369	101844369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052867.2	-1	validated	p.G555R	1.000	166	0%	25	60%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TPP2	7174	genome.wustl.edu	37	13	103268763	103268763	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003291.2	+1	reviewed	p.K136N	0.993	103	0%	31	38.7%	8	50%	possibly_damaging(0.555)	tolerated(0.06)	deleterious(0.512)	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
TPP2	7174	genome.wustl.edu	37	13	103292684	103292684	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003291.2	+1	reviewed	p.R660*	1.000	184	0%	95	42.1%	13	15.3%	-	-	-	NULL
TPP2	7174	genome.wustl.edu	37	13	103330637	103330637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003291.2	+1	reviewed	p.M1241V	1.000	146	0%	81	40.7%	25	16%	benign(0.036)	tolerated(0.58)	neutral(0.007)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103384317	103384317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.E6092*	0.485	609	0%	71	43.7%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103384604	103384604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.S5996Y	0.219	485	0%	82	52.4%	0	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103384791	103384791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.D5934Y	0.002	555	0%	72	44.4%	0	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103386013	103386013	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.L5526	0.000	358	0%	36	52.8%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103387855	103387855	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.N4912	0.000	553	0%	54	40.7%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103387989	103387989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.D4868Y	0.001	903	0%	75	42.7%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103388313	103388313	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.L4760	0.000	860	0%	75	44%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103388528	103388528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.S4688Y	0.000	775	0%	60	38.3%	0	-	possibly_damaging(0.741)	deleterious(0.01)	deleterious(0.677)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103389115	103389115	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.S4492R	0.000	1086	0%	72	45.8%	0	-	benign(0.127)	tolerated(0.2)	neutral(0.060)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103390248	103390248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.L4196M	0.000	751	0.1%	121	44.6%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103391939	103391939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.I3632S	0.000	338	0%	54	51.9%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103392320	103392320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.S3505L	0.000	362	0%	37	37.8%	1	0%	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394081	103394081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.S2918L	0.000	111	0.9%	24	45.8%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394402	103394402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.L2811R	0.001	335	0%	38	34.2%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103399643	103399643	+	Missense_Mutation	SNP	C	C	A	rs192878763	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344085.1	-1	model	p.G1064V	0.000	189	0%	59	49.2%	0	-	-	-	-	NULL
ERCC5	2073	genome.wustl.edu	37	13	103524570	103524570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000123.2	+1	reviewed	p.K901Q	1.000	146	0%	85	49.4%	42	40.4%	possibly_damaging(0.819)	tolerated(0.08)	deleterious(0.609)	superfamily_5' to 3' exonuclease C-terminal subdomain
ERCC5	2073	genome.wustl.edu	37	13	103525682	103525682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000123.2	+1	reviewed	p.D985N	0.385	167	0%	74	43.2%	49	42.8%	benign(0)	tolerated(1)	-	superfamily_5' to 3' exonuclease C-terminal subdomain
ERCC5	2073	genome.wustl.edu	37	13	103527669	103527669	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000123.2	+1	reviewed	p.I993L	0.954	63	0%	65	40%	51	43.1%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_5' to 3' exonuclease C-terminal subdomain
LIG4	3981	genome.wustl.edu	37	13	108860884	108860884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098268.1	-1	reviewed	p.I911M	0.992	39	0%	47	53.2%	5	100%	benign(0.199)	tolerated(0.06)	neutral(0.342)	superfamily_BRCT
LIG4	3981	genome.wustl.edu	37	13	108863095	108863095	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098268.1	-1	reviewed	p.L174	0.196	62	0%	143	35.7%	1	0%	-	-	-	HMMPfam_DNA_ligase_A_N
MYO16	23026	genome.wustl.edu	37	13	109379794	109379794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015011.1	+1	validated	p.R102W	1.000	346	0.3%	120	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MYO16	23026	genome.wustl.edu	37	13	109831939	109831939	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015011.1	+1	validated	p.G1769	0.000	266	0%	86	45.3%	0	-	-	-	-	NULL
COL4A1	1282	genome.wustl.edu	37	13	110829038	110829038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001845.4	-1	reviewed	p.R968Q	0.044	106	0%	60	46.7%	145	28.9%	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	HMMPfam_Collagen
COL4A1	1282	genome.wustl.edu	37	13	110847385	110847385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001845.4	-1	reviewed	p.E456K	0.890	52	0%	55	43.6%	58	27.5%	unknown(0)	tolerated(0.9)	-	HMMPfam_Collagen
COL4A2	1284	genome.wustl.edu	37	13	111109699	111109699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001846.2	+1	reviewed	p.F450C	0.893	106	0%	78	44.9%	75	29.3%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_Collagen
COL4A2	1284	genome.wustl.edu	37	13	111141854	111141854	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001846.2	+1	reviewed	p.F1090	0.000	97	0%	93	38.7%	256	37.8%	-	-	-	HMMPfam_Collagen
TUBGCP3	10426	genome.wustl.edu	37	13	113223473	113223473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006322.4	-1	provisional	p.K59N	1.000	230	0%	222	44.6%	6	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MCF2L	23263	genome.wustl.edu	37	13	113732686	113732686	+	Missense_Mutation	SNP	G	G	A	rs183892240	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112732.1	+1	validated	p.R614Q	0.819	22	0%	33	48.5%	18	61.1%	probably_damaging(0.967)	tolerated(0.22)	neutral(0.451)	NULL
F7	2155	genome.wustl.edu	37	13	113771900	113771900	+	Silent	SNP	C	C	T	rs34946892		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000131.3	+1	reviewed	p.I265	0.000	31	0%	61	44.3%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
F10	2159	genome.wustl.edu	37	13	113793763	113793763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000504.3	+1	reviewed	p.E117K	0.074	102	0%	162	46.3%	1	0%	benign(0.072)	tolerated(0.05)	neutral(0.350)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2
F10	2159	genome.wustl.edu	37	13	113798308	113798308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000504.3	+1	reviewed	p.D216N	0.000	22	0%	31	58.1%	0	-	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
ADPRHL1	113622	genome.wustl.edu	37	13	114088116	114088116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138430.3	-1	validated	p.L149P	0.999	8	0.000	18	0.722	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
TMCO3	55002	genome.wustl.edu	37	13	114150160	114150160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017905.4	+1	validated	p.E88D	1.000	39	0%	69	49.3%	22	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMCO3	55002	genome.wustl.edu	37	13	114152666	114152666	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017905.4	+1	validated	p.E152*	1.000	67	0%	127	40.2%	31	16.1%	-	-	-	NULL
TMCO3	55002	genome.wustl.edu	37	13	114157838	114157838	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017905.4	+1	validated	p.E325*	1.000	363	0%	887	42.6%	5	0%	-	-	-	HMMPfam_Na_H_Exchanger
GAS6	2621	genome.wustl.edu	37	13	114542745	114542745	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000820.2	-1	reviewed	p.F141C	0.902	61	0%	37	48.6%	12	0%	possibly_damaging(0.514)	tolerated(0.18)	neutral(0.229)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF,superfamily_SSF57196
CHAMP1	283489	genome.wustl.edu	37	13	115091033	115091033	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032436.2	+1	validated	p.S572	0.547	58	0%	56	50%	17	58.8%	-	-	-	NULL
LOC100132257	100132257	genome.wustl.edu	37	14	19114837	19114837	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343306.1	+1	model	p.L95V	0.578	29	0%	38	18.4%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
OR11H12	440153	genome.wustl.edu	37	14	19378179	19378179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013354.1	+1	provisional	p.P196T	0.010	836	0.1%	163	11.7%	0	-	benign(0.057)	tolerated(0.29)	neutral(0.033)	HMMPfam_7tm_1,superfamily_SSF81321
OR4Q3	441669	genome.wustl.edu	37	14	20215705	20215705	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172194.1	+1	provisional	p.L40Q	0.906	517	0%	100	39%	0	-	possibly_damaging(0.826)	deleterious(0.02)	deleterious(0.697)	superfamily_SSF81321
OR4Q3	441669	genome.wustl.edu	37	14	20215793	20215793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172194.1	+1	provisional	p.F69L	0.720	396	0%	71	28.2%	0	-	benign(0.009)	tolerated(0.37)	neutral(0.019)	HMMPfam_7tm_1,superfamily_SSF81321
OR4N2	390429	genome.wustl.edu	37	14	20296241	20296241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004723.1	+1	provisional	p.L212M	0.000	488	0%	82	31.7%	0	-	possibly_damaging(0.952)	tolerated(0.06)	deleterious(0.718)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K2	390431	genome.wustl.edu	37	14	20344676	20344676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005501.1	+1	provisional	p.D84Y	0.960	376	0%	232	30.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4K5	79317	genome.wustl.edu	37	14	20388782	20388782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005483.1	+1	provisional	p.S6Y	0.000	615	0%	141	25.5%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	superfamily_SSF81321
OR4K5	79317	genome.wustl.edu	37	14	20388830	20388830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005483.1	+1	provisional	p.K22I	0.001	632	0%	150	31.3%	0	-	benign(0.291)	deleterious(0)	deleterious(0.534)	superfamily_SSF81321
OR4K5	79317	genome.wustl.edu	37	14	20389478	20389478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005483.1	+1	provisional	p.S238Y	0.016	837	0%	164	28.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K1	79544	genome.wustl.edu	37	14	20403995	20403995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004063.2	+1	validated	p.S57Y	0.958	709	0%	346	28.3%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K1	79544	genome.wustl.edu	37	14	20404356	20404356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004063.2	+1	validated	p.F177L	0.960	333	0%	93	29%	0	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K15	81127	genome.wustl.edu	37	14	20443771	20443771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005486.1	+1	provisional	p.R32W	0.783	350	0.3%	53	30.2%	0	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	superfamily_SSF81321
OR4K13	390433	genome.wustl.edu	37	14	20502557	20502557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004714.1	-1	provisional	p.D121Y	0.997	163	0%	27	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR4L1	122742	genome.wustl.edu	37	14	20528481	20528481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004717.1	+1	provisional	p.S93Y	0.992	207	0%	46	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR11H4	390442	genome.wustl.edu	37	14	20711030	20711030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004479.1	+1	provisional	p.F27S	1.000	89	0%	47	48.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
OR11H4	390442	genome.wustl.edu	37	14	20711822	20711822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004479.1	+1	provisional	p.T291M	0.760	88	0%	108	40.7%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TTC5	91875	genome.wustl.edu	37	14	20766960	20766960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138376.2	-1	validated	p.Q212R	1.000	328	0%	109	40.4%	7	42.8%	possibly_damaging(0.643)	tolerated(0.12)	deleterious(0.486)	superfamily_SSF48452
TEP1	7011	genome.wustl.edu	37	14	20863750	20863750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007110.4	-1	reviewed	p.R596Q	0.000	180	0%	118	42.4%	1	0%	benign(0.021)	tolerated(0.62)	neutral(0.005)	HMMPfam_TROVE
TEP1	7011	genome.wustl.edu	37	14	20863770	20863770	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007110.4	-1	reviewed	p.S589	0.549	162	0.6%	119	45.4%	0	-	-	-	-	HMMPfam_TROVE
OSGEP	55644	genome.wustl.edu	37	14	20920238	20920238	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017807.2	-1	validated	p.K102	1.000	118	0%	32	43.8%	41	39%	-	-	-	HMMPfam_Peptidase_M22,PatternScan_GLYCOPROTEASE,superfamily_SSF53067
EDDM3A	10876	genome.wustl.edu	37	14	21215930	21215930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006683.4	+1	validated	p.S64N	0.000	137	0%	119	52.1%	0	-	benign(0.048)	tolerated(0.7)	neutral(0.005)	superfamily_RNaseA
RNASE2	6036	genome.wustl.edu	37	14	21424308	21424308	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002934.2	+1	validated	p.A126	0.000	276	0.4%	75	48%	4	0%	-	-	-	HMMPfam_RnaseA,HMMSmart_RNAse_Pc,superfamily_RNaseA
ENSG00000246096	0	genome.wustl.edu	37	14	21464038	21464038	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000500338	-1	known	NULL	0.002	278	0%	238	42.9%	0	-	-	-	-	-
RPGRIP1	57096	genome.wustl.edu	37	14	21771650	21771650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020366.3	+1	reviewed	p.N250H	0.019	69	0%	87	34.5%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
RPGRIP1	57096	genome.wustl.edu	37	14	21785977	21785977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020366.3	+1	reviewed	p.R425I	0.479	98	0%	31	45.2%	0	-	possibly_damaging(0.684)	tolerated(0.19)	neutral(0.293)	NULL
CHD8	57680	genome.wustl.edu	37	14	21870506	21870506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020920.3	-1	reviewed	p.N1012D	1.000	161	0%	71	39.4%	22	31.8%	benign(0.004)	tolerated(0.44)	neutral(0.013)	superfamily_P-loop containing nucleoside triphosphate hydrolases
METTL3	56339	genome.wustl.edu	37	14	21966407	21966407	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019852.3	-1	reviewed	p.L580V	0.967	196	0%	128	34.4%	45	40%	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
METTL3	56339	genome.wustl.edu	37	14	21967459	21967459	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019852.3	-1	reviewed	p.I503	0.230	278	0%	119	47.9%	80	32.5%	-	-	-	HMMPfam_MT-A70
OR4E2	26686	genome.wustl.edu	37	14	22134019	22134019	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001912.1	+1	validated	p.S241	0.207	300	0%	72	37.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CDH24	64403	genome.wustl.edu	37	14	23524790	23524790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022478.3	-1	validated	p.F51L	1.000	25	0%	35	48.6%	5	40%	probably_damaging(0.983)	tolerated(0.1)	deleterious(0.716)	HMMPfam_Cadherin,superfamily_Cadherin-like
CEBPE	1053	genome.wustl.edu	37	14	23588056	23588056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001805.2	-1	reviewed	p.P82L	0.983	37	0%	16	31.2%	0	-	probably_damaging(0.998)	tolerated(0.56)	deleterious(0.481)	NULL
CMTM5	116173	genome.wustl.edu	37	14	23848580	23848580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138460.2	+1	reviewed	p.G149R	0.005	85	0%	76	48.7%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
MYH6	4624	genome.wustl.edu	37	14	23851715	23851715	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002471.3	-1	validated	p.D1906E	0.975	255	0.4%	93	48.4%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Myosin_tail_1
MIR208A	406990	genome.wustl.edu	37	14	23857867	23857867	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000362287	-1	known	NULL	0.978	83	0%	47	46.8%	0	-	-	-	-	-
MYH6	4624	genome.wustl.edu	37	14	23869930	23869930	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002471.3	-1	validated	p.F466	0.998	75	0%	76	44.7%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23897865	23897865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000257.2	-1	reviewed	p.E474D	1.000	453	0%	207	41.5%	0	-	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23898261	23898261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000257.2	-1	reviewed	p.N437T	1.000	173	0%	58	36.2%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC16B	90668	genome.wustl.edu	37	14	24531739	24531739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138360.3	+1	validated	p.E844G	1.000	35	0%	33	48.5%	0	-	unknown(0)	deleterious(0)	-	NULL
CPNE6	9362	genome.wustl.edu	37	14	24542738	24542738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006032.2	+1	reviewed	p.S67P	0.985	51	0%	35	42.9%	0	-	possibly_damaging(0.901)	tolerated(0.08)	deleterious(0.657)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CPNE6	9362	genome.wustl.edu	37	14	24546491	24546491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006032.2	+1	reviewed	p.F476L	1.000	55	0%	46	10.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00327,superfamily_vWA-like
ADCY4	196883	genome.wustl.edu	37	14	24792142	24792142	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139247.2	-1	reviewed	p.I770	0.055	35	0%	26	50%	0	-	-	-	-	NULL
KHNYN	23351	genome.wustl.edu	37	14	24905359	24905359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015299.2	+1	validated	p.E553D	0.350	72	0%	61	42.6%	33	24.2%	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
NOVA1	4857	genome.wustl.edu	37	14	26949206	26949206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002515.2	-1	reviewed	p.V142I	1.000	260	0%	142	51.4%	0	-	possibly_damaging(0.907)	tolerated(0.38)	neutral(0.378)	NULL
NOVA1	4857	genome.wustl.edu	37	14	27064722	27064722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002515.2	-1	reviewed	p.S58R	1.000	93	0%	140	39.3%	0	-	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
PRKD1	5587	genome.wustl.edu	37	14	30046482	30046482	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002742.2	-1	validated	p.E901*	1.000	235	0%	21	28.6%	11	54.5%	-	-	-	NULL
G2E3	55632	genome.wustl.edu	37	14	31058655	31058655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017769.3	+1	validated	p.D68N	1.000	113	0%	97	43.3%	16	56.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SCFD1	23256	genome.wustl.edu	37	14	31109067	31109067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016106.2	+1	validated	p.R174C	1.000	190	0%	128	47.7%	36	55.5%	possibly_damaging(0.675)	tolerated(0.06)	deleterious(0.562)	HMMPfam_Sec1,superfamily_Sec1-like
STRN3	29966	genome.wustl.edu	37	14	31416358	31416358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083893.1	-1	validated	p.K218N	1.000	302	0%	150	39.3%	13	53.8%	possibly_damaging(0.699)	tolerated(0.34)	neutral(0.275)	NULL
HECTD1	25831	genome.wustl.edu	37	14	31647417	31647417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015382.2	-1	validated	p.L62I	1.000	193	0%	122	18.9%	10	10%	possibly_damaging(0.64)	tolerated(0.1)	deleterious(0.510)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31765146	31765146	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015473.2	-1	validated	p.F1570C	1.000	274	0%	181	43.6%	10	30%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31817009	31817009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015473.2	-1	validated	p.S645Y	1.000	131	0%	65	49.2%	5	60%	benign(0.098)	deleterious(0)	neutral(0.452)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31855776	31855776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015473.2	-1	validated	p.V106I	0.077	128	0%	65	36.9%	3	33.3%	benign(0.001)	tolerated(0.4)	neutral(0.016)	superfamily_ARM repeat
ARHGAP5	394	genome.wustl.edu	37	14	32562015	32562015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001030055.1	+1	reviewed	p.L714I	1.000	56	0%	31	45.2%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33014920	33014920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004274.4	+1	reviewed	p.H354R	0.028	41	0%	19	36.8%	1	0%	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33015296	33015296	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004274.4	+1	reviewed	p.S479	0.854	54	0%	25	40%	0	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33292239	33292239	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004274.4	+1	reviewed	p.V1740	0.997	255	0.4%	30	50%	0	-	-	-	-	NULL
NPAS3	64067	genome.wustl.edu	37	14	34269487	34269487	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173159.2	+1	reviewed	p.F645	0.775	6	0.000	5	0.800	0	-	-	-	-	NULL
EGLN3	112399	genome.wustl.edu	37	14	34396185	34396185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022073.3	-1	validated	p.K223N	1.000	112	0%	66	39.4%	199	36.6%	benign(0.002)	tolerated(0.29)	neutral(0.029)	NULL
SNX6	58533	genome.wustl.edu	37	14	35055490	35055490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152233.2	-1	reviewed	p.R259I	1.000	110	0%	202	36.6%	59	44%	possibly_damaging(0.92)	deleterious(0.05)	deleterious(0.716)	HMMPfam_Vps5
BAZ1A	11177	genome.wustl.edu	37	14	35233994	35233994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013448.2	-1	validated	p.D1232G	0.997	843	0%	318	41.5%	52	55.7%	possibly_damaging(0.465)	deleterious(0.03)	deleterious(0.517)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35270332	35270332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013448.2	-1	validated	p.K310R	0.999	150	0%	307	44%	12	41.6%	possibly_damaging(0.925)	tolerated(0.13)	deleterious(0.626)	NULL
KIAA0391	9692	genome.wustl.edu	37	14	35592828	35592828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014672.2	+1	provisional	p.K126T	0.994	69	0%	97	43.3%	26	53.8%	possibly_damaging(0.619)	tolerated(0.3)	neutral(0.244)	NULL
RALGAPA1	253959	genome.wustl.edu	37	14	36155765	36155765	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194301.2	-1	provisional	p.R848*	1.000	55	0%	47	48.9%	6	16.6%	-	-	-	NULL
BRMS1L	84312	genome.wustl.edu	37	14	36300615	36300615	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032352.3	+1	reviewed	e2-1	1.000	145	0%	172	40.7%	0	-	-	-	-	-
SLC25A21	89874	genome.wustl.edu	37	14	37194792	37194792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030631.3	-1	validated	p.R141W	1.000	128	0%	68	38.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
MIPOL1	145282	genome.wustl.edu	37	14	37736254	37736254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138731.5	+1	validated	p.E44A	0.001	134	0%	40	50%	7	42.8%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
SSTR1	6751	genome.wustl.edu	37	14	38679327	38679327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001049.2	+1	reviewed	p.L245I	1.000	97	0%	29	48.3%	5	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
MIA2	117153	genome.wustl.edu	37	14	39722405	39722405	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054024.3	+1	validated	p.I639	0.001	106	0%	115	49.6%	0	-	-	-	-	NULL
LRFN5	145581	genome.wustl.edu	37	14	42356124	42356124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152447.3	+1	validated	p.R99Q	0.999	51	0%	72	48.6%	0	-	possibly_damaging(0.85)	tolerated(0.11)	deleterious(0.599)	HMMSmart_LRR_TYP,superfamily_SSF52058
FSCB	84075	genome.wustl.edu	37	14	44975624	44975624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032135.3	-1	validated	p.K189N	0.001	221	0%	198	52.5%	0	-	benign(0.379)	tolerated(0.58)	neutral(0.126)	NULL
KLHL28	54813	genome.wustl.edu	37	14	45415035	45415035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017658.3	-1	validated	p.E33K	1.000	96	0%	36	41.7%	2	0%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	superfamily_POZ domain,HMMPfam_BTB
FANCM	57697	genome.wustl.edu	37	14	45665528	45665528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020937.2	+1	reviewed	p.E1832*	0.982	167	0%	99	43.4%	4	25%	-	-	-	HMMPfam_ERCC4,superfamily_Restriction endonuclease-like
MIS18BP1	55320	genome.wustl.edu	37	14	45673642	45673642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018353.4	-1	validated	p.F1085L	0.182	245	0%	125	36%	34	44.1%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
MDGA2	161357	genome.wustl.edu	37	14	47426662	47426662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113498.1	-1	validated	p.K599N	1.000	137	0%	55	12.7%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	superfamily_SSF48726
LRR1	122769	genome.wustl.edu	37	14	50074144	50074144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152329.3	+1	reviewed	p.F103L	1.000	11	0%	65	49.2%	15	60%	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_L domain-like
DNAAF2	55172	genome.wustl.edu	37	14	50092616	50092616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018139.2	-1	reviewed	p.D720Y	0.000	118	0%	264	30.7%	34	29.4%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
POLE2	5427	genome.wustl.edu	37	14	50141138	50141138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002692.2	-1	provisional	p.V85I	0.996	132	0%	199	43.7%	7	57.1%	benign(0)	tolerated(0.64)	neutral(0.003)	NULL
NEMF	9147	genome.wustl.edu	37	14	50296127	50296127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004713.3	-1	validated	p.K321N	1.000	458	0%	360	39.4%	11	45.4%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
NEMF	9147	genome.wustl.edu	37	14	50318342	50318342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004713.3	-1	validated	p.R57Q	1.000	146	0%	271	38.7%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FbpA
ENSG00000248297	0	genome.wustl.edu	37	14	50459333	50459333	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508586	+1	novel	NULL	0.000	23	0%	47	31.9%	0	-	-	-	-	-
SOS2	6655	genome.wustl.edu	37	14	50612254	50612254	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006939.2	-1	validated	p.N815K	1.000	131	0%	242	50.4%	6	33.3%	benign(0.044)	tolerated(1)	neutral(0.003)	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
SOS2	6655	genome.wustl.edu	37	14	50623748	50623748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006939.2	-1	validated	p.R676C	1.000	129	0%	66	43.9%	20	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF_N,HMMSmart_RasGEFN,superfamily_Ras_GEF
L2HGDH	79944	genome.wustl.edu	37	14	50713876	50713876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024884.2	-1	reviewed	p.R431H	0.984	42	0%	64	39.1%	11	27.2%	possibly_damaging(0.736)	tolerated(0.1)	deleterious(0.555)	HMMPfam_DAO
MAP4K5	11183	genome.wustl.edu	37	14	50971534	50971534	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006575.3	-1	reviewed	p.I50	0.765	180	0%	44	50%	10	60%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TMX1	81542	genome.wustl.edu	37	14	51710664	51710664	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030755.4	+1	validated	p.A81	1.000	388	0%	220	49.5%	58	34.4%	-	-	-	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
C14orf166	51637	genome.wustl.edu	37	14	52460469	52460469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016039.2	+1	validated	p.K72R	1.000	429	0%	219	48.4%	245	23.6%	benign(0.022)	tolerated(0.45)	neutral(0.013)	HMMPfam_RLL
NID2	22795	genome.wustl.edu	37	14	52520480	52520480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007361.3	-1	validated	p.E416K	0.001	205	0%	57	42.1%	17	76.4%	benign(0.025)	tolerated(0.47)	neutral(0.012)	NULL
NID2	22795	genome.wustl.edu	37	14	52520522	52520522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007361.3	-1	validated	p.D402Y	0.017	191	0%	70	48.6%	18	11.1%	benign(0.054)	tolerated(0.06)	neutral(0.326)	NULL
PTGDR	5729	genome.wustl.edu	37	14	52741536	52741536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000953.2	+1	reviewed	p.L312I	0.057	129	0%	133	50.4%	0	-	possibly_damaging(0.696)	tolerated(0.3)	neutral(0.278)	HMMPfam_7tm_1,superfamily_SSF81321
TXNDC16	57544	genome.wustl.edu	37	14	52907383	52907383	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020784.2	-1	validated	p.I634M	0.997	143	0.7%	97	43.3%	26	46.1%	benign(0.011)	deleterious(0.02)	neutral(0.384)	NULL
GPR137C	283554	genome.wustl.edu	37	14	53098996	53098996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099652.1	+1	provisional	p.F279C	1.000	157	0%	77	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR137C	283554	genome.wustl.edu	37	14	53100371	53100371	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099652.1	+1	provisional	p.L331V	1.000	128	0%	69	47.8%	6	33.3%	possibly_damaging(0.931)	tolerated(0.15)	deleterious(0.619)	NULL
PSMC6	5706	genome.wustl.edu	37	14	53175044	53175044	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002806.3	+1	reviewed	p.E49*	1.000	142	0%	342	43.3%	51	3.9%	-	-	-	NULL
FERMT2	10979	genome.wustl.edu	37	14	53326418	53326418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134999.1	-1	validated	p.K588T	1.000	340	0%	196	41.8%	20	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DDHD1	80821	genome.wustl.edu	37	14	53529871	53529871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030637.2	-1	validated	p.S519Y	1.000	146	0%	62	46.8%	7	28.5%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
BMP4	652	genome.wustl.edu	37	14	54417556	54417556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001202.3	-1	reviewed	p.L141I	0.999	21	0%	16	56.2%	21	33.3%	benign(0.008)	tolerated(0.17)	neutral(0.059)	HMMPfam_TGFb_propeptide
GMFB	2764	genome.wustl.edu	37	14	54950452	54950452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004124.2	-1	validated	p.D13Y	1.000	97	0%	65	46.2%	38	50%	possibly_damaging(0.811)	deleterious(0)	deleterious(0.750)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
WDHD1	11169	genome.wustl.edu	37	14	55453875	55453875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007086.2	-1	reviewed	p.V586A	1.000	106	0%	69	43.5%	17	58.8%	benign(0.004)	tolerated(0.64)	neutral(0.003)	superfamily_WD40_like
TBPL2	387332	genome.wustl.edu	37	14	55895616	55895616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199047.2	-1	validated	p.D289N	1.000	105	0%	55	47.3%	0	-	benign(0.015)	tolerated(0.3)	neutral(0.029)	HMMPfam_TBP,superfamily_TFIID_C/glycos_N
TBPL2	387332	genome.wustl.edu	37	14	55903622	55903622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199047.2	-1	validated	p.E89*	0.077	223	0%	220	45.9%	0	-	-	-	-	NULL
KTN1	3895	genome.wustl.edu	37	14	56079160	56079160	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079521.1	+1	validated	p.E132*	1.000	61	0%	38	52.6%	34	8.8%	-	-	-	NULL
C14orf101	54916	genome.wustl.edu	37	14	57070639	57070639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017799.3	+1	validated	p.L151I	1.000	222	0%	92	41.3%	3	66.6%	probably_damaging(0.954)	tolerated(0.08)	deleterious(0.698)	NULL
EXOC5	10640	genome.wustl.edu	37	14	57684765	57684765	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006544.3	-1	reviewed	p.E516	1.000	111	0%	53	47.2%	12	16.6%	-	-	-	HMMPfam_Sec10
MUDENG	55745	genome.wustl.edu	37	14	57741641	57741641	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000446279	+1	known	p.L252	0.000	16	0%	43	48.8%	1	100%	-	-	-	NULL
C14orf37	145407	genome.wustl.edu	37	14	58605754	58605754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001872.2	-1	predicted	p.R108H	0.000	121	0%	82	25.6%	2	0%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58768334	58768334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002892.3	+1	reviewed	p.D15N	1.000	66	0%	60	41.7%	2	0%	benign(0.188)	deleterious(0)	neutral(0.462)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58831391	58831391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002892.3	+1	reviewed	p.Q862*	1.000	57	0%	67	35.8%	4	25%	-	-	-	NULL
DACT1	51339	genome.wustl.edu	37	14	59105207	59105207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016651.5	+1	validated	p.R96H	1.000	24	0%	13	46.2%	0	-	probably_damaging(0.999)	tolerated(0.53)	deleterious(0.498)	NULL
C14orf38	729665	genome.wustl.edu	37	14	60031890	60031890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000281581	-1	known	p.Y199H	0.089	797	0%	299	45.2%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
C14orf39	317761	genome.wustl.edu	37	14	60925416	60925416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174978.2	-1	validated	p.E387K	1.000	335	0%	81	39.5%	0	-	benign(0.224)	deleterious(0.03)	neutral(0.387)	NULL
C14orf39	317761	genome.wustl.edu	37	14	60938353	60938353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174978.2	-1	validated	p.R143I	0.990	235	0%	109	41.3%	0	-	possibly_damaging(0.8)	deleterious(0.01)	deleterious(0.707)	NULL
TRMT5	57570	genome.wustl.edu	37	14	61446306	61446306	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020810.2	-1	validated	p.E104*	1.000	232	0%	229	39.7%	15	60%	-	-	-	NULL
HIF1A	3091	genome.wustl.edu	37	14	62199237	62199237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001530.3	+1	validated	p.H292R	1.000	170	0.6%	81	34.6%	56	48.2%	benign(0.256)	deleterious(0.03)	neutral(0.391)	HMMSmart_SM00091,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
HIF1A	3091	genome.wustl.edu	37	14	62205023	62205023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001530.3	+1	validated	p.T490A	1.000	84	0%	97	41.2%	53	49%	benign(0.019)	tolerated(0.31)	neutral(0.028)	NULL
SYT16	83851	genome.wustl.edu	37	14	62547551	62547551	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031914.2	+1	validated	e4-1	1.000	46	0%	10	60%	0	-	-	-	-	-
RHOJ	57381	genome.wustl.edu	37	14	63749845	63749845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020663.3	+1	provisional	p.L137I	1.000	211	0%	66	40.9%	1	0%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP2R5E	5529	genome.wustl.edu	37	14	63861955	63861955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006246.2	-1	reviewed	p.E243D	1.000	14	0%	90	46.7%	24	37.5%	possibly_damaging(0.515)	deleterious(0)	deleterious(0.618)	HMMPfam_B56,superfamily_ARM repeat
SYNE2	23224	genome.wustl.edu	37	14	64460577	64460577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182914.2	+1	reviewed	p.K891E	0.026	72	0%	71	42.3%	6	66.6%	possibly_damaging(0.882)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64490980	64490980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182914.2	+1	reviewed	p.F1881L	1.000	69	0%	43	37.2%	1	0%	possibly_damaging(0.942)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64518414	64518414	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182914.2	+1	reviewed	p.L2595V	0.149	98	0%	97	48.5%	7	14.2%	probably_damaging(0.995)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64519655	64519655	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182914.2	+1	reviewed	p.I3008	0.097	34	0%	40	20%	10	20%	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64545313	64545313	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182914.2	+1	reviewed	p.E3718*	1.000	72	0%	128	43%	13	23%	-	-	-	HMMSmart_SPEC
SYNE2	23224	genome.wustl.edu	37	14	64560109	64560109	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182914.2	+1	reviewed	p.N4007H	0.908	95	0%	129	44.2%	7	28.5%	possibly_damaging(0.905)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64596502	64596502	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182914.2	+1	reviewed	p.K4674N	1.000	156	0%	103	34%	19	10.5%	unknown(0)	-	-	NULL
ZBTB25	7597	genome.wustl.edu	37	14	64954763	64954763	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006977.2	-1	validated	p.K62N	1.000	30	0%	65	47.7%	3	66.6%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
HSPA2	3306	genome.wustl.edu	37	14	65008734	65008734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021979.3	+1	validated	p.E389D	1.000	10	0%	17	41.2%	10	40%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_HSP70,superfamily_SSF100920
PPP1R36	145376	genome.wustl.edu	37	14	65041236	65041236	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172365.1	+1	predicted	p.Y199*	0.999	169	0%	78	50%	0	-	-	-	-	NULL
SPTB	6710	genome.wustl.edu	37	14	65252519	65252519	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024858.2	-1	reviewed	p.G1238*	0.033	106	0%	132	37.1%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MAX	4149	genome.wustl.edu	37	14	65543383	65543383	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002382.3	-1	reviewed	e5-2	1.000	127	0%	56	50%	26	92.3%	-	-	-	-
FUT8	2530	genome.wustl.edu	37	14	66083894	66083894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004480.3	+1	reviewed	p.R27I	0.995	105	0%	145	35.2%	0	-	unknown(0)	tolerated(0.08)	-	NULL
FUT8	2530	genome.wustl.edu	37	14	66096287	66096287	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178154.1	+1	reviewed	p.L187R	1.000	231	0%	98	41.8%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MPP5	64398	genome.wustl.edu	37	14	67768117	67768117	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022474.2	+1	validated	p.V196	0.998	106	0%	69	52.2%	15	53.3%	-	-	-	HMMSmart_SM00569,HMMPfam_L27
PLEK2	26499	genome.wustl.edu	37	14	67859109	67859109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016445.1	-1	provisional	p.E235D	1.000	253	0%	124	43.5%	5	20%	possibly_damaging(0.545)	tolerated(0.43)	neutral(0.199)	superfamily_SSF46785,superfamily_SSF50729
PLEKHH1	57475	genome.wustl.edu	37	14	68048796	68048796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020715.2	+1	validated	p.R1099C	1.000	103	0%	96	51%	20	55%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Second domain of FERM,HMMSmart_SM00295
EXD2	55218	genome.wustl.edu	37	14	69701577	69701577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018199.2	+1	provisional	p.R168Q	1.000	87	0%	86	40.7%	18	44.4%	possibly_damaging(0.95)	tolerated(0.37)	neutral(0.413)	NULL
SLC39A9	55334	genome.wustl.edu	37	14	69922547	69922547	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018375.3	+1	validated	p.P219	0.997	205	0%	109	38.5%	27	62.9%	-	-	-	HMMPfam_Zip
ENSG00000175985	0	genome.wustl.edu	37	14	69994005	69994005	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000322564	+1	known	p.K386T	1.000	57	0%	25	40%	1	100%	benign(0.033)	tolerated(0.56)	neutral(0.008)	NULL
KIAA0247	9766	genome.wustl.edu	37	14	70175520	70175520	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014734.3	+1	validated	p.R195	0.996	87	0%	24	33.3%	15	33.3%	-	-	-	NULL
SMOC1	64093	genome.wustl.edu	37	14	70420220	70420220	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001034852.1	+1	validated	p.E117*	1.000	209	0%	62	53.2%	1	0%	-	-	-	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain
ADAM21	8747	genome.wustl.edu	37	14	70925117	70925117	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003813.2	+1	reviewed	p.N301H	0.001	129	0%	61	34.4%	0	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM20	8748	genome.wustl.edu	37	14	70990636	70990636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003814.4	-1	reviewed	p.S330Y	0.000	197	0.5%	23	43.5%	0	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM20	8748	genome.wustl.edu	37	14	70990646	70990646	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003814.4	-1	reviewed	p.E327*	0.000	211	0%	25	44%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
PCNX	22990	genome.wustl.edu	37	14	71568713	71568713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014982.2	+1	validated	p.F1866L	1.000	56	0%	50	48%	11	54.5%	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	HMMPfam_Pecanex_C
SIPA1L1	26037	genome.wustl.edu	37	14	72054863	72054863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015556.1	+1	provisional	p.E92*	1.000	192	0%	33	39.4%	16	50%	-	-	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72117181	72117181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015556.1	+1	provisional	p.R650W	1.000	182	0%	32	56.2%	19	68.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
SIPA1L1	26037	genome.wustl.edu	37	14	72197010	72197010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015556.1	+1	provisional	p.S1639L	0.995	137	0%	56	55.4%	49	55.1%	benign(0.265)	deleterious(0.01)	neutral(0.433)	NULL
RGS6	9628	genome.wustl.edu	37	14	72926360	72926360	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004296.4	+1	validated	p.S121	0.000	162	0%	50	52%	1	100%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
RGS6	9628	genome.wustl.edu	37	14	72961862	72961862	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004296.4	+1	validated	p.L286*	1.000	356	0%	71	47.9%	0	-	-	-	-	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
RGS6	9628	genome.wustl.edu	37	14	72976903	72976903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004296.4	+1	validated	p.S336Y	0.999	118	0%	91	36.3%	2	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
ZFYVE1	53349	genome.wustl.edu	37	14	73464710	73464710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021260.1	-1	reviewed	p.R266Q	1.000	136	0%	56	53.6%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000248570	0	genome.wustl.edu	37	14	73743189	73743189	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000504856	+1	novel	NULL	0.997	22	0%	42	54.8%	58	43.1%	-	-	-	-
ACOT2	10965	genome.wustl.edu	37	14	74042137	74042137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006821.4	+1	validated	p.V458M	0.977	92	0%	77	31.2%	23	34.7%	benign(0.117)	tolerated(0.07)	neutral(0.329)	HMMPfam_BAAT_C,superfamily_alpha/beta-Hydrolases
DNAL1	83544	genome.wustl.edu	37	14	74138285	74138285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031427.2	+1	validated	p.K83N	1.000	17	0%	74	32.4%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00365,superfamily_L domain-like
DNAL1	83544	genome.wustl.edu	37	14	74156179	74156179	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031427.2	+1	validated	p.E165*	1.000	124	0%	170	46.5%	9	22.2%	-	-	-	superfamily_L domain-like
PNMA1	9240	genome.wustl.edu	37	14	74179673	74179673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006029.4	-1	validated	p.I224V	0.218	14	0%	29	37.9%	22	45.4%	possibly_damaging(0.896)	tolerated(0.07)	deleterious(0.672)	NULL
PNMA1	9240	genome.wustl.edu	37	14	74180079	74180079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006029.4	-1	validated	p.W88C	1.000	38	0%	101	37.6%	17	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF410	57862	genome.wustl.edu	37	14	74387808	74387808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021188.1	+1	provisional	p.A377T	1.000	164	0%	51	56.9%	57	14%	unknown(0)	deleterious(0)	-	NULL
FAM161B	145483	genome.wustl.edu	37	14	74400974	74400974	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152445.1	-1	predicted	p.L643	0.003	232	0%	180	52.2%	7	57.1%	-	-	-	NULL
COQ6	51004	genome.wustl.edu	37	14	74425871	74425871	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182476.1	+1	validated	p.E243*	1.000	169	0%	119	49.6%	13	0%	-	-	-	HMMPfam_FAD_binding_3,superfamily_SSF51905
ABCD4	5826	genome.wustl.edu	37	14	74761882	74761882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005050.3	-1	reviewed	p.R230W	1.000	140	0%	57	47.4%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane_2,superfamily_ABC_TM_1
LTBP2	4053	genome.wustl.edu	37	14	74972894	74972894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000428.2	-1	reviewed	p.D1345G	1.000	58	0%	16	25%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
KIAA0317	9870	genome.wustl.edu	37	14	75142432	75142432	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039479.1	-1	validated	p.P350	0.052	122	0%	46	34.8%	17	70.5%	-	-	-	NULL
KIAA0317	9870	genome.wustl.edu	37	14	75150147	75150147	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039479.1	-1	validated	p.I111M	0.998	186	0%	34	26.5%	21	28.5%	benign(0.145)	deleterious(0.01)	neutral(0.418)	superfamily_E set domains,HMMPfam_Filamin
YLPM1	56252	genome.wustl.edu	37	14	75283969	75283969	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019589.2	+1	validated	p.E1979*	1.000	125	0%	97	39.2%	33	9%	-	-	-	NULL
YLPM1	56252	genome.wustl.edu	37	14	75283971	75283971	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019589.2	+1	validated	p.E1979	1.000	125	0%	97	47.4%	35	74.2%	-	-	-	NULL
YLPM1	56252	genome.wustl.edu	37	14	75287835	75287835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019589.2	+1	validated	p.E2036K	1.000	83	0%	56	44.6%	79	73.4%	benign(0.35)	deleterious(0.02)	deleterious(0.494)	NULL
PROX2	283571	genome.wustl.edu	37	14	75329502	75329502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080408.1	-1	provisional	p.L346I	0.011	62	0%	82	39%	0	-	benign(0.032)	deleterious(0.03)	neutral(0.366)	NULL
MLH3	27030	genome.wustl.edu	37	14	75483882	75483882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040108.1	-1	reviewed	p.L1422R	1.000	219	0%	79	50.6%	12	75%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
MLH3	27030	genome.wustl.edu	37	14	75514581	75514581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040108.1	-1	reviewed	p.R593I	0.000	195	0%	295	41.7%	7	28.5%	unknown(0)	tolerated(1)	-	NULL
MLH3	27030	genome.wustl.edu	37	14	75515244	75515244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040108.1	-1	reviewed	p.S372N	0.756	78	0%	147	40.8%	3	66.6%	unknown(0)	tolerated(0.1)	-	NULL
MLH3	27030	genome.wustl.edu	37	14	75515686	75515686	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040108.1	-1	reviewed	p.E225*	1.000	35	0%	54	38.9%	1	100%	-	-	-	HMMPfam_DNA_mis_repair,superfamily_Ribosomal protein S5 domain 2-like
TMED10	10972	genome.wustl.edu	37	14	75602547	75602547	+	Nonsense_Mutation	SNP	G	G	A	rs17103066	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006827.5	-1	reviewed	p.R152*	0.901	170	0%	145	52.4%	290	24.1%	-	-	-	HMMPfam_EMP24_GP25L
FLVCR2	55640	genome.wustl.edu	37	14	76101261	76101261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017791.2	+1	validated	p.E343D	1.000	138	0%	61	16.4%	1	0%	possibly_damaging(0.653)	deleterious(0.02)	deleterious(0.613)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
C14orf118	55668	genome.wustl.edu	37	14	76668171	76668171	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017926.2	+1	validated	p.E476*	0.988	114	0%	20	65%	6	33.3%	-	-	-	NULL
ESRRB	2103	genome.wustl.edu	37	14	76948464	76948464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004452.3	+1	reviewed	p.K207T	1.000	153	0%	55	36.4%	1	0%	possibly_damaging(0.49)	tolerated(0.3)	neutral(0.192)	superfamily_Str_ncl_receptor
ZDHHC22	283576	genome.wustl.edu	37	14	77605856	77605856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174976.2	-1	validated	p.L76M	0.999	24	0%	16	68.8%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
TMEM63C	57156	genome.wustl.edu	37	14	77685893	77685893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020431.2	+1	validated	p.R68H	1.000	156	0%	63	42.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POMT2	29954	genome.wustl.edu	37	14	77751949	77751949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013382.5	-1	reviewed	p.F453L	1.000	67	0%	52	63.5%	13	38.4%	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
SAMD15	161394	genome.wustl.edu	37	14	77844428	77844428	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010860.1	+1	provisional	p.E223*	0.012	42	0%	44	43.2%	3	66.6%	-	-	-	NULL
SAMD15	161394	genome.wustl.edu	37	14	77845214	77845214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010860.1	+1	provisional	p.L485V	0.000	217	0%	161	43.5%	8	37.5%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
SNW1	22938	genome.wustl.edu	37	14	78187157	78187157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012245.2	-1	reviewed	p.R382K	1.000	307	0%	121	52.9%	107	42.9%	benign(0.006)	tolerated(0.24)	neutral(0.037)	NULL
NRXN3	9369	genome.wustl.edu	37	14	80328255	80328255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004796.4	+1	reviewed	p.S1045L	1.000	118	0%	70	44.3%	15	60%	benign(0.012)	deleterious(0.03)	neutral(0.365)	NULL
DIO2	1734	genome.wustl.edu	37	14	80669060	80669060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007023.2	-1	reviewed	p.R301I	1.000	132	0%	74	45.9%	3	0%	possibly_damaging(0.923)	deleterious(0.03)	deleterious(0.737)	NULL
DIO2	1734	genome.wustl.edu	37	14	80669258	80669258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007023.2	-1	reviewed	p.L235R	0.996	120	0%	61	59%	1	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_T4_deiodinase
CEP128	145508	genome.wustl.edu	37	14	81304597	81304597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152446.3	-1	validated	p.R292Q	0.998	171	0%	139	45.3%	12	58.3%	probably_damaging(0.963)	tolerated(0.42)	neutral(0.420)	NULL
CEP128	145508	genome.wustl.edu	37	14	81307063	81307063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152446.3	-1	validated	p.K271I	0.998	418	0%	288	46.9%	7	14.2%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
CEP128	145508	genome.wustl.edu	37	14	81371200	81371200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152446.3	-1	validated	p.R146I	0.962	486	0%	116	42.2%	2	50%	possibly_damaging(0.901)	tolerated(0.05)	deleterious(0.702)	NULL
CEP128	145508	genome.wustl.edu	37	14	81371215	81371215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152446.3	-1	validated	p.K141T	0.128	521	0%	108	46.3%	1	100%	possibly_damaging(0.907)	tolerated(0.15)	deleterious(0.601)	NULL
TSHR	7253	genome.wustl.edu	37	14	81422084	81422084	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000369.2	+1	reviewed	p.G20	0.000	108	0%	25	56%	0	-	-	-	-	NULL
TSHR	7253	genome.wustl.edu	37	14	81554299	81554299	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000369.2	+1	reviewed	p.E107*	1.000	139	0%	85	42.4%	0	-	-	-	-	superfamily_L domain-like
GALC	2581	genome.wustl.edu	37	14	88401162	88401162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000153.2	-1	reviewed	p.F658V	0.022	266	0%	28	46.4%	6	16.6%	benign(0.03)	tolerated(0.49)	neutral(0.012)	HMMPfam_Glyco_hydro_59
PTPN21	11099	genome.wustl.edu	37	14	88935997	88935997	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007039.3	-1	reviewed	p.K1027	1.000	123	0%	68	48.5%	7	42.8%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPN21	11099	genome.wustl.edu	37	14	88974340	88974340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007039.3	-1	reviewed	p.K125N	1.000	277	0%	129	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
EML5	161436	genome.wustl.edu	37	14	89084596	89084596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183387.2	-1	validated	p.R1873I	1.000	218	0%	111	47.7%	0	-	benign(0.026)	tolerated(0.19)	neutral(0.051)	superfamily_WD40 repeat-like
EML5	161436	genome.wustl.edu	37	14	89130878	89130878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183387.2	-1	validated	p.G1123V	1.000	120	0%	90	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
TDP1	55775	genome.wustl.edu	37	14	90451002	90451002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008744.1	+1	reviewed	p.H343N	0.990	180	0%	91	49.5%	20	50%	benign(0.008)	deleterious(0.04)	neutral(0.349)	HMMPfam_Tyr-DNA_phospho,superfamily_SSF56024
KCNK13	56659	genome.wustl.edu	37	14	90651281	90651281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022054.2	+1	reviewed	p.F387L	1.000	7	0.000	8	0.750	0	-	benign(0.072)	tolerated(0.34)	neutral(0.028)	NULL
RPS6KA5	9252	genome.wustl.edu	37	14	91340000	91340000	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004755.2	-1	validated	p.H712	0.996	215	0%	92	52.2%	2	50%	-	-	-	NULL
CATSPERB	79820	genome.wustl.edu	37	14	92139327	92139327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024764.2	-1	validated	p.L338I	0.000	57	0%	57	49.1%	0	-	possibly_damaging(0.653)	tolerated(0.28)	neutral(0.261)	NULL
TC2N	123036	genome.wustl.edu	37	14	92280104	92280104	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128595.1	-1	validated	p.E4*	1.000	182	0%	47	42.6%	12	33.3%	-	-	-	NULL
FBLN5	10516	genome.wustl.edu	37	14	92353634	92353634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006329.3	-1	reviewed	p.E214D	0.999	202	0%	64	46.9%	23	4.3%	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
TRIP11	9321	genome.wustl.edu	37	14	92466409	92466409	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004239.3	-1	reviewed	p.S1534*	1.000	272	0%	141	44.7%	10	10%	-	-	-	NULL
ATXN3	4287	genome.wustl.edu	37	14	92548797	92548797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004993.5	-1	reviewed	p.D208N	1.000	136	0%	114	43.9%	14	21.4%	possibly_damaging(0.439)	tolerated(0.06)	neutral(0.466)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92608529	92608529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017437.1	+1	validated	p.R228Q	1.000	468	0%	214	47.7%	46	50%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	superfamily_Metallo-hydrolase/oxidoreductase
SLC24A4	123041	genome.wustl.edu	37	14	92920304	92920304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153646.2	+1	validated	p.S297F	1.000	172	0%	85	42.4%	0	-	possibly_damaging(0.822)	deleterious(0.05)	deleterious(0.656)	NULL
RIN3	79890	genome.wustl.edu	37	14	93022224	93022224	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024832.3	+1	validated	p.K58T	0.001	59	0%	47	59.6%	4	75%	unknown(0)	tolerated(0.15)	-	superfamily_SH2 domain
MOAP1	64112	genome.wustl.edu	37	14	93649738	93649738	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022151.4	-1	reviewed	p.A284P	0.210	59	0%	90	43.3%	86	48.8%	probably_damaging(0.99)	tolerated(0.19)	deleterious(0.491)	NULL
C14orf142	84520	genome.wustl.edu	37	14	93670040	93670040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032490.4	-1	validated	p.P99L	0.036	386	0%	470	43.4%	15	33.3%	possibly_damaging(0.913)	tolerated(0.08)	deleterious(0.664)	NULL
UNC79	57578	genome.wustl.edu	37	14	93943946	93943946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000393153	+1	known	p.P164H	1.000	576	0%	60	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UNC79	57578	genome.wustl.edu	37	14	94048629	94048629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020818.3	+1	validated	p.E737D	1.000	129	0%	39	48.7%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
UNC79	57578	genome.wustl.edu	37	14	94052959	94052959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020818.3	+1	validated	p.E764K	1.000	87	0%	127	15.7%	0	-	benign(0.141)	tolerated(0.09)	neutral(0.308)	NULL
UNC79	57578	genome.wustl.edu	37	14	94088677	94088677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020818.3	+1	validated	p.D1523N	0.813	129	0%	37	51.4%	0	-	possibly_damaging(0.444)	tolerated(0.4)	neutral(0.161)	NULL
UNC79	57578	genome.wustl.edu	37	14	94139711	94139711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020818.3	+1	validated	p.F2079L	1.000	319	0%	198	41.4%	0	-	benign(0.019)	tolerated(0.68)	neutral(0.003)	NULL
DDX24	57062	genome.wustl.edu	37	14	94524236	94524236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020414.3	-1	reviewed	p.L641I	1.000	119	0%	38	47.4%	94	34%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
PPP4R4	57718	genome.wustl.edu	37	14	94700961	94700961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_058237.1	+1	reviewed	p.R229Q	1.000	343	0%	183	43.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
PPP4R4	57718	genome.wustl.edu	37	14	94732160	94732160	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_058237.1	+1	reviewed	p.R772*	1.000	81	0%	66	53%	0	-	-	-	-	NULL
SERPINA10	51156	genome.wustl.edu	37	14	94756237	94756237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100607.1	-1	reviewed	p.L232I	0.039	183	0%	172	36%	0	-	benign(0.047)	deleterious(0)	neutral(0.448)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA6	866	genome.wustl.edu	37	14	94770827	94770827	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001756.3	-1	reviewed	p.P382	1.000	230	0%	85	43.5%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins
SERPINA11	256394	genome.wustl.edu	37	14	94912889	94912889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080451.1	-1	provisional	p.F232L	0.063	380	0%	66	45.5%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
DICER1	23405	genome.wustl.edu	37	14	95562746	95562746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030621.3	-1	reviewed	p.S1504N	1.000	132	0%	61	44.3%	9	77.7%	probably_damaging(0.978)	tolerated(0.08)	deleterious(0.720)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
CLMN	79789	genome.wustl.edu	37	14	95670039	95670039	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024734.3	-1	validated	p.A549	0.000	159	0%	127	40.2%	6	16.6%	-	-	-	NULL
BDKRB2	624	genome.wustl.edu	37	14	96707034	96707034	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000623.3	+1	reviewed	p.W123*	1.000	84	0%	29	41.4%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BDKRB2	624	genome.wustl.edu	37	14	96707678	96707678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000623.3	+1	reviewed	p.R338H	1.000	89	0%	34	41.2%	3	66.6%	benign(0.006)	tolerated(0.25)	neutral(0.037)	superfamily_Family A G protein-coupled receptor-like
BDKRB1	623	genome.wustl.edu	37	14	96730864	96730864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000710.2	+1	reviewed	p.R282Q	0.008	100	0%	105	42.9%	2	0%	benign(0.021)	tolerated(0.65)	neutral(0.004)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BDKRB1	623	genome.wustl.edu	37	14	96730958	96730958	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000710.2	+1	reviewed	p.V313	0.988	47	0%	66	53%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ATG2B	55102	genome.wustl.edu	37	14	96769458	96769458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018036.5	-1	validated	p.M1659I	1.000	226	0%	124	34.7%	6	33.3%	benign(0.002)	tolerated(1)	-	NULL
ATG2B	55102	genome.wustl.edu	37	14	96790312	96790312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018036.5	-1	validated	p.D821N	0.968	143	0%	70	47.1%	2	0%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96797850	96797850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018036.5	-1	validated	p.Q531H	0.687	103	0%	67	52.2%	0	-	benign(0.029)	tolerated(0.26)	neutral(0.036)	NULL
ATG2B	55102	genome.wustl.edu	37	14	96800138	96800138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018036.5	-1	validated	p.R365Q	1.000	247	0%	87	52.9%	4	75%	probably_damaging(0.985)	tolerated(0.33)	neutral(0.456)	NULL
AK7	122481	genome.wustl.edu	37	14	96924488	96924488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152327.2	+1	validated	p.E432D	0.951	104	0%	66	50%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PAPOLA	10914	genome.wustl.edu	37	14	96991725	96991725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032632.3	+1	validated	p.K110Q	1.000	88	0%	116	51.7%	120	35.8%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_NTP_transf_2,HMMPfam_PAP_central,superfamily_Nucleotidyltransferase
PAPOLA	10914	genome.wustl.edu	37	14	96998682	96998682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032632.3	+1	validated	p.D208N	1.000	128	0%	127	41.7%	94	44.6%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_PAP_central,superfamily_Nucleotidyltransferase
VRK1	7443	genome.wustl.edu	37	14	97327070	97327070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003384.2	+1	reviewed	p.K356E	0.986	287	0%	107	41.1%	64	48.4%	possibly_damaging(0.881)	tolerated(0.34)	neutral(0.367)	NULL
CYP46A1	10858	genome.wustl.edu	37	14	100157469	100157469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380228	+1	known	p.A14V	1.000	277	0%	574	43.9%	0	-	-	-	-	NULL
LOC100288131	100288131	genome.wustl.edu	37	14	101194904	101194904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343290.1	-1	model	p.L74V	0.004	19	0%	25	36%	0	-	-	-	-	NULL
RTL1	388015	genome.wustl.edu	37	14	101348660	101348660	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134888.2	-1	reviewed	p.F822	0.980	55	0%	52	38.5%	0	-	-	-	-	superfamily_DNA/RNA polymerases
RTL1	388015	genome.wustl.edu	37	14	101349834	101349834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134888.2	-1	reviewed	p.S431L	0.995	18	0%	24	100%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	superfamily_Acid proteases
RTL1	388015	genome.wustl.edu	37	14	101350150	101350150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134888.2	-1	reviewed	p.L326V	1.000	49	0%	50	52%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Retrotrans_gag
MIR1185-1	100302157	genome.wustl.edu	37	14	101509364	101509364	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000408598	+1	known	NULL	0.518	94	0%	245	38%	0	-	-	-	-	-
MIR487B	664616	genome.wustl.edu	37	14	101512845	101512845	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385021	+1	known	NULL	1.000	154	0%	268	47%	0	-	-	-	-	-
MIR485	574436	genome.wustl.edu	37	14	101521775	101521775	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385292	+1	known	NULL	1.000	215	0.5%	86	43%	0	-	-	-	-	-
MIR656	724026	genome.wustl.edu	37	14	101533134	101533134	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385224	+1	known	NULL	0.001	175	0%	140	35%	0	-	-	-	-	-
DYNC1H1	1778	genome.wustl.edu	37	14	102452337	102452337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001376.4	+1	reviewed	p.F592S	1.000	78	0%	37	51.4%	21	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N1
RCOR1	23186	genome.wustl.edu	37	14	103180856	103180856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015156.2	+1	validated	p.L316I	1.000	160	0%	131	12.2%	17	5.8%	possibly_damaging(0.627)	tolerated(0.71)	neutral(0.220)	NULL
TRAF3	7187	genome.wustl.edu	37	14	103369615	103369615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003300.2	+1	reviewed	p.E328D	1.000	92	0%	115	50.4%	20	60%	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
CDC42BPB	9578	genome.wustl.edu	37	14	103436544	103436544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006035.3	-1	reviewed	p.R647C	0.996	92	1.1%	36	41.7%	70	54.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDC42BPB	9578	genome.wustl.edu	37	14	103478522	103478522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006035.3	-1	reviewed	p.K60T	1.000	169	0%	300	44%	15	73.3%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	superfamily_Kinase_like
EIF5	1983	genome.wustl.edu	37	14	103806788	103806788	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001969.3	+1	validated	p.E366*	1.000	64	0%	93	36.6%	132	7.5%	-	-	-	HMMPfam_W2,HMMSmart_SM00515,superfamily_ARM repeat
MARK3	4140	genome.wustl.edu	37	14	103946820	103946820	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128918.1	+1	validated	p.E527*	1.000	69	0%	102	49%	76	21%	-	-	-	NULL
C14orf2	9556	genome.wustl.edu	37	14	104380315	104380315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127393.1	-1	validated	p.R61I	1.000	79	0%	160	43.1%	226	11.9%	-	-	-	HMMPfam_Mit_proteolip
TDRD9	122402	genome.wustl.edu	37	14	104488514	104488514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153046.2	+1	validated	p.R818L	0.723	98	0%	26	76.9%	0	-	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	NULL
ADSSL1	122622	genome.wustl.edu	37	14	105212696	105212696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199165.1	+1	validated	p.F475S	1.000	30	0%	23	34.8%	2	0%	possibly_damaging(0.916)	tolerated(0.08)	deleterious(0.667)	HMMPfam_Adenylsucc_synt,HMMSmart_Adenylsucc_synt,superfamily_SSF52540
AHNAK2	113146	genome.wustl.edu	37	14	105404722	105404722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138420.2	-1	validated	p.K5689R	0.000	45	0%	117	42.7%	9	33.3%	possibly_damaging(0.662)	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105407408	105407408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138420.2	-1	validated	p.K4794Q	0.002	25	0%	87	48.3%	1	100%	possibly_damaging(0.896)	tolerated(0.55)	neutral(0.360)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105411358	105411358	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138420.2	-1	validated	p.K3477T	1.000	76	0%	160	45%	2	100%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105418764	105418764	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138420.2	-1	validated	p.F1008	0.009	67	0%	173	52.6%	0	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105421098	105421098	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138420.2	-1	validated	p.T230	0.000	17	0%	46	41.3%	1	0%	-	-	-	NULL
GPR132	29933	genome.wustl.edu	37	14	105517402	105517402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013345.2	-1	reviewed	p.T358A	0.000	105	0%	89	39.3%	3	0%	benign(0.244)	tolerated(0.14)	neutral(0.274)	NULL
IGHG4	3503	genome.wustl.edu	37	14	106091246	106091246	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390543	-1	known	p.I216	0.875	1013	0.1%	339	25.1%	39	0%	-	-	-	superfamily_SSF48726
IGHG2	3501	genome.wustl.edu	37	14	106109615	106109615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390545	-1	known	p.F302L	0.001	788	0%	206	26.7%	1116	0%	possibly_damaging(0.74)	deleterious(0)	deleterious(0.716)	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHG1	3500	genome.wustl.edu	37	14	106208713	106208713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390548	-1	known	p.S102Y	0.000	518	0%	323	35.3%	1169	0%	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_Immunoglobulin
IGHG3	3502	genome.wustl.edu	37	14	106236665	106236665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390550	-1	known	p.L134I	0.013	1226	0%	511	23.1%	595	0%	unknown(0)	tolerated(0.08)	-	NULL
IGHV1-2	28474	genome.wustl.edu	37	14	106452853	106452853	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390594	-1	known	p.R57*	0.931	165	0%	159	45.3%	22	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV1-8	28472	genome.wustl.edu	37	14	106539271	106539271	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390599	-1	known	p.I53	0.000	450	0%	88	43.2%	7	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV1-8	28472	genome.wustl.edu	37	14	106539313	106539313	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390599	-1	known	p.V39	0.998	321	0%	70	54.3%	12	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV3-13	28449	genome.wustl.edu	37	14	106586180	106586180	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390602	-1	known	p.N102S	0.304	66	1.5%	52	25%	0	-	benign(0.009)	tolerated(0.43)	neutral(0.014)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-16	28447	genome.wustl.edu	37	14	106622116	106622116	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390604	-1	known	p.A43	0.358	318	0%	130	38.5%	8	0%	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV1-18	28468	genome.wustl.edu	37	14	106641974	106641974	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390605	-1	known	p.L8	0.036	211	0%	119	55.5%	25	0%	-	-	-	NULL
IGHV@	3509	genome.wustl.edu	37	14	106725435	106725435	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390609	-1	known	p.L39	0.417	322	0%	140	18.6%	60	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV3-64	28414	genome.wustl.edu	37	14	107113868	107113868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000454421	-1	known	p.G76D	0.000	174	0%	128	43.8%	0	-	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV1-69	28461	genome.wustl.edu	37	14	107169965	107169965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390633	-1	known	p.R106I	0.941	306	0%	82	31.7%	13	0%	benign(0.317)	deleterious(0.02)	deleterious(0.482)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000215407	0	genome.wustl.edu	37	15	20457279	20457279	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000400226	-1	known	p.E204*	1.000	95	0%	93	19.4%	4	0%	-	-	-	HMMPfam_BRO1
GOLGA6L6	727832	genome.wustl.edu	37	15	20740394	20740394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145004.1	-1	inferred	p.K452N	0.984	425	0%	253	5.9%	0	-	unknown(0)	tolerated(0.11)	-	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22835915	22835915	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102610.1	+1	validated	e2-1	1.000	65	0%	232	44.4%	1	0%	-	-	-	-
CYFIP1	23191	genome.wustl.edu	37	15	22929782	22929782	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014608.2	+1	validated	p.F152	0.993	68	0%	40	57.5%	49	26.5%	-	-	-	HMMPfam_FragX_IP
CYFIP1	23191	genome.wustl.edu	37	15	22935938	22935938	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014608.2	+1	validated	p.L292V	1.000	305	0%	323	46.4%	42	64.2%	possibly_damaging(0.867)	deleterious(0.01)	deleterious(0.742)	HMMPfam_FragX_IP
CYFIP1	23191	genome.wustl.edu	37	15	22956552	22956552	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014608.2	+1	validated	p.R597*	1.000	43	0%	71	39.4%	45	6.6%	-	-	-	HMMPfam_FragX_IP
LOC283683	283683	genome.wustl.edu	37	15	23142589	23142589	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_015696.3	-1	model	NULL	1.000	108	0%	42	33.3%	0	-	-	-	-	-
LOC283685	283685	genome.wustl.edu	37	15	23686466	23686466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343322.1	-1	model	p.R348W	0.002	32	0%	27	55.6%	0	-	unknown(0)	deleterious(0)	-	NULL
LOC100289059	100289059	genome.wustl.edu	37	15	25414716	25414716	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343317.1	-1	model	p.P139	0.003	6	0.000	13	0.385	0	-	-	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25616011	25616011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000462.2	-1	reviewed	p.R440Q	0.996	71	1.4%	50	46%	26	34.6%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
GABRB3	2562	genome.wustl.edu	37	15	26793203	26793203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000814.4	-1	reviewed	p.D387N	0.994	142	0%	33	54.5%	0	-	possibly_damaging(0.736)	tolerated(0.19)	neutral(0.319)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRB3	2562	genome.wustl.edu	37	15	26806109	26806109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000814.4	-1	reviewed	p.K350N	1.000	605	0%	198	38.9%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRG3	2567	genome.wustl.edu	37	15	27772763	27772763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033223.4	+1	validated	p.K350N	1.000	312	0%	68	47.1%	0	-	benign(0.003)	deleterious(0.05)	neutral(0.345)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
OCA2	4948	genome.wustl.edu	37	15	28196959	28196959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000275.2	-1	reviewed	p.S641L	1.000	259	0%	165	45.5%	0	-	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	HMMPfam_CitMHS
HERC2	8924	genome.wustl.edu	37	15	28362215	28362215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004667.4	-1	reviewed	p.S4453L	1.000	47	0%	21	52.4%	28	42.8%	benign(0.006)	tolerated(0.51)	neutral(0.009)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC2	8924	genome.wustl.edu	37	15	28380658	28380658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004667.4	-1	reviewed	p.A4066T	1.000	142	0%	123	37.4%	15	46.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28386977	28386977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004667.4	-1	reviewed	p.R3906C	0.915	129	0%	131	29%	8	37.5%	benign(0.167)	tolerated(0.05)	neutral(0.360)	NULL
HERC2	8924	genome.wustl.edu	37	15	28391470	28391470	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004667.4	-1	reviewed	p.E3641*	1.000	150	0%	35	48.6%	6	50%	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28459906	28459906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004667.4	-1	reviewed	p.D2085N	1.000	110	0%	40	45%	2	100%	benign(0.097)	tolerated(0.85)	neutral(0.008)	NULL
HERC2	8924	genome.wustl.edu	37	15	28474649	28474649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004667.4	-1	reviewed	p.F1693L	1.000	254	0%	213	43.7%	4	25%	benign(0)	tolerated(1)	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28482250	28482250	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004667.4	-1	reviewed	p.E1288*	1.000	230	0%	173	31.2%	6	16.6%	-	-	-	superfamily_Cytochrome b5-like heme/steroid binding domain
TJP1	7082	genome.wustl.edu	37	15	30025512	30025512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003257.3	-1	validated	p.R508C	1.000	136	0%	112	37.5%	44	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SH3-domain,superfamily_PDZ domain-like
TJP1	7082	genome.wustl.edu	37	15	30034920	30034920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003257.3	-1	validated	p.A359V	0.004	362	0%	264	42%	33	60.6%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
FAN1	22909	genome.wustl.edu	37	15	31212806	31212806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014967.4	+1	reviewed	p.R668G	0.351	324	0%	306	40.8%	14	57.1%	possibly_damaging(0.748)	deleterious(0.01)	deleterious(0.680)	NULL
TRPM1	4308	genome.wustl.edu	37	15	31294517	31294517	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002420.4	-1	reviewed	p.F1440	0.313	229	0%	110	48.2%	0	-	-	-	-	NULL
OTUD7A	161725	genome.wustl.edu	37	15	31818566	31818566	+	Silent	SNP	G	G	A	rs184361722	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130901.1	-1	provisional	p.G286	0.947	29	0%	16	50%	0	-	-	-	-	HMMPfam_OTU
OTUD7A	161725	genome.wustl.edu	37	15	31823009	31823009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130901.1	-1	provisional	p.R185C	1.000	111	0%	51	43.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OTUD7A	161725	genome.wustl.edu	37	15	31851206	31851206	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130901.1	-1	provisional	p.I172	0.969	128	0%	28	39.3%	0	-	-	-	-	NULL
OTUD7A	161725	genome.wustl.edu	37	15	31947344	31947344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130901.1	-1	provisional	p.R36W	1.000	157	0%	28	50%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_UBA-like
ARHGAP11A	9824	genome.wustl.edu	37	15	32920998	32920998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014783.3	+1	validated	p.R311I	0.658	61	0%	66	34.8%	15	20%	benign(0.392)	deleterious(0.01)	deleterious(0.531)	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32926192	32926192	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014783.3	+1	validated	p.R432*	1.000	76	0%	53	50.9%	17	17.6%	-	-	-	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32929034	32929034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014783.3	+1	validated	p.T687I	0.000	16	0%	23	47.8%	14	85.7%	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
ARHGAP11A	9824	genome.wustl.edu	37	15	32929125	32929125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014783.3	+1	validated	p.F717L	0.000	15	0%	22	27.3%	24	62.5%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
FMN1	342184	genome.wustl.edu	37	15	33261642	33261642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103184.2	-1	validated	p.E531K	1.000	301	0%	110	50%	2	50%	unknown(0)	deleterious(0)	-	NULL
FMN1	342184	genome.wustl.edu	37	15	33359542	33359542	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103184.2	-1	validated	p.E182*	0.100	68	1.5%	61	44.3%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33876627	33876627	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001036.3	+1	validated	p.C535	0.994	146	0%	46	52.2%	0	-	-	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	34061322	34061322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001036.3	+1	validated	p.S2922Y	1.000	183	0%	125	48%	0	-	possibly_damaging(0.849)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34080594	34080594	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001036.3	+1	validated	p.F3255	0.741	42	0%	32	56.2%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34123273	34123273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001036.3	+1	validated	p.S3815Y	1.000	180	0%	138	42.8%	0	-	probably_damaging(0.996)	-	-	HMMPfam_RIH_assoc
CHRM5	1133	genome.wustl.edu	37	15	34355008	34355008	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012125.3	+1	validated	p.V30	0.997	224	0%	120	39.2%	0	-	-	-	-	superfamily_SSF81321
C15orf24	56851	genome.wustl.edu	37	15	34388111	34388111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020154.2	-1	validated	p.S114L	1.000	126	0%	164	29.3%	93	48.3%	probably_damaging(0.955)	deleterious(0.04)	deleterious(0.748)	HMMPfam_DUF2012
PGBD4	161779	genome.wustl.edu	37	15	34395336	34395336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152595.4	+1	validated	p.R202W	1.000	157	0%	231	45.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C15orf55	256646	genome.wustl.edu	37	15	34646896	34646896	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175741.1	+1	validated	p.I414N	0.988	165	0%	148	44.6%	0	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
GOLGA8A	23015	genome.wustl.edu	37	15	34678872	34678872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181077.3	-1	reviewed	p.S80L	0.988	556	0%	438	21%	25	24%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GJD2	57369	genome.wustl.edu	37	15	35044885	35044885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020660.1	-1	provisional	p.L254I	1.000	142	0%	107	42.1%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Connexin_CCC
ACTC1	70	genome.wustl.edu	37	15	35084451	35084451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005159.4	-1	reviewed	p.E216D	1.000	98	0%	69	42%	0	-	benign(0.071)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTC1	70	genome.wustl.edu	37	15	35084465	35084465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005159.4	-1	reviewed	p.R212C	1.000	88	0%	67	53.7%	0	-	possibly_damaging(0.905)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
AQR	9716	genome.wustl.edu	37	15	35166040	35166040	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014691.2	-1	validated	p.Y1196H	1.000	87	0%	35	42.9%	36	44.4%	benign(0.072)	tolerated(0.31)	neutral(0.032)	NULL
AQR	9716	genome.wustl.edu	37	15	35176777	35176777	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014691.2	-1	validated	p.E992D	1.000	211	0%	114	50.9%	27	33.3%	benign(0.001)	tolerated(0.61)	neutral(0.004)	superfamily_SSF52540
ZNF770	54989	genome.wustl.edu	37	15	35274404	35274404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014106.2	-1	validated	p.S411Y	0.676	36	0%	107	40.2%	20	35%	probably_damaging(0.995)	tolerated(0.22)	deleterious(0.499)	NULL
TMCO5A	145942	genome.wustl.edu	37	15	38228630	38228630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152453.2	+1	provisional	p.L36I	0.986	192	0%	47	51.1%	0	-	possibly_damaging(0.585)	tolerated(0.14)	neutral(0.451)	NULL
TMCO5A	145942	genome.wustl.edu	37	15	38235576	38235576	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152453.2	+1	provisional	p.E202*	0.000	368	0%	69	39.1%	0	-	-	-	-	NULL
FAM98B	283742	genome.wustl.edu	37	15	38757579	38757579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173611.2	+1	validated	p.K109N	0.047	85	0%	38	44.7%	33	36.3%	benign(0.282)	tolerated(0.66)	neutral(0.089)	HMMPfam_DUF2465
C15orf54	400360	genome.wustl.edu	37	15	39544831	39544831	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207445.2	+1	validated	p.I165	0.000	41	0.000	6	0.667	0	-	-	-	-	NULL
FSIP1	161835	genome.wustl.edu	37	15	40030355	40030355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152597.4	-1	validated	p.K276N	0.996	311	0%	169	45.6%	1	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
EIF2AK4	440275	genome.wustl.edu	37	15	40300268	40300268	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013703.2	+1	validated	p.R1150	1.000	272	0%	102	40.2%	24	0%	-	-	-	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases
EIF2AK4	440275	genome.wustl.edu	37	15	40303518	40303518	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013703.2	+1	validated	p.F1244V	1.000	307	0%	203	49.3%	12	16.6%	possibly_damaging(0.93)	tolerated(0.48)	neutral(0.387)	superfamily_Class II aaRS and biotin synthetases
PAK6	56924	genome.wustl.edu	37	15	40565763	40565763	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128628.1	+1	reviewed	p.S543	0.019	25	0%	69	53.6%	14	64.2%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C15orf52	388115	genome.wustl.edu	37	15	40627456	40627456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207380.2	-1	validated	p.P503L	0.000	8	0.000	17	0.294	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
C15orf23	90417	genome.wustl.edu	37	15	40675470	40675470	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033286.3	+1	validated	p.K84T	0.323	52	0%	36	36.1%	25	60%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
IVD	3712	genome.wustl.edu	37	15	40702993	40702993	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000473112	+1	known	p.R71Q	1.000	47	2.1%	25	64%	21	66.6%	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
RPUSD2	27079	genome.wustl.edu	37	15	40866020	40866020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152260.1	+1	provisional	p.R400W	0.978	55	0%	24	33.3%	13	69.2%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_PsdUridine_synth_cat_dom
CASC5	57082	genome.wustl.edu	37	15	40917515	40917515	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_170589.3	+1	validated	p.E1711*	0.995	59	0%	77	46.8%	8	0%	-	-	-	NULL
EXD1	161829	genome.wustl.edu	37	15	41476523	41476523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152596.2	-1	provisional	p.S384Y	0.004	164	0%	190	47.9%	0	-	benign(0.267)	deleterious(0)	deleterious(0.473)	NULL
EXD1	161829	genome.wustl.edu	37	15	41488141	41488141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152596.2	-1	provisional	p.R152I	0.998	87	0%	150	49.3%	0	-	possibly_damaging(0.948)	deleterious(0.05)	deleterious(0.736)	HMMPfam_3_5_exonuc,HMMSmart_SM00474,superfamily_Ribonuclease H-like
LTK	4058	genome.wustl.edu	37	15	41796560	41796560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002344.5	-1	reviewed	p.R776C	0.678	27	0%	34	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MGA	23269	genome.wustl.edu	37	15	42035217	42035217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080541.2	+1	validated	p.T1736A	1.000	422	0%	222	45.9%	4	50%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
SPTBN5	51332	genome.wustl.edu	37	15	42143119	42143119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016642.2	-1	validated	p.E3583D	0.001	22	0%	21	47.6%	2	50%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SPTBN5	51332	genome.wustl.edu	37	15	42144859	42144859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016642.2	-1	validated	p.E3439D	0.901	38	0%	37	37.8%	3	0%	probably_damaging(0.966)	tolerated(0.12)	deleterious(0.668)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PLA2G4F	255189	genome.wustl.edu	37	15	42442640	42442640	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213600.3	-1	validated	p.G272	0.000	26	0%	17	41.2%	3	33.3%	-	-	-	NULL
PLA2G4F	255189	genome.wustl.edu	37	15	42447765	42447765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213600.3	-1	validated	p.D45A	1.000	194	0%	80	37.5%	1	0%	possibly_damaging(0.923)	tolerated(0.69)	neutral(0.374)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
VPS39	23339	genome.wustl.edu	37	15	42458405	42458405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015289.2	-1	reviewed	p.F544L	1.000	122	0%	85	12.9%	26	7.6%	benign(0.067)	tolerated(0.33)	neutral(0.029)	HMMPfam_Vps39_1
VPS39	23339	genome.wustl.edu	37	15	42466034	42466034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015289.2	-1	reviewed	p.S326F	1.000	178	0%	196	43.4%	17	35.2%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
MIR627	693212	genome.wustl.edu	37	15	42491772	42491772	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384979	-1	known	NULL	0.000	83	0%	110	45.5%	0	-	-	-	-	-
ZFP106	64397	genome.wustl.edu	37	15	42731777	42731777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022473.1	-1	provisional	p.S1310Y	1.000	87	0%	57	84.2%	7	100%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
STARD9	57519	genome.wustl.edu	37	15	42930955	42930955	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001129482.3	+1	model	p.K168N	0.998	169	0%	135	52.6%	1	100%	benign(0.021)	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
STARD9	57519	genome.wustl.edu	37	15	42957985	42957985	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001129482.3	+1	model	e15-1	1.000	285	0%	157	35.7%	0	-	benign(0.243)	-	-	-
STARD9	57519	genome.wustl.edu	37	15	42977059	42977059	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001129482.3	+1	model	p.E1047*	0.997	39	0%	59	42.4%	1	100%	-	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42978609	42978609	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001129482.3	+1	model	p.E1525	0.010	74	0%	121	43.8%	0	-	-	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42978614	42978614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001129482.3	+1	model	p.A1527V	0.000	67	0%	121	47.9%	0	-	benign(0.006)	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43282296	43282296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174916.2	-1	reviewed	p.F1260L	0.000	66	0%	91	45.1%	2	100%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
UBR1	197131	genome.wustl.edu	37	15	43308052	43308052	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174916.2	-1	reviewed	p.E1015*	1.000	114	0%	235	36.6%	7	0%	-	-	-	NULL
TGM5	9333	genome.wustl.edu	37	15	43545745	43545745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201631.3	-1	reviewed	p.R215W	0.589	167	0%	43	39.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cysteine proteinases
ADAL	161823	genome.wustl.edu	37	15	43632484	43632484	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012969.2	+1	validated	p.E93*	1.000	162	0%	108	38%	6	0%	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
TP53BP1	7158	genome.wustl.edu	37	15	43766960	43766960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001141980.1	-1	validated	p.S364Y	0.998	118	0%	75	34.7%	13	61.5%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814895	43814895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002373.5	+1	reviewed	p.K408N	1.000	67	0%	162	45.7%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPIP5K1	9677	genome.wustl.edu	37	15	43826978	43826978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130858.1	-1	validated	p.A1399V	0.677	73	0%	59	57.6%	13	46.1%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
CATSPER2	117155	genome.wustl.edu	37	15	43931107	43931107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172095.1	-1	reviewed	p.F279L	0.986	62	0%	39	92.3%	0	-	possibly_damaging(0.812)	tolerated(0.65)	neutral(0.308)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FRMD5	84978	genome.wustl.edu	37	15	44184244	44184244	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032892.3	-1	validated	p.F221L	1.000	150	0%	142	42.3%	5	60%	benign(0.009)	tolerated(0.11)	neutral(0.272)	HMMPfam_FERM_C,superfamily_PH domain-like
CTDSPL2	51496	genome.wustl.edu	37	15	44778895	44778895	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016396.2	+1	validated	p.N158H	1.000	50	0%	126	49.2%	19	52.6%	benign(0.03)	tolerated(0.09)	neutral(0.298)	NULL
SPG11	80208	genome.wustl.edu	37	15	44856864	44856864	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025137.3	-1	reviewed	p.V2344	1.000	75	0%	102	30.4%	12	8.3%	-	-	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44876666	44876666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025137.3	-1	reviewed	p.F1738V	0.982	32	0%	42	28.6%	14	50%	probably_damaging(0.977)	deleterious(0.05)	deleterious(0.764)	NULL
SPG11	80208	genome.wustl.edu	37	15	44890503	44890503	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025137.3	-1	reviewed	p.E1321*	1.000	171	0%	203	51.2%	5	0%	-	-	-	NULL
DUOX2	50506	genome.wustl.edu	37	15	45387161	45387161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014080.4	-1	reviewed	p.E1456D	1.000	182	0%	59	44.1%	0	-	benign(0.235)	tolerated(0.11)	neutral(0.295)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
DUOX2	50506	genome.wustl.edu	37	15	45392330	45392330	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014080.4	-1	reviewed	p.F1034	0.996	88	0%	62	41.9%	0	-	-	-	-	NULL
DUOX2	50506	genome.wustl.edu	37	15	45405547	45405547	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014080.4	-1	reviewed	p.G21	0.002	29	0%	27	48.1%	0	-	-	-	-	NULL
DUOX1	53905	genome.wustl.edu	37	15	45428076	45428076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017434.3	+1	reviewed	p.R265H	0.011	48	0%	20	25%	0	-	possibly_damaging(0.811)	tolerated(0.08)	deleterious(0.605)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
DUOX1	53905	genome.wustl.edu	37	15	45455738	45455738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017434.3	+1	reviewed	p.F1419L	1.000	183	0%	89	47.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
GATM	2628	genome.wustl.edu	37	15	45658330	45658330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001482.2	-1	reviewed	p.D298Y	1.000	160	0%	114	44.7%	22	54.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Amidinotransf,superfamily_Pentein
PLDN	26258	genome.wustl.edu	37	15	45898632	45898632	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012388.2	+1	reviewed	p.E147*	1.000	219	0%	187	41.7%	53	26.4%	-	-	-	NULL
SQRDL	58472	genome.wustl.edu	37	15	45965849	45965849	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021199.2	+1	provisional	p.S168	0.801	81	0%	175	53.1%	16	0%	-	-	-	HMMPfam_Pyr_redox_2,superfamily_SSF51905
SEMA6D	80031	genome.wustl.edu	37	15	48055262	48055262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153618.1	+1	reviewed	p.F236L	1.000	303	0%	63	41.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SLC12A1	6557	genome.wustl.edu	37	15	48541839	48541839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000338.2	+1	reviewed	p.F584L	1.000	973	0%	295	42.7%	0	-	benign(0.111)	tolerated(0.31)	neutral(0.036)	HMMPfam_AA_permease
FBN1	2200	genome.wustl.edu	37	15	48718025	48718025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000138.4	-1	reviewed	p.R2414Q	0.996	181	0%	64	35.9%	16	12.5%	benign(0.027)	tolerated(0.4)	neutral(0.018)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA,PatternScan_EGF_CA
FBN1	2200	genome.wustl.edu	37	15	48760722	48760722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000138.4	-1	reviewed	p.E1490A	1.000	118	0%	43	55.8%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
ENSG00000250663	0	genome.wustl.edu	37	15	49170962	49170962	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508082	-1	novel	NULL	1.000	151	0%	98	49%	199	39.6%	-	-	-	-
ENSG00000250663	0	genome.wustl.edu	37	15	49170995	49170995	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508082	-1	novel	NULL	0.000	101	0%	79	30.4%	192	46.8%	-	-	-	-
GALK2	2585	genome.wustl.edu	37	15	49574198	49574198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002044.2	+1	reviewed	p.E173D	1.000	383	0%	46	54.3%	10	50%	benign(0.128)	tolerated(0.5)	neutral(0.021)	HMMPfam_GHMP_kinases_N,superfamily_Ribosomal_S5_D2-typ_fold
C15orf33	196951	genome.wustl.edu	37	15	49860462	49860462	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152647.2	-1	validated	p.R243*	0.005	136	0.7%	42	42.9%	0	-	-	-	-	NULL
DTWD1	56986	genome.wustl.edu	37	15	49926848	49926848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144955.1	+1	validated	p.S175F	0.001	101	0%	28	35.7%	23	47.8%	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_DTW
ATP8B4	79895	genome.wustl.edu	37	15	50171590	50171590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024837.2	-1	validated	p.M922V	1.000	136	0%	88	39.8%	0	-	benign(0.001)	tolerated(0.92)	-	superfamily_SSF81665
SLC27A2	11001	genome.wustl.edu	37	15	50519277	50519277	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003645.3	+1	reviewed	p.V453	0.999	188	0.5%	154	43.5%	8	75%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
USP8	9101	genome.wustl.edu	37	15	50790857	50790857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128610.1	+1	validated	p.L1035I	1.000	73	1.4%	96	46.9%	37	40.5%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_UCH,superfamily_SSF54001
USP50	373509	genome.wustl.edu	37	15	50833339	50833339	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203494.4	-1	validated	p.I194	0.746	350	0%	110	39.1%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
TRPM7	54822	genome.wustl.edu	37	15	50867122	50867122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017672.4	-1	reviewed	p.S1649Y	1.000	128	0%	127	44.1%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like
TRPM7	54822	genome.wustl.edu	37	15	50885830	50885830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017672.4	-1	reviewed	p.R1198C	1.000	115	0%	110	49.1%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51226828	51226828	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007347.3	+1	validated	p.E293*	1.000	87	0%	120	33.3%	2	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
CYP19A1	1588	genome.wustl.edu	37	15	51504725	51504725	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000103.3	-1	reviewed	p.K352T	1.000	458	0%	63	41.3%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP19A1	1588	genome.wustl.edu	37	15	51507953	51507953	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000103.3	-1	reviewed	p.E269*	0.763	910	0%	159	42.1%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP19A1	1588	genome.wustl.edu	37	15	51510853	51510853	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000103.3	-1	reviewed	e5-1	1.000	185	0%	48	50%	1	0%	-	-	-	-
DMXL2	23312	genome.wustl.edu	37	15	51741195	51741195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015263.3	-1	validated	p.L3033I	1.000	46	0%	34	41.2%	7	85.7%	benign(0.047)	deleterious(0.04)	neutral(0.352)	NULL
DMXL2	23312	genome.wustl.edu	37	15	51742425	51742425	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015263.3	-1	validated	p.L2934	0.001	208	0%	64	45.3%	9	55.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DMXL2	23312	genome.wustl.edu	37	15	51757797	51757797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015263.3	-1	validated	p.K2523N	1.000	65	0%	67	46.3%	3	33.3%	possibly_damaging(0.936)	deleterious(0.02)	deleterious(0.764)	superfamily_WD40 repeat-like
DMXL2	23312	genome.wustl.edu	37	15	51828437	51828437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015263.3	-1	validated	p.R747Q	1.000	248	0%	44	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320
SCG3	29106	genome.wustl.edu	37	15	51984503	51984503	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013243.3	+1	reviewed	p.F280V	1.000	135	0%	74	41.9%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
SCG3	29106	genome.wustl.edu	37	15	51991521	51991521	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013243.3	+1	reviewed	p.L331	1.000	81	0%	92	40.2%	0	-	-	-	-	NULL
TMOD2	29767	genome.wustl.edu	37	15	52098584	52098584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014548.3	+1	reviewed	p.L296S	1.000	91	0%	39	41%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tropomodulin,superfamily_SSF52047
LEO1	123169	genome.wustl.edu	37	15	52242139	52242139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138792.2	-1	provisional	p.R555Q	1.000	136	0%	64	45.3%	15	13.3%	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	HMMPfam_Leo1
LEO1	123169	genome.wustl.edu	37	15	52252927	52252927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138792.2	-1	provisional	p.N308T	0.290	253	0%	180	40%	17	82.3%	benign(0.026)	tolerated(1)	neutral(0.001)	HMMPfam_Leo1
LEO1	123169	genome.wustl.edu	37	15	52258279	52258279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138792.2	-1	provisional	p.N161H	0.899	354	0%	191	52.4%	13	76.9%	possibly_damaging(0.887)	tolerated(0.19)	neutral(0.396)	NULL
LEO1	123169	genome.wustl.edu	37	15	52258702	52258702	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138792.2	-1	provisional	e2-1	1.000	172	0%	107	57.9%	0	-	-	-	-	-
MYO5C	55930	genome.wustl.edu	37	15	52543640	52543640	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018728.2	-1	validated	p.E537*	1.000	113	0%	170	40%	12	16.6%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52605946	52605946	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000259.3	-1	reviewed	p.E1839*	1.000	110	0%	143	51.7%	7	42.8%	-	-	-	NULL
MYO5A	4644	genome.wustl.edu	37	15	52659253	52659253	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000259.3	-1	reviewed	p.I1045	0.042	333	0%	100	50%	2	0%	-	-	-	NULL
MYO5A	4644	genome.wustl.edu	37	15	52680040	52680040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000259.3	-1	reviewed	p.L580I	1.000	158	0%	128	43%	2	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52700261	52700261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000259.3	-1	reviewed	p.R278Q	0.999	178	0%	76	46.1%	1	0%	benign(0.133)	tolerated(0.44)	neutral(0.024)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5A	4644	genome.wustl.edu	37	15	52718151	52718151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000259.3	-1	reviewed	p.N111H	1.000	140	0%	80	47.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM214A	56204	genome.wustl.edu	37	15	52901753	52901753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019600.2	-1	validated	p.R453Q	0.000	125	0%	95	47.4%	12	41.6%	benign(0.015)	tolerated(0.25)	neutral(0.037)	NULL
WDR72	256764	genome.wustl.edu	37	15	53994385	53994385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182758.2	-1	validated	p.F505L	1.000	64	0%	85	44.7%	46	52.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR72	256764	genome.wustl.edu	37	15	54005025	54005025	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182758.2	-1	validated	p.R219*	0.999	141	0%	97	43.3%	9	0%	-	-	-	superfamily_WD40 repeat-like
UNC13C	440279	genome.wustl.edu	37	15	54305729	54305729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.R210I	0.996	66	0%	23	21.7%	0	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54307034	54307034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.D645A	1.000	269	0%	50	52%	0	-	benign(0.009)	tolerated(0.19)	neutral(0.050)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54307906	54307906	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.E936*	1.000	238	0%	72	47.2%	0	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54308000	54308000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.R967I	0.998	219	0.5%	67	41.8%	0	-	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54308020	54308020	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.E974*	1.000	233	0%	72	37.5%	0	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54542603	54542603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.E1137K	1.000	126	0%	43	53.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
UNC13C	440279	genome.wustl.edu	37	15	54592513	54592513	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.E1404*	1.000	263	0%	111	27%	0	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54786813	54786813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.E1647D	1.000	115	0%	51	47.1%	0	-	benign(0.005)	tolerated(0.08)	neutral(0.300)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54860039	54860039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080534.1	+1	provisional	p.F2000L	1.000	112	0%	38	15.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Membr_traf_MHD
RAB27A	5873	genome.wustl.edu	37	15	55526984	55526984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004580.3	-1	reviewed	p.R50I	1.000	266	0%	76	48.7%	20	35%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIGB	9488	genome.wustl.edu	37	15	55631507	55631507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004855.4	+1	reviewed	p.F279L	1.000	454	0%	497	43.5%	13	61.5%	benign(0.338)	tolerated(0.48)	neutral(0.117)	HMMPfam_Glyco_transf_22
CCPG1	9236	genome.wustl.edu	37	15	55651722	55651722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004748.3	-1	validated	p.K750R	0.961	51	0%	67	50.7%	12	75%	benign(0.02)	tolerated(0.38)	neutral(0.019)	NULL
PRTG	283659	genome.wustl.edu	37	15	55976056	55976056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173814.4	-1	validated	p.K157N	1.000	193	0%	45	33.3%	0	-	probably_damaging(0.962)	tolerated(0.13)	deleterious(0.657)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NEDD4	4734	genome.wustl.edu	37	15	56130751	56130751	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198400.2	-1	validated	p.E1042*	0.998	102	0%	195	13.3%	3	0%	-	-	-	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
NEDD4	4734	genome.wustl.edu	37	15	56208732	56208732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198400.2	-1	validated	p.L100I	1.000	135	0%	89	53.9%	0	-	unknown(0)	deleterious(0.01)	-	NULL
RFX7	64864	genome.wustl.edu	37	15	56386261	56386261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022841.5	-1	validated	p.R1222I	1.000	68	0%	46	41.3%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RFX7	64864	genome.wustl.edu	37	15	56386849	56386849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022841.5	-1	validated	p.F1026C	1.000	125	0%	78	47.4%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RFX7	64864	genome.wustl.edu	37	15	56387708	56387708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022841.5	-1	validated	p.S740G	0.381	202	0%	75	50.7%	7	57.1%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
RFX7	64864	genome.wustl.edu	37	15	56395777	56395777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022841.5	-1	validated	p.R165C	1.000	93	0%	63	46%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"
TEX9	374618	genome.wustl.edu	37	15	56720593	56720593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198524.1	+1	provisional	p.S376F	1.000	190	0%	39	43.6%	21	23.8%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
MNS1	55329	genome.wustl.edu	37	15	56748599	56748599	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018365.2	-1	reviewed	p.E116*	1.000	519	0.2%	294	44.2%	7	28.5%	-	-	-	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56996376	56996376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017661.2	-1	validated	p.D40N	1.000	418	0%	162	42.6%	21	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TCF12	6938	genome.wustl.edu	37	15	57524504	57524504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207036.1	+1	reviewed	p.S234Y	1.000	191	0%	49	36.7%	65	49.2%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
CGNL1	84952	genome.wustl.edu	37	15	57731269	57731269	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032866.3	+1	validated	p.E358*	1.000	41	0%	24	41.7%	3	33.3%	-	-	-	NULL
POLR2M	81488	genome.wustl.edu	37	15	58001541	58001541	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015532.3	+1	reviewed	p.K248T	0.992	70	0%	37	59.5%	21	42.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AQP9	366	genome.wustl.edu	37	15	58430854	58430854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020980.3	+1	reviewed	p.F30L	1.000	363	0%	78	43.6%	1	0%	benign(0.024)	tolerated(0.76)	neutral(0.002)	HMMPfam_MIP,superfamily_Aquaporin-like
AQP9	366	genome.wustl.edu	37	15	58467154	58467154	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020980.3	+1	reviewed	p.I138	0.034	222	0%	88	50%	0	-	-	-	-	HMMPfam_MIP,superfamily_Aquaporin-like
ADAM10	102	genome.wustl.edu	37	15	58903261	58903261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001110.2	-1	reviewed	p.T581A	1.000	202	0%	162	37%	69	39.1%	benign(0.234)	tolerated(0.31)	neutral(0.051)	NULL
HSP90AB4P	664618	genome.wustl.edu	37	15	58983391	58983391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380522	-1	known	p.E477K	1.000	73	0%	29	41.4%	1	100%	-	-	-	HMMPfam_HSP90,superfamily_SSF110942
SLTM	79811	genome.wustl.edu	37	15	59186051	59186051	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024755.2	-1	validated	p.S539	0.000	377	0.3%	305	42.6%	55	38.1%	-	-	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59323277	59323277	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017610.6	+1	reviewed	p.E86*	1.000	170	0%	151	41.1%	8	50%	-	-	-	NULL
CCNB2	9133	genome.wustl.edu	37	15	59399591	59399591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004701.2	+1	reviewed	p.R32Q	0.846	51	0%	149	46.3%	66	57.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO1E	4643	genome.wustl.edu	37	15	59464114	59464114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004998.2	-1	validated	p.I821T	0.998	165	0%	80	46.3%	59	55.9%	possibly_damaging(0.743)	deleterious(0)	deleterious(0.717)	HMMPfam_Myosin_TH1
MYO1E	4643	genome.wustl.edu	37	15	59500924	59500924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004998.2	-1	validated	p.N496D	1.000	233	0%	63	50.8%	28	53.5%	possibly_damaging(0.671)	tolerated(0.63)	neutral(0.241)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1E	4643	genome.wustl.edu	37	15	59510099	59510099	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004998.2	-1	validated	p.F366	1.000	151	0%	66	54.5%	16	50%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
GCNT3	9245	genome.wustl.edu	37	15	59911407	59911407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004751.2	+1	reviewed	p.D324Y	1.000	70	0%	55	41.8%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Branch
FOXB1	27023	genome.wustl.edu	37	15	60297458	60297458	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012182.2	+1	validated	p.N99I	1.000	33	0%	13	61.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
VPS13C	54832	genome.wustl.edu	37	15	62217669	62217669	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020821.1	-1	validated	p.E2199*	1.000	46	0%	73	42.5%	1	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62270908	62270908	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020821.1	-1	validated	p.S736*	1.000	384	0%	190	18.4%	2	0%	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	62948248	62948248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015059.2	+1	reviewed	p.S208L	1.000	108	0%	70	50%	0	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
TLN2	83660	genome.wustl.edu	37	15	63008650	63008650	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015059.2	+1	reviewed	p.R919*	1.000	27	0%	31	38.7%	1	0%	-	-	-	superfamily_SSF109885
TLN2	83660	genome.wustl.edu	37	15	63111780	63111780	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015059.2	+1	reviewed	p.G2279	0.000	85	0%	46	50%	2	50%	-	-	-	NULL
LACTB	114294	genome.wustl.edu	37	15	63433504	63433504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032857.2	+1	reviewed	p.R382C	1.000	201	0%	157	45.2%	6	33.3%	possibly_damaging(0.753)	tolerated(0.1)	deleterious(0.563)	HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like
LACTB	114294	genome.wustl.edu	37	15	63433648	63433648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032857.2	+1	reviewed	p.L430I	1.000	228	0%	139	39.6%	6	16.6%	benign(0.143)	tolerated(0.22)	neutral(0.055)	HMMPfam_Beta-lactamase,superfamily_beta-lactamase/transpeptidase-like
CA12	771	genome.wustl.edu	37	15	63618508	63618508	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001218.3	-1	reviewed	p.K347	1.000	189	0%	125	41.6%	27	51.8%	-	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63932614	63932614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003922.3	-1	reviewed	p.H3880N	1.000	173	0%	42	47.6%	11	72.7%	possibly_damaging(0.891)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	64067038	64067038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003922.3	-1	reviewed	p.R262Q	0.998	147	0%	92	35.9%	3	0%	unknown(0)	tolerated(0.28)	-	NULL
SNX1	6642	genome.wustl.edu	37	15	64429083	64429083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003099.3	+1	reviewed	p.K490N	0.982	94	0%	113	50.4%	154	31.8%	possibly_damaging(0.642)	tolerated(0.09)	deleterious(0.521)	HMMPfam_Vps5
SNX22	79856	genome.wustl.edu	37	15	64446601	64446601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024798.2	+1	validated	p.V159A	0.887	42	0%	27	33.3%	0	-	benign(0.009)	tolerated(0.12)	neutral(0.261)	NULL
CSNK1G1	53944	genome.wustl.edu	37	15	64495340	64495340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022048.3	-1	validated	p.T350P	1.000	307	0%	154	38.3%	12	41.6%	benign(0.062)	tolerated(0.3)	neutral(0.033)	NULL
ZNF609	23060	genome.wustl.edu	37	15	64967597	64967597	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015042.1	+1	provisional	p.I848	0.997	52	0%	59	39%	5	40%	-	-	-	NULL
SPG21	51324	genome.wustl.edu	37	15	65262520	65262520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127889.1	-1	reviewed	p.L165I	1.000	74	0%	100	36%	96	54.1%	possibly_damaging(0.531)	tolerated(0.06)	deleterious(0.502)	superfamily_SSF53474
CLPX	10845	genome.wustl.edu	37	15	65447302	65447302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006660.3	-1	provisional	p.R477W	0.997	196	0%	93	44.1%	44	47.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AAA_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
DPP8	54878	genome.wustl.edu	37	15	65743441	65743441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_197960.2	-1	reviewed	p.R824C	1.000	79	0%	82	42.7%	11	54.5%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
PTPLAD1	51495	genome.wustl.edu	37	15	65864667	65864667	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016395.2	+1	validated	p.S325	0.973	214	0%	172	39%	27	7.4%	-	-	-	HMMPfam_PTPLA
PTPLAD1	51495	genome.wustl.edu	37	15	65868705	65868705	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016395.2	+1	validated	p.K359N	1.000	95	0%	91	51.6%	32	9.3%	unknown(0)	tolerated(0.27)	-	NULL
C15orf44	81556	genome.wustl.edu	37	15	65874335	65874335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030800.1	-1	predicted	p.R421I	1.000	347	0%	259	40.9%	44	43.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65917243	65917243	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004727.2	+1	validated	p.V275	0.000	50	0%	73	24.7%	2	0%	-	-	-	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65942932	65942932	+	Silent	SNP	C	C	T	rs185027365	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004727.2	+1	validated	p.H815	0.001	340	0%	184	43.5%	9	44.4%	-	-	-	NULL
DENND4A	10260	genome.wustl.edu	37	15	65983601	65983601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144823.1	-1	validated	p.L1110I	1.000	89	0%	88	48.9%	2	100%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
DENND4A	10260	genome.wustl.edu	37	15	66030239	66030239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144823.1	-1	validated	p.E282D	1.000	88	0%	70	45.7%	2	50%	benign(0.011)	tolerated(0.26)	neutral(0.035)	NULL
DENND4A	10260	genome.wustl.edu	37	15	66044862	66044862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144823.1	-1	validated	p.R139I	1.000	232	0%	89	39.3%	2	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
MEGF11	84465	genome.wustl.edu	37	15	66273231	66273231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032445.2	-1	validated	p.E216G	1.000	23	0.000	5	0.800	0	-	benign(0.012)	tolerated(0.18)	neutral(0.057)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,PatternScan_EGF_2
DIS3L	115752	genome.wustl.edu	37	15	66606430	66606430	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133375.3	+1	validated	p.L180	0.893	237	0%	99	34.3%	13	15.3%	-	-	-	NULL
DIS3L	115752	genome.wustl.edu	37	15	66607510	66607510	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133375.3	+1	validated	p.D234	0.003	234	0%	52	38.5%	16	68.7%	-	-	-	NULL
RPL4	6124	genome.wustl.edu	37	15	66791860	66791860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000968.2	-1	reviewed	p.K390T	0.730	200	0%	213	45.1%	3074	49.5%	unknown(0)	tolerated(0.06)	-	NULL
AAGAB	79719	genome.wustl.edu	37	15	67529104	67529104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024666.3	-1	validated	p.R43I	0.829	259	0%	111	45%	38	42.1%	benign(0.004)	tolerated(0.34)	neutral(0.023)	NULL
GLCE	26035	genome.wustl.edu	37	15	69561164	69561164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015554.1	+1	validated	p.F479V	1.000	51	0%	34	38.2%	17	35.2%	benign(0)	tolerated(0.88)	-	HMMPfam_C5-epim_C
KIF23	9493	genome.wustl.edu	37	15	69714463	69714463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138555.1	+1	reviewed	p.R150Q	1.000	107	0%	107	47.7%	16	37.5%	possibly_damaging(0.921)	tolerated(0.08)	deleterious(0.671)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000245184	0	genome.wustl.edu	37	15	69745899	69745899	+	RNA	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000501805	-1	novel	NULL	0.000	213	0%	185	47.6%	0	-	-	-	-	-
ENSG00000245184	0	genome.wustl.edu	37	15	69746259	69746259	+	RNA	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000501805	-1	novel	NULL	0.001	41	0%	60	55%	0	-	-	-	-	-
MYO9A	4649	genome.wustl.edu	37	15	72190522	72190522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006901.2	-1	validated	p.R1441I	0.997	153	0%	77	11.7%	2	50%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
PARP6	56965	genome.wustl.edu	37	15	72554016	72554016	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020214.2	-1	provisional	p.K143T	1.000	322	0%	95	41.1%	49	38.7%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
TMEM202	338949	genome.wustl.edu	37	15	72691082	72691082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080462.1	+1	provisional	p.R57Q	0.930	56	0%	52	46.2%	0	-	probably_damaging(0.958)	tolerated(0.21)	neutral(0.446)	NULL
NEO1	4756	genome.wustl.edu	37	15	73547064	73547064	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002499.3	+1	validated	p.Q662H	0.998	85	0%	22	54.5%	31	64.5%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NEO1	4756	genome.wustl.edu	37	15	73590734	73590734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002499.3	+1	validated	p.S1316L	1.000	104	0%	60	15%	41	9.7%	benign(0.291)	tolerated(0.22)	neutral(0.132)	HMMPfam_Neogenin_C
HCN4	10021	genome.wustl.edu	37	15	73614974	73614974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005477.2	-1	reviewed	p.R1154W	1.000	9	0.000	19	0.632	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HCN4	10021	genome.wustl.edu	37	15	73659853	73659853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005477.2	-1	reviewed	p.W253C	1.000	20	0%	25	56%	0	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	HMMPfam_Ion_trans_N
C15orf60	283677	genome.wustl.edu	37	15	73766242	73766242	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042367.1	+1	predicted	p.F77V	1.000	543	0%	190	41.1%	0	-	benign(0.032)	tolerated(0.46)	neutral(0.013)	NULL
NPTN	27020	genome.wustl.edu	37	15	73889625	73889625	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012428.3	-1	reviewed	p.T59	0.998	140	0%	22	27.3%	1	0%	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
C15orf59	388135	genome.wustl.edu	37	15	74043396	74043396	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039614.1	-1	predicted	p.R26*	1.000	24	0%	20	55%	5	20%	-	-	-	NULL
LOXL1	4016	genome.wustl.edu	37	15	74238789	74238789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005576.2	+1	reviewed	p.D415N	0.987	26	0%	12	33.3%	74	35.1%	possibly_damaging(0.949)	deleterious(0.02)	deleterious(0.776)	HMMPfam_Lysyl_oxidase
CLK3	1198	genome.wustl.edu	37	15	74920958	74920958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130028.1	+1	reviewed	p.R528Q	1.000	118	0%	84	38.1%	78	42.3%	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CYP1A2	1544	genome.wustl.edu	37	15	75042497	75042497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000761.3	+1	reviewed	p.A140S	1.000	98	0%	28	39.3%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_p450,superfamily_Cytochrome_P450
LOC646791	646791	genome.wustl.edu	37	15	75614157	75614157	+	RNA	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_017650.3	-1	model	NULL	0.193	345	0%	368	49.2%	0	-	-	-	-	-
LOC646791	646791	genome.wustl.edu	37	15	75614514	75614514	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_017650.3	-1	model	NULL	0.998	123	0%	241	43.6%	2	0%	-	-	-	-
MAN2C1	4123	genome.wustl.edu	37	15	75656407	75656407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006715.2	-1	validated	p.F241L	1.000	75	0%	26	50%	12	33.3%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	NULL
SIN3A	25942	genome.wustl.edu	37	15	75688742	75688742	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145357.1	-1	reviewed	p.K650N	0.998	98	0%	62	46.8%	35	48.5%	possibly_damaging(0.783)	deleterious(0.01)	deleterious(0.699)	HMMPfam_HDAC_interact,HMMSmart_HDAC_interact
SCAPER	49855	genome.wustl.edu	37	15	76763674	76763674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020843.2	-1	validated	p.S985Y	1.000	125	0%	46	41.3%	8	12.5%	possibly_damaging(0.737)	deleterious(0.03)	deleterious(0.634)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77025597	77025597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020843.2	-1	validated	p.E664D	0.997	408	0%	98	44.9%	7	85.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TSPAN3	10099	genome.wustl.edu	37	15	77346537	77346537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005724.5	-1	reviewed	p.D139Y	1.000	126	0%	96	32.3%	270	41.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
LINGO1	84894	genome.wustl.edu	37	15	77906464	77906464	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032808.5	-1	validated	p.I595	0.679	103	0%	55	50.9%	46	34.7%	-	-	-	NULL
DNAJA4	55466	genome.wustl.edu	37	15	78562883	78562883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018602.3	+1	validated	p.K88N	1.000	127	0%	108	46.3%	8	37.5%	possibly_damaging(0.522)	deleterious(0.02)	deleterious(0.559)	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,PatternScan_DNAJ_1
IREB2	3658	genome.wustl.edu	37	15	78790409	78790409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004136.2	+1	validated	p.S939L	0.262	196	0%	151	41.1%	37	56.7%	benign(0)	deleterious(0.02)	neutral(0.383)	superfamily_Aconitase
CHRNA5	1138	genome.wustl.edu	37	15	78882800	78882800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000745.2	+1	provisional	p.F356C	1.000	251	0%	88	43.2%	10	20%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CHRNB4	1143	genome.wustl.edu	37	15	78921974	78921974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000750.3	-1	validated	p.D225N	0.998	830	0%	216	45.4%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
RASGRF1	5923	genome.wustl.edu	37	15	79327525	79327525	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002891.4	-1	reviewed	p.I302	1.000	21	0%	28	17.9%	0	-	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
KIAA1024	23251	genome.wustl.edu	37	15	79749276	79749276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015206.2	+1	validated	p.D263N	1.000	102	0%	66	42.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81201518	81201518	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018689.1	+1	validated	p.P556	0.021	287	0%	72	44.4%	6	33.3%	-	-	-	NULL
IL16	3603	genome.wustl.edu	37	15	81589280	81589280	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172217.3	+1	reviewed	p.E638	0.982	38	0%	21	42.9%	0	-	-	-	-	NULL
IL16	3603	genome.wustl.edu	37	15	81592192	81592192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172217.3	+1	reviewed	p.R842I	1.000	20	0%	17	52.9%	3	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FAM154B	283726	genome.wustl.edu	37	15	82574462	82574462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008226.1	+1	predicted	p.D86N	1.000	86	0%	74	31.1%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
CPEB1	64506	genome.wustl.edu	37	15	83296006	83296006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030594.3	-1	reviewed	p.S43Y	1.000	168	0%	95	13.7%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83331940	83331940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004644.3	-1	validated	p.S829F	1.000	52	0%	27	25.9%	0	-	unknown(0)	deleterious(0.01)	-	NULL
AP3B2	8120	genome.wustl.edu	37	15	83346079	83346079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004644.3	-1	validated	p.A479S	0.867	175	0%	127	45.7%	0	-	benign(0.002)	tolerated(0.34)	neutral(0.023)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
AP3B2	8120	genome.wustl.edu	37	15	83346101	83346101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004644.3	-1	validated	p.K471N	1.000	183	0%	133	46.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
FSD2	123722	genome.wustl.edu	37	15	83456087	83456087	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007122.2	-1	provisional	p.F19C	0.988	140	0%	119	35.3%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
FAM103A1	83640	genome.wustl.edu	37	15	83657925	83657925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031452.2	+1	predicted	p.R52I	1.000	32	0%	61	52.5%	36	41.6%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
BNC1	646	genome.wustl.edu	37	15	83933259	83933259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001717.3	-1	reviewed	p.F248L	1.000	113	0%	75	40%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
SH3GL3	6457	genome.wustl.edu	37	15	84233922	84233922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003027.3	+1	validated	p.L51I	1.000	129	0%	122	51.6%	0	-	benign(0.002)	tolerated(0.56)	neutral(0.006)	HMMPfam_BAR,HMMSmart_SM00721
AKAP13	11214	genome.wustl.edu	37	15	86076892	86076892	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006738.4	+1	reviewed	p.E87*	1.000	274	0%	100	36%	1	0%	-	-	-	NULL
AKAP13	11214	genome.wustl.edu	37	15	86123532	86123532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006738.4	+1	reviewed	p.D745Y	0.023	68	0%	42	47.6%	6	66.6%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
AKAP13	11214	genome.wustl.edu	37	15	86123680	86123680	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006738.4	+1	reviewed	p.E794A	1.000	124	0%	49	55.1%	4	75%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
AGBL1	123624	genome.wustl.edu	37	15	87217590	87217590	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152336.2	+1	validated	p.S1002	0.877	120	0.000	8	0.750	0	-	-	-	-	NULL
NTRK3	4916	genome.wustl.edu	37	15	88726711	88726711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012338.1	-1	reviewed	p.K111N	1.000	162	0%	57	54.4%	0	-	benign(0.261)	tolerated(0.09)	neutral(0.324)	superfamily_L domain-like
RLBP1	6017	genome.wustl.edu	37	15	89760549	89760549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000326.4	-1	reviewed	p.D50Y	1.000	71	0%	47	40.4%	0	-	benign(0.426)	deleterious(0.04)	deleterious(0.487)	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
FANCI	55215	genome.wustl.edu	37	15	89790915	89790915	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113378.1	+1	reviewed	p.T13S	0.921	199	0%	199	47.7%	13	30.7%	benign(0.003)	tolerated(0.78)	neutral(0.001)	NULL
WDR93	56964	genome.wustl.edu	37	15	90258240	90258240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020212.1	+1	provisional	p.K224Q	0.992	225	0%	126	50%	0	-	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
WDR93	56964	genome.wustl.edu	37	15	90281329	90281329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020212.1	+1	provisional	p.F608S	0.823	159	0%	128	43%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BLM	641	genome.wustl.edu	37	15	91326080	91326080	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000057.2	+1	reviewed	p.L862	1.000	122	0%	143	46.2%	6	50%	-	-	-	HMMSmart_DEXDc,superfamily_SSF52540
MAN2A2	4122	genome.wustl.edu	37	15	91448699	91448699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006122.2	+1	validated	p.Q117H	1.000	16	0%	44	54.5%	9	88.8%	possibly_damaging(0.543)	tolerated(0.13)	neutral(0.436)	superfamily_Glyco_hydro/deAcase_b/a-brl
SV2B	9899	genome.wustl.edu	37	15	91811726	91811726	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014848.4	+1	validated	p.E422*	1.000	237	0%	100	45%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLCO3A1	28232	genome.wustl.edu	37	15	92647678	92647678	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013272.3	+1	validated	p.S305	0.341	174	0%	155	49.7%	6	33.3%	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
CHD2	1106	genome.wustl.edu	37	15	93552396	93552396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001271.3	+1	reviewed	p.V1479L	1.000	142	0%	54	46.3%	19	63.1%	possibly_damaging(0.666)	deleterious(0.01)	deleterious(0.641)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MCTP2	55784	genome.wustl.edu	37	15	94841798	94841798	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018349.3	+1	validated	p.E102*	0.515	46	0%	34	47.1%	0	-	-	-	-	NULL
SPATA8	145946	genome.wustl.edu	37	15	97327485	97327485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173499.3	+1	provisional	p.K64N	0.014	64	0%	29	44.8%	0	-	unknown(0)	-	-	NULL
ARRDC4	91947	genome.wustl.edu	37	15	98512368	98512368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183376.2	+1	validated	p.I214S	1.000	31	0%	23	60.9%	16	56.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Arrestin_C,superfamily_E set domains
FAM169B	283777	genome.wustl.edu	37	15	98982946	98982946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182562.2	-1	validated	p.K165E	0.002	475	0%	138	39.1%	0	-	possibly_damaging(0.936)	tolerated(0.24)	neutral(0.419)	NULL
IGF1R	3480	genome.wustl.edu	37	15	99434850	99434850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000875.3	+1	reviewed	p.R313C	1.000	56	0.000	8	0.625	13	38.4%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Furin-like,superfamily_Grow_fac_recept
IGF1R	3480	genome.wustl.edu	37	15	99442815	99442815	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000875.3	+1	reviewed	p.N404	1.000	223	0%	70	35.7%	14	42.8%	-	-	-	HMMPfam_Recep_L_domain,superfamily_SSF52058
SYNM	23336	genome.wustl.edu	37	15	99670115	99670115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000336292	+1	known	p.R516Q	0.000	46	0%	103	43.7%	0	-	benign(0.027)	tolerated(0.74)	neutral(0.003)	NULL
SYNM	23336	genome.wustl.edu	37	15	99670505	99670505	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000336292	+1	known	p.L646R	0.985	101	0%	96	50%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SYNM	23336	genome.wustl.edu	37	15	99670953	99670953	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145728.2	+1	reviewed	p.H796R	0.000	61	0%	73	43.8%	1	0%	-	-	-	NULL
SYNM	23336	genome.wustl.edu	37	15	99672479	99672479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000336292	+1	known	p.S1304N	0.000	89	0%	53	28.3%	1	0%	benign(0.102)	deleterious(0)	neutral(0.453)	NULL
CERS3	204219	genome.wustl.edu	37	15	101031058	101031058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178842.3	-1	validated	p.E84D	1.000	173	0%	112	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
LINS	55180	genome.wustl.edu	37	15	101112155	101112155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040614.1	-1	reviewed	p.D446E	0.647	134	0%	58	36.2%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRK1	79705	genome.wustl.edu	37	15	101550769	101550769	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024652.3	+1	validated	p.F368	0.930	164	0%	234	48.3%	3	33.3%	-	-	-	superfamily_L domain-like
CHSY1	22856	genome.wustl.edu	37	15	101718111	101718111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000254190	-1	known	p.D631N	1.000	48	0%	58	50%	43	30.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CHGN,superfamily_SSF53448
TARSL2	123283	genome.wustl.edu	37	15	102242519	102242519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152334.2	-1	validated	p.P382T	1.000	294	0%	254	41.3%	6	66.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_ThrRS/AlaRS common domain
LOC100128108	100128108	genome.wustl.edu	37	15	102277445	102277445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001721901.2	-1	model	p.S87Y	0.076	9	0.000	10	0.400	0	-	-	-	-	NULL
LUC7L	55692	genome.wustl.edu	37	16	270668	270668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201412.1	-1	validated	p.D79Y	1.000	63	0%	175	44%	62	56.4%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_LUC7
PRR25	388199	genome.wustl.edu	37	16	855731	855731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013638.1	+1	provisional	p.A97T	0.073	4	0.000	20	0.600	0	-	unknown(0)	-	-	NULL
CACNA1H	8912	genome.wustl.edu	37	16	1250544	1250544	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021098.2	+1	reviewed	p.I364	0.939	6	0.000	43	0.419	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1H	8912	genome.wustl.edu	37	16	1265065	1265065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021098.2	+1	reviewed	p.R1675W	0.739	48	0%	200	52%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
IFT140	9742	genome.wustl.edu	37	16	1630771	1630771	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014714.3	-1	validated	p.R505*	1.000	37	0%	81	46.9%	12	50%	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
CRAMP1L	57585	genome.wustl.edu	37	16	1715080	1715080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020825.3	+1	validated	p.S898L	0.996	148	0%	232	54.3%	9	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AMDHD2	51005	genome.wustl.edu	37	16	2580428	2580428	+	Nonsense_Mutation	SNP	C	C	T	rs141294706	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000413459	+1	known	p.R485*	0.000	16	0%	57	47.4%	7	71.4%	-	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2811602	2811602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016333.3	+1	validated	p.S358N	1.000	255	0%	72	56.9%	74	51.3%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812688	2812688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016333.3	+1	validated	p.R720I	1.000	120	0%	49	44.9%	65	38.4%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2813978	2813978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016333.3	+1	validated	p.S1150L	0.953	93	0%	86	38.4%	100	44%	unknown(0)	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2816255	2816255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016333.3	+1	validated	p.R1909Q	0.876	94	0%	25	60%	251	40.6%	unknown(0)	-	-	NULL
ZNF200	7752	genome.wustl.edu	37	16	3274113	3274113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003454.3	-1	validated	p.R323W	1.000	75	0%	170	48.8%	7	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TIGD7	91151	genome.wustl.edu	37	16	3350043	3350043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033208.2	-1	validated	p.S191Y	0.552	125	0%	198	40.4%	26	61.5%	benign(0.008)	tolerated(0.11)	neutral(0.272)	HMMPfam_DDE
NAA60	79903	genome.wustl.edu	37	16	3533527	3533527	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083600.1	+1	validated	p.R168*	1.000	148	0%	231	49.4%	76	51.3%	-	-	-	superfamily_Acyl_CoA_acyltransferase
CLUAP1	23059	genome.wustl.edu	37	16	3556381	3556381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015041.1	+1	provisional	p.R62L	1.000	144	0%	177	38.4%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cluap1
CREBBP	1387	genome.wustl.edu	37	16	3831269	3831269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004380.2	-1	reviewed	p.T538P	0.998	282	0%	208	43.8%	12	25%	probably_damaging(0.998)	tolerated(0.29)	deleterious(0.503)	NULL
ADCY9	115	genome.wustl.edu	37	16	4024709	4024709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001116.2	-1	reviewed	p.S944F	1.000	75	0%	122	41%	2	0%	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
ADCY9	115	genome.wustl.edu	37	16	4057481	4057481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001116.2	-1	reviewed	p.F591S	0.996	73	0%	47	59.6%	0	-	benign(0.026)	tolerated(0.57)	neutral(0.007)	NULL
CORO7	79585	genome.wustl.edu	37	16	4408101	4408101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024535.3	-1	validated	p.E821*	1.000	20	0%	20	65%	28	17.8%	-	-	-	HMMPfam_DUF1900
C16orf5	29965	genome.wustl.edu	37	16	4562821	4562821	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013399.2	-1	validated	p.F162	0.795	51	0%	41	46.3%	18	61.1%	-	-	-	HMMSmart_SM00714,HMMPfam_zf-LITAF-like
LOC342346	342346	genome.wustl.edu	37	16	4630036	4630036	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145011.1	+1	predicted	p.I754M	0.678	41	0%	73	52.1%	0	-	benign(0.229)	deleterious(0.02)	neutral(0.406)	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7383034	7383034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145891.2	+1	reviewed	p.P11H	1.000	477	0%	40	40%	0	-	possibly_damaging(0.596)	deleterious(0)	deleterious(0.650)	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7760682	7760682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145891.2	+1	reviewed	p.L398I	1.000	478	0%	130	41.5%	0	-	benign(0.388)	tolerated(0.25)	neutral(0.161)	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7760745	7760745	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145891.2	+1	reviewed	p.*419Q	1.000	340	0%	105	49.5%	0	-	-	-	-	NULL
USP7	7874	genome.wustl.edu	37	16	8988460	8988460	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003470.2	-1	validated	p.Y1050C	1.000	88	0%	165	35.8%	155	47.7%	probably_damaging(0.978)	tolerated(0.12)	deleterious(0.681)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9862740	9862740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000833.3	-1	reviewed	p.D855N	1.000	128	0%	24	37.5%	0	-	possibly_damaging(0.527)	tolerated(0.13)	neutral(0.430)	HMMPfam_NMDAR2_C
NUBP1	4682	genome.wustl.edu	37	16	10851782	10851782	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002484.2	+1	validated	p.L168	0.997	68	0%	52	46.2%	35	42.8%	-	-	-	PatternScan_MRP,HMMSmart_SM00382,HMMPfam_ParA,superfamily_P-loop containing nucleoside triphosphate hydrolases
CIITA	4261	genome.wustl.edu	37	16	11001528	11001528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000246.3	+1	reviewed	p.E727K	0.091	87	0%	25	52%	1	0%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
TXNDC11	51061	genome.wustl.edu	37	16	11824588	11824588	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015914.5	-1	provisional	p.Y204*	1.000	123	0.8%	141	43.3%	13	0%	-	-	-	superfamily_Thiordxn-like_fd
TXNDC11	51061	genome.wustl.edu	37	16	11827841	11827841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015914.5	-1	provisional	p.R189Q	1.000	78	0%	142	41.5%	16	6.2%	benign(0.04)	tolerated(0.55)	neutral(0.009)	superfamily_Thiordxn-like_fd
TXNDC11	51061	genome.wustl.edu	37	16	11827887	11827887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015914.5	-1	provisional	p.K174E	1.000	107	0%	159	41.5%	14	64.2%	possibly_damaging(0.676)	tolerated(0.13)	deleterious(0.493)	superfamily_Thiordxn-like_fd
TNFRSF17	608	genome.wustl.edu	37	16	12061683	12061683	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001192.2	+1	reviewed	p.E178	0.002	81	0%	49	36.7%	3	0%	-	-	-	NULL
ERCC4	2072	genome.wustl.edu	37	16	14016034	14016034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005236.2	+1	reviewed	p.F118L	1.000	86	0%	35	37.1%	0	-	benign(0.044)	tolerated(1)	neutral(0.003)	NULL
BFAR	51283	genome.wustl.edu	37	16	14758871	14758871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016561.2	+1	validated	p.L368S	0.999	255	0%	195	41%	35	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOMO1	23420	genome.wustl.edu	37	16	14989879	14989879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000456867	+1	known	p.R1239W	0.000	171	0%	439	18.9%	100	31%	unknown(0)	deleterious(0)	-	NULL
NTAN1	123803	genome.wustl.edu	37	16	15132508	15132508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173474.2	-1	provisional	p.R226C	0.573	124	0%	122	41%	76	46%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15705588	15705588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014647.3	-1	validated	p.L1160I	1.000	168	0%	93	10.8%	7	28.5%	benign(0.307)	tolerated(0.11)	neutral(0.367)	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15711345	15711345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014647.3	-1	validated	p.T923M	0.849	152	0%	36	47.2%	5	100%	benign(0.431)	tolerated(0.17)	neutral(0.200)	NULL
MYH11	4629	genome.wustl.edu	37	16	15813550	15813550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040114.1	-1	reviewed	p.Q1665H	1.000	392	0%	109	37.6%	4	0%	probably_damaging(0.993)	tolerated(0.11)	deleterious(0.722)	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15814759	15814759	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040114.1	-1	reviewed	p.F1583	0.630	300	0%	63	54%	6	0%	-	-	-	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15826559	15826559	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040114.1	-1	reviewed	p.K1178	1.000	192	0%	88	46.6%	17	23.5%	-	-	-	HMMPfam_Myosin_tail_1
FOPNL	123811	genome.wustl.edu	37	16	15977918	15977918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144600.2	-1	provisional	p.R58Q	1.000	137	0%	153	12.4%	18	22.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_LisH
XYLT1	64131	genome.wustl.edu	37	16	17202767	17202767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022166.3	-1	reviewed	p.E889K	1.000	69	0%	25	32%	1	0%	benign(0.088)	tolerated(0.05)	neutral(0.352)	NULL
XYLT1	64131	genome.wustl.edu	37	16	17211526	17211526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022166.3	-1	reviewed	p.S845L	0.986	212	0%	52	46.2%	0	-	benign(0.362)	tolerated(0.65)	neutral(0.118)	NULL
NOMO2	283820	genome.wustl.edu	37	16	18544337	18544337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004060.1	-1	reviewed	p.Y462C	1.000	1227	0%	445	24.5%	74	14.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SMG1	23049	genome.wustl.edu	37	16	18826960	18826960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015092.4	-1	reviewed	p.A3439V	1.000	178	0%	115	47%	19	47.3%	probably_damaging(0.957)	tolerated(0.3)	neutral(0.429)	NULL
SMG1	23049	genome.wustl.edu	37	16	18840904	18840904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015092.4	-1	reviewed	p.G3103R	0.999	139	0.7%	59	20.3%	12	25%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SMG1	23049	genome.wustl.edu	37	16	18844477	18844477	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015092.4	-1	reviewed	p.S2859	0.996	143	0%	68	45.6%	17	64.7%	-	-	-	NULL
SMG1	23049	genome.wustl.edu	37	16	18866192	18866192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015092.4	-1	reviewed	p.E1423D	1.000	415	0%	125	46.4%	7	57.1%	possibly_damaging(0.653)	tolerated(0.38)	neutral(0.247)	superfamily_ARM repeat
TMC5	79838	genome.wustl.edu	37	16	19483436	19483436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105248.1	+1	validated	p.E603D	1.000	133	0%	53	47.2%	2	50%	benign(0.015)	tolerated(0.41)	neutral(0.015)	NULL
TMC5	79838	genome.wustl.edu	37	16	19503514	19503514	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105248.1	+1	validated	p.K930	1.000	218	0%	242	38.8%	4	50%	-	-	-	NULL
GPR139	124274	genome.wustl.edu	37	16	20043505	20043505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002911.2	-1	validated	p.I205S	1.000	99	0%	49	46.9%	0	-	benign(0.177)	tolerated(0.13)	neutral(0.269)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR139	124274	genome.wustl.edu	37	16	20043735	20043735	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002911.2	-1	validated	p.I128	0.932	151	0%	78	39.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GP2	2813	genome.wustl.edu	37	16	20331754	20331754	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007240.1	-1	validated	p.E233*	0.787	147	0%	33	42.4%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
PDILT	204474	genome.wustl.edu	37	16	20387497	20387497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174924.1	-1	provisional	p.V146I	0.932	259	0%	63	50.8%	0	-	possibly_damaging(0.94)	tolerated(0.19)	neutral(0.434)	superfamily_Thiordxn-like_fd
ACSM5	54988	genome.wustl.edu	37	16	20448410	20448410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017888.2	+1	validated	p.D449N	1.000	173	0%	94	27.7%	0	-	benign(0.071)	tolerated(0.31)	neutral(0.032)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM2A	123876	genome.wustl.edu	37	16	20477000	20477000	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010845.2	+1	validated	p.L113	0.989	446	0%	80	48.7%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM2B	348158	genome.wustl.edu	37	16	20565110	20565110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105069.1	-1	validated	p.K243N	0.991	227	0%	20	45%	1	0%	benign(0.059)	tolerated(0.46)	neutral(0.016)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM2B	348158	genome.wustl.edu	37	16	20566602	20566602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105069.1	-1	validated	p.K195N	0.019	403	0%	118	47.5%	0	-	benign(0.01)	tolerated(0.36)	neutral(0.021)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM1	116285	genome.wustl.edu	37	16	20648104	20648104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052956.2	-1	validated	p.R419I	1.000	269	0%	36	47.2%	1	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM1	116285	genome.wustl.edu	37	16	20673143	20673143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052956.2	-1	validated	p.R322L	1.000	165	0%	51	43.1%	1	100%	possibly_damaging(0.866)	deleterious(0)	deleterious(0.780)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
THUMPD1	55623	genome.wustl.edu	37	16	20750238	20750238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017736.3	-1	validated	p.F129L	1.000	276	0%	148	42.6%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ACSM3	6296	genome.wustl.edu	37	16	20787204	20787204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005622.3	+1	validated	p.R88I	0.008	155	0%	102	33.3%	29	41.3%	benign(0.002)	tolerated(0.15)	neutral(0.241)	superfamily_Acetyl-CoA synthetase-like
ERI2	112479	genome.wustl.edu	37	16	20809211	20809211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142725.1	-1	validated	p.F637L	1.000	135	0.7%	115	48.7%	19	36.8%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-GRF
LOC81691	81691	genome.wustl.edu	37	16	20856135	20856135	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030941.2	+1	validated	p.K635T	0.401	81	0%	51	52.9%	3	100%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DNAH3	55567	genome.wustl.edu	37	16	20946732	20946732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017539.1	-1	provisional	p.V3979I	0.988	82	0%	110	54.5%	0	-	benign(0.007)	tolerated(0.21)	neutral(0.044)	HMMPfam_Dynein_heavy
DNAH3	55567	genome.wustl.edu	37	16	20986639	20986639	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017539.1	-1	provisional	p.T2725	0.000	313	0%	217	52.5%	1	100%	-	-	-	NULL
DNAH3	55567	genome.wustl.edu	37	16	20998661	20998661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017539.1	-1	provisional	p.T2331I	0.998	210	0%	175	39.4%	1	0%	possibly_damaging(0.61)	tolerated(0.51)	neutral(0.221)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21060952	21060952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017539.1	-1	provisional	p.F1467V	1.000	252	0%	80	45%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21080894	21080894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017539.1	-1	provisional	p.R1075C	0.001	237	0%	84	46.4%	0	-	possibly_damaging(0.66)	tolerated(0.1)	deleterious(0.519)	HMMPfam_DHC_N2
DNAH3	55567	genome.wustl.edu	37	16	21136606	21136606	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017539.1	-1	provisional	p.R432*	0.013	106	0%	74	51.4%	2	0%	-	-	-	NULL
ZP2	7783	genome.wustl.edu	37	16	21217065	21217065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003460.1	-1	reviewed	p.A172D	0.865	286	0%	125	45.6%	0	-	benign(0.013)	tolerated(0.3)	neutral(0.029)	NULL
PDZD9	255762	genome.wustl.edu	37	16	22000059	22000059	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173806.3	-1	validated	p.E27*	1.000	130	0%	77	48.1%	0	-	-	-	-	NULL
VWA3A	146177	genome.wustl.edu	37	16	22128491	22128491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173615.3	+1	validated	p.K328N	0.000	362	0%	163	49.7%	0	-	benign(0.008)	tolerated(0.38)	neutral(0.018)	NULL
EEF2K	29904	genome.wustl.edu	37	16	22256045	22256045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013302.3	+1	reviewed	p.R114Q	0.991	111	0%	35	68.6%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
EEF2K	29904	genome.wustl.edu	37	16	22295238	22295238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013302.3	+1	reviewed	p.A700V	1.000	33	0%	24	45.8%	20	55%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sel1,superfamily_SSF81901
CDR2	1039	genome.wustl.edu	37	16	22359078	22359078	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001802.1	-1	validated	p.D191	0.033	246	0%	80	12.5%	44	11.3%	-	-	-	NULL
COG7	91949	genome.wustl.edu	37	16	23409430	23409430	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153603.3	-1	reviewed	p.I608	0.989	117	0%	109	46.8%	28	46.4%	-	-	-	HMMPfam_COG7
GGA2	23062	genome.wustl.edu	37	16	23497460	23497460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015044.4	-1	reviewed	p.S225L	0.590	121	0%	71	46.5%	44	36.3%	possibly_damaging(0.907)	tolerated(0.46)	neutral(0.372)	HMMPfam_GAT,superfamily_SSF89009
ERN2	10595	genome.wustl.edu	37	16	23711868	23711868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033266.3	-1	validated	p.D554G	0.526	106	0%	51	47.1%	0	-	probably_damaging(0.981)	tolerated(0.35)	neutral(0.446)	superfamily_Protein kinase-like (PK-like)
PRKCB	5579	genome.wustl.edu	37	16	24104115	24104115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002738.6	+1	reviewed	p.R178I	1.000	158	0%	79	41.8%	1	0%	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PRKCB	5579	genome.wustl.edu	37	16	24104185	24104185	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002738.6	+1	reviewed	p.I201	1.000	265	0%	109	44%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PRKCB	5579	genome.wustl.edu	37	16	24135276	24135276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002738.6	+1	reviewed	p.V347M	1.000	414	0%	104	46.2%	1	0%	possibly_damaging(0.93)	deleterious(0.03)	deleterious(0.741)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKCB	5579	genome.wustl.edu	37	16	24192219	24192219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002738.6	+1	reviewed	p.F501L	1.000	167	0%	59	42.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRKCB	5579	genome.wustl.edu	37	16	24226083	24226083	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002738.6	+1	reviewed	p.F656	1.000	116	0.9%	113	34.5%	0	-	-	-	-	HMMSmart_SM00133,HMMPfam_Pkinase_C
CACNG3	10368	genome.wustl.edu	37	16	24372779	24372779	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006539.2	+1	reviewed	p.F181	0.997	196	0.5%	112	42%	0	-	-	-	-	HMMPfam_PMP22_Claudin
CACNG3	10368	genome.wustl.edu	37	16	24372898	24372898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006539.2	+1	reviewed	p.F221S	0.966	247	0%	84	44%	0	-	benign(0.312)	tolerated(0.24)	neutral(0.135)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24582752	24582752	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006910.4	+1	reviewed	p.K1455	0.990	80	0%	100	53%	32	46.8%	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24802265	24802265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014494.2	+1	reviewed	p.D768Y	1.000	49	0%	50	32%	1	0%	possibly_damaging(0.87)	deleterious(0.01)	deleterious(0.744)	NULL
ZKSCAN2	342357	genome.wustl.edu	37	16	25252049	25252049	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012981.4	-1	validated	p.I664	0.005	164	0%	93	41.9%	1	0%	-	-	-	NULL
HS3ST4	9951	genome.wustl.edu	37	16	26147193	26147193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000331351	+1	known	p.R332Q	1.000	95	0%	36	44.4%	0	-	possibly_damaging(0.626)	tolerated(0.27)	neutral(0.252)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
HS3ST4	9951	genome.wustl.edu	37	16	26147465	26147465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000331351	+1	known	p.D423N	0.994	153	0%	43	44.2%	0	-	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
JMJD5	79831	genome.wustl.edu	37	16	27226253	27226253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145348.1	+1	reviewed	p.S279L	1.000	141	0%	60	41.7%	0	-	benign(0.106)	tolerated(0.1)	neutral(0.294)	superfamily_SSF51197
NSMCE1	197370	genome.wustl.edu	37	16	27236549	27236549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145080.3	-1	validated	p.D244N	0.996	108	0%	41	48.8%	133	50.3%	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_SSF57850
GTF3C1	2975	genome.wustl.edu	37	16	27518332	27518332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001520.3	-1	validated	p.E463G	0.997	118	0%	48	37.5%	26	38.4%	possibly_damaging(0.614)	tolerated(0.14)	neutral(0.463)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27518472	27518472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001520.3	-1	validated	p.F416L	1.000	64	1.6%	48	45.8%	21	52.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_B-block_TFIIIC
KIAA0556	23247	genome.wustl.edu	37	16	27709696	27709696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015202.2	+1	validated	p.L330I	0.000	21	0%	15	40%	4	0%	benign(0.001)	tolerated(0.93)	-	NULL
XPO6	23214	genome.wustl.edu	37	16	28117402	28117402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015171.2	-1	provisional	p.A916T	0.234	48	0%	50	36%	115	46.9%	benign(0)	tolerated(0.12)	neutral(0.261)	superfamily_ARM repeat
XPO6	23214	genome.wustl.edu	37	16	28187399	28187399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015171.2	-1	provisional	p.M75I	1.000	96	0%	65	44.6%	27	66.6%	benign(0.256)	tolerated(0.11)	neutral(0.298)	HMMPfam_IBN_N,superfamily_ARM repeat
IL27	246778	genome.wustl.edu	37	16	28513424	28513424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145659.3	-1	reviewed	p.T112M	0.000	156	0%	29	55.2%	1	0%	probably_damaging(0.969)	tolerated(0.27)	neutral(0.445)	NULL
ATP2A1	487	genome.wustl.edu	37	16	28890824	28890824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173201.2	+1	reviewed	p.K47E	1.000	116	0%	84	50%	4	0%	benign(0.082)	tolerated(0.16)	neutral(0.066)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
ATP2A1	487	genome.wustl.edu	37	16	28895931	28895931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173201.2	+1	reviewed	p.A167T	0.002	19	0%	29	48.3%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ATP2A1	487	genome.wustl.edu	37	16	28909721	28909721	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173201.2	+1	reviewed	p.P571	0.015	36	0%	31	48.4%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
RABEP2	79874	genome.wustl.edu	37	16	28917048	28917048	+	Missense_Mutation	SNP	G	G	A	rs184144701	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024816.2	-1	validated	p.R490W	1.000	41	0%	30	46.7%	60	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rab5-bind
CD19	930	genome.wustl.edu	37	16	28947495	28947495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001770.5	+1	reviewed	p.R323I	0.998	220	0%	97	53.6%	4	0%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
LOC100289169	100289169	genome.wustl.edu	37	16	29063858	29063858	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343436.1	+1	model	p.E154*	0.314	19	0%	20	35%	0	-	-	-	-	NULL
RRN3P2	653390	genome.wustl.edu	37	16	29096069	29096069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000415221	+1	known	p.I151T	1.000	28	0%	53	45.3%	15	0%	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_RRN3
MVP	9961	genome.wustl.edu	37	16	29848155	29848155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005115.3	+1	reviewed	p.D262V	0.717	13	0%	19	47.4%	30	10%	unknown(0)	-	-	HMMPfam_Vault
ZNF48	197407	genome.wustl.edu	37	16	30409815	30409815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152652.1	+1	provisional	p.R415Q	0.982	10	0%	13	46.2%	34	61.7%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ZNF48	197407	genome.wustl.edu	37	16	30409982	30409982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152652.1	+1	provisional	p.R471C	0.998	16	0%	17	52.9%	37	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
STX1B	112755	genome.wustl.edu	37	16	31008077	31008077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052874.3	-1	validated	p.T155I	1.000	47	0%	19	42.1%	0	-	benign(0.107)	deleterious(0.02)	neutral(0.392)	superfamily_t-snare proteins
ZNF646	9726	genome.wustl.edu	37	16	31087727	31087727	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014699.3	+1	validated	p.E28*	0.997	27	0%	45	53.3%	7	28.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF646	9726	genome.wustl.edu	37	16	31088502	31088502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014699.3	+1	validated	p.R286Q	0.980	35	0%	74	43.2%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ITGAM	3684	genome.wustl.edu	37	16	31284734	31284734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000632.3	+1	reviewed	p.K251N	1.000	217	0%	72	44.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ITGAM	3684	genome.wustl.edu	37	16	31309132	31309132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000632.3	+1	reviewed	p.A522T	1.000	260	0%	48	45.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318
ITGAM	3684	genome.wustl.edu	37	16	31332855	31332855	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000632.3	+1	reviewed	p.E637*	0.136	316	0%	169	47.9%	0	-	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGAM	3684	genome.wustl.edu	37	16	31341692	31341692	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000632.3	+1	reviewed	p.E1042*	0.000	239	0%	43	16.3%	5	0%	-	-	-	NULL
ITGAD	3681	genome.wustl.edu	37	16	31435470	31435470	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005353.2	+1	validated	p.F1069	0.023	86	0%	109	55%	1	0%	-	-	-	NULL
ZNF843	283933	genome.wustl.edu	37	16	31448151	31448151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136509.1	-1	provisional	p.A7D	0.119	24	0%	24	58.3%	0	-	unknown(0)	-	-	NULL
TGFB1I1	7041	genome.wustl.edu	37	16	31485256	31485256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042454.2	+1	reviewed	p.R95W	1.000	17	0%	40	42.5%	10	30%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLC5A2	6524	genome.wustl.edu	37	16	31497052	31497052	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003041.3	+1	reviewed	p.A102	0.983	30	0%	20	40%	0	-	-	-	-	HMMPfam_SSF
SLC5A2	6524	genome.wustl.edu	37	16	31500022	31500022	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003041.3	+1	reviewed	p.T403	0.000	15	0%	18	55.6%	0	-	-	-	-	HMMPfam_SSF
ZNF267	10308	genome.wustl.edu	37	16	31926849	31926849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003414.4	+1	validated	p.K427E	0.948	82	0%	56	32.1%	7	57.1%	possibly_damaging(0.546)	deleterious(0.01)	deleterious(0.591)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000214627	0	genome.wustl.edu	37	16	31987272	31987272	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398685	+1	known	p.S25	0.998	71	0%	46	43.5%	0	-	-	-	-	NULL
LOC729264	729264	genome.wustl.edu	37	16	32264967	32264967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001133674.2	+1	model	p.R98Q	0.017	361	0%	203	24.1%	0	-	-	-	-	NULL
IGHV3OR16-8	388255	genome.wustl.edu	37	16	33647517	33647517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000438532	-1	known	p.G28E	0.971	136	0%	98	62.2%	0	-	possibly_damaging(0.759)	deleterious(0)	deleterious(0.726)	HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000214581	0	genome.wustl.edu	37	16	34681372	34681372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398617	-1	known	p.S158Y	0.055	8	0.000	7	0.571	0	-	unknown(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C16orf87	388272	genome.wustl.edu	37	16	46836981	46836981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001436.2	-1	predicted	p.E116D	0.999	149	0%	91	37.4%	33	42.4%	possibly_damaging(0.892)	tolerated(0.35)	neutral(0.372)	NULL
NETO2	81831	genome.wustl.edu	37	16	47162359	47162359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018092.3	-1	reviewed	p.R120C	1.000	97	0%	81	12.3%	40	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ITFG1	81533	genome.wustl.edu	37	16	47294474	47294474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030790.3	-1	provisional	p.F401L	1.000	247	0%	75	54.7%	32	93.7%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_SSF69318
ITFG1	81533	genome.wustl.edu	37	16	47294542	47294542	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030790.3	-1	provisional	p.R379*	0.987	278	0%	96	46.9%	27	0%	-	-	-	superfamily_SSF69318
ITFG1	81533	genome.wustl.edu	37	16	47462744	47462744	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030790.3	-1	provisional	p.F209C	1.000	190	0%	122	45.9%	20	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITFG1	81533	genome.wustl.edu	37	16	47487979	47487979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030790.3	-1	provisional	p.N124K	0.954	86	0%	79	43%	20	15%	benign(0.001)	tolerated(0.53)	neutral(0.007)	superfamily_SSF69318
PHKB	5257	genome.wustl.edu	37	16	47733200	47733200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000293.2	+1	reviewed	p.L1069V	1.000	236	0%	90	36.7%	98	46.9%	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	HMMPfam_PHK_AB
ABCC12	94160	genome.wustl.edu	37	16	48120699	48120699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033226.2	-1	reviewed	p.D1223N	0.966	128	0%	59	55.9%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC12	94160	genome.wustl.edu	37	16	48121986	48121986	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033226.2	-1	reviewed	p.S1162	0.000	57	0%	49	34.7%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC12	94160	genome.wustl.edu	37	16	48130769	48130769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033226.2	-1	reviewed	p.R1028I	0.305	179	0%	93	43%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC12	94160	genome.wustl.edu	37	16	48175259	48175259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033226.2	-1	reviewed	p.R94Q	0.818	196	0%	56	35.7%	0	-	benign(0.015)	tolerated(0.55)	neutral(0.007)	NULL
ABCC12	94160	genome.wustl.edu	37	16	48180266	48180266	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033226.2	-1	reviewed	p.R24	0.864	391	0%	69	11.6%	0	-	-	-	-	NULL
ABCC11	85320	genome.wustl.edu	37	16	48256649	48256649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032583.3	-1	reviewed	p.E213K	0.509	225	0%	74	44.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
CBLN1	869	genome.wustl.edu	37	16	49313398	49313398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004352.3	-1	validated	p.A167S	1.000	61	0%	78	41%	0	-	benign(0.245)	deleterious(0)	deleterious(0.470)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
ZNF423	23090	genome.wustl.edu	37	16	49672377	49672377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015069.2	-1	reviewed	p.R229H	1.000	13	0%	26	53.8%	21	52.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NOD2	64127	genome.wustl.edu	37	16	50757289	50757289	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022162.1	+1	reviewed	p.E959A	0.998	210	0%	84	38.1%	0	-	probably_damaging(0.994)	tolerated(0.38)	deleterious(0.470)	HMMSmart_SM00368,superfamily_RNI-like
CYLD	1540	genome.wustl.edu	37	16	50783614	50783614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015247.2	+1	reviewed	p.S2N	1.000	56	0%	44	38.6%	8	12.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
SALL1	6299	genome.wustl.edu	37	16	51173588	51173588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002968.2	-1	reviewed	p.D849Y	1.000	108	0%	65	52.3%	39	41%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
CHD9	80205	genome.wustl.edu	37	16	53190782	53190782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025134.4	+1	validated	p.S261P	1.000	98	0%	83	37.3%	1	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
CHD9	80205	genome.wustl.edu	37	16	53358587	53358587	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025134.4	+1	validated	p.F2809C	1.000	207	0%	79	45.6%	3	66.6%	unknown(0)	tolerated(0.17)	-	NULL
AKTIP	64400	genome.wustl.edu	37	16	53532453	53532453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012398.1	-1	reviewed	p.R33Q	1.000	193	0%	147	43.5%	21	23.8%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	NULL
FTO	79068	genome.wustl.edu	37	16	53922795	53922795	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080432.2	+1	reviewed	p.K391Q	0.581	531	0%	109	13.8%	44	9%	benign(0.167)	tolerated(0.27)	neutral(0.049)	NULL
MMP2	4313	genome.wustl.edu	37	16	55530924	55530924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004530.4	+1	reviewed	p.I520T	0.999	182	0%	60	45%	221	27.6%	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
LPCAT2	54947	genome.wustl.edu	37	16	55584993	55584993	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017839.4	+1	reviewed	p.Q398H	1.000	201	0%	83	44.6%	41	58.5%	benign(0.022)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
SLC6A2	6530	genome.wustl.edu	37	16	55703603	55703603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001043.3	+1	reviewed	p.F134S	1.000	38	0%	19	42.1%	0	-	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	HMMPfam_SNF
CES1	1066	genome.wustl.edu	37	16	55850856	55850856	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001025195.1	-1	reviewed	p.L309V	0.070	70	0%	105	42.9%	1	0%	benign(0.026)	tolerated(0.19)	neutral(0.051)	HMMPfam_COesterase,superfamily_SSF53474
AMFR	267	genome.wustl.edu	37	16	56419833	56419833	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144.4	-1	reviewed	p.M460L	0.998	160	0%	44	43.2%	67	56.7%	benign(0.413)	tolerated(0.26)	neutral(0.168)	HMMPfam_CUE,HMMSmart_SM00546
BBS2	583	genome.wustl.edu	37	16	56534772	56534772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031885.3	-1	reviewed	p.R464I	1.000	332	0%	63	50.8%	26	50%	possibly_damaging(0.816)	deleterious(0.02)	deleterious(0.692)	NULL
CCDC135	84229	genome.wustl.edu	37	16	57756994	57756994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032269.5	+1	validated	p.D497N	0.001	15	0%	42	52.4%	0	-	benign(0.059)	tolerated(0.6)	neutral(0.009)	NULL
CCDC135	84229	genome.wustl.edu	37	16	57765082	57765082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032269.5	+1	validated	p.K846T	1.000	22	0%	81	48.1%	0	-	possibly_damaging(0.883)	deleterious(0.01)	deleterious(0.750)	NULL
ZNF319	57567	genome.wustl.edu	37	16	58030752	58030752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020807.1	-1	provisional	p.F473S	1.000	15	0%	14	57.1%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
CCDC113	29070	genome.wustl.edu	37	16	58296358	58296358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014157.3	+1	validated	p.L233I	0.849	236	0%	96	58.3%	4	100%	probably_damaging(0.991)	tolerated(0.35)	neutral(0.465)	NULL
CCDC113	29070	genome.wustl.edu	37	16	58296370	58296370	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014157.3	+1	validated	p.E237*	1.000	221	0%	94	38.3%	7	0%	-	-	-	NULL
CNOT1	23019	genome.wustl.edu	37	16	58565906	58565906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016284.3	-1	validated	p.R2045W	1.000	135	0%	79	44.3%	34	32.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Not1
CNOT1	23019	genome.wustl.edu	37	16	58573716	58573716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016284.3	-1	validated	p.R1650*	1.000	111	0%	74	52.7%	51	33.3%	-	-	-	NULL
CNOT1	23019	genome.wustl.edu	37	16	58575487	58575487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016284.3	-1	validated	p.E1573A	1.000	115	0%	49	53.1%	79	62%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58580367	58580367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016284.3	-1	validated	p.K1288N	1.000	215	0%	94	46.8%	52	25%	possibly_damaging(0.894)	tolerated(0.06)	deleterious(0.674)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58615420	58615420	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016284.3	-1	validated	e10-1	1.000	54	0%	108	46.3%	4	100%	-	-	-	-
CDH8	1006	genome.wustl.edu	37	16	61761024	61761024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001796.2	-1	reviewed	p.L504V	1.000	214	0%	30	46.7%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMPfam_Cadherin,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	62055147	62055147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001796.2	-1	reviewed	p.R54L	1.000	175	0%	94	45.7%	0	-	possibly_damaging(0.578)	tolerated(0.26)	neutral(0.233)	NULL
ENSG00000250685	0	genome.wustl.edu	37	16	65319049	65319049	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000505989	-1	known	NULL	0.538	11	0.000	7	1.000	0	-	-	-	-	-
TK2	7084	genome.wustl.edu	37	16	66582907	66582907	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004614.4	-1	reviewed	p.E86*	0.998	78	0%	370	44.9%	4	0%	-	-	-	NULL
NAE1	8883	genome.wustl.edu	37	16	66857470	66857470	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003905.3	-1	reviewed	p.E95*	1.000	77	0%	216	41.2%	41	19.5%	-	-	-	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins
C16orf70	80262	genome.wustl.edu	37	16	67173923	67173923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025187.3	+1	provisional	p.R233Q	1.000	95	0%	118	39.8%	14	50%	benign(0.174)	tolerated(0.97)	neutral(0.016)	HMMPfam_UPF0183
E2F4	1874	genome.wustl.edu	37	16	67231533	67231533	+	Silent	SNP	C	C	A	rs189616961	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001950.3	+1	reviewed	p.I355	1.000	70	0%	159	48.4%	74	44.5%	-	-	-	NULL
KCTD19	146212	genome.wustl.edu	37	16	67325284	67325284	+	Silent	SNP	G	G	T	rs188969016	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100915.1	-1	provisional	p.I831	0.996	125	0%	60	41.7%	0	-	-	-	-	NULL
KCTD19	146212	genome.wustl.edu	37	16	67327539	67327539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100915.1	-1	provisional	p.D709G	1.000	142	0%	77	50.6%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
KCTD19	146212	genome.wustl.edu	37	16	67331520	67331520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100915.1	-1	provisional	p.E345K	0.994	128	0%	131	42.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LRRC36	55282	genome.wustl.edu	37	16	67381468	67381468	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018296.5	+1	validated	p.E154D	1.000	105	0%	88	39.8%	0	-	benign(0.009)	tolerated(0.05)	neutral(0.346)	NULL
CTCF	10664	genome.wustl.edu	37	16	67645069	67645069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006565.2	+1	reviewed	p.E112*	1.000	86	0%	77	57.1%	46	39.1%	-	-	-	NULL
EDC4	23644	genome.wustl.edu	37	16	67917981	67917981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014329.3	+1	validated	p.N1379S	1.000	56	0%	29	13.8%	78	52.5%	benign(0.008)	tolerated(0.77)	neutral(0.001)	NULL
NFATC3	4775	genome.wustl.edu	37	16	68225256	68225256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173165.1	+1	reviewed	p.S895Y	1.000	160	0%	123	45.5%	25	56%	possibly_damaging(0.644)	deleterious(0.01)	deleterious(0.631)	NULL
ESRP2	80004	genome.wustl.edu	37	16	68267737	68267737	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024939.2	-1	validated	p.E164*	1.000	54	0%	57	49.1%	8	12.5%	-	-	-	NULL
SLC7A6	9057	genome.wustl.edu	37	16	68331170	68331170	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076785.1	+1	validated	p.F496C	0.998	167	0%	99	41.4%	2	50%	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
ZFP90	146198	genome.wustl.edu	37	16	68598492	68598492	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000327567	+1	known	p.E74*	1.000	95	0%	48	50%	18	61.1%	-	-	-	NULL
CDH1	999	genome.wustl.edu	37	16	68853288	68853288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004360.3	+1	reviewed	p.K557N	1.000	221	0%	64	37.5%	172	31.3%	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
NFAT5	10725	genome.wustl.edu	37	16	69703968	69703968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138713.2	+1	reviewed	p.K486N	0.999	42	0%	66	34.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
DDX19A	55308	genome.wustl.edu	37	16	70384467	70384467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018332.3	+1	provisional	p.N22S	0.926	367	0%	475	45.1%	15	46.6%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70863632	70863632	+	Silent	SNP	G	G	A	rs112196683		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032821.2	-1	validated	p.G4666	0.007	125	0%	74	31.1%	2	50%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70916794	70916794	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032821.2	-1	validated	p.F3327	0.929	370	0%	113	36.3%	0	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70926344	70926344	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032821.2	-1	validated	p.E3112*	0.828	994	0%	614	17.8%	1	0%	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70955065	70955065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032821.2	-1	validated	p.S2404Y	0.759	180	0%	163	39.3%	1	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
FTSJD1	55783	genome.wustl.edu	37	16	71319634	71319634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099642.1	-1	validated	p.L64I	1.000	206	0%	115	45.2%	4	75%	benign(0.01)	tolerated(0.2)	neutral(0.050)	NULL
CALB2	794	genome.wustl.edu	37	16	71416637	71416637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001740.3	+1	reviewed	p.D120N	1.000	909	0.2%	161	46.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
ZNF23	7571	genome.wustl.edu	37	16	71482273	71482273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145911.1	-1	provisional	p.R552I	0.998	336	0%	174	51.1%	11	45.4%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF23	7571	genome.wustl.edu	37	16	71482923	71482923	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145911.1	-1	provisional	p.P335	0.985	192	0%	119	38.7%	8	37.5%	-	-	-	superfamily_SSF57667
ZNF23	7571	genome.wustl.edu	37	16	71483281	71483281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145911.1	-1	provisional	p.R216I	1.000	188	0%	119	13.4%	7	14.2%	probably_damaging(0.976)	deleterious(0.03)	deleterious(0.782)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF23	7571	genome.wustl.edu	37	16	71483306	71483306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145911.1	-1	provisional	p.N208H	0.001	166	0%	95	44.2%	7	42.8%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF23	7571	genome.wustl.edu	37	16	71483770	71483770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145911.1	-1	provisional	p.N53S	0.002	73	0%	64	35.9%	4	25%	benign(0.232)	tolerated(0.73)	neutral(0.025)	NULL
ZNF19	7567	genome.wustl.edu	37	16	71509099	71509099	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006961.3	-1	reviewed	p.E451*	0.200	126	0.8%	71	16.9%	0	-	-	-	-	NULL
CHST4	10164	genome.wustl.edu	37	16	71571459	71571459	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005769.2	+1	reviewed	p.F293	0.000	146	0%	44	27.3%	0	-	-	-	-	superfamily_SSF52540
MARVELD3	91862	genome.wustl.edu	37	16	71674334	71674334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017967.2	+1	validated	p.L213I	1.000	186	0%	139	41.7%	30	33.3%	possibly_damaging(0.892)	tolerated(0.11)	deleterious(0.623)	HMMPfam_MARVEL
AP1G1	164	genome.wustl.edu	37	16	71782272	71782272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001030007.1	-1	reviewed	p.D506N	1.000	118	0%	83	49.4%	19	57.8%	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP1G1	164	genome.wustl.edu	37	16	71790001	71790001	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001030007.1	-1	reviewed	p.E387*	1.000	132	0%	126	44.4%	8	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
ATXN1L	342371	genome.wustl.edu	37	16	71883719	71883719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137675.2	+1	validated	p.M26V	1.000	75	0%	55	40%	16	56.2%	benign(0.014)	tolerated(0.47)	neutral(0.011)	NULL
ZNF821	55565	genome.wustl.edu	37	16	71898859	71898859	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017530.1	-1	provisional	p.E45*	1.000	310	0%	175	42.9%	20	20%	-	-	-	NULL
IST1	9798	genome.wustl.edu	37	16	71949586	71949586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014761.2	+1	provisional	p.L15V	1.000	84	0%	167	46.7%	71	57.7%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
PKD1L3	342372	genome.wustl.edu	37	16	72011246	72011246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000335106	-1	known	p.D550Y	0.838	332	0%	250	17.6%	0	-	-	-	-	NULL
PKD1L3	342372	genome.wustl.edu	37	16	72020176	72020176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000335106	-1	known	p.H260N	0.001	221	0%	130	33.8%	0	-	-	-	-	NULL
PKD1L3	342372	genome.wustl.edu	37	16	72024196	72024196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000335106	-1	known	p.P190S	0.000	168	0%	125	47.2%	0	-	-	-	-	NULL
HP	3240	genome.wustl.edu	37	16	72092223	72092223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005143.3	+1	reviewed	p.K112N	0.003	352	0%	106	17.9%	1	0%	benign(0.007)	tolerated(0.57)	neutral(0.006)	HMMSmart_CCP,superfamily_Complement_control_module
HPR	3250	genome.wustl.edu	37	16	72110692	72110692	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020995.3	+1	validated	p.T253	0.002	196	0%	63	42.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZFHX3	463	genome.wustl.edu	37	16	72830871	72830871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006885.3	-1	reviewed	p.G1904S	0.004	350	0%	125	37.6%	18	44.4%	unknown(0)	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72993329	72993329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006885.3	-1	reviewed	p.K239R	1.000	53	1.9%	61	18%	4	0%	unknown(0)	-	-	NULL
WDR59	79726	genome.wustl.edu	37	16	74937847	74937847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030581.3	-1	validated	p.R622W	1.000	94	1.1%	32	43.8%	14	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR59	79726	genome.wustl.edu	37	16	74949884	74949884	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030581.3	-1	validated	p.E370*	1.000	318	0%	169	36.7%	19	31.5%	-	-	-	NULL
ZFP1	162239	genome.wustl.edu	37	16	75203971	75203971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153688.2	+1	validated	p.E321D	1.000	72	0%	63	39.7%	5	60%	benign(0.119)	tolerated(0.09)	neutral(0.306)	superfamily_C2H2 and C2HC zinc fingers
KARS	3735	genome.wustl.edu	37	16	75669973	75669973	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130089.1	-1	reviewed	p.F197C	1.000	85	0%	115	50.4%	104	51.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
CNTNAP4	85445	genome.wustl.edu	37	16	76483713	76483713	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033401.3	+1	reviewed	p.S343*	0.996	78	0%	55	47.3%	0	-	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76486408	76486408	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138994.3	+1	validated	p.N286H	1.000	170	0%	116	40.5%	0	-	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
CNTNAP4	85445	genome.wustl.edu	37	16	76569632	76569632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138994.3	+1	validated	p.F909L	1.000	77	0%	31	48.4%	0	-	possibly_damaging(0.508)	deleterious(0.01)	deleterious(0.576)	HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases
CNTNAP4	85445	genome.wustl.edu	37	16	76572194	76572194	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033401.3	+1	reviewed	p.A1059V	1.000	69	0%	41	43.9%	0	-	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76573742	76573742	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138994.3	+1	validated	p.F1043C	0.996	54	0%	39	43.6%	0	-	possibly_damaging(0.66)	tolerated(0.18)	neutral(0.289)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CLEC3A	10143	genome.wustl.edu	37	16	78064372	78064372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005752.3	+1	validated	p.K76N	1.000	32	0%	19	52.6%	0	-	benign(0.202)	tolerated(0.35)	neutral(0.040)	HMMSmart_CLECT,superfamily_C-type_lectin_fold
CDYL2	124359	genome.wustl.edu	37	16	80719009	80719009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152342.2	-1	validated	p.D14E	1.000	33	3%	18	38.9%	4	50%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Chromo,HMMSmart_CHROMO,superfamily_Chromodomain-like
ATMIN	23300	genome.wustl.edu	37	16	81078026	81078026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015251.2	+1	validated	p.F641L	1.000	38	0%	62	53.2%	48	50%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
C16orf46	123775	genome.wustl.edu	37	16	81095298	81095298	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152337.2	-1	validated	p.S219*	0.002	41	0%	31	38.7%	3	66.6%	-	-	-	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81222551	81222551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076780.1	-1	reviewed	p.P575H	1.000	137	0%	105	14.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCMO1	53630	genome.wustl.edu	37	16	81324059	81324059	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017429.2	+1	reviewed	p.V507	0.000	121	0%	76	42.1%	2	50%	-	-	-	HMMPfam_RPE65
CMIP	80790	genome.wustl.edu	37	16	81712033	81712033	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198390.2	+1	validated	p.V396	0.999	23	0%	28	50%	30	40%	-	-	-	NULL
CDH13	1012	genome.wustl.edu	37	16	83251057	83251057	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001257.3	+1	reviewed	p.V197	1.000	123	0%	63	44.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH13	1012	genome.wustl.edu	37	16	83378579	83378579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001257.3	+1	reviewed	p.Y250C	0.999	77	0%	17	35.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin
CDH13	1012	genome.wustl.edu	37	16	83636176	83636176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001257.3	+1	reviewed	p.S360A	0.996	155	0%	56	51.8%	1	0%	benign(0.001)	tolerated(0.83)	neutral(0.001)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
MLYCD	23417	genome.wustl.edu	37	16	83948685	83948685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012213.2	+1	reviewed	p.S358L	0.036	113	0%	128	50.8%	12	33.3%	benign(0.017)	tolerated(0.28)	neutral(0.032)	HMMPfam_MCD
USP10	9100	genome.wustl.edu	37	16	84801926	84801926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005153.2	+1	reviewed	p.E654*	1.000	106	0%	84	44%	54	7.4%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
CRISPLD2	83716	genome.wustl.edu	37	16	84872300	84872300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031476.3	+1	validated	p.R67W	1.000	41	0%	18	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
FAM92B	339145	genome.wustl.edu	37	16	85135934	85135934	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198491.1	-1	predicted	e7-1	1.000	36	0%	62	40.3%	0	-	-	-	-	-
MTHFSD	64779	genome.wustl.edu	37	16	86580183	86580183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022764.2	-1	validated	p.V141I	0.997	54	0%	64	59.4%	7	42.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_5-FTHF_cyc-lig,superfamily_SSF100950
ZCCHC14	23174	genome.wustl.edu	37	16	87451144	87451144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015144.2	-1	validated	p.Q298H	0.734	90	0%	87	25.3%	4	75%	unknown(0)	deleterious(0)	-	HMMPfam_SAM_1,superfamily_SAM/Pointed domain
JPH3	57338	genome.wustl.edu	37	16	87717829	87717829	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020655.2	+1	reviewed	p.I414	1.000	16	0%	29	37.9%	0	-	-	-	-	NULL
ZNF469	84627	genome.wustl.edu	37	16	88498432	88498432	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127464.1	+1	reviewed	p.L1490	0.002	20	0%	71	49.3%	0	-	-	-	-	NULL
SNAI3	333929	genome.wustl.edu	37	16	88747780	88747780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178310.3	-1	validated	p.L140P	0.000	10	0%	13	61.5%	3	0%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89349853	89349853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013275.4	-1	validated	p.S1033G	0.929	327	0.3%	431	37.8%	35	54.2%	benign(0.001)	tolerated(0.57)	neutral(0.006)	superfamily_Ankyrin repeat
ANKRD11	29123	genome.wustl.edu	37	16	89351717	89351717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000378332	-1	known	p.R424L	0.015	47	0%	102	50%	27	40.7%	unknown(0)	deleterious(0)	-	NULL
TUBB3	10381	genome.wustl.edu	37	16	90001203	90001203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006086.2	+1	validated	p.S115L	1.000	31	0%	59	42.4%	44	52.2%	possibly_damaging(0.469)	deleterious(0.01)	deleterious(0.559)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
GAS8	2622	genome.wustl.edu	37	16	90106785	90106785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001481.2	+1	reviewed	p.K363N	1.000	45	0%	27	44.4%	68	48.5%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	NULL
FAM157C	100132055	genome.wustl.edu	37	16	90167862	90167862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001714162.2	+1	model	p.K22R	0.040	378	0%	306	18%	0	-	-	-	-	NULL
FAM157C	100132055	genome.wustl.edu	37	16	90171202	90171202	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001714162.2	+1	model	p.T170	0.004	105	0%	89	18%	0	-	-	-	-	NULL
C17orf97	400566	genome.wustl.edu	37	17	263106	263106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013672.4	+1	validated	p.E158K	0.000	142	0%	123	44.7%	13	38.4%	probably_damaging(0.979)	tolerated(0.1)	deleterious(0.708)	NULL
GEMIN4	50628	genome.wustl.edu	37	17	648416	648416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015721.2	-1	reviewed	p.A956V	0.001	9	0.000	20	0.350	31	54.8%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
MYO1C	4641	genome.wustl.edu	37	17	1377933	1377933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080779.1	-1	reviewed	p.E590K	1.000	29	0%	30	50%	28	35.7%	benign(0.294)	tolerated(0.13)	neutral(0.344)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRPF8	10594	genome.wustl.edu	37	17	1577887	1577887	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006445.3	-1	reviewed	p.L1050	1.000	83	0%	88	44.3%	31	83.8%	-	-	-	HMMPfam_RRM_4
PRPF8	10594	genome.wustl.edu	37	17	1582175	1582175	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006445.3	-1	reviewed	p.E534*	1.000	100	0%	131	46.6%	26	7.6%	-	-	-	HMMPfam_PROCN
WDR81	124997	genome.wustl.edu	37	17	1631710	1631710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000409644	+1	known	p.E1153K	1.000	12	0%	32	43.8%	8	62.5%	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	superfamily_WD40 repeat-like
SMG6	23293	genome.wustl.edu	37	17	2202611	2202611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017575.4	-1	validated	p.T479N	1.000	27	0%	25	44%	11	45.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SRR	63826	genome.wustl.edu	37	17	2218978	2218978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021947.1	+1	provisional	p.L42I	1.000	293	0%	197	41.1%	9	0%	possibly_damaging(0.45)	tolerated(0.12)	neutral(0.408)	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
TSR1	55720	genome.wustl.edu	37	17	2228029	2228029	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018128.4	-1	validated	p.K705N	1.000	112	0%	121	37.2%	50	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF663
RAP1GAP2	23108	genome.wustl.edu	37	17	2901655	2901655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015085.4	+1	reviewed	p.E395D	0.397	80	0%	93	57%	9	33.3%	benign(0)	tolerated(1)	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
RAP1GAP2	23108	genome.wustl.edu	37	17	2934292	2934292	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015085.4	+1	reviewed	p.A728	1.000	108	0%	61	47.5%	10	20%	-	-	-	NULL
OR1A1	8383	genome.wustl.edu	37	17	3119584	3119584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014565.2	+1	validated	p.V224F	0.719	361	0%	83	36.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
OR3A2	4995	genome.wustl.edu	37	17	3181497	3181497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002551.3	-1	validated	p.K245E	0.998	142	0.7%	77	45.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_7tm_1,superfamily_SSF81321
OR3A1	4994	genome.wustl.edu	37	17	3195115	3195115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002550.2	-1	validated	p.F254L	0.789	131	0%	64	42.2%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_7tm_1,superfamily_SSF81321
OR3A1	4994	genome.wustl.edu	37	17	3195594	3195594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002550.2	-1	validated	p.V95I	0.000	162	0%	50	50%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
ASPA	443	genome.wustl.edu	37	17	3392582	3392582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000049.2	+1	reviewed	p.Q194K	1.000	125	0%	96	40.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_AstE_AspA
TRPV1	7442	genome.wustl.edu	37	17	3493236	3493236	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018727.5	-1	reviewed	p.T303	0.973	129	0%	49	44.9%	2	50%	-	-	-	superfamily_Ankyrin repeat
P2RX5	5026	genome.wustl.edu	37	17	3591956	3591956	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002561.2	-1	reviewed	p.K284T	0.003	57	0%	166	51.2%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_P2X_receptor
P2RX5	5026	genome.wustl.edu	37	17	3592047	3592047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002561.2	-1	reviewed	p.V254M	1.000	52	0%	116	43.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR
ITGAE	3682	genome.wustl.edu	37	17	3680856	3680856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002208.4	-1	reviewed	p.D45Y	0.995	51	0%	31	35.5%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	superfamily_SSF69318
C17orf85	55421	genome.wustl.edu	37	17	3719517	3719517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001114118.1	-1	provisional	p.R453Q	1.000	248	0%	253	40.7%	48	39.5%	benign(0.233)	deleterious(0)	neutral(0.468)	NULL
CAMKK1	84254	genome.wustl.edu	37	17	3789001	3789001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000381769	-1	known	p.R21I	0.000	19	0%	19	42.1%	0	-	unknown(0)	-	-	NULL
P2RX1	5023	genome.wustl.edu	37	17	3819478	3819478	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002558.2	-1	reviewed	p.F14	0.744	11	0%	13	46.2%	1	0%	-	-	-	HMMPfam_P2X_receptor
ZZEF1	23140	genome.wustl.edu	37	17	3923012	3923012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015113.3	-1	validated	p.E2486K	1.000	281	0%	91	44%	18	11.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYB5D2	124936	genome.wustl.edu	37	17	4053270	4053270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144611.3	+1	validated	p.E112D	0.999	245	0%	93	51.6%	17	29.4%	benign(0.009)	tolerated(0.62)	neutral(0.005)	HMMPfam_Cyt-b5,superfamily_Cyt_B5
ANKFY1	51479	genome.wustl.edu	37	17	4098375	4098375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016376.3	-1	validated	p.E424K	1.000	109	0%	39	28.2%	15	46.6%	benign(0.418)	tolerated(0.14)	neutral(0.385)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SPNS2	124976	genome.wustl.edu	37	17	4440216	4440216	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001124758.1	+1	provisional	p.P543	0.001	38	0%	13	30.8%	3	66.6%	-	-	-	NULL
MYBBP1A	10514	genome.wustl.edu	37	17	4455766	4455766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105538.1	-1	validated	p.F239L	0.951	28	0%	48	37.5%	25	44%	benign(0.287)	tolerated(0.89)	neutral(0.088)	HMMPfam_DNA_pol_phi,superfamily_ARM-type_fold
TM4SF5	9032	genome.wustl.edu	37	17	4685923	4685923	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003963.2	+1	reviewed	p.F128	0.897	66	0%	37	40.5%	0	-	-	-	-	HMMPfam_L6_membrane
ENSG00000249874	0	genome.wustl.edu	37	17	4692742	4692742	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000510649	-1	known	NULL	0.000	6	0.000	11	0.636	1	0%	-	-	-	-
CHRNE	1145	genome.wustl.edu	37	17	4805931	4805931	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000080.3	-1	reviewed	p.T58	1.000	138	0.7%	180	45%	1	0%	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
RNF167	26001	genome.wustl.edu	37	17	4845732	4845732	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015528.1	+1	provisional	p.R88*	1.000	58	0%	52	57.7%	56	12.5%	-	-	-	HMMPfam_PA,superfamily_SSF52025
USP6	9098	genome.wustl.edu	37	17	5036227	5036227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004505.2	+1	validated	p.R73Q	0.998	118	0%	208	34.1%	0	-	unknown(0)	deleterious(0)	-	superfamily_Ypt/Rab-GAP domain of gyp1p
RABEP1	9135	genome.wustl.edu	37	17	5235304	5235304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004703.4	+1	validated	p.R75Q	1.000	225	0%	128	37.5%	19	57.8%	benign(0.033)	tolerated(0.36)	neutral(0.022)	NULL
RABEP1	9135	genome.wustl.edu	37	17	5250091	5250091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004703.4	+1	validated	p.E219*	1.000	99	0%	119	34.5%	4	50%	-	-	-	NULL
RABEP1	9135	genome.wustl.edu	37	17	5250208	5250208	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004703.4	+1	validated	p.E258*	1.000	115	0.9%	113	44.2%	10	20%	-	-	-	NULL
RABEP1	9135	genome.wustl.edu	37	17	5268524	5268524	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004703.4	+1	validated	p.S592	0.000	177	0%	84	46.4%	7	42.8%	-	-	-	HMMPfam_Rabaptin
NLRP1	22861	genome.wustl.edu	37	17	5463166	5463166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033004.3	-1	reviewed	p.L284I	0.756	395	0%	314	43.3%	1	100%	probably_damaging(0.984)	deleterious(0.05)	deleterious(0.776)	NULL
WSCD1	23302	genome.wustl.edu	37	17	5984205	5984205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015253.1	+1	validated	p.R76Q	0.050	4	0.000	10	0.500	0	-	benign(0.389)	tolerated(0.36)	neutral(0.144)	NULL
AIPL1	23746	genome.wustl.edu	37	17	6329030	6329030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014336.3	-1	reviewed	p.R302H	0.987	141	0%	46	89.1%	0	-	benign(0.152)	tolerated(0.08)	neutral(0.314)	superfamily_SSF48452
TEKT1	83659	genome.wustl.edu	37	17	6718555	6718555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053285.1	-1	reviewed	p.D186Y	0.984	573	0.2%	159	44.7%	0	-	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	HMMPfam_Tektin
BCL6B	255877	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181844.3	+1	validated	p.238in_frame_insS	0.939:0.528	-	-	-	-	-	-	-	-	-	NULL
PHF23	79142	genome.wustl.edu	37	17	7139564	7139564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024297.2	-1	validated	p.R228W	0.142	89	0%	130	44.6%	62	41.9%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SLC2A4	6517	genome.wustl.edu	37	17	7189830	7189830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042.2	+1	reviewed	p.T471I	1.000	211	0%	134	47.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
NEURL4	84461	genome.wustl.edu	37	17	7228681	7228681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032442.2	-1	validated	p.R493Q	1.000	42	0%	44	47.7%	12	41.6%	benign(0.098)	deleterious(0.04)	neutral(0.356)	NULL
ACAP1	9744	genome.wustl.edu	37	17	7247050	7247050	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014716.3	+1	validated	p.K185T	1.000	133	0%	161	32.3%	3	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
ACAP1	9744	genome.wustl.edu	37	17	7252458	7252458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014716.3	+1	validated	p.A608V	1.000	77	0%	44	40.9%	2	0%	possibly_damaging(0.61)	deleterious(0.03)	deleterious(0.576)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FXR2	9513	genome.wustl.edu	37	17	7497267	7497267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004860.3	-1	reviewed	p.A359V	1.000	115	0%	106	47.2%	63	38%	benign(0.002)	tolerated(1)	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
WRAP53	55135	genome.wustl.edu	37	17	7606422	7606422	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018081.2	+1	validated	p.Q460	0.928	70	0%	51	62.7%	66	42.4%	-	-	-	superfamily_WD40_like
DNAH2	146754	genome.wustl.edu	37	17	7696521	7696521	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020877.2	+1	validated	p.R2523*	1.000	161	0%	62	53.2%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH2	146754	genome.wustl.edu	37	17	7720727	7720727	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020877.2	+1	validated	p.I3338	0.110	234	0%	43	41.9%	0	-	-	-	-	NULL
DNAH2	146754	genome.wustl.edu	37	17	7734074	7734074	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020877.2	+1	validated	p.H4048	0.937	64	0%	62	43.5%	0	-	-	-	-	HMMPfam_Dynein_heavy
CHD3	1107	genome.wustl.edu	37	17	7807783	7807783	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005271.2	+1	reviewed	p.I1365	1.000	202	0%	93	37.6%	293	49.4%	-	-	-	HMMPfam_DUF1087
CHD3	1107	genome.wustl.edu	37	17	7811008	7811008	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005271.2	+1	reviewed	p.L1731V	1.000	83	0%	65	43.1%	167	37.7%	benign(0)	-	-	NULL
CNTROB	116840	genome.wustl.edu	37	17	7840087	7840087	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380262	+1	known	p.L260	1.000	80	0%	50	42%	37	48.6%	-	-	-	NULL
ALOXE3	59344	genome.wustl.edu	37	17	8018935	8018935	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021628.2	-1	reviewed	p.E142*	1.000	191	0%	161	41%	0	-	-	-	-	superfamily_Lipoxygenase
AURKB	9212	genome.wustl.edu	37	17	8110894	8110894	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004217.2	-1	validated	p.I67	0.000	208	0%	97	37.1%	53	41.5%	-	-	-	superfamily_Protein kinase-like (PK-like)
CTC1	80169	genome.wustl.edu	37	17	8141554	8141554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025099.5	-1	validated	p.D148Y	1.000	93	0%	77	48.1%	4	100%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
PFAS	5198	genome.wustl.edu	37	17	8159678	8159678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012393.2	+1	reviewed	p.Q258H	1.000	28	0%	21	47.6%	15	46.6%	probably_damaging(0.994)	tolerated(0.57)	neutral(0.458)	superfamily_PurM N-terminal domain-like
MYH10	4628	genome.wustl.edu	37	17	8381707	8381707	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005964.1	-1	validated	p.I1854	1.000	175	0%	141	44%	185	54%	-	-	-	HMMPfam_Myosin_tail_1
MFSD6L	162387	genome.wustl.edu	37	17	8702265	8702265	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152599.3	-1	validated	p.I58	0.740	28	0%	29	51.7%	3	33.3%	-	-	-	superfamily_MFS_gen_substrate_transporter
WDR16	146845	genome.wustl.edu	37	17	9515765	9515765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145054.4	+1	validated	p.F332L	1.000	351	0%	102	48%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DHRS7C	201140	genome.wustl.edu	37	17	9674865	9674865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105571.1	-1	validated	p.F292L	1.000	72	0%	53	43.4%	0	-	benign(0)	tolerated(1)	-	NULL
DHRS7C	201140	genome.wustl.edu	37	17	9680562	9680562	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105571.1	-1	validated	p.I173	0.000	177	0%	173	44.5%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
GAS7	8522	genome.wustl.edu	37	17	9862555	9862555	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201433.1	-1	reviewed	p.S163	0.961	275	0%	124	37.1%	1	100%	-	-	-	NULL
MYH13	8735	genome.wustl.edu	37	17	10263503	10263503	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003802.2	-1	validated	p.R170*	1.000	485	0%	162	45.7%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH13	8735	genome.wustl.edu	37	17	10265586	10265586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003802.2	-1	validated	p.Y118*	1.000	648	0%	212	42%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH8	4626	genome.wustl.edu	37	17	10299772	10299772	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002472.2	-1	reviewed	e31-1	1.000	412	0%	332	42.8%	0	-	-	-	-	-
MYH8	4626	genome.wustl.edu	37	17	10312869	10312869	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002472.2	-1	reviewed	p.M542L	1.000	262	0%	112	42.9%	0	-	possibly_damaging(0.715)	deleterious(0.02)	deleterious(0.642)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH8	4626	genome.wustl.edu	37	17	10317719	10317719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002472.2	-1	reviewed	p.K296N	1.000	218	0%	143	30.1%	0	-	benign(0.01)	tolerated(0.46)	neutral(0.013)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH8	4626	genome.wustl.edu	37	17	10321972	10321972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002472.2	-1	reviewed	p.F167L	1.000	260	0%	101	47.5%	0	-	possibly_damaging(0.689)	tolerated(0.28)	neutral(0.278)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10366475	10366475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017533.2	-1	validated	p.Q279R	1.000	164	0%	178	52.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10366476	10366476	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017533.2	-1	validated	p.Q279*	1.000	163	0%	178	52.2%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH4	4622	genome.wustl.edu	37	17	10368790	10368790	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017533.2	-1	validated	p.I158	1.000	202	0%	91	36.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10400424	10400424	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005963.3	-1	reviewed	p.E1540*	1.000	640	0%	332	41.6%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10400701	10400701	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005963.3	-1	reviewed	p.S1478	0.991	312	0%	185	41.1%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10411894	10411894	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005963.3	-1	reviewed	p.G561	0.931	305	0%	185	47.6%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10415162	10415162	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005963.3	-1	reviewed	p.I470	1.000	306	0.3%	86	46.5%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10424623	10424623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100112.1	-1	reviewed	p.H1934N	1.000	314	0%	123	33.3%	0	-	benign(0.004)	tolerated(0.26)	neutral(0.034)	NULL
MYH2	4620	genome.wustl.edu	37	17	10428304	10428304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100112.1	-1	reviewed	p.K1581E	1.000	331	0%	223	42.6%	0	-	benign(0.334)	tolerated(0.1)	neutral(0.391)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10433230	10433230	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100112.1	-1	reviewed	p.C953	0.997	639	0%	509	38.9%	0	-	-	-	-	NULL
MYH2	4620	genome.wustl.edu	37	17	10433385	10433385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100112.1	-1	reviewed	p.E902K	1.000	344	0%	350	42.9%	0	-	benign(0.202)	deleterious(0.01)	neutral(0.425)	NULL
LOC100131621	100131621	genome.wustl.edu	37	17	10441027	10441027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001721685.1	+1	model	p.D58N	0.941	306	0%	145	53.1%	0	-	-	-	-	NULL
MYH2	4620	genome.wustl.edu	37	17	10446245	10446245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100112.1	-1	reviewed	p.R284I	1.000	35	0%	49	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10451105	10451105	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100112.1	-1	reviewed	p.E45*	1.000	319	0%	108	46.3%	0	-	-	-	-	HMMPfam_Myosin_N
MYH3	4621	genome.wustl.edu	37	17	10536042	10536042	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002470.2	-1	reviewed	p.V1569	1.000	354	0%	157	51%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10558223	10558223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002470.2	-1	reviewed	p.K53N	1.000	146	0%	186	45.7%	0	-	benign(0.148)	tolerated(0.06)	neutral(0.336)	HMMPfam_Myosin_N
C17orf48	56985	genome.wustl.edu	37	17	10614368	10614368	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020233.4	+1	validated	p.V312	0.923	295	0%	108	51.9%	21	33.3%	-	-	-	superfamily_Metallo-dependent phosphatases
DNAH9	1770	genome.wustl.edu	37	17	11520776	11520776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001372.3	+1	reviewed	p.R318H	0.536	42	0%	19	47.4%	0	-	benign(0.188)	tolerated(0.06)	neutral(0.340)	HMMPfam_DHC_N1
DNAH9	1770	genome.wustl.edu	37	17	11593689	11593689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001372.3	+1	reviewed	p.R1517Q	0.996	130	0%	38	31.6%	0	-	benign(0.073)	deleterious(0)	neutral(0.450)	HMMPfam_DHC_N2
DNAH9	1770	genome.wustl.edu	37	17	11772518	11772518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001372.3	+1	reviewed	p.C3334F	1.000	105	0%	46	39.1%	0	-	possibly_damaging(0.702)	deleterious(0)	deleterious(0.697)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11778359	11778359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001372.3	+1	reviewed	p.D3446N	1.000	166	0%	54	55.6%	0	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11806135	11806135	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001372.3	+1	reviewed	p.E3836*	1.000	104	0%	67	35.8%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH9	1770	genome.wustl.edu	37	17	11837305	11837305	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001372.3	+1	reviewed	p.R4136*	0.005	99	0%	101	48.5%	0	-	-	-	-	HMMPfam_Dynein_heavy
MYOCD	93649	genome.wustl.edu	37	17	12626284	12626284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153604.2	+1	reviewed	p.N125S	1.000	160	0%	53	58.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00707
MYOCD	93649	genome.wustl.edu	37	17	12647661	12647661	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153604.2	+1	reviewed	p.Q293	1.000	53	0%	43	46.5%	0	-	-	-	-	NULL
CDRT15	146822	genome.wustl.edu	37	17	14139314	14139314	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007530.1	-1	provisional	p.S142	0.034	275	0%	89	19.1%	0	-	-	-	-	NULL
TEKT3	64518	genome.wustl.edu	37	17	15207373	15207373	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031898.2	-1	reviewed	p.I451	1.000	274	0%	73	47.9%	0	-	-	-	-	HMMPfam_Tektin
CDRT1	374286	genome.wustl.edu	37	17	15499875	15499875	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006382.3	-1	provisional	p.R553*	1.000	265	0%	170	31.2%	1	100%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TRIM16	10626	genome.wustl.edu	37	17	15554676	15554676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006470.3	-1	reviewed	p.D83G	0.495	336	0%	100	37%	14	42.8%	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00336
NCOR1	9611	genome.wustl.edu	37	17	15938210	15938210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006311.2	-1	reviewed	p.S2335Y	1.000	209	0%	72	38.9%	72	43%	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	NULL
NCOR1	9611	genome.wustl.edu	37	17	16052787	16052787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006311.2	-1	reviewed	p.R296I	1.000	126	0%	161	46%	10	40%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ZNF287	57336	genome.wustl.edu	37	17	16471008	16471008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020653.2	-1	validated	p.R13H	0.041	85	0%	57	61.4%	5	20%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	NULL
ZNF624	57547	genome.wustl.edu	37	17	16526660	16526660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020787.2	-1	validated	p.N514H	0.854	78	0%	64	50%	3	33.3%	probably_damaging(1)	tolerated(0.69)	deleterious(0.502)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF624	57547	genome.wustl.edu	37	17	16527571	16527571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020787.2	-1	validated	p.I210S	0.004	169	0%	186	41.4%	1	0%	benign(0.006)	tolerated(0.84)	neutral(0.001)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16608692	16608692	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014695.1	+1	provisional	p.E215*	0.473	346	0%	234	24.4%	0	-	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16612773	16612773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014695.1	+1	provisional	p.S468R	0.292	372	0%	322	45.3%	0	-	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16630875	16630875	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000328495	+1	known	p.F126S	0.166	363	0%	401	22.7%	2	0%	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16630972	16630972	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014695.1	+1	provisional	p.N675H	0.638	429	0%	431	37.4%	1	0%	benign(0.394)	tolerated(0.09)	neutral(0.423)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16665751	16665751	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014695.1	+1	provisional	p.S1264*	0.096	54	0%	75	30.7%	0	-	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16667344	16667344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014695.1	+1	provisional	p.R1318I	0.006	299	0.3%	132	27.3%	0	-	unknown(0)	tolerated(0.06)	-	NULL
TNFRSF13B	23495	genome.wustl.edu	37	17	16855848	16855848	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012452.2	-1	reviewed	p.E37	0.994	79	0%	37	45.9%	0	-	-	-	-	PatternScan_TNFR_NGFR_1
MPRIP	23164	genome.wustl.edu	37	17	17064565	17064565	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000423885	+1	known	p.A173V	0.993	14	0%	29	37.9%	72	41.6%	-	-	-	NULL
COPS3	8533	genome.wustl.edu	37	17	17174227	17174227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003653.2	-1	reviewed	p.R94Q	1.000	136	0%	118	46.6%	73	39.7%	possibly_damaging(0.519)	tolerated(0.19)	neutral(0.224)	NULL
RASD1	51655	genome.wustl.edu	37	17	17399288	17399288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016084.3	-1	reviewed	p.E70K	1.000	59	0%	43	44.2%	11	9%	possibly_damaging(0.697)	tolerated(0.07)	deleterious(0.569)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TOM1L2	146691	genome.wustl.edu	37	17	17766093	17766093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001082968.1	-1	validated	p.D385A	1.000	132	0%	107	41.1%	7	42.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
C17orf39	79018	genome.wustl.edu	37	17	17957467	17957467	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024052.4	+1	validated	p.F175	1.000	118	0%	219	42.5%	12	25%	-	-	-	HMMPfam_Vac_ImportDeg
FLII	2314	genome.wustl.edu	37	17	18148549	18148549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002018.2	-1	reviewed	p.R1238Q	0.011	34	0%	12	66.7%	113	50.4%	benign(0.038)	deleterious(0.05)	neutral(0.347)	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753
TOP3A	7156	genome.wustl.edu	37	17	18194238	18194238	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004618.3	-1	reviewed	p.Q462P	0.882	73	0%	61	52.5%	28	60.7%	benign(0.218)	tolerated(0.16)	neutral(0.081)	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00437,HMMPfam_Topoisom_bac
LOC645139	645139	genome.wustl.edu	37	17	18553888	18553888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_928169.3	+1	model	p.P167Q	0.528	75	0%	197	30.5%	0	-	-	-	-	superfamily_ARM repeat
FBXW10	10517	genome.wustl.edu	37	17	18675864	18675864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031456.3	+1	validated	p.L716I	0.000	70	0%	109	46.8%	0	-	possibly_damaging(0.485)	tolerated(0.23)	neutral(0.203)	NULL
PRPSAP2	5636	genome.wustl.edu	37	17	18769254	18769254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002767.2	+1	reviewed	p.K36N	1.000	105	0%	129	48.8%	36	55.5%	benign(0.003)	tolerated(0.35)	neutral(0.021)	superfamily_SSF53271
ALDH3A2	224	genome.wustl.edu	37	17	19559862	19559862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031806.1	+1	reviewed	p.D219Y	1.000	167	0%	207	45.4%	87	52.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ALDH3A2	224	genome.wustl.edu	37	17	19575085	19575085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031806.1	+1	reviewed	p.S420Y	1.000	110	0%	155	40.6%	98	33.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Aldehyde_DH/Histidinol_DH
ULK2	9706	genome.wustl.edu	37	17	19769055	19769055	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142610.1	-1	reviewed	p.I59	1.000	39	0%	238	37.8%	4	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AKAP10	11216	genome.wustl.edu	37	17	19861351	19861351	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007202.2	-1	reviewed	p.E285*	0.998	222	0%	217	40.6%	6	0%	-	-	-	HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
SPECC1	92521	genome.wustl.edu	37	17	20109172	20109172	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033553.1	+1	validated	p.E604*	1.000	72	0%	32	43.8%	0	-	-	-	-	NULL
SPECC1	92521	genome.wustl.edu	37	17	20160786	20160786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033553.1	+1	validated	p.E901D	1.000	58	0%	40	37.5%	1	0%	benign(0.041)	tolerated(0.54)	neutral(0.010)	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20227502	20227502	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000425519	+1	known	p.Q117	0.000	104	0%	399	30.1%	0	-	-	-	-	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20268942	20268942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000425519	+1	known	p.N801H	0.502	124	0%	78	41%	0	-	benign(0.047)	tolerated(0.25)	neutral(0.040)	NULL
CCDC144NL	339184	genome.wustl.edu	37	17	20798990	20798990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004306.1	-1	provisional	p.S115I	0.150	68	0%	22	50%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
DHRS7B	25979	genome.wustl.edu	37	17	21081629	21081629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015510.3	+1	validated	p.E95*	0.999	97	0%	56	51.8%	27	0%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
KSR1	8844	genome.wustl.edu	37	17	25904559	25904559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014238.1	+1	validated	p.M1I	1.000	94	0.000	9	0.667	5	0%	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	NULL
POLDIP2	26073	genome.wustl.edu	37	17	26681593	26681593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015584.3	-1	reviewed	p.F87V	1.000	46	0%	46	47.8%	88	52.2%	-	-	-	NULL
SPAG5	10615	genome.wustl.edu	37	17	26919392	26919392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006461.3	-1	reviewed	p.E290D	0.002	77	0%	121	38.8%	38	55.2%	benign(0.235)	tolerated(0.39)	neutral(0.040)	NULL
SDF2	6388	genome.wustl.edu	37	17	26982351	26982351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006923.2	-1	reviewed	p.R101Q	1.000	231	0%	85	43.5%	85	40%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RAB34	83871	genome.wustl.edu	37	17	27041619	27041619	+	Silent	SNP	G	G	A	rs71669647		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142625.2	-1	validated	p.L260	0.000	28	0%	30	46.7%	492	43.6%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174
RPL23A	6147	genome.wustl.edu	37	17	27049755	27049755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000984.5	+1	reviewed	p.A75D	1.000	40	0%	57	43.9%	1333	49.3%	benign(0.224)	tolerated(0.29)	neutral(0.051)	superfamily_Ribosomal proteins L23 and L15e,HMMPfam_Ribosomal_L23
ERAL1	26284	genome.wustl.edu	37	17	27186290	27186290	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005702.2	+1	provisional	p.E394*	1.000	243	0%	149	38.9%	134	42.5%	-	-	-	superfamily_Prokaryotic type KH domain (KH-domain type II)
SEZ6	124925	genome.wustl.edu	37	17	27284518	27284518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178860.4	-1	validated	p.R781Q	1.000	93	0%	41	51.2%	0	-	probably_damaging(1)	tolerated(0.5)	deleterious(0.510)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TAOK1	57551	genome.wustl.edu	37	17	27778641	27778641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020791.1	+1	validated	p.E25D	1.000	220	0%	95	51.6%	5	80%	benign(0.033)	tolerated(0.11)	neutral(0.273)	superfamily_Protein kinase-like (PK-like)
TAOK1	57551	genome.wustl.edu	37	17	27857431	27857431	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020791.1	+1	validated	p.E719*	1.000	10	0%	45	40%	4	25%	-	-	-	superfamily_Protein kinase-like (PK-like)
ANKRD13B	124930	genome.wustl.edu	37	17	27935918	27935918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152345.4	+1	validated	p.K157N	1.000	15	0%	27	48.1%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CORO6	84940	genome.wustl.edu	37	17	27943753	27943753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032854.3	-1	validated	p.R324M	1.000	33	0%	52	36.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like,HMMPfam_DUF1900
EFCAB5	374786	genome.wustl.edu	37	17	28323348	28323348	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198529.3	+1	validated	p.E315*	1.000	147	0%	158	41.8%	0	-	-	-	-	superfamily_EF-hand
EFCAB5	374786	genome.wustl.edu	37	17	28417521	28417521	+	Missense_Mutation	SNP	C	C	T	rs190450097	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198529.3	+1	validated	p.R1256C	1.000	180	0%	95	45.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NSRP1	84081	genome.wustl.edu	37	17	28512392	28512392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032141.2	+1	validated	p.N459K	0.000	135	0%	137	46.7%	21	57.1%	benign(0.001)	tolerated(1)	-	NULL
CPD	1362	genome.wustl.edu	37	17	28770926	28770926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001304.3	+1	reviewed	p.K827T	0.966	171	0%	36	52.8%	25	52%	benign(0.002)	tolerated(0.49)	neutral(0.011)	HMMSmart_Zn_pept,superfamily_CarboxypepD_reg
ATAD5	79915	genome.wustl.edu	37	17	29220838	29220838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024857.3	+1	provisional	p.M1656R	1.000	140	0%	233	45.5%	8	62.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TEFM	79736	genome.wustl.edu	37	17	29226360	29226360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024683.3	-1	validated	p.L304I	1.000	108	0%	133	39.8%	19	36.8%	possibly_damaging(0.94)	tolerated(0.07)	deleterious(0.704)	superfamily_Ribonuclease H-like
TEFM	79736	genome.wustl.edu	37	17	29231099	29231099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024683.3	-1	validated	p.E160D	0.374	66	0%	177	38.4%	17	70.5%	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
ENSG00000250288	0	genome.wustl.edu	37	17	29351362	29351362	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000504550	+1	novel	NULL	0.864	20	0%	35	34.3%	2	0%	-	-	-	-
NF1	4763	genome.wustl.edu	37	17	29552127	29552127	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042492.2	+1	reviewed	p.S620R	1.000	214	0%	105	41.9%	7	57.1%	benign(0.008)	tolerated(0.07)	neutral(0.319)	NULL
NF1	4763	genome.wustl.edu	37	17	29559728	29559728	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042492.2	+1	reviewed	p.L1109	0.948	306	0%	64	32.8%	6	0%	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29560097	29560097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042492.2	+1	reviewed	p.E1192*	1.000	295	0%	65	36.9%	7	28.5%	-	-	-	HMMSmart_SM00323
NF1	4763	genome.wustl.edu	37	17	29580016	29580016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042492.2	+1	reviewed	p.S1391P	1.000	134	0%	52	48.1%	2	0%	benign(0.02)	tolerated(0.22)	neutral(0.043)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
OMG	4974	genome.wustl.edu	37	17	29622428	29622428	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002544.4	-1	validated	p.R308*	1.000	921	0.1%	188	44.7%	0	-	-	-	-	NULL
EVI2A	2123	genome.wustl.edu	37	17	29645939	29645939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003927.2	-1	validated	p.N54K	0.852	225	0%	123	49.6%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	HMMPfam_EVI2A
NF1	4763	genome.wustl.edu	37	17	29677267	29677267	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042492.2	+1	reviewed	p.L2463R	1.000	201	0%	215	41.4%	11	63.6%	possibly_damaging(0.444)	tolerated(0.06)	neutral(0.468)	NULL
MIR193A	406968	genome.wustl.edu	37	17	29887040	29887040	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384882	+1	known	NULL	1.000	17	0%	29	51.7%	0	-	-	-	-	-
RHOT1	55288	genome.wustl.edu	37	17	30520205	30520205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033568.1	+1	validated	p.K230N	1.000	132	0%	147	46.9%	32	34.3%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_EF_assoc_2,superfamily_SSF47473
RHOT1	55288	genome.wustl.edu	37	17	30551678	30551678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033568.1	+1	validated	p.R668*	1.000	306	0%	151	16.6%	41	17%	-	-	-	NULL
MYO1D	4642	genome.wustl.edu	37	17	31039083	31039083	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015194.1	-1	provisional	p.R682*	1.000	452	0%	215	49.3%	20	5%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1D	4642	genome.wustl.edu	37	17	31082563	31082563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015194.1	-1	provisional	p.L472I	1.000	337	0%	46	43.5%	8	12.5%	benign(0.368)	deleterious(0.01)	deleterious(0.523)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000226049	0	genome.wustl.edu	37	17	32365526	32365526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000430493	-1	known	p.K398T	1.000	237	0%	395	40.3%	13	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CCT6B	10693	genome.wustl.edu	37	17	33267637	33267637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006584.2	-1	reviewed	p.I297L	0.997	87	0%	57	43.9%	5	80%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
SLC35G3	146861	genome.wustl.edu	37	17	33520532	33520532	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152462.2	-1	validated	p.V265	1.000	201	0%	132	47%	0	-	-	-	-	superfamily_Multidrug resistance efflux transporter EmrE
SLFN12	55106	genome.wustl.edu	37	17	33738800	33738800	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018042.3	-1	validated	p.L432	0.051	173	0%	131	51.1%	16	31.2%	-	-	-	NULL
SLFN12	55106	genome.wustl.edu	37	17	33749205	33749205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018042.3	-1	validated	p.K281N	0.000	142	0%	100	54%	5	0%	benign(0.076)	tolerated(0.55)	neutral(0.013)	HMMPfam_AAA_4
SLFN12	55106	genome.wustl.edu	37	17	33749312	33749312	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018042.3	-1	validated	p.E246*	0.000	128	0%	110	44.5%	1	0%	-	-	-	HMMPfam_AAA_4
SLFN12	55106	genome.wustl.edu	37	17	33749731	33749731	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018042.3	-1	validated	p.F106C	0.898	142	0%	126	54.8%	5	40%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
SLFN13	146857	genome.wustl.edu	37	17	33768841	33768841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144682.5	-1	validated	p.V555M	1.000	189	0%	91	24.2%	19	47.3%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
SLFN12L	100506736	genome.wustl.edu	37	17	33802206	33802206	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145027.1	-1	validated	p.A530	0.000	313	0%	295	47.5%	3	0%	-	-	-	NULL
SLFN12L	100506736	genome.wustl.edu	37	17	33806627	33806627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145027.1	-1	validated	p.D230G	0.028	196	0%	169	44.4%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
PEX12	5193	genome.wustl.edu	37	17	33904940	33904940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000286.2	-1	reviewed	p.R34I	1.000	133	0%	67	19.4%	4	25%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Pex2_Pex12
MMP28	79148	genome.wustl.edu	37	17	34100198	34100198	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024302.3	-1	reviewed	p.P197H	1.000	93	0%	63	44.4%	0	-	-	-	-	NULL
TAF15	8148	genome.wustl.edu	37	17	34171729	34171730	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139215.1	+1	reviewed	p.G476fs	0.972:0.055	-	-	-	-	-	-	-	-	-	NULL
CCL23	6368	genome.wustl.edu	37	17	34340345	34340345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005064.3	-1	reviewed	p.F102L	0.598	117	0%	57	43.9%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
CCL18	6362	genome.wustl.edu	37	17	34398381	34398381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002988.2	+1	validated	p.D84N	0.015	131	0%	77	46.8%	14	0%	possibly_damaging(0.775)	tolerated(0.09)	deleterious(0.585)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
CCL4	6351	genome.wustl.edu	37	17	34431978	34431978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002984.2	+1	validated	p.R45H	0.000	254	0.4%	79	43%	2	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	PatternScan_SMALL_CYTOKINES_CC,HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
PIGW	284098	genome.wustl.edu	37	17	34893298	34893298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178517.3	+1	validated	p.F116L	1.000	129	0%	280	50.7%	9	66.6%	benign(0.157)	tolerated(0.66)	neutral(0.017)	NULL
PIGW	284098	genome.wustl.edu	37	17	34894262	34894262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178517.3	+1	validated	p.L438I	0.869	57	0%	178	38.2%	19	47.3%	benign(0.025)	tolerated(0.43)	neutral(0.014)	HMMPfam_GWT1
PIGW	284098	genome.wustl.edu	37	17	34894394	34894394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178517.3	+1	validated	p.L482I	0.151	26	0%	70	50%	22	50%	benign(0.002)	tolerated(0.49)	neutral(0.011)	NULL
AATF	26574	genome.wustl.edu	37	17	35348139	35348139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012138.3	+1	reviewed	p.D461Y	1.000	325	0%	238	42.9%	82	46.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ACACA	31	genome.wustl.edu	37	17	35518823	35518823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198834.1	-1	reviewed	p.E1741K	0.997	681	0%	96	45.8%	12	75%	benign(0.004)	tolerated(0.11)	neutral(0.272)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
ACACA	31	genome.wustl.edu	37	17	35564715	35564715	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198834.1	-1	reviewed	e31-1	1.000	202	0%	42	33.3%	0	-	-	-	-	-
ACACA	31	genome.wustl.edu	37	17	35591977	35591977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198834.1	-1	reviewed	p.E1053D	1.000	271	0%	120	42.5%	3	0%	benign(0.025)	tolerated(0.1)	neutral(0.287)	HMMPfam_ACC_central
ACACA	31	genome.wustl.edu	37	17	35614625	35614625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198834.1	-1	reviewed	p.S609L	1.000	221	0%	129	42.6%	0	-	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	HMMPfam_Biotin_carb_C,superfamily_Rudmnt_hyb_motif
ACACA	31	genome.wustl.edu	37	17	35687359	35687359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198834.1	-1	reviewed	p.R31I	1.000	196	0%	85	42.4%	1	100%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
SYNRG	11276	genome.wustl.edu	37	17	35937650	35937650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007247.4	-1	reviewed	p.Q217H	1.000	223	0%	157	54.8%	8	25%	benign(0.002)	tolerated(0.3)	neutral(0.029)	NULL
ENSG00000174093	0	genome.wustl.edu	37	17	36352477	36352477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000312412	-1	known	p.S437*	1.000	85	0%	116	19%	63	0%	-	-	-	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
GPR179	440435	genome.wustl.edu	37	17	36482576	36482576	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004334.2	-1	validated	p.I2292	0.457	190	0%	91	35.2%	0	-	-	-	-	NULL
SRCIN1	80725	genome.wustl.edu	37	17	36719126	36719126	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025248.2	-1	validated	p.I257	1.000	60	0%	44	47.7%	2	50%	-	-	-	NULL
FLJ43826	342666	genome.wustl.edu	37	17	37187848	37187848	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_040620.2	+1	model	NULL	0.000	39	0%	55	45.5%	0	-	-	-	-	-
STAC2	342667	genome.wustl.edu	37	17	37373405	37373405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198993.3	-1	validated	p.R140Q	1.000	29	0%	38	55.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
STAC2	342667	genome.wustl.edu	37	17	37374419	37374419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198993.3	-1	validated	p.R33Q	1.000	11	0%	13	76.9%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
STARD3	10948	genome.wustl.edu	37	17	37815800	37815800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006804.3	+1	reviewed	p.K263N	1.000	46	0%	54	35.2%	69	42%	benign(0.217)	deleterious(0)	neutral(0.466)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
IKZF3	22806	genome.wustl.edu	37	17	37922088	37922088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012481.3	-1	reviewed	p.F495L	1.000	79	0%	34	44.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SNORD124	100113390	genome.wustl.edu	37	17	38183825	38183825	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_003692.2	-1	provisional	NULL	0.555	31	0.000	9	0.556	2	50%	-	-	-	-
MED24	9862	genome.wustl.edu	37	17	38209762	38209762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014815.3	-1	reviewed	p.F30L	1.000	158	0%	178	39.3%	18	55.5%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
TOP2A	7153	genome.wustl.edu	37	17	38546357	38546357	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001067.2	-1	reviewed	p.R1443	0.019	125	0%	134	53%	279	46.9%	-	-	-	HMMPfam_DTHCT
SMARCE1	6605	genome.wustl.edu	37	17	38788515	38788515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003079.4	-1	reviewed	p.R216W	1.000	254	0%	60	41.7%	212	38.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRT24	192666	genome.wustl.edu	37	17	38859843	38859843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019016.2	-1	reviewed	p.L35M	0.014	49	0%	24	37.5%	0	-	unknown(0)	deleterious(0.04)	-	NULL
KRT26	353288	genome.wustl.edu	37	17	38925240	38925240	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181539.4	-1	reviewed	p.R360*	0.753	173	0%	78	44.9%	0	-	-	-	-	HMMPfam_Filament
KRT10	3858	genome.wustl.edu	37	17	38975878	38975878	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000421.3	-1	reviewed	p.R422*	0.001	305	0.3%	123	44.7%	0	-	-	-	-	HMMPfam_Filament
KRT23	25984	genome.wustl.edu	37	17	39092668	39092668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015515.3	-1	reviewed	p.R63I	0.000	61	0%	43	65.1%	16	62.5%	possibly_damaging(0.819)	tolerated(0.39)	neutral(0.326)	NULL
KRT39	390792	genome.wustl.edu	37	17	39115061	39115061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213656.3	-1	reviewed	p.S423Y	0.002	166	0%	52	42.3%	0	-	possibly_damaging(0.887)	deleterious(0.03)	deleterious(0.712)	NULL
KRT39	390792	genome.wustl.edu	37	17	39118725	39118725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213656.3	-1	reviewed	p.E267*	0.984	405	0%	146	21.9%	0	-	-	-	-	HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39122910	39122910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_213656.3	-1	reviewed	p.R67C	0.000	609	0%	164	47.6%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
KRTAP4-6	81871	genome.wustl.edu	37	17	39296498	39296498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000345847	-1	known	p.R81H	0.991	155	0%	26	65.4%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Keratin_B2
KRT33B	3884	genome.wustl.edu	37	17	39522822	39522822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002279.3	-1	reviewed	p.R163H	1.000	129	0%	52	38.5%	0	-	possibly_damaging(0.478)	tolerated(0.07)	deleterious(0.477)	HMMPfam_Filament
KRT36	8689	genome.wustl.edu	37	17	39643421	39643421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003771.4	-1	reviewed	p.R330Q	0.969	71	0%	20	55%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Filament
KRT36	8689	genome.wustl.edu	37	17	39644510	39644510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003771.4	-1	reviewed	p.K228N	1.000	125	0%	78	47.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Prefoldin,HMMPfam_Filament
KRT13	3860	genome.wustl.edu	37	17	39658687	39658687	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153490.2	-1	reviewed	p.K395Q	1.000	237	0%	78	35.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT14	3861	genome.wustl.edu	37	17	39740051	39740051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000526.4	-1	reviewed	p.E296D	1.000	127	0%	88	48.9%	0	-	possibly_damaging(0.833)	deleterious(0.02)	deleterious(0.701)	superfamily_Prefoldin,HMMPfam_Filament
NKIRAS2	28511	genome.wustl.edu	37	17	40174499	40174499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001349.2	+1	validated	p.F59L	1.000	69	0%	73	42.5%	68	35.2%	benign(0.002)	tolerated(0.7)	neutral(0.002)	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
STAT5B	6777	genome.wustl.edu	37	17	40359740	40359740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012448.3	-1	reviewed	p.R638I	1.000	79	0%	85	43.5%	12	0%	probably_damaging(0.956)	tolerated(0.15)	deleterious(0.641)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
STAT5A	6776	genome.wustl.edu	37	17	40452749	40452749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003152.3	+1	reviewed	p.E284K	1.000	76	0%	32	43.8%	10	10%	possibly_damaging(0.642)	deleterious(0.02)	deleterious(0.608)	HMMPfam_STAT_alpha,superfamily_STAT
STAT3	6774	genome.wustl.edu	37	17	40474477	40474477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139276.2	-1	reviewed	p.K642E	1.000	129	0%	94	44.7%	52	42.3%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_SH2,superfamily_SH2 domain
ATP6V0A1	535	genome.wustl.edu	37	17	40618522	40618522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130020.1	+1	reviewed	p.L65F	1.000	470	0%	505	45.9%	20	55%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	HMMPfam_V_ATPase_I
ATP6V0A1	535	genome.wustl.edu	37	17	40622223	40622223	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130020.1	+1	reviewed	p.Q137P	1.000	35	0%	70	45.7%	10	20%	possibly_damaging(0.947)	tolerated(0.27)	neutral(0.424)	HMMPfam_V_ATPase_I
COASY	80347	genome.wustl.edu	37	17	40716755	40716755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042532.2	+1	validated	p.Y388S	0.998	31	0%	62	41.9%	56	58.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CoaE,superfamily_SSF52540
PSMC3IP	29893	genome.wustl.edu	37	17	40729246	40729246	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016556.2	-1	validated	p.I70	0.998	182	0%	107	36.4%	30	43.3%	-	-	-	HMMPfam_TBPIP
PLEKHH3	79990	genome.wustl.edu	37	17	40821751	40821751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000445882	-1	known	p.C730Y	0.002	4	0.000	23	0.391	3	33.3%	-	-	-	NULL
EZH1	2145	genome.wustl.edu	37	17	40870044	40870044	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001991.3	-1	validated	p.E325*	1.000	173	0%	143	44.1%	1	0%	-	-	-	NULL
EZH1	2145	genome.wustl.edu	37	17	40880886	40880886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001991.3	-1	validated	p.R25Q	1.000	128	0%	317	46.1%	2	50%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
AOC2	314	genome.wustl.edu	37	17	40997280	40997280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_009590.2	+1	reviewed	p.R213C	0.000	32	0%	20	45%	1	100%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase N-terminal region
AOC2	314	genome.wustl.edu	37	17	41002254	41002254	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_009590.2	+1	reviewed	p.Y720*	0.810	355	0.3%	114	48.2%	4	25%	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
BRCA1	672	genome.wustl.edu	37	17	41245531	41245531	+	Nonsense_Mutation	SNP	C	C	A	rs80357638		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007294.3	-1	reviewed	p.E673*	0.994	193	0%	128	41.4%	3	33.3%	-	-	-	NULL
TMEM106A	113277	genome.wustl.edu	37	17	41369761	41369761	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145041.1	+1	provisional	p.Y244D	0.219	177	0%	68	48.5%	2	100%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_DUF1356
TMEM106A	113277	genome.wustl.edu	37	17	41369772	41369772	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145041.1	+1	provisional	p.C247	0.974	167	0%	63	38.1%	2	0%	-	-	-	HMMPfam_DUF1356
DHX8	1659	genome.wustl.edu	37	17	41576242	41576242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004941.1	+1	reviewed	p.E438A	1.000	146	0%	133	39.1%	28	60.7%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
DUSP3	1845	genome.wustl.edu	37	17	41852201	41852201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004090.3	-1	reviewed	p.F77L	1.000	182	0%	136	50%	30	23.3%	possibly_damaging(0.559)	deleterious(0.01)	deleterious(0.596)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
MPP2	4355	genome.wustl.edu	37	17	41958492	41958492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005374.3	-1	reviewed	p.K318N	1.000	223	0%	119	46.2%	8	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SH3-domain
ATXN7L3	56970	genome.wustl.edu	37	17	42273175	42273175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020218.1	-1	validated	p.P189H	1.000	65	0%	151	35.8%	41	48.7%	possibly_damaging(0.473)	deleterious(0.03)	deleterious(0.520)	NULL
GPATCH8	23131	genome.wustl.edu	37	17	42477585	42477585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001002909.1	-1	validated	p.E620D	0.405	80	0%	97	54.6%	20	30%	unknown(0)	tolerated(0.45)	-	NULL
C17orf104	284071	genome.wustl.edu	37	17	42744996	42744996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145080.2	+1	validated	p.L573I	1.000	32	0%	88	45.5%	1	100%	possibly_damaging(0.882)	tolerated(0.29)	neutral(0.373)	NULL
C17orf104	284071	genome.wustl.edu	37	17	42745149	42745149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145080.2	+1	validated	p.K624E	1.000	65	0%	73	46.6%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
DBF4B	80174	genome.wustl.edu	37	17	42818751	42818751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145663.1	+1	validated	p.S254Y	1.000	148	0%	243	46.1%	8	37.5%	probably_damaging(0.982)	tolerated(0.1)	deleterious(0.713)	NULL
ADAM11	4185	genome.wustl.edu	37	17	42850653	42850653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002390.4	+1	reviewed	p.R284C	0.159	40	0%	54	48.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
EFTUD2	9343	genome.wustl.edu	37	17	42957995	42957995	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004247.3	-1	validated	p.K182N	1.000	164	0%	99	43.4%	71	52.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU,superfamily_SSF52540
EFTUD2	9343	genome.wustl.edu	37	17	42971804	42971804	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004247.3	-1	validated	p.E29A	1.000	351	0%	206	44.2%	52	42.3%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
NMT1	4836	genome.wustl.edu	37	17	43180480	43180480	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021079.3	+1	provisional	p.F385	0.898	118	0%	61	47.5%	41	56%	-	-	-	HMMPfam_NMT_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
FMNL1	752	genome.wustl.edu	37	17	43322467	43322467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005892.3	+1	reviewed	p.A907V	1.000	59	0%	34	52.9%	14	14.2%	possibly_damaging(0.93)	tolerated(0.07)	deleterious(0.696)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PLEKHM1	9842	genome.wustl.edu	37	17	43535656	43535656	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014798.2	-1	reviewed	p.R486	0.995	39	0%	69	49.3%	13	38.4%	-	-	-	NULL
LOC100288229	100288229	genome.wustl.edu	37	17	43625955	43625955	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343565.1	-1	model	p.R583*	0.001	67	0%	104	18.3%	0	-	-	-	-	NULL
MAPT	4137	genome.wustl.edu	37	17	44060700	44060700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001123066.3	+1	validated	p.D177G	0.014	14	0.000	5	1.000	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
MAPT	4137	genome.wustl.edu	37	17	44087685	44087685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001123066.3	+1	validated	p.I613L	0.998	128	0%	64	40.6%	0	-	benign(0.007)	tolerated(0.48)	neutral(0.011)	HMMPfam_Tubulin-binding
LRRC37A2	474170	genome.wustl.edu	37	17	44592234	44592234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006607.2	+1	validated	p.Q719R	0.000	107	0%	124	21.8%	0	-	probably_damaging(0.993)	tolerated(0.15)	deleterious(0.691)	NULL
LRRC37A2	474170	genome.wustl.edu	37	17	44626686	44626686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006607.2	+1	validated	p.R1394I	0.000	31	0%	104	31.7%	7	28.5%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
LRRC37A2	474170	genome.wustl.edu	37	17	44626874	44626874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006607.2	+1	validated	p.E1457K	0.000	187	0.5%	137	19.7%	7	0%	benign(0.018)	deleterious(0.02)	neutral(0.384)	NULL
LRRC37A2	474170	genome.wustl.edu	37	17	44632749	44632749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006607.2	+1	validated	p.K1671N	0.000	223	0%	272	33.5%	7	28.5%	possibly_damaging(0.84)	deleterious(0)	deleterious(0.766)	NULL
GOSR2	9570	genome.wustl.edu	37	17	45012643	45012643	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012511.1	+1	reviewed	p.F195	0.000	108	0%	78	42.3%	8	37.5%	-	-	-	NULL
CBX1	10951	genome.wustl.edu	37	17	46154288	46154288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127228.1	-1	reviewed	p.L27I	1.000	790	0%	695	45.9%	175	38.8%	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
HOXB1	3211	genome.wustl.edu	37	17	46607208	46607208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002144.3	-1	reviewed	p.P203S	0.066	120	0%	70	51.4%	0	-	possibly_damaging(0.784)	deleterious(0.03)	deleterious(0.658)	HMMSmart_HOX,superfamily_Homeodomain_like
HOXB13	10481	genome.wustl.edu	37	17	46804367	46804367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006361.5	-1	reviewed	p.R214C	1.000	176	0.6%	54	44.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Homeodomain-like
TTLL6	284076	genome.wustl.edu	37	17	46865335	46865335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130918.1	-1	validated	p.A476V	1.000	231	0%	241	43.2%	0	-	benign(0.43)	tolerated(0.09)	neutral(0.436)	NULL
UBE2Z	65264	genome.wustl.edu	37	17	47004419	47004419	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023079.3	+1	validated	p.N330H	0.997	115	0%	58	55.2%	85	38.8%	possibly_damaging(0.787)	tolerated(0.13)	deleterious(0.547)	NULL
SNF8	11267	genome.wustl.edu	37	17	47009068	47009068	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007241.2	-1	provisional	p.Y192	0.876	191	0%	68	45.6%	149	10%	-	-	-	"HMMPfam_EAP30,superfamily_""Winged helix"" DNA-binding domain"
IGF2BP1	10642	genome.wustl.edu	37	17	47117401	47117401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006546.3	+1	reviewed	p.A256T	1.000	117	0%	39	41%	0	-	benign(0.31)	deleterious(0)	deleterious(0.541)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ZNF652	22834	genome.wustl.edu	37	17	47394699	47394699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145365.1	-1	validated	p.V130A	0.998	140	0%	125	44.8%	5	60%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
KAT7	11143	genome.wustl.edu	37	17	47875744	47875744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007067.3	+1	provisional	p.S135Y	1.000	79	0%	33	51.5%	14	7.1%	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	NULL
KAT7	11143	genome.wustl.edu	37	17	47888927	47888927	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000509124	+1	known	NULL	1.000	209	0%	128	35.2%	12	33.3%	-	-	-	-
KAT7	11143	genome.wustl.edu	37	17	47898699	47898699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007067.3	+1	provisional	p.A386T	1.000	284	0%	79	54.4%	5	80%	benign(0.096)	tolerated(0.35)	neutral(0.028)	superfamily_Acyl-CoA N-acyltransferases (Nat)
KAT7	11143	genome.wustl.edu	37	17	47899067	47899067	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007067.3	+1	provisional	p.L434*	0.934	293	0.3%	101	46.5%	6	16.6%	-	-	-	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
DLX4	1748	genome.wustl.edu	37	17	48051260	48051260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138281.2	+1	reviewed	p.Y226H	1.000	38	0%	52	46.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SAMD14	201191	genome.wustl.edu	37	17	48192943	48192943	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000504418	-1	known	p.E64*	1.000	49	0%	58	51.7%	1	0%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
COL1A1	1277	genome.wustl.edu	37	17	48275866	48275866	+	Splice_Site	SNP	C	C	A	rs72667020		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000088.3	-1	reviewed	e6-1	1.000	100	0%	64	42.2%	1	100%	-	-	-	-
EME1	146956	genome.wustl.edu	37	17	48452847	48452847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152463.2	+1	reviewed	p.F93C	0.000	81	0%	114	46.5%	3	0%	possibly_damaging(0.795)	deleterious(0.03)	deleterious(0.663)	NULL
EME1	146956	genome.wustl.edu	37	17	48458169	48458169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152463.2	+1	reviewed	p.A528T	0.739	142	0%	72	44.4%	5	40%	probably_damaging(0.969)	tolerated(0.24)	neutral(0.449)	NULL
CHAD	1101	genome.wustl.edu	37	17	48545888	48545888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001267.2	-1	reviewed	p.R96H	0.995	91	0%	30	43.3%	0	-	probably_damaging(0.986)	tolerated(0.13)	deleterious(0.687)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
EPN3	55040	genome.wustl.edu	37	17	48618255	48618255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017957.2	+1	validated	p.W361R	0.998	41	0%	38	50%	24	62.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SPATA20	64847	genome.wustl.edu	37	17	48629351	48629351	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022827.2	+1	provisional	p.F589	1.000	8	0.000	21	0.333	48	43.7%	-	-	-	superfamily_Six-hairpin glycosidases
CACNA1G	8913	genome.wustl.edu	37	17	48673958	48673958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018896.3	+1	validated	p.F1005L	1.000	129	0%	67	46.3%	0	-	benign(0.001)	tolerated(0.81)	neutral(0.001)	NULL
SPAG9	9043	genome.wustl.edu	37	17	49062336	49062336	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130528.2	-1	reviewed	p.I1012	0.949	143	0%	60	31.7%	25	40%	-	-	-	superfamily_WD40 repeat-like
SPAG9	9043	genome.wustl.edu	37	17	49063074	49063074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130528.2	-1	reviewed	p.S1002L	1.000	127	0%	108	41.7%	24	41.6%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	superfamily_WD40 repeat-like
MBTD1	54799	genome.wustl.edu	37	17	49278985	49278985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017643.2	-1	validated	p.L398I	1.000	130	0%	240	44.2%	10	40%	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
UTP18	51096	genome.wustl.edu	37	17	49357376	49357376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016001.2	+1	validated	p.E341D	1.000	115	0%	125	42.4%	26	34.6%	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMSmart_WD40,superfamily_WD40_like
UTP18	51096	genome.wustl.edu	37	17	49357756	49357756	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016001.2	+1	validated	p.E374*	1.000	75	0%	84	15.5%	39	0%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
KIF2B	84643	genome.wustl.edu	37	17	51900616	51900616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032559.4	+1	validated	p.E74D	0.998	125	0%	50	40%	0	-	benign(0.19)	tolerated(0.34)	neutral(0.041)	NULL
KIF2B	84643	genome.wustl.edu	37	17	51901906	51901906	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032559.4	+1	validated	p.R504	0.981	126	0%	55	41.8%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
MMD	23531	genome.wustl.edu	37	17	53478898	53478898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012329.2	-1	reviewed	p.Y150H	1.000	95	0%	122	18%	5	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_HlyIII
TRIM25	7706	genome.wustl.edu	37	17	54981702	54981702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005082.4	-1	reviewed	p.L281I	0.872	413	0%	238	25.6%	18	33.3%	benign(0.006)	tolerated(0.11)	neutral(0.272)	NULL
AKAP1	8165	genome.wustl.edu	37	17	55163801	55163801	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000427138	+1	known	p.G2	0.000	5	0.000	29	0.414	0	-	-	-	-	NULL
OR4D1	26689	genome.wustl.edu	37	17	56232526	56232526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012374.1	+1	provisional	p.Q4H	0.012	131	0%	64	46.9%	0	-	benign(0.116)	tolerated(0.12)	neutral(0.270)	superfamily_SSF81321
LPO	4025	genome.wustl.edu	37	17	56321361	56321361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006151.2	+1	reviewed	p.T28I	0.001	203	0%	61	49.2%	0	-	unknown(0)	tolerated(0.18)	-	NULL
LPO	4025	genome.wustl.edu	37	17	56332252	56332252	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006151.2	+1	reviewed	p.E396*	0.993	72	0%	43	41.9%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
MTMR4	9110	genome.wustl.edu	37	17	56581125	56581125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004687.4	-1	validated	p.F597L	1.000	33	0%	30	16.7%	16	25%	benign(0.004)	tolerated(0.68)	neutral(0.002)	NULL
SEPT4	5414	genome.wustl.edu	37	17	56603071	56603071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004574.2	-1	reviewed	p.L175I	0.999	95	0%	166	44.6%	0	-	benign(0.039)	tolerated(0.66)	neutral(0.005)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
C17orf47	284083	genome.wustl.edu	37	17	56619324	56619324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001038704.1	-1	predicted	p.V522A	1.000	75	0%	112	35.7%	0	-	possibly_damaging(0.86)	-	-	NULL
C17orf47	284083	genome.wustl.edu	37	17	56620405	56620405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001038704.1	-1	predicted	p.E381D	0.012	244	0%	362	47.8%	0	-	possibly_damaging(0.93)	-	-	NULL
SKA2	348235	genome.wustl.edu	37	17	57189660	57189660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182620.3	-1	validated	p.K115R	0.760	136	0%	247	30.8%	104	21.1%	benign(0.001)	tolerated(0.66)	neutral(0.003)	NULL
SMG8	55181	genome.wustl.edu	37	17	57290351	57290351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018149.6	+1	validated	p.H723N	1.000	116	0%	106	45.3%	22	54.5%	benign(0.002)	tolerated(0.5)	neutral(0.010)	HMMPfam_DUF2146
VMP1	81671	genome.wustl.edu	37	17	57816225	57816225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030938.3	+1	validated	p.L111I	1.000	191	0%	236	39.8%	23	30.4%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
TUBD1	51174	genome.wustl.edu	37	17	57944106	57944106	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016261.2	-1	validated	p.I313	0.967	61	0%	146	40.4%	5	60%	-	-	-	superfamily_Tubulin C-terminal domain-like
HEATR6	63897	genome.wustl.edu	37	17	58145059	58145059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022070.4	-1	validated	p.K325T	0.997	163	0%	147	38.1%	4	100%	unknown(0)	deleterious(0.02)	-	NULL
HEATR6	63897	genome.wustl.edu	37	17	58151198	58151198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022070.4	-1	validated	p.S126L	0.998	62	0%	67	58.2%	3	33.3%	probably_damaging(0.959)	tolerated(0.15)	deleterious(0.643)	superfamily_ARM-type_fold
USP32	84669	genome.wustl.edu	37	17	58259106	58259106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032582.3	-1	validated	p.S1376Y	1.000	63	0%	57	47.4%	27	55.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_UCH,superfamily_SSF54001
USP32	84669	genome.wustl.edu	37	17	58260600	58260600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032582.3	-1	validated	p.S1350L	0.293	67	0%	107	62.6%	22	63.6%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_UCH,superfamily_SSF54001
INTS2	57508	genome.wustl.edu	37	17	59944758	59944758	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026641.1	-1	validated	NULL	1.000	7	0.000	25	0.520	7	71.4%	-	-	-	-
INTS2	57508	genome.wustl.edu	37	17	59958518	59958518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020748.2	-1	validated	p.L710V	1.000	179	0%	93	49.5%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
INTS2	57508	genome.wustl.edu	37	17	59967158	59967158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020748.2	-1	validated	p.T666M	0.999	174	0%	145	39.3%	0	-	benign(0.033)	tolerated(0.32)	neutral(0.026)	NULL
MED13	9969	genome.wustl.edu	37	17	60050218	60050218	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005121.2	-1	reviewed	p.L1279	1.000	156	0%	122	36.1%	11	45.4%	-	-	-	HMMPfam_TRAP_240kDa
MED13	9969	genome.wustl.edu	37	17	60060308	60060308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005121.2	-1	reviewed	p.R1019Q	0.998	123	0%	81	43.2%	7	42.8%	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	NULL
MED13	9969	genome.wustl.edu	37	17	60062427	60062427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005121.2	-1	reviewed	p.G804R	1.000	210	0%	179	48.6%	1	100%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
TLK2	11011	genome.wustl.edu	37	17	60689916	60689916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006852.3	+1	validated	p.S748Y	1.000	73	0%	50	38%	29	37.9%	unknown(0)	-	-	superfamily_Kinase_like
MARCH10	162333	genome.wustl.edu	37	17	60782906	60782906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100875.1	-1	validated	p.N789H	1.000	110	0%	242	43%	0	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
MARCH10	162333	genome.wustl.edu	37	17	60813420	60813420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100875.1	-1	validated	p.F603L	1.000	155	0%	99	36.4%	0	-	possibly_damaging(0.631)	deleterious(0)	deleterious(0.665)	NULL
TANC2	26115	genome.wustl.edu	37	17	61428704	61428704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025185.3	+1	validated	p.S560L	1.000	131	0%	95	46.3%	4	25%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ACE	1636	genome.wustl.edu	37	17	61568597	61568597	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000789.2	+1	reviewed	p.E923*	1.000	59	0%	46	50%	8	0%	-	-	-	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ICAM2	3384	genome.wustl.edu	37	17	62082729	62082729	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000873.3	-1	reviewed	p.S22	0.050	28	0%	35	54.3%	8	75%	-	-	-	HMMPfam_ICAM_N
ENSG00000232457	0	genome.wustl.edu	37	17	62950458	62950458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000413214	+1	known	p.V73I	0.016	68	0%	101	42.6%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RGS9	8787	genome.wustl.edu	37	17	63156987	63156987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003835.3	+1	reviewed	p.R128Q	1.000	608	0%	284	41.9%	0	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	NULL
CEP112	201134	genome.wustl.edu	37	17	64025310	64025310	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145036.3	-1	validated	p.K478N	0.382	482	0%	233	49.4%	3	33.3%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
CEP112	201134	genome.wustl.edu	37	17	64026032	64026032	+	Missense_Mutation	SNP	C	C	A	rs34347913		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145036.3	-1	validated	p.R443I	1.000	309	0%	157	43.9%	3	66.6%	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	NULL
CEP112	201134	genome.wustl.edu	37	17	64179372	64179372	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145036.3	-1	validated	p.E16*	1.000	356	0%	226	40.7%	5	40%	-	-	-	NULL
APOH	350	genome.wustl.edu	37	17	64212957	64212957	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000042.2	-1	reviewed	p.E245*	0.992	297	0%	153	48.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
APOH	350	genome.wustl.edu	37	17	64224246	64224246	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000042.2	-1	reviewed	p.E45*	0.998	570	0%	185	40%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
BPTF	2186	genome.wustl.edu	37	17	65889532	65889532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182641.3	+1	reviewed	p.K701T	1.000	68	0%	63	44.4%	4	25%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
BPTF	2186	genome.wustl.edu	37	17	65905780	65905780	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182641.3	+1	reviewed	p.P965	0.990	65	0%	80	32.5%	9	66.6%	-	-	-	NULL
BPTF	2186	genome.wustl.edu	37	17	65942246	65942246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182641.3	+1	reviewed	p.Q2474H	0.989	175	0%	57	38.6%	5	60%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
BPTF	2186	genome.wustl.edu	37	17	65955882	65955882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182641.3	+1	reviewed	p.D2718Y	0.843	59	0%	68	45.6%	31	48.3%	possibly_damaging(0.924)	deleterious(0.04)	deleterious(0.722)	NULL
SLC16A6	9120	genome.wustl.edu	37	17	66265260	66265260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004694.4	-1	validated	p.H517N	0.003	233	0%	147	29.3%	0	-	benign(0.012)	deleterious(0.03)	neutral(0.365)	NULL
SLC16A6	9120	genome.wustl.edu	37	17	66267469	66267469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004694.4	-1	validated	p.E278K	0.000	93	0%	160	41.2%	1	0%	benign(0.017)	tolerated(0.46)	neutral(0.013)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ARSG	22901	genome.wustl.edu	37	17	66303840	66303840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014960.3	+1	validated	p.S69L	0.454	45	0%	119	45.4%	2	0%	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSG	22901	genome.wustl.edu	37	17	66381269	66381269	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014960.3	+1	validated	p.W349*	1.000	105	0%	43	51.2%	1	100%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
FAM20A	54757	genome.wustl.edu	37	17	66538872	66538872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017565.3	-1	validated	p.K297N	1.000	346	0%	202	46%	4	0%	benign(0.261)	tolerated(0.34)	neutral(0.050)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66890330	66890330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007168.2	-1	reviewed	p.R967K	0.509	62	0%	44	45.5%	1	0%	possibly_damaging(0.796)	tolerated(0.21)	neutral(0.343)	NULL
ABCA9	10350	genome.wustl.edu	37	17	66985205	66985205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080283.3	-1	reviewed	p.K1337T	0.996	1013	0%	193	43%	0	-	benign(0.366)	tolerated(0.11)	neutral(0.388)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA9	10350	genome.wustl.edu	37	17	67004239	67004239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080283.3	-1	reviewed	p.E1095D	0.000	71	0%	74	47.3%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67014665	67014665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080283.3	-1	reviewed	p.E886K	0.000	182	0%	52	42.3%	0	-	benign(0)	tolerated(1)	-	NULL
ABCA9	10350	genome.wustl.edu	37	17	67028402	67028402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080283.3	-1	reviewed	p.R431Q	0.000	142	0%	37	48.6%	1	0%	benign(0.009)	tolerated(0.34)	neutral(0.024)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67031864	67031864	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080283.3	-1	reviewed	p.Q293H	0.000	108	0%	26	38.5%	0	-	benign(0.02)	tolerated(0.14)	neutral(0.251)	NULL
ABCA6	23460	genome.wustl.edu	37	17	67101694	67101694	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080284.2	-1	reviewed	p.I883	0.000	193	0%	66	40.9%	0	-	-	-	-	NULL
ABCA6	23460	genome.wustl.edu	37	17	67132143	67132143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000420289	-1	known	p.D184Y	0.000	33	0%	23	52.2%	0	-	-	-	-	NULL
ABCA10	10349	genome.wustl.edu	37	17	67212046	67212046	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080282.3	-1	reviewed	p.G256	0.978	35	0%	36	55.6%	0	-	-	-	-	NULL
ABCA10	10349	genome.wustl.edu	37	17	67217935	67217935	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080282.3	-1	reviewed	p.E101*	1.000	134	0.7%	35	34.3%	0	-	-	-	-	NULL
ABCA5	23461	genome.wustl.edu	37	17	67251940	67251940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018672.3	-1	reviewed	p.D1304Y	1.000	39	0%	51	37.3%	2	50%	benign(0.234)	deleterious(0.01)	neutral(0.429)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA5	23461	genome.wustl.edu	37	17	67257811	67257811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018672.3	-1	reviewed	p.N1132H	0.999	24	0%	17	41.2%	2	0%	possibly_damaging(0.886)	tolerated(0.08)	deleterious(0.646)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67267407	67267407	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018672.3	-1	reviewed	p.S930R	1.000	251	0%	103	35.9%	3	33.3%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67293434	67293434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018672.3	-1	reviewed	p.R445I	1.000	101	0%	84	34.5%	0	-	benign(0.253)	tolerated(0.05)	neutral(0.371)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67298916	67298916	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018672.3	-1	reviewed	p.S354	0.038	97	0%	46	37%	5	40%	-	-	-	NULL
ABCA5	23461	genome.wustl.edu	37	17	67300938	67300938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018672.3	-1	reviewed	p.L268I	1.000	80	0%	41	26.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67305500	67305500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018672.3	-1	reviewed	p.S124R	0.132	165	0%	62	53.2%	2	50%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
MAP2K6	5608	genome.wustl.edu	37	17	67532264	67532264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002758.3	+1	reviewed	p.K297T	1.000	106	0%	52	55.8%	151	47%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SSTR2	6752	genome.wustl.edu	37	17	71166476	71166476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001050.2	+1	reviewed	p.R340W	0.959	70	0%	73	47.9%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_Family A G protein-coupled receptor-like
FAM104A	84923	genome.wustl.edu	37	17	71205896	71205896	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098832.1	-1	validated	p.S132	0.998	35	0%	24	41.7%	35	45.7%	-	-	-	NULL
SDK2	54549	genome.wustl.edu	37	17	71335062	71335062	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144952.1	-1	provisional	p.Y2061	0.996	588	0%	185	40.5%	1	0%	-	-	-	NULL
SDK2	54549	genome.wustl.edu	37	17	71346397	71346397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144952.1	-1	provisional	p.R2006Q	0.997	95	0%	36	41.7%	0	-	possibly_damaging(0.853)	deleterious(0.05)	deleterious(0.674)	NULL
SDK2	54549	genome.wustl.edu	37	17	71357901	71357901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144952.1	-1	provisional	p.Y1797H	1.000	114	0%	30	40%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DNAI2	64446	genome.wustl.edu	37	17	72283118	72283118	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023036.4	+1	reviewed	p.I116	1.000	117	0%	67	50.7%	0	-	-	-	-	NULL
GPR142	350383	genome.wustl.edu	37	17	72368462	72368462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181790.1	+1	provisional	p.A371V	1.000	87	0%	48	91.7%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_7tm_1,superfamily_SSF81321
LOC100289576	100289576	genome.wustl.edu	37	17	72440122	72440122	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343581.1	-1	model	p.F32C	0.003	59	0%	67	44.8%	0	-	-	-	-	NULL
CD300C	10871	genome.wustl.edu	37	17	72540854	72540854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006678.3	-1	provisional	p.E98D	0.125	380	0%	124	48.4%	4	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
GRIN2C	2905	genome.wustl.edu	37	17	72846416	72846416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000835.3	-1	reviewed	p.D474N	1.000	14	0%	20	50%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like II
OTOP2	92736	genome.wustl.edu	37	17	72927220	72927220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178160.2	+1	validated	p.S497Y	1.000	41	0%	63	41.3%	0	-	benign(0.013)	deleterious(0.01)	neutral(0.406)	NULL
OTOP3	347741	genome.wustl.edu	37	17	72939738	72939738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178233.1	+1	provisional	p.L242M	1.000	102	0%	58	50%	0	-	benign(0.091)	tolerated(0.19)	neutral(0.056)	NULL
CDR2L	30850	genome.wustl.edu	37	17	72998268	72998268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014603.2	+1	validated	p.R151C	0.998	24	0%	19	47.4%	48	56.2%	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	NULL
NT5C	30833	genome.wustl.edu	37	17	73127325	73127325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014595.1	-1	provisional	p.P76S	1.000	27	0%	34	35.3%	32	37.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_NT5C,superfamily_HAD-like
SLC25A19	60386	genome.wustl.edu	37	17	73279609	73279609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001126121.1	-1	reviewed	p.F118L	0.956	26	0%	26	46.2%	15	46.6%	benign(0.008)	tolerated(0.66)	neutral(0.003)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
MRPL38	64978	genome.wustl.edu	37	17	73895623	73895623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032478.3	-1	reviewed	p.F281L	0.900	12	0%	45	48.9%	76	27.6%	benign(0.13)	tolerated(0.45)	neutral(0.023)	HMMPfam_PBP,superfamily_PEBP
QRICH2	84074	genome.wustl.edu	37	17	74289248	74289248	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032134.1	-1	provisional	p.V354	0.000	74	0%	63	46%	3	66.6%	-	-	-	NULL
PRPSAP1	5635	genome.wustl.edu	37	17	74309931	74309931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002766.2	-1	validated	p.D275Y	1.000	105	0%	78	39.7%	41	31.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pribosyltran,superfamily_PRTase-like
ST6GALNAC2	10610	genome.wustl.edu	37	17	74562296	74562296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006456.2	-1	validated	p.E339K	0.997	50	0%	189	48.1%	1	100%	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	HMMPfam_Glyco_transf_29
MFSD11	79157	genome.wustl.edu	37	17	74774312	74774312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024311.2	+1	provisional	p.L410F	1.000	437	0%	355	47%	14	35.7%	benign(0.033)	tolerated(0.18)	neutral(0.058)	superfamily_MFS general substrate transporter
SEC14L1	6397	genome.wustl.edu	37	17	75190773	75190773	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039573.2	+1	reviewed	p.I163	0.067	134	0%	82	40.2%	32	34.3%	-	-	-	HMMPfam_PRELI
SEPT9	10801	genome.wustl.edu	37	17	75398150	75398150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113491.1	+1	reviewed	p.R29I	1.000	33	0%	33	30.3%	72	31.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76451914	76451914	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000389840	-1	known	p.V3314L	0.989	30	0%	43	44.2%	0	-	benign(0.333)	deleterious(0)	deleterious(0.549)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76570846	76570846	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000389840	-1	known	p.Y98	0.014	148	0%	130	44.6%	0	-	-	-	-	NULL
CYTH1	9267	genome.wustl.edu	37	17	76694959	76694959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004762.2	-1	reviewed	p.F214L	1.000	243	0%	94	52.1%	16	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
USP36	57602	genome.wustl.edu	37	17	76825008	76825008	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025090.3	-1	validated	p.K186T	1.000	66	0%	33	60.6%	9	66.6%	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	HMMPfam_UCH,superfamily_SSF54001
LGALS3BP	3959	genome.wustl.edu	37	17	76967757	76967757	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005567.3	-1	reviewed	p.S553	0.003	26	0%	39	43.6%	380	28.6%	-	-	-	NULL
ENGASE	64772	genome.wustl.edu	37	17	77080653	77080653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042573.1	+1	validated	p.K492N	0.000	24	0%	76	51.3%	5	20%	benign(0.019)	tolerated(0.28)	neutral(0.033)	NULL
GAA	2548	genome.wustl.edu	37	17	78078488	78078488	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000152.3	+1	reviewed	p.F35V	0.000	10	0%	15	46.7%	13	69.2%	benign(0.003)	tolerated(0.22)	neutral(0.042)	NULL
RNF213	57674	genome.wustl.edu	37	17	78263500	78263500	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020954.2	+1	validated	p.E326*	0.000	50	0%	98	43.9%	4	0%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78310129	78310129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508628	+1	known	p.K1493R	0.000	109	0%	56	51.8%	4	75%	benign(0.132)	tolerated(0.35)	neutral(0.032)	NULL
RNF213	57674	genome.wustl.edu	37	17	78343456	78343456	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508628	+1	known	p.R4104	0.000	138	0.7%	110	53.6%	12	0%	-	-	-	NULL
ENDOV	284131	genome.wustl.edu	37	17	78397381	78397381	+	Missense_Mutation	SNP	G	G	T	rs114008153	byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173627.3	+1	validated	p.K155N	1.000	23	0%	46	37%	4	50%	-	-	-	HMMPfam_Endonuclease_5
ENDOV	284131	genome.wustl.edu	37	17	78403579	78403579	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173627.3	+1	validated	p.P262	0.276	13	0%	17	35.3%	1	0%	-	-	-	NULL
RPTOR	57521	genome.wustl.edu	37	17	78704479	78704479	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020761.2	+1	reviewed	p.F209	0.301	178	0%	38	44.7%	9	33.3%	-	-	-	NULL
BAIAP2	10458	genome.wustl.edu	37	17	79031768	79031768	+	Splice_Site	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017451.2	+1	reviewed	e3+1	1.000	6	0.000	11	0.545	1	100%	-	-	-	-
BAHCC1	57597	genome.wustl.edu	37	17	79427566	79427566	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080519.2	+1	inferred	p.L1957I	1.000	13	0%	12	50%	0	-	-	-	-	NULL
C17orf70	80233	genome.wustl.edu	37	17	79517623	79517623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025161.5	-1	validated	p.E148D	0.000	4	0.000	19	0.474	20	20%	benign(0.124)	tolerated(0.62)	neutral(0.014)	NULL
P4HB	5034	genome.wustl.edu	37	17	79803535	79803535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000918.3	-1	reviewed	p.V421I	0.360	36	0%	99	37.4%	1794	45.5%	benign(0.015)	tolerated(0.7)	neutral(0.003)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ALYREF	10189	genome.wustl.edu	37	17	79847092	79847092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005782.3	-1	reviewed	p.K161N	0.937	38	0%	50	46%	470	47%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
CD7	924	genome.wustl.edu	37	17	80273278	80273278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006137.6	-1	reviewed	p.K214N	0.002	22	0%	26	42.3%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
WDR45L	56270	genome.wustl.edu	37	17	80574407	80574407	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019613.3	-1	reviewed	p.A307	0.140	99	0%	76	42.1%	155	49%	-	-	-	superfamily_WD40 repeat-like
FN3K	64122	genome.wustl.edu	37	17	80708415	80708415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022158.3	+1	validated	p.F238L	1.000	34	0%	38	52.6%	63	39.6%	possibly_damaging(0.854)	deleterious(0.01)	deleterious(0.735)	superfamily_Kinase_like,HMMPfam_Fructosamin_kin
ZNF750	79755	genome.wustl.edu	37	17	80788991	80788991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024702.2	-1	reviewed	p.P447L	0.000	83	0%	51	58.8%	1	100%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
ENOSF1	55556	genome.wustl.edu	37	18	697305	697305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_202758.2	-1	validated	p.K103E	0.001	96	0%	99	36.4%	33	33.3%	benign(0)	tolerated(1)	-	HMMPfam_MR_MLE_N,superfamily_SSF54826
LOC441806	441806	genome.wustl.edu	37	18	856669	856669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344135.1	+1	model	p.R19H	1.000	58	0%	21	38.1%	0	-	-	-	-	HMMPfam_SAC3_GANP
METTL4	64863	genome.wustl.edu	37	18	2563854	2563854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022840.3	-1	validated	p.R134L	0.986	294	0%	182	42.3%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2722530	2722530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015295.2	+1	validated	p.E824D	0.987	377	0%	197	36%	8	62.5%	possibly_damaging(0.808)	tolerated(0.46)	neutral(0.316)	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2784502	2784502	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015295.2	+1	validated	p.R1868*	1.000	83	0%	51	47.1%	20	25%	-	-	-	superfamily_Smc hinge domain
EMILIN2	84034	genome.wustl.edu	37	18	2892402	2892402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032048.2	+1	validated	p.K759N	1.000	54	0%	56	33.9%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LPIN2	9663	genome.wustl.edu	37	18	2921630	2921630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014646.2	-1	reviewed	p.K781N	1.000	62	0%	112	44.6%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784
MYOM1	8736	genome.wustl.edu	37	18	3142039	3142039	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003803.3	-1	reviewed	p.P641	0.999	58	0%	24	50%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DLGAP1	9229	genome.wustl.edu	37	18	3582087	3582087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004746.2	-1	provisional	p.S584Y	1.000	509	0.2%	199	52.3%	2	0%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
ZFP161	7541	genome.wustl.edu	37	18	5291055	5291055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143823.1	-1	validated	p.R384S	0.972	176	0%	144	36.8%	31	67.7%	benign(0.116)	tolerated(0.14)	neutral(0.259)	superfamily_SSF57667
EPB41L3	23136	genome.wustl.edu	37	18	5438079	5438079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012307.2	-1	provisional	p.K187T	1.000	226	0%	174	47.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_SM00295,superfamily_Ubiquitin-like
L3MBTL4	91133	genome.wustl.edu	37	18	6080934	6080934	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173464.3	-1	validated	p.K464Q	1.000	331	0%	137	36.5%	1	0%	possibly_damaging(0.537)	tolerated(0.17)	neutral(0.240)	NULL
ARHGAP28	79822	genome.wustl.edu	37	18	6882179	6882179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010000.1	+1	validated	p.F286C	1.000	294	0%	174	45.4%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
LAMA1	284217	genome.wustl.edu	37	18	6947197	6947197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005559.2	-1	validated	p.V2937L	1.000	124	0%	49	59.2%	16	25%	possibly_damaging(0.881)	tolerated(0.25)	neutral(0.381)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
LAMA1	284217	genome.wustl.edu	37	18	6973065	6973065	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005559.2	-1	validated	p.G2255	0.991	329	0%	249	43.8%	7	0%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
PTPRM	5797	genome.wustl.edu	37	18	7926607	7926607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105244.1	+1	reviewed	p.N197D	1.000	216	0%	51	29.4%	10	20%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMSmart_SM00409,superfamily_Immunoglobulin
PTPRM	5797	genome.wustl.edu	37	18	8076502	8076502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105244.1	+1	reviewed	p.E497D	1.000	194	0%	51	43.1%	8	0%	benign(0.007)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PPP4R1	9989	genome.wustl.edu	37	18	9563405	9563405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042388.1	-1	validated	p.S573A	0.364	281	0%	182	48.9%	52	46.1%	benign(0.001)	tolerated(0.1)	neutral(0.286)	superfamily_ARM repeat
TXNDC2	84203	genome.wustl.edu	37	18	9886801	9886801	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098529.1	+1	validated	p.E109*	0.000	337	0%	115	47%	0	-	-	-	-	NULL
TXNDC2	84203	genome.wustl.edu	37	18	9887679	9887679	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098529.1	+1	validated	p.E401	0.000	274	0%	165	43%	0	-	-	-	-	NULL
PIEZO2	63895	genome.wustl.edu	37	18	10680239	10680239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000503781	-1	known	p.P418T	0.030	478	0%	233	46.8%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
PIEZO2	63895	genome.wustl.edu	37	18	10689712	10689712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000503781	-1	known	p.C324G	1.000	144	0%	37	32.4%	0	-	probably_damaging(0.99)	tolerated(0.16)	deleterious(0.501)	NULL
ENSG00000175388	0	genome.wustl.edu	37	18	10761037	10761037	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000383408	-1	known	p.R371*	0.997	81	0%	66	30.3%	0	-	-	-	-	NULL
ENSG00000175388	0	genome.wustl.edu	37	18	10762938	10762938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000383408	-1	known	p.F298L	1.000	106	0%	78	43.6%	0	-	possibly_damaging(0.666)	deleterious(0.02)	deleterious(0.619)	NULL
ENSG00000175388	0	genome.wustl.edu	37	18	10763065	10763065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000383408	-1	known	p.S256Y	1.000	79	1.3%	69	46.4%	0	-	benign(0.303)	deleterious(0.04)	neutral(0.443)	NULL
GNAL	2774	genome.wustl.edu	37	18	11753891	11753891	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182978.2	+1	validated	p.R191*	1.000	209	0%	294	47.3%	0	-	-	-	-	HMMPfam_G-alpha,superfamily_Transducn_insert,superfamily_SSF52540
MPPE1	65258	genome.wustl.edu	37	18	11889488	11889488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023075.4	-1	validated	p.A131D	1.000	91	0%	96	15.6%	34	11.7%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
IMPA2	3613	genome.wustl.edu	37	18	11999051	11999051	+	Splice_Site	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014214.1	+1	validated	e2-2	0.995	171	0%	135	43.7%	0	-	-	-	-	-
CEP76	79959	genome.wustl.edu	37	18	12701088	12701088	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024899.2	-1	provisional	p.E30*	1.000	121	0%	177	46.3%	9	55.5%	-	-	-	NULL
SEH1L	81929	genome.wustl.edu	37	18	12984160	12984160	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013437.1	+1	reviewed	p.Q347	1.000	106	0%	193	42.5%	46	41.3%	-	-	-	NULL
CEP192	55125	genome.wustl.edu	37	18	13069848	13069848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032142.3	+1	validated	p.E1127K	0.989	123	0%	72	52.8%	7	14.2%	possibly_damaging(0.448)	tolerated(0.07)	neutral(0.466)	NULL
CEP192	55125	genome.wustl.edu	37	18	13092456	13092456	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032142.3	+1	validated	p.E1466*	1.000	343	0%	158	47.5%	7	14.2%	-	-	-	NULL
CEP192	55125	genome.wustl.edu	37	18	13092465	13092465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032142.3	+1	validated	p.D1469Y	0.715	351	0%	156	35.3%	8	87.5%	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
CEP192	55125	genome.wustl.edu	37	18	13099491	13099491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032142.3	+1	validated	p.L1596I	1.000	231	0%	233	48.5%	9	88.8%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
C18orf1	753	genome.wustl.edu	37	18	13645228	13645228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181481.3	+1	validated	p.E165K	1.000	82	0%	48	27.1%	0	-	possibly_damaging(0.72)	deleterious(0.02)	deleterious(0.644)	NULL
NF1P5	4768	genome.wustl.edu	37	18	14156235	14156235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000418350	-1	known	p.I88S	0.011	9	0.000	42	0.405	0	-	-	-	-	NULL
LOC729774	729774	genome.wustl.edu	37	18	14361614	14361614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001131264.2	-1	model	p.N122S	0.027	73	0%	18	66.7%	1	0%	-	-	-	NULL
LOC729774	729774	genome.wustl.edu	37	18	14361617	14361617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001131264.2	-1	model	p.S121N	0.010	71	0%	20	35%	0	-	-	-	-	NULL
LOC646359	646359	genome.wustl.edu	37	18	14377800	14377800	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929288.3	-1	model	p.R321	0.408	14	0%	46	47.8%	6	0%	-	-	-	NULL
LOC646359	646359	genome.wustl.edu	37	18	14377904	14377904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929288.3	-1	model	p.L287I	0.852	28	0%	75	46.7%	0	-	-	-	-	NULL
LOC646359	646359	genome.wustl.edu	37	18	14378050	14378050	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_929288.3	-1	model	p.S238*	0.972	31	0%	92	39.1%	3	0%	-	-	-	HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain
POTEC	388468	genome.wustl.edu	37	18	14530524	14530524	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137671.1	-1	validated	p.E362*	0.038	83	0%	61	31.1%	0	-	-	-	-	HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEC	388468	genome.wustl.edu	37	18	14537853	14537853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137671.1	-1	validated	p.L253V	0.113	478	0%	348	39.1%	0	-	benign(0.361)	tolerated(0.28)	neutral(0.146)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEC	388468	genome.wustl.edu	37	18	14542891	14542891	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001137671.1	-1	validated	p.D85	0.015	126	0%	147	25.9%	0	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14778044	14778044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145029.1	+1	validated	p.D464Y	0.020	71	0%	88	48.9%	0	-	unknown(0)	deleterious(0)	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14782572	14782572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145029.1	+1	validated	p.S510F	0.000	63	0%	113	53.1%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14797803	14797803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145029.1	+1	validated	p.S660Y	0.002	196	0%	298	46.6%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14850242	14850242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145029.1	+1	validated	p.R1023I	0.999	28	0%	51	43.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ROCK1	6093	genome.wustl.edu	37	18	18564337	18564337	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005406.2	-1	reviewed	p.E822*	1.000	390	0%	187	44.4%	4	50%	-	-	-	NULL
ROCK1	6093	genome.wustl.edu	37	18	18566915	18566915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005406.2	-1	reviewed	p.D767G	1.000	217	0%	152	34.9%	3	33.3%	benign(0.042)	deleterious(0.01)	neutral(0.408)	NULL
ROCK1	6093	genome.wustl.edu	37	18	18595406	18595406	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005406.2	-1	reviewed	p.E466*	1.000	333	0%	386	43.3%	4	25%	-	-	-	HMMPfam_HR1
GREB1L	80000	genome.wustl.edu	37	18	18981185	18981185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142966.1	+1	provisional	p.L203V	1.000	216	0%	101	38.6%	1	100%	unknown(0)	deleterious(0)	-	NULL
ESCO1	114799	genome.wustl.edu	37	18	19110415	19110415	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052911.2	-1	validated	p.E804	1.000	31	0%	34	52.9%	14	35.7%	-	-	-	NULL
RBBP8	5932	genome.wustl.edu	37	18	20576369	20576369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002894.2	+1	reviewed	p.D658Y	1.000	80	0%	128	53.1%	44	47.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CABLES1	91768	genome.wustl.edu	37	18	20774445	20774445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001100619.2	+1	validated	p.K317N	1.000	117	0%	124	40.3%	19	63.1%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
RIOK3	8780	genome.wustl.edu	37	18	21042959	21042959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003831.3	+1	reviewed	p.S32Y	1.000	203	0%	145	37.2%	14	35.7%	possibly_damaging(0.849)	deleterious(0.03)	deleterious(0.691)	NULL
NPC1	4864	genome.wustl.edu	37	18	21134925	21134925	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000271.4	-1	reviewed	p.I450	0.981	114	0%	65	52.3%	4	75%	-	-	-	HMMPfam_Patched
LAMA3	3909	genome.wustl.edu	37	18	21330988	21330988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198129.1	+1	reviewed	p.R264I	0.998	198	0%	75	42.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_N,HMMSmart_SM00136
LAMA3	3909	genome.wustl.edu	37	18	21413848	21413848	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198129.1	+1	reviewed	p.V960	0.000	191	0%	47	40.4%	4	0%	-	-	-	NULL
LAMA3	3909	genome.wustl.edu	37	18	21419776	21419776	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198129.1	+1	reviewed	p.E1073D	0.996	154	0%	65	49.2%	6	16.6%	benign(0.003)	tolerated(0.54)	neutral(0.007)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21483939	21483939	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198129.1	+1	reviewed	p.E2121*	0.978	84	0%	78	47.4%	6	33.3%	-	-	-	NULL
LAMA3	3909	genome.wustl.edu	37	18	21508609	21508609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198129.1	+1	reviewed	p.F2772L	1.000	231	0%	60	40%	15	73.3%	benign(0.109)	deleterious(0)	neutral(0.453)	superfamily_Concanavalin A-like lectins/glucanases
ZNF521	25925	genome.wustl.edu	37	18	22775134	22775134	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015461.2	-1	validated	p.N1216	1.000	160	0%	29	37.9%	2	50%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CHST9	83539	genome.wustl.edu	37	18	24496989	24496989	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031422.4	-1	validated	p.Y189F	0.898	317	0.6%	89	41.6%	2	0%	probably_damaging(0.983)	tolerated(0.18)	deleterious(0.485)	HMMPfam_Sulfotransfer_2
CDH2	1000	genome.wustl.edu	37	18	25589736	25589736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001792.3	-1	reviewed	p.S216L	1.000	130	0%	15	33.3%	21	47.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28584186	28584186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001941.3	-1	reviewed	p.A679T	0.000	214	0%	56	44.6%	1	0%	benign(0.069)	tolerated(0.6)	neutral(0.009)	superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28712575	28712575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024421.2	-1	reviewed	p.N732D	1.000	233	0%	115	14.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
DSC1	1823	genome.wustl.edu	37	18	28728491	28728491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024421.2	-1	reviewed	p.I248L	0.000	408	0%	115	41.7%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_Cadherin,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28906914	28906914	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001942.2	+1	reviewed	p.F54	0.656	71	0%	28	67.9%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28911802	28911802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001942.2	+1	reviewed	p.R219Q	0.989	63	0%	33	48.5%	0	-	possibly_damaging(0.829)	tolerated(0.26)	neutral(0.349)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28925994	28925994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001942.2	+1	reviewed	p.L645M	0.001	206	0%	89	39.3%	0	-	benign(0.013)	tolerated(0.24)	neutral(0.038)	HMMPfam_Cadherin_C
DSG4	147409	genome.wustl.edu	37	18	28968937	28968937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134453.1	+1	reviewed	p.S158L	0.861	96	0%	30	40%	0	-	possibly_damaging(0.551)	deleterious(0.01)	deleterious(0.593)	superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29039837	29039837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001944.2	+1	reviewed	p.D183Y	1.000	146	0%	30	53.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSG3	1830	genome.wustl.edu	37	18	29041235	29041235	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001944.2	+1	reviewed	p.R287*	0.708	145	0%	73	37%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
DSG2	1829	genome.wustl.edu	37	18	29102127	29102127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001943.3	+1	reviewed	p.S202Y	0.826	134	0%	112	46.4%	34	55.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSG2	1829	genome.wustl.edu	37	18	29118764	29118764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001943.3	+1	reviewed	p.I568L	0.942	269	0%	96	41.7%	55	45.4%	benign(0.022)	tolerated(0.32)	neutral(0.025)	superfamily_Cadherin
TRAPPC8	22878	genome.wustl.edu	37	18	29477804	29477804	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014939.3	-1	validated	p.K514T	1.000	112	0%	90	11.1%	20	15%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_TPR-like
TRAPPC8	22878	genome.wustl.edu	37	18	29489639	29489639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014939.3	-1	validated	p.E286K	1.000	97	0%	118	44.9%	8	75%	benign(0.012)	tolerated(0.49)	neutral(0.011)	NULL
MEP1B	4225	genome.wustl.edu	37	18	29772749	29772749	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005925.2	+1	validated	p.D47A	1.000	430	0%	205	48.3%	0	-	possibly_damaging(0.922)	deleterious(0.02)	deleterious(0.754)	NULL
C18orf34	374864	genome.wustl.edu	37	18	30672809	30672809	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105528.1	-1	validated	p.I768M	0.000	77	0%	50	48%	0	-	benign(0.012)	tolerated(0.17)	neutral(0.059)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31314329	31314329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030632.1	+1	provisional	p.K344N	1.000	58	0%	61	42.6%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31319405	31319405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030632.1	+1	provisional	p.E679D	0.965	137	0%	78	46.2%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31320304	31320304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030632.1	+1	provisional	p.R979I	1.000	44	0%	40	45%	1	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31324730	31324730	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030632.1	+1	provisional	p.K1640Q	0.640	49	0%	47	51.1%	0	-	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31325754	31325754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030632.1	+1	provisional	p.P1981L	0.998	37	0%	18	77.8%	0	-	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
NOL4	8715	genome.wustl.edu	37	18	31538258	31538258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003787.3	-1	validated	p.S394L	0.980	322	0%	44	47.7%	0	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	NULL
ZSCAN30	100101467	genome.wustl.edu	37	18	32833853	32833853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112734.2	-1	validated	p.R349I	1.000	139	0%	98	44.9%	11	72.7%	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZSCAN30	100101467	genome.wustl.edu	37	18	32834184	32834184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001112734.2	-1	validated	p.K239Q	0.000	247	0%	126	42.9%	9	44.4%	benign(0.026)	tolerated(0.5)	neutral(0.011)	NULL
ZNF396	252884	genome.wustl.edu	37	18	32948372	32948372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145756.2	-1	validated	p.K315N	0.002	101	0%	79	83.5%	1	0%	possibly_damaging(0.952)	-	-	NULL
ZNF396	252884	genome.wustl.edu	37	18	32949578	32949578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145756.2	-1	validated	p.K203N	0.016	217	0%	180	47.2%	5	60%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	NULL
C18orf21	83608	genome.wustl.edu	37	18	33558858	33558858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031446.3	+1	validated	p.K184N	1.000	102	0%	132	41.7%	30	56.6%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SLC39A6	25800	genome.wustl.edu	37	18	33702064	33702064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012319.3	-1	validated	p.V437A	1.000	204	0%	174	40.2%	40	47.5%	benign(0.004)	tolerated(0.31)	neutral(0.027)	HMMPfam_Zip
FHOD3	80206	genome.wustl.edu	37	18	34261521	34261521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025135.2	+1	validated	p.R478I	1.000	321	0%	102	39.2%	4	25%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
PIK3C3	5289	genome.wustl.edu	37	18	39535271	39535271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002647.2	+1	validated	p.E5D	0.999	124	0%	78	43.6%	3	0%	benign(0)	tolerated(1)	-	NULL
PIK3C3	5289	genome.wustl.edu	37	18	39620682	39620682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002647.2	+1	validated	p.L694I	1.000	273	0%	150	45.3%	15	73.3%	benign(0.4)	tolerated(0.26)	neutral(0.163)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
SETBP1	26040	genome.wustl.edu	37	18	42449204	42449204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015559.2	+1	validated	p.A166T	1.000	208	0%	65	52.3%	4	50%	benign(0.022)	tolerated(0.55)	neutral(0.008)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42529989	42529989	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015559.2	+1	validated	p.S228	0.953	123	0%	30	33.3%	3	66.6%	-	-	-	NULL
SLC14A1	6563	genome.wustl.edu	37	18	43319138	43319138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128588.3	+1	reviewed	p.S281Y	0.980	104	0%	55	45.5%	5	0%	benign(0.061)	deleterious(0.02)	neutral(0.387)	HMMPfam_UT
EPG5	57724	genome.wustl.edu	37	18	43437926	43437926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020964.2	-1	validated	p.R2445Q	0.986	92	0%	42	50%	11	27.2%	possibly_damaging(0.764)	tolerated(0.34)	neutral(0.306)	NULL
EPG5	57724	genome.wustl.edu	37	18	43459134	43459134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020964.2	-1	validated	p.R1905W	1.000	66	0%	91	45.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPG5	57724	genome.wustl.edu	37	18	43467725	43467725	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020964.2	-1	validated	p.I1700	1.000	203	0%	88	46.6%	4	50%	-	-	-	NULL
EPG5	57724	genome.wustl.edu	37	18	43523231	43523231	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020964.2	-1	validated	p.I613M	1.000	509	0%	203	48.8%	2	0%	probably_damaging(0.955)	tolerated(0.09)	deleterious(0.695)	NULL
ATP5A1	498	genome.wustl.edu	37	18	43669872	43669872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001937.1	-1	reviewed	p.T134A	1.000	229	0%	123	38.2%	575	44.1%	benign(0.368)	deleterious(0.01)	deleterious(0.523)	HMMPfam_ATP-synt_ab_N,superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase
ATP5A1	498	genome.wustl.edu	37	18	43671662	43671662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001937.1	-1	reviewed	p.S99P	1.000	60	0%	54	38.9%	494	53.8%	possibly_damaging(0.634)	tolerated(0.51)	neutral(0.231)	HMMPfam_ATP-synt_ab_N,superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase
ATP5A1	498	genome.wustl.edu	37	18	43675021	43675021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001937.1	-1	reviewed	p.T46N	0.998	79	0%	144	43.1%	285	51.5%	benign(0.03)	tolerated(0.15)	neutral(0.242)	NULL
RNF165	494470	genome.wustl.edu	37	18	44035937	44035937	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152470.2	+1	validated	p.R273*	1.000	229	0%	98	45.9%	0	-	-	-	-	superfamily_SSF57850
LOXHD1	125336	genome.wustl.edu	37	18	44065104	44065104	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145472.2	-1	reviewed	p.I909	0.987	217	0%	95	49.5%	1	0%	-	-	-	HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44102106	44102106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144612.6	-1	reviewed	p.F1403L	0.993	146	0%	38	36.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44102261	44102261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144612.6	-1	reviewed	p.Y1352H	1.000	90	0%	43	32.6%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44114381	44114381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144612.6	-1	reviewed	p.R1099W	1.000	410	0%	129	34.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PLAT,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44137395	44137395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144612.6	-1	reviewed	p.R814C	1.000	544	0%	140	43.6%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44137401	44137401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144612.6	-1	reviewed	p.R812W	0.998	557	0.2%	145	38.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44140268	44140268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144612.6	-1	reviewed	p.D669N	0.434	160	0%	69	36.2%	0	-	benign(0.039)	deleterious(0.02)	neutral(0.385)	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44559623	44559623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016427.2	-1	reviewed	p.E671D	0.000	57	0%	79	39.2%	0	-	benign(0.247)	tolerated(0.12)	neutral(0.286)	NULL
KATNAL2	83473	genome.wustl.edu	37	18	44589421	44589421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031303.2	+1	validated	p.D138N	0.284	161	0%	44	40.9%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
SMAD2	4087	genome.wustl.edu	37	18	45371763	45371763	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003652.2	-1	reviewed	p.R410	1.000	58	0%	49	14.3%	93	19.3%	-	-	-	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
DYM	54808	genome.wustl.edu	37	18	46690089	46690089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017653.3	-1	reviewed	p.S510L	0.999	140	0%	54	46.3%	72	43%	benign(0.012)	tolerated(0.3)	neutral(0.029)	HMMPfam_Dymeclin
RPL17	6139	genome.wustl.edu	37	18	47017915	47017915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000985.3	-1	reviewed	p.E9D	1.000	372	0%	319	46.4%	1633	47.6%	benign(0.002)	tolerated(0.52)	neutral(0.009)	superfamily_Ribosomal protein L22
MYO5B	4645	genome.wustl.edu	37	18	47389647	47389647	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080467.2	-1	reviewed	p.V1298	0.858	93	0%	78	46.2%	53	56.6%	-	-	-	NULL
MBD1	4152	genome.wustl.edu	37	18	47802306	47802306	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015846.3	-1	reviewed	p.C188S	1.000	160	0%	37	40.5%	50	44%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-CXXC
MBD1	4152	genome.wustl.edu	37	18	47806299	47806299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015846.3	-1	reviewed	p.R22C	1.000	107	0%	22	36.4%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
ME2	4200	genome.wustl.edu	37	18	48422202	48422202	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002396.4	+1	reviewed	p.R4	0.948	136	0%	107	41.1%	18	77.7%	-	-	-	NULL
ME2	4200	genome.wustl.edu	37	18	48434524	48434524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002396.4	+1	reviewed	p.R67Q	1.000	104	0%	82	45.1%	22	36.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF53223
ELAC1	55520	genome.wustl.edu	37	18	48510717	48510717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018696.2	+1	validated	p.E137*	0.884	107	0%	73	38.4%	5	40%	-	-	-	superfamily_SSF56281
DCC	1630	genome.wustl.edu	37	18	50734120	50734120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005215.3	+1	reviewed	p.F598L	0.999	198	0%	125	31.2%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DCC	1630	genome.wustl.edu	37	18	50832018	50832018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005215.3	+1	reviewed	p.R661Q	1.000	61	0%	22	31.8%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MBD2	8932	genome.wustl.edu	37	18	51715287	51715287	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003927.3	-1	reviewed	p.K266T	1.000	325	0%	271	42.4%	195	47.6%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
C18orf54	162681	genome.wustl.edu	37	18	51888038	51888038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173529.4	+1	validated	p.K103N	0.000	104	0%	68	33.8%	0	-	possibly_damaging(0.545)	deleterious(0.03)	deleterious(0.549)	NULL
TCF4	6925	genome.wustl.edu	37	18	52899757	52899757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083962.1	-1	reviewed	p.I544M	1.000	129	0%	80	40%	28	42.8%	possibly_damaging(0.795)	tolerated(0.2)	neutral(0.347)	NULL
TCF4	6925	genome.wustl.edu	37	18	53252521	53252521	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083962.1	-1	reviewed	p.F45	1.000	52	0%	86	45.3%	13	46.1%	-	-	-	NULL
TXNL1	9352	genome.wustl.edu	37	18	54281785	54281785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004786.2	-1	validated	p.R202Q	1.000	211	0.5%	151	42.4%	176	48.8%	benign(0.096)	tolerated(0.2)	neutral(0.056)	HMMPfam_DUF1000
WDR7	23335	genome.wustl.edu	37	18	54339828	54339828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015285.2	+1	reviewed	p.T28A	1.000	113	0%	33	39.4%	2	50%	unknown(0)	deleterious(0.03)	-	HMMSmart_SM00320,superfamily_Prolyl oligopeptidase N-terminal domain,HMMPfam_WD40
WDR7	23335	genome.wustl.edu	37	18	54398698	54398698	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015285.2	+1	reviewed	p.S620*	0.998	246	0%	59	45.8%	3	0%	-	-	-	NULL
WDR7	23335	genome.wustl.edu	37	18	54605869	54605869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015285.2	+1	reviewed	p.L1313I	1.000	129	0%	72	54.2%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ST8SIA3	51046	genome.wustl.edu	37	18	55024185	55024185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015879.2	+1	validated	p.S115Y	1.000	85	0%	102	39.2%	0	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_Glyco_transf_29
FECH	2235	genome.wustl.edu	37	18	55221567	55221567	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012515.2	-1	reviewed	p.P340	0.009	190	0%	141	53.9%	29	41.3%	-	-	-	HMMPfam_Ferrochelatase,superfamily_Chelatase
NARS	4677	genome.wustl.edu	37	18	55282936	55282936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004539.3	-1	validated	p.K93N	1.000	406	0%	608	46.4%	137	40.8%	benign(0.353)	tolerated(0.13)	neutral(0.364)	superfamily_Nucleic_acid_OB
ATP8B1	5205	genome.wustl.edu	37	18	55322485	55322485	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005603.4	-1	reviewed	p.N958H	1.000	114	0%	92	43.5%	14	71.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF81665
ATP8B1	5205	genome.wustl.edu	37	18	55336654	55336654	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005603.4	-1	reviewed	p.E665*	1.000	92	0%	128	38.3%	8	25%	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
LOC284288	284288	genome.wustl.edu	37	18	55505831	55505831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_210365.1	+1	model	p.K42Q	1.000	13	0%	31	41.9%	0	-	-	-	-	HMMPfam_Ribosomal_L24e,HMMSmart_SM00746,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ALPK2	115701	genome.wustl.edu	37	18	56196326	56196326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052947.3	-1	validated	p.R1833I	1.000	147	0%	155	12.3%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ALPK2	115701	genome.wustl.edu	37	18	56202169	56202169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052947.3	-1	validated	p.K1750N	0.138	331	0%	300	27%	2	0%	benign(0.373)	deleterious(0.01)	deleterious(0.524)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56204672	56204672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052947.3	-1	validated	p.N916T	0.041	132	0%	80	45%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CCBE1	147372	genome.wustl.edu	37	18	57106807	57106807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133459.3	-1	reviewed	p.P307S	0.846	172	0%	97	44.3%	1	100%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMPfam_Collagen
MC4R	4160	genome.wustl.edu	37	18	58038701	58038701	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005912.2	-1	reviewed	p.N294K	1.000	144	0%	47	14.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC100287255	100287255	genome.wustl.edu	37	18	60985970	60985970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343614.1	+1	model	p.R254I	0.001	9	0.000	23	0.391	1	0%	-	-	-	NULL
SERPINB12	89777	genome.wustl.edu	37	18	61225624	61225624	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080474.1	+1	provisional	p.E70*	0.005	172	0%	64	34.4%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB13	5275	genome.wustl.edu	37	18	61255961	61255961	+	Missense_Mutation	SNP	G	G	T	rs35760977		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012397.3	+1	validated	p.K20N	0.003	135	0%	34	41.2%	0	-	benign(0.026)	tolerated(0.6)	neutral(0.005)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB13	5275	genome.wustl.edu	37	18	61256938	61256938	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012397.3	+1	validated	p.E72*	0.981	211	0%	109	47.7%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB13	5275	genome.wustl.edu	37	18	61261694	61261694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012397.3	+1	validated	p.K193T	0.946	263	0%	162	36.4%	1	0%	benign(0.119)	tolerated(0.16)	neutral(0.069)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB13	5275	genome.wustl.edu	37	18	61262415	61262415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012397.3	+1	validated	p.E256D	1.000	194	0%	86	45.3%	0	-	probably_damaging(0.957)	deleterious(0.05)	deleterious(0.746)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB3	6317	genome.wustl.edu	37	18	61325786	61325786	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006919.2	-1	validated	p.R144*	0.008	416	0%	89	47.2%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB11	89778	genome.wustl.edu	37	18	61390295	61390295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080475.2	+1	validated	p.E281*	0.052	148	0%	36	61.1%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB2	5055	genome.wustl.edu	37	18	61570494	61570494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143818.1	+1	validated	p.K401N	0.015	103	0%	20	40%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CDH7	1005	genome.wustl.edu	37	18	63477026	63477026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004361.2	+1	reviewed	p.E99D	1.000	173	0%	40	50%	0	-	probably_damaging(0.995)	tolerated(0.43)	deleterious(0.471)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH7	1005	genome.wustl.edu	37	18	63530064	63530064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004361.2	+1	reviewed	p.Q592R	1.000	152	0%	43	48.8%	0	-	benign(0.01)	tolerated(0.64)	neutral(0.004)	superfamily_Cadherin-like
CDH19	28513	genome.wustl.edu	37	18	64172102	64172102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021153.2	-1	reviewed	p.R756C	1.000	66	0%	16	43.8%	0	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cadherin_C
CDH19	28513	genome.wustl.edu	37	18	64218334	64218334	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021153.2	-1	reviewed	p.E258*	0.989	100	0%	21	52.4%	0	-	-	-	-	superfamily_Cadherin
CDH19	28513	genome.wustl.edu	37	18	64235726	64235726	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021153.2	-1	reviewed	p.S139	0.987	158	0%	26	42.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DSEL	92126	genome.wustl.edu	37	18	65180403	65180403	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032160.2	-1	validated	p.G491	0.971	195	0%	100	39%	2	50%	-	-	-	NULL
TMX3	54495	genome.wustl.edu	37	18	66364516	66364516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019022.3	-1	validated	p.E173*	1.000	57	0%	119	38.7%	7	28.5%	-	-	-	NULL
CD226	10666	genome.wustl.edu	37	18	67534630	67534630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006566.2	-1	reviewed	p.R283I	0.005	293	0%	255	49%	0	-	benign(0.118)	tolerated(0.06)	neutral(0.332)	NULL
NETO1	81832	genome.wustl.edu	37	18	70417353	70417353	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138966.2	-1	reviewed	p.I495	0.525	409	0%	53	43.4%	0	-	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72343501	72343501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017757.2	+1	reviewed	p.S176G	0.033	71	0%	71	46.5%	2	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72632632	72632632	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017757.2	+1	reviewed	p.L1804	1.000	212	0%	49	49%	5	0%	-	-	-	NULL
ZNF236	7776	genome.wustl.edu	37	18	74616393	74616393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007345.3	+1	validated	p.F649C	1.000	199	0%	189	46.6%	2	0%	probably_damaging(0.984)	tolerated(0.18)	deleterious(0.486)	NULL
ZNF236	7776	genome.wustl.edu	37	18	74635035	74635035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007345.3	+1	validated	p.R1187Q	0.904	152	0%	149	45.6%	7	42.8%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL3	27164	genome.wustl.edu	37	18	76753938	76753938	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_171999.2	+1	validated	p.F649	0.981	9	0.000	9	0.556	0	-	-	-	-	NULL
ATP9B	374868	genome.wustl.edu	37	18	76856500	76856500	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198531.3	+1	validated	p.A48	0.958	339	0%	88	47.7%	1	0%	-	-	-	NULL
ATP9B	374868	genome.wustl.edu	37	18	76870478	76870478	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198531.3	+1	validated	p.K139N	0.998	157	0%	85	48.2%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP9B	374868	genome.wustl.edu	37	18	77013475	77013475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198531.3	+1	validated	p.F401S	1.000	534	0%	317	12.6%	1	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_E1-E2_ATPase
NFATC1	4772	genome.wustl.edu	37	18	77221339	77221339	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172387.1	+1	reviewed	p.A631	0.346	45	0%	50	38%	12	33.3%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
NFATC1	4772	genome.wustl.edu	37	18	77227454	77227454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172387.1	+1	reviewed	p.S642Y	0.178	33	0%	53	37.7%	14	57.1%	possibly_damaging(0.922)	tolerated(0.59)	neutral(0.376)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
CTDP1	9150	genome.wustl.edu	37	18	77464803	77464803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004715.3	+1	reviewed	p.M220V	0.998	37	0%	15	53.3%	13	92.3%	benign(0.047)	tolerated(0.34)	neutral(0.026)	HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like
CTDP1	9150	genome.wustl.edu	37	18	77472971	77472971	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004715.3	+1	reviewed	e7-1	1.000	65	0%	116	37.1%	1	100%	-	-	-	-
POLRMT	5442	genome.wustl.edu	37	19	629990	629990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005035.3	-1	reviewed	p.K124N	0.086	15	0%	14	42.9%	21	52.3%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
MUM1	84939	genome.wustl.edu	37	19	1360279	1360279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032853.3	+1	validated	p.R121Q	0.000	42	0%	47	57.4%	15	40%	benign(0.082)	tolerated(0.49)	neutral(0.017)	NULL
DAZAP1	26528	genome.wustl.edu	37	19	1418240	1418240	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018959.2	+1	reviewed	p.V36	0.455	78	1.3%	51	47.1%	76	35.5%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MBD3	53615	genome.wustl.edu	37	19	1584602	1584602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003926.5	-1	reviewed	p.I115M	0.996	41	0%	42	40.5%	100	52%	benign(0.19)	deleterious(0.01)	neutral(0.424)	NULL
ATP8B3	148229	genome.wustl.edu	37	19	1805409	1805409	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138813.2	-1	reviewed	p.E290*	0.004	48	0%	138	39.9%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
TMPRSS9	360200	genome.wustl.edu	37	19	2408369	2408369	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182973.1	+1	provisional	p.T252	0.000	21	0%	17	29.4%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZNF556	80032	genome.wustl.edu	37	19	2877695	2877695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024967.1	+1	provisional	p.R247C	0.000	50	0%	47	53.2%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF77	58492	genome.wustl.edu	37	19	2934246	2934246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021217.2	-1	validated	p.E293D	1.000	419	0%	236	44.9%	7	71.4%	benign(0.009)	deleterious(0.03)	neutral(0.365)	superfamily_SSF57667
TLE6	79816	genome.wustl.edu	37	19	2994930	2994930	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143986.1	+1	validated	p.D549	0.771	44	0%	11	36.4%	1	100%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
GIPC3	126326	genome.wustl.edu	37	19	3586496	3586496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133261.2	+1	validated	p.L77V	0.989	7	0.000	31	0.387	0	-	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	NULL
ZFR2	23217	genome.wustl.edu	37	19	3834831	3834831	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015174.1	-1	validated	p.F68	0.000	13	0%	13	61.5%	0	-	-	-	-	NULL
ATCAY	85300	genome.wustl.edu	37	19	3905638	3905638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033064.4	+1	reviewed	p.E115K	0.998	118	0%	70	47.1%	0	-	benign(0.325)	deleterious(0.03)	neutral(0.466)	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4216555	4216555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133475.1	+1	provisional	p.E466D	1.000	35	0%	33	12.1%	2	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
ANKRD24	170961	genome.wustl.edu	37	19	4216703	4216703	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133475.1	+1	provisional	p.R516*	0.000	44	0%	32	43.8%	1	0%	-	-	-	NULL
CHAF1A	10036	genome.wustl.edu	37	19	4429560	4429560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005483.2	+1	validated	p.K577R	0.476	89	0%	71	53.5%	61	47.5%	possibly_damaging(0.825)	tolerated(0.38)	neutral(0.330)	NULL
HDGFRP2	84717	genome.wustl.edu	37	19	4491801	4491801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001520.1	+1	reviewed	p.R216Q	0.957	15	0%	28	35.7%	87	45.9%	probably_damaging(0.963)	tolerated(0.18)	neutral(0.462)	NULL
DPP9	91039	genome.wustl.edu	37	19	4702661	4702661	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_139159.4	-1	reviewed	p.F279	0.984	29	0%	36	50%	20	30%	-	-	-	HMMPfam_DPPIV_N,superfamily_SSF82171
PTPRS	5802	genome.wustl.edu	37	19	5210733	5210733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002850.3	-1	reviewed	p.S1773L	1.000	34	0%	63	34.9%	203	49.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRS	5802	genome.wustl.edu	37	19	5265174	5265174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002850.3	-1	reviewed	p.D138G	1.000	256	0%	40	50%	77	49.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_I-set,superfamily_Immunoglobulin
SAFB2	9667	genome.wustl.edu	37	19	5610680	5610680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014649.2	-1	validated	p.D389Y	1.000	216	0%	461	39.9%	27	48.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF54928
CATSPERD	257062	genome.wustl.edu	37	19	5768218	5768218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152784.3	+1	validated	p.L533F	0.003	118	0%	38	42.1%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
C3	718	genome.wustl.edu	37	19	6678192	6678192	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000064.2	-1	reviewed	p.L1607	0.012	145	0%	61	50.8%	24	0%	-	-	-	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
C3	718	genome.wustl.edu	37	19	6702165	6702165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000064.2	-1	reviewed	p.L805M	0.916	144	0%	98	54.1%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_A2M
VAV1	7409	genome.wustl.edu	37	19	6829812	6829812	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005428.2	+1	reviewed	p.L427	0.795	280	0%	50	40%	4	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
EMR1	2015	genome.wustl.edu	37	19	6897159	6897159	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001974.3	+1	reviewed	e4-1	0.901	151	0%	65	40%	0	-	-	-	-	-
EMR1	2015	genome.wustl.edu	37	19	6924789	6924789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001974.3	+1	reviewed	p.R631Q	0.022	671	0%	123	46.3%	0	-	benign(0.149)	tolerated(1)	neutral(0.013)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR4P	326342	genome.wustl.edu	37	19	6974684	6974684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000359590	-1	known	p.E217D	0.000	94	0%	88	43.2%	0	-	-	-	-	NULL
ARHGEF18	23370	genome.wustl.edu	37	19	7506574	7506574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130955.1	+1	reviewed	p.A193V	0.000	72	0%	177	45.2%	10	40%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
PNPLA6	10908	genome.wustl.edu	37	19	7614876	7614876	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006702.4	+1	reviewed	p.F525	0.985	35	0%	26	57.7%	48	41.6%	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
CD209	30835	genome.wustl.edu	37	19	7806083	7806083	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026692.1	-1	reviewed	NULL	0.304	93	0%	66	39.4%	2	0%	-	-	-	-
CLEC4M	10332	genome.wustl.edu	37	19	7828084	7828084	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026707.1	+1	reviewed	NULL	0.000	43	0%	49	36.7%	0	-	-	-	-	-
EVI5L	115704	genome.wustl.edu	37	19	7918174	7918174	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145245.3	+1	validated	p.Y367	0.288	23	0%	34	52.9%	11	27.2%	-	-	-	NULL
ELAVL1	1994	genome.wustl.edu	37	19	8032675	8032675	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001419.2	-1	reviewed	e4-1	1.000	64	0%	123	43.9%	0	-	-	-	-	-
FBN3	84467	genome.wustl.edu	37	19	8188776	8188776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032447.3	-1	reviewed	p.E950K	0.932	20	0%	20	35%	8	12.5%	benign(0.245)	tolerated(0.11)	neutral(0.297)	HMMPfam_TB,superfamily_TB module/8-cys domain
PRAM1	84106	genome.wustl.edu	37	19	8555784	8555784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032152.3	-1	reviewed	p.R576Q	1.000	119	0%	104	48.1%	1	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_SH3-domain
MUC16	94025	genome.wustl.edu	37	19	8966719	8966719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.L14412M	0.033	130	0%	28	46.4%	2	50%	possibly_damaging(0.855)	tolerated(0.09)	deleterious(0.627)	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9046659	9046659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.T11658A	0.006	557	0%	109	12.8%	0	-	benign(0.099)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9049420	9049420	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.V10737	0.000	807	0%	110	54.5%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9050064	9050064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.M10523V	0.000	2474	0.1%	265	47.2%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9058601	9058601	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.V9615	0.000	254	0%	121	40.5%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9059979	9059979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.S9156Y	0.000	217	0%	86	47.7%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9060000	9060000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.S9149Y	0.000	211	0%	91	44%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9067903	9067903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.L6515M	0.000	458	0%	180	13.3%	1	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9069384	9069384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.S6021Y	0.003	337	0%	79	43%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9073926	9073926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.S4507*	0.002	407	0%	80	15%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9074535	9074535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.S4304F	0.001	508	0%	82	52.4%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9084506	9084506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.L2437I	0.084	212	0%	96	43.8%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9086933	9086933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.T1628A	0.000	906	0%	190	11.1%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9087579	9087579	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.S1412	0.004	516	0%	185	49.7%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9087801	9087801	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.V1338	0.001	829	0%	250	45.2%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9091043	9091043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024690.2	-1	validated	p.L258I	0.001	760	0%	211	13.7%	0	-	unknown(0)	-	-	NULL
OR1M1	125963	genome.wustl.edu	37	19	9204748	9204748	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004456.1	+1	provisional	p.V276	0.027	127	0%	46	17.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7G2	390882	genome.wustl.edu	37	19	9213929	9213929	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005193.1	-1	provisional	p.I18	0.000	118	0.8%	75	40%	0	-	-	-	-	NULL
OR7D4	125958	genome.wustl.edu	37	19	9325472	9325472	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005191.1	-1	provisional	p.L14	0.030	83	0%	28	39.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR7E24	26648	genome.wustl.edu	37	19	9362212	9362212	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079935.1	+1	provisional	p.L165	0.000	239	0.4%	210	43.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7E24	26648	genome.wustl.edu	37	19	9362472	9362472	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079935.1	+1	provisional	p.G251	0.055	86	0%	99	51.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9406753	9406753	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198535.1	-1	provisional	p.R443*	0.793	119	0%	104	11.5%	2	0%	-	-	-	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577542	9577542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152476.2	-1	validated	p.R694Q	0.000	97	0%	69	46.4%	0	-	probably_damaging(0.987)	tolerated(0.64)	neutral(0.440)	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577834	9577834	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152476.2	-1	validated	p.E597*	0.997	172	0%	111	19.8%	0	-	-	-	-	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577906	9577906	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152476.2	-1	validated	p.E573*	0.001	129	0%	81	45.7%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9579864	9579864	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152476.2	-1	validated	e7-1	0.015	41	0%	50	42%	0	-	-	-	-	-
ZNF121	7675	genome.wustl.edu	37	19	9677524	9677524	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008727.2	-1	validated	p.E89*	0.001	168	0%	124	46%	16	56.2%	-	-	-	superfamily_SSF57667
ZNF561	93134	genome.wustl.edu	37	19	9721559	9721559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152289.2	-1	validated	p.K260E	0.991	283	0%	213	39.4%	30	56.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_SSF57667
ZNF812	729648	genome.wustl.edu	37	19	9801205	9801205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001726949.2	-1	model	p.R252Q	0.010	417	0.5%	194	42.8%	7	14.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF812	729648	genome.wustl.edu	37	19	9801912	9801912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001726949.2	-1	model	p.E16D	0.000	117	0%	116	42.2%	1	0%	benign(0.032)	deleterious(0.04)	neutral(0.350)	NULL
TYK2	7297	genome.wustl.edu	37	19	10468806	10468806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003331.4	-1	reviewed	p.K728N	1.000	15	0%	16	62.5%	40	47.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PDE4A	5141	genome.wustl.edu	37	19	10570022	10570022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380686	+1	known	p.L16I	0.000	115	0%	45	46.7%	0	-	possibly_damaging(0.767)	tolerated(0.16)	neutral(0.344)	NULL
KRI1	65095	genome.wustl.edu	37	19	10670295	10670295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023008.3	-1	validated	p.K345N	1.000	141	0%	166	42.2%	18	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC44A2	57153	genome.wustl.edu	37	19	10742050	10742050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020428.3	+1	validated	p.K144E	0.174	76	0%	107	40.2%	76	39.4%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
CARM1	10498	genome.wustl.edu	37	19	11015752	11015752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199141.1	+1	validated	p.D116N	0.998	101	0%	78	52.6%	51	43.1%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
TMEM205	374882	genome.wustl.edu	37	19	11456076	11456076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145416.1	-1	validated	p.R39Q	0.037	36	0%	32	40.6%	319	43.8%	probably_damaging(0.994)	tolerated(0.05)	deleterious(0.797)	NULL
ZNF627	199692	genome.wustl.edu	37	19	11727865	11727865	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145295.3	+1	validated	p.R183*	0.011	37	0%	185	53.5%	33	60.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF627	199692	genome.wustl.edu	37	19	11728369	11728369	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145295.3	+1	validated	p.R351*	0.044	37	0%	114	45.6%	42	30.9%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF823	55552	genome.wustl.edu	37	19	11832704	11832704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080493.2	-1	validated	p.H549N	1.000	139	0%	201	38.8%	12	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF441	126068	genome.wustl.edu	37	19	11891134	11891134	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152355.2	+1	validated	p.G165	0.323	139	0%	156	47.4%	4	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF441	126068	genome.wustl.edu	37	19	11891619	11891619	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152355.2	+1	validated	p.K327T	0.617	145	0%	163	47.2%	0	-	benign(0.025)	deleterious(0.04)	neutral(0.350)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF433	163059	genome.wustl.edu	37	19	12126467	12126467	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080411.1	-1	provisional	p.S405	0.000	141	0%	145	46.9%	6	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155741	12155741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080404.1	-1	inferred	p.R206C	0.000	240	0%	317	48.6%	3	33.3%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12157233	12157233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080404.1	-1	inferred	p.W94C	0.001	275	0%	545	49.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF20	7568	genome.wustl.edu	37	19	12243573	12243573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021143.2	-1	validated	p.E476D	1.000	241	0.4%	175	54.9%	17	70.5%	benign(0.103)	deleterious(0.01)	neutral(0.414)	superfamily_C2H2 and C2HC zinc fingers
ZNF136	7695	genome.wustl.edu	37	19	12298667	12298667	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003437.2	+1	validated	p.R492*	0.000	145	0%	81	38.3%	16	56.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287841	100287841	genome.wustl.edu	37	19	12358451	12358451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343641.1	-1	model	p.E422*	0.002	23	0%	33	48.5%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF44	51710	genome.wustl.edu	37	19	12384252	12384252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016264.3	-1	validated	p.R273I	0.280	137	0%	216	46.3%	5	40%	benign(0.367)	deleterious(0.05)	neutral(0.462)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12429419	12429419	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145276.2	-1	validated	p.E474*	1.000	119	0%	134	29.9%	7	42.8%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12429955	12429955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145276.2	-1	validated	p.S295Y	0.000	245	0%	243	34.6%	7	57.1%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF442	79973	genome.wustl.edu	37	19	12461293	12461293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030824.2	-1	validated	p.R369I	0.940	371	0%	258	48.4%	4	25%	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF799	90576	genome.wustl.edu	37	19	12501863	12501863	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080821.1	-1	validated	p.K450T	0.010	240	0%	168	46.4%	4	75%	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF443	10224	genome.wustl.edu	37	19	12543924	12543924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005815.4	-1	validated	p.D31Y	0.949	581	0%	254	23.6%	1	100%	benign(0.413)	deleterious(0)	deleterious(0.578)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF709	163051	genome.wustl.edu	37	19	12575849	12575849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152601.3	-1	validated	p.R296Q	0.000	32	0%	113	51.3%	4	50%	possibly_damaging(0.601)	tolerated(1)	neutral(0.208)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575921	12575921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152601.3	-1	validated	p.R272M	0.237	36	0%	95	48.4%	1	100%	benign(0.405)	tolerated(0.05)	deleterious(0.476)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576173	12576173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152601.3	-1	validated	p.R188I	0.254	86	0%	156	52.6%	1	0%	probably_damaging(0.966)	tolerated(0.09)	deleterious(0.704)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576269	12576269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152601.3	-1	validated	p.R156Q	0.000	111	0.9%	189	43.9%	7	57.1%	benign(0.289)	tolerated(1)	neutral(0.089)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12637432	12637432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144976.3	-1	validated	p.R497I	0.977	254	0%	299	48.8%	11	36.3%	benign(0.346)	deleterious(0.03)	deleterious(0.474)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12637864	12637864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144976.3	-1	validated	p.R353Q	0.000	89	0%	140	12.1%	12	25%	possibly_damaging(0.939)	tolerated(1)	neutral(0.385)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12637948	12637948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144976.3	-1	validated	p.R325Q	0.037	104	0%	144	50.7%	5	60%	possibly_damaging(0.528)	tolerated(0.86)	neutral(0.178)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12638494	12638494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144976.3	-1	validated	p.C143F	0.466	214	0%	182	45.6%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF791	163049	genome.wustl.edu	37	19	12739050	12739050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153358.2	+1	validated	p.R236I	0.948	71	0%	120	52.5%	4	25%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
BEST2	54831	genome.wustl.edu	37	19	12866435	12866435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017682.2	+1	reviewed	p.T241A	1.000	244	0%	102	45.1%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Bestrophin
GCDH	2639	genome.wustl.edu	37	19	13010519	13010519	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013976.2	+1	reviewed	p.Q417*	0.001	187	0%	150	48%	30	30%	-	-	-	NULL
CALR	811	genome.wustl.edu	37	19	13050041	13050041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004343.3	+1	reviewed	p.K62R	0.998	35	0%	64	50%	881	47.7%	benign(0.036)	tolerated(0.27)	neutral(0.036)	HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases
TRMT1	55621	genome.wustl.edu	37	19	13218585	13218585	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136035.2	-1	validated	p.W496G	1.000	45	0%	105	48.6%	40	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TRM
CACNA1A	773	genome.wustl.edu	37	19	13346454	13346454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127222.1	-1	reviewed	p.L1681I	1.000	163	0%	96	52.1%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1A	773	genome.wustl.edu	37	19	13387925	13387925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127222.1	-1	reviewed	p.D1280E	1.000	229	0%	192	50%	0	-	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CC2D1A	54862	genome.wustl.edu	37	19	14037873	14037873	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017721.4	+1	reviewed	p.F736	0.971	60	0%	86	39.5%	44	40.9%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PRKACA	5566	genome.wustl.edu	37	19	14213637	14213637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002730.3	-1	reviewed	p.F109L	0.997	97	0%	148	50.7%	85	43.5%	benign(0.003)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EMR3	84658	genome.wustl.edu	37	19	14749003	14749003	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032571.3	-1	reviewed	p.I466	0.957	224	0%	50	44%	1	0%	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR3	84658	genome.wustl.edu	37	19	14765801	14765801	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032571.3	-1	reviewed	p.D190	0.000	165	0.6%	276	47.5%	0	-	-	-	-	NULL
ZNF333	84449	genome.wustl.edu	37	19	14829464	14829464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032433.2	+1	validated	p.R442I	0.970	263	0%	69	43.5%	9	44.4%	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR7A17	26333	genome.wustl.edu	37	19	14991445	14991445	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030901.1	-1	provisional	p.C241	0.298	147	0%	95	13.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR7A17	26333	genome.wustl.edu	37	19	14991924	14991924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030901.1	-1	provisional	p.L82F	0.945	323	0%	107	25.2%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_7tm_1,superfamily_SSF81321
OR7A17	26333	genome.wustl.edu	37	19	14992074	14992074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030901.1	-1	provisional	p.L32M	0.110	99	0%	48	43.8%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_SSF81321
OR7C2	26658	genome.wustl.edu	37	19	15052847	15052847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012377.1	+1	provisional	p.E183K	0.000	655	0%	412	41.7%	0	-	benign(0.022)	tolerated(0.1)	neutral(0.287)	HMMPfam_7tm_1,superfamily_SSF81321
OR7C2	26658	genome.wustl.edu	37	19	15053032	15053032	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012377.1	+1	provisional	p.L244	0.004	532	0%	299	47.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CASP14	23581	genome.wustl.edu	37	19	15164422	15164422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012114.1	+1	reviewed	p.K53Q	0.958	189	0%	23	34.8%	0	-	possibly_damaging(0.844)	tolerated(0.35)	neutral(0.344)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CYP4F22	126410	genome.wustl.edu	37	19	15636255	15636255	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173483.3	+1	reviewed	p.F36	0.970	430	0%	64	45.3%	0	-	-	-	-	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15648771	15648771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173483.3	+1	reviewed	p.K213R	1.000	232	0%	63	36.5%	0	-	possibly_damaging(0.839)	deleterious(0.03)	deleterious(0.685)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F8	11283	genome.wustl.edu	37	19	15739598	15739598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000441682	+1	known	p.E447K	0.794	82	0%	53	49.1%	0	-	benign(0.016)	deleterious(0.03)	neutral(0.365)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F8	11283	genome.wustl.edu	37	19	15740054	15740054	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007253.3	+1	reviewed	p.R483H	0.964	123	0%	40	35%	0	-	-	-	-	NULL
CYP4F3	4051	genome.wustl.edu	37	19	15756539	15756539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000896.2	+1	reviewed	p.S70L	0.101	182	0%	66	40.9%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F3	4051	genome.wustl.edu	37	19	15758104	15758104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000896.2	+1	reviewed	p.K165N	0.106	242	0%	152	45.4%	0	-	possibly_damaging(0.472)	tolerated(0.09)	neutral(0.453)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F12	66002	genome.wustl.edu	37	19	15794505	15794505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023944.2	+1	reviewed	p.D284Y	0.618	229	0%	115	37.4%	0	-	possibly_damaging(0.609)	deleterious(0.03)	deleterious(0.576)	HMMPfam_p450,superfamily_Cytochrome P450
OR10H2	26538	genome.wustl.edu	37	19	15839801	15839801	+	Nonstop_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013939.2	+1	validated	p.*316C	0.093	272	0%	67	40.3%	0	-	-	-	-	NULL
LOC388514	388514	genome.wustl.edu	37	19	15872059	15872059	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_017598.3	-1	model	NULL	1.000	141	0%	45	35.6%	0	-	-	-	-	-
CYP4F11	57834	genome.wustl.edu	37	19	16033201	16033201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128932.1	-1	reviewed	p.A320S	0.997	658	0%	210	41.9%	0	-	probably_damaging(0.967)	tolerated(0.12)	deleterious(0.669)	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F11	57834	genome.wustl.edu	37	19	16045048	16045048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128932.1	-1	reviewed	p.Q57H	0.186	201	0%	45	55.6%	0	-	benign(0.394)	tolerated(0.14)	neutral(0.376)	HMMPfam_p450,superfamily_Cytochrome P450
CIB3	117286	genome.wustl.edu	37	19	16275561	16275561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_054113.2	-1	reviewed	p.Q170H	1.000	250	0%	82	41.5%	0	-	possibly_damaging(0.777)	deleterious(0)	deleterious(0.734)	superfamily_EF-hand
EPS15L1	58513	genome.wustl.edu	37	19	16506157	16506157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021235.1	-1	provisional	p.K638R	1.000	219	0%	223	42.2%	26	30.7%	possibly_damaging(0.952)	tolerated(0.13)	deleterious(0.648)	NULL
C19orf44	84167	genome.wustl.edu	37	19	16617571	16617571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032207.2	+1	validated	p.D379N	0.002	37	0%	119	44.5%	1	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
CHERP	10523	genome.wustl.edu	37	19	16652741	16652741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006387.5	-1	validated	p.L47I	1.000	51	0%	180	46.1%	27	33.3%	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	HMMPfam_Surp,HMMSmart_SM00648,superfamily_Surp module (SWAP domain Pfam 01805)
NWD1	284434	genome.wustl.edu	37	19	16899872	16899872	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007525.2	+1	validated	p.W802*	0.932	124	0.8%	119	44.5%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NWD1	284434	genome.wustl.edu	37	19	16908673	16908673	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001007525.2	+1	validated	p.T1010	0.024	146	0%	79	48.1%	1	100%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HAUS8	93323	genome.wustl.edu	37	19	17163732	17163732	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033417.1	-1	validated	p.E278*	0.003	233	0%	124	46.8%	18	11.1%	-	-	-	NULL
MYO9B	4650	genome.wustl.edu	37	19	17313982	17313982	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004145.3	+1	reviewed	p.F1635	0.748	47	0%	12	50%	85	40%	-	-	-	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
PLVAP	83483	genome.wustl.edu	37	19	17476486	17476486	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031310.1	-1	provisional	p.S263*	0.004	8	0.000	33	0.697	50	0%	-	-	-	HMMPfam_PV-1
PGLS	25796	genome.wustl.edu	37	19	17627005	17627005	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012088.2	+1	validated	p.P104	0.968	84	0%	48	47.9%	61	34.4%	-	-	-	HMMPfam_Glucosamine_iso,superfamily_SSF100950
PDE4C	5143	genome.wustl.edu	37	19	18321914	18321914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000923.3	-1	validated	p.R655I	1.000	193	0%	78	39.7%	0	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	superfamily_HD-domain/PDEase-like
SUGP2	10147	genome.wustl.edu	37	19	19135956	19135956	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017392.3	-1	reviewed	p.E401*	1.000	7	0.000	30	0.367	11	9%	-	-	-	NULL
RFXANK	8625	genome.wustl.edu	37	19	19309986	19309986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003721.2	+1	reviewed	p.E219K	0.998	17	0%	23	30.4%	300	46%	possibly_damaging(0.93)	tolerated(0.51)	neutral(0.386)	HMMPfam_Ank,superfamily_Ankyrin repeat
NCAN	1463	genome.wustl.edu	37	19	19334956	19334956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004386.2	+1	validated	p.D201G	0.999	111	0%	45	46.7%	0	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,superfamily_C-type_lectin_fold
NCAN	1463	genome.wustl.edu	37	19	19335211	19335211	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004386.2	+1	validated	p.Y249	0.996	91	0%	47	31.9%	0	-	-	-	-	HMMPfam_Xlink,HMMSmart_LINK,superfamily_C-type_lectin_fold
GMIP	51291	genome.wustl.edu	37	19	19745644	19745644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016573.2	-1	reviewed	p.S615L	0.930	10	0%	21	47.6%	34	32.3%	benign(0.39)	deleterious(0.05)	deleterious(0.470)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ATP13A1	57130	genome.wustl.edu	37	19	19756768	19756768	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020410.2	-1	validated	p.K1092T	1.000	58	0%	79	41.8%	122	52.4%	benign(0.003)	tolerated(0.3)	neutral(0.029)	NULL
ZNF14	7561	genome.wustl.edu	37	19	19822451	19822451	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021030.2	-1	reviewed	p.R547	0.001	141	0%	81	38.3%	9	44.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF253	56242	genome.wustl.edu	37	19	20002480	20002480	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021047.2	+1	provisional	p.E142*	0.021	110	0%	114	45.6%	17	82.3%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF253	56242	genome.wustl.edu	37	19	20003303	20003303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021047.2	+1	provisional	p.R416I	0.007	78	0%	70	42.9%	24	16.6%	benign(0.028)	tolerated(0.26)	neutral(0.036)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF253	56242	genome.wustl.edu	37	19	20003387	20003387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021047.2	+1	provisional	p.R444I	1.000	86	0%	68	39.7%	30	63.3%	benign(0.005)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF93	81931	genome.wustl.edu	37	19	20044256	20044256	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031218.3	+1	validated	p.N164	0.878	163	0%	145	41.4%	12	58.3%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF93	81931	genome.wustl.edu	37	19	20044426	20044426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031218.3	+1	validated	p.R221I	0.536	95	0%	59	32.2%	16	37.5%	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF682	91120	genome.wustl.edu	37	19	20117632	20117632	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033196.2	-1	validated	p.K227Q	1.000	98	0%	132	42.4%	7	42.8%	benign(0.003)	deleterious(0)	neutral(0.445)	superfamily_C2H2 and C2HC zinc fingers
ZNF90	7643	genome.wustl.edu	37	19	20229106	20229106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007138.1	+1	validated	p.K248T	0.243	196	0%	108	36.1%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000213985	0	genome.wustl.edu	37	19	20369563	20369563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000397155	+1	known	p.S175Y	1.000	174	0%	229	41.5%	8	0%	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
ZNF737	100129842	genome.wustl.edu	37	19	20728011	20728011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343624.1	-1	model	p.R333I	0.977	32	0%	28	50%	20	45%	benign(0.01)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF737	100129842	genome.wustl.edu	37	19	20736611	20736611	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343624.1	-1	model	p.E12*	0.664	150	0%	141	39%	5	60%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF66P	7617	genome.wustl.edu	37	19	20975348	20975348	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000425625	+1	known	p.E58*	0.096	179	0%	177	26.6%	2	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF66P	7617	genome.wustl.edu	37	19	20988635	20988635	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000425625	+1	known	p.L123V	0.000	69	0%	88	34.1%	0	-	-	-	-	NULL
ZNF66P	7617	genome.wustl.edu	37	19	20989404	20989404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000425625	+1	known	p.R379I	0.928	68	0%	29	27.6%	5	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF430	80264	genome.wustl.edu	37	19	21205621	21205621	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025189.3	+1	validated	p.P10	0.002	113	0%	154	44.2%	3	0%	-	-	-	NULL
ZNF431	170959	genome.wustl.edu	37	19	21365861	21365861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133473.2	+1	validated	p.R252I	1.000	65	0%	66	37.9%	7	57.1%	benign(0.075)	tolerated(0.15)	neutral(0.246)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF431	170959	genome.wustl.edu	37	19	21366633	21366633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133473.2	+1	validated	p.E509D	1.000	101	0%	84	51.2%	6	0%	benign(0.003)	deleterious(0.02)	neutral(0.383)	superfamily_C2H2 and C2HC zinc fingers
ZNF493	284443	genome.wustl.edu	37	19	21606166	21606166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076678.2	+1	validated	p.E235D	1.000	61	0%	39	51.3%	2	50%	benign(0.167)	tolerated(0.07)	neutral(0.334)	superfamily_C2H2 and C2HC zinc fingers
ZNF493	284443	genome.wustl.edu	37	19	21606735	21606735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001076678.2	+1	validated	p.R425I	0.443	34	0%	16	31.2%	2	0%	possibly_damaging(0.634)	tolerated(0.16)	neutral(0.281)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF429	353088	genome.wustl.edu	37	19	21719517	21719517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001415.2	+1	provisional	p.R221I	0.799	64	0%	125	44.8%	9	33.3%	benign(0.009)	tolerated(0.14)	neutral(0.250)	NULL
ZNF429	353088	genome.wustl.edu	37	19	21720024	21720024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001415.2	+1	provisional	p.I390T	0.788	40	0%	86	46.5%	2	0%	benign(0.26)	tolerated(0.15)	neutral(0.268)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22154671	22154671	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007153.3	-1	provisional	p.K927	0.890	221	0%	40	40%	0	-	-	-	-	superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22156534	22156534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007153.3	-1	provisional	p.F434L	0.004	198	0%	48	35.4%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157104	22157104	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007153.3	-1	provisional	p.L244	0.001	43	0%	28	39.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157354	22157354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007153.3	-1	provisional	p.N161S	0.000	392	0%	149	49%	0	-	benign(0.142)	tolerated(0.81)	neutral(0.013)	NULL
ZNF257	113835	genome.wustl.edu	37	19	22271205	22271205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033468.2	+1	provisional	p.R218Q	0.000	54	0%	65	44.6%	0	-	benign(0.049)	tolerated(1)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF257	113835	genome.wustl.edu	37	19	22271727	22271727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033468.2	+1	provisional	p.R392I	1.000	78	0%	71	57.7%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF676	163223	genome.wustl.edu	37	19	22363448	22363448	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001411.2	-1	provisional	p.I357M	0.255	101	0%	45	51.1%	0	-	benign(0.007)	tolerated(0.07)	neutral(0.319)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287226	100287226	genome.wustl.edu	37	19	22496674	22496674	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343636.1	+1	model	p.K19T	0.006	117	0%	90	45.6%	0	-	possibly_damaging(0.763)	deleterious(0.04)	deleterious(0.632)	superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497054	22497054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343636.1	+1	model	p.L146I	0.001	21	0%	23	47.8%	0	-	benign(0.047)	deleterious(0.04)	neutral(0.352)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497071	22497071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343636.1	+1	model	p.R151S	0.620	20	0%	20	40%	0	-	benign(0.105)	tolerated(0.19)	neutral(0.058)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497338	22497338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343636.1	+1	model	p.E240D	0.994	38	0%	24	33.3%	0	-	benign(0.078)	deleterious(0.03)	neutral(0.370)	superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497609	22497609	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343636.1	+1	model	p.E331*	0.011	67	0%	21	47.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497814	22497814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343636.1	+1	model	p.R399I	0.001	35	0%	22	40.9%	0	-	possibly_damaging(0.678)	tolerated(0.52)	neutral(0.250)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF99	7652	genome.wustl.edu	37	19	22939861	22939861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080409.1	-1	provisional	p.H824N	0.969	203	0%	134	44%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC646864	646864	genome.wustl.edu	37	19	23040194	23040194	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001726885.1	+1	model	p.H196	1.000	52	0%	87	28.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040212	23040212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001726885.1	+1	model	p.F202L	0.174	58	0%	82	32.9%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040527	23040527	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001726885.1	+1	model	p.I307	1.000	12	0%	27	48.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23159860	23159860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001726961.1	-1	model	p.D93E	0.000	124	0%	62	22.6%	0	-	-	-	-	NULL
ZNF730	100129543	genome.wustl.edu	37	19	23328807	23328807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001719792.2	+1	model	p.F363L	0.820	27	0%	44	47.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF730	100129543	genome.wustl.edu	37	19	23329342	23329342	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000327867	+1	known	p.K499T	0.998	10	0%	28	50%	0	-	probably_damaging(0.966)	tolerated(0.1)	deleterious(0.694)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF724P	440519	genome.wustl.edu	37	19	23405267	23405267	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000418100	-1	known	p.E594*	0.495	13	0%	16	37.5%	6	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23544756	23544756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003430.2	-1	validated	p.R342I	0.021	97	0%	122	44.3%	8	50%	benign(0.048)	tolerated(0.17)	neutral(0.062)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23544926	23544926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003430.2	-1	validated	p.K285N	0.996	166	0%	167	49.1%	14	78.5%	probably_damaging(0.997)	tolerated(0.32)	deleterious(0.490)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23545372	23545372	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003430.2	-1	validated	p.E137*	0.005	95	0%	202	38.6%	10	80%	-	-	-	NULL
ZNF681	148213	genome.wustl.edu	37	19	23926439	23926439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138286.2	-1	validated	p.R638I	0.002	132	0.8%	232	38.4%	6	50%	benign(0.01)	tolerated(0.09)	neutral(0.297)	superfamily_C2H2 and C2HC zinc fingers
ZNF681	148213	genome.wustl.edu	37	19	23938318	23938318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138286.2	-1	validated	p.F13L	0.716	165	0%	191	44.5%	0	-	possibly_damaging(0.575)	deleterious(0.02)	deleterious(0.580)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ENSG00000104777	0	genome.wustl.edu	37	19	24102685	24102685	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000300996	-1	known	NULL	0.001	9	0.000	50	0.460	0	-	-	-	-	-
ZNF726	730087	genome.wustl.edu	37	19	24116707	24116707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000322487	+1	known	p.E597K	0.000	37	0%	39	35.9%	0	-	benign(0.148)	tolerated(0.22)	neutral(0.055)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24309105	24309105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203282.2	+1	validated	p.E101D	0.001	128	0%	93	10.8%	35	17.1%	benign(0.253)	tolerated(0.14)	neutral(0.276)	NULL
ZNF254	9534	genome.wustl.edu	37	19	24309295	24309295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203282.2	+1	validated	p.K165Q	0.019	71	0%	86	39.5%	18	55.5%	probably_damaging(0.976)	tolerated(0.18)	deleterious(0.474)	superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24309339	24309339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203282.2	+1	validated	p.K179N	1.000	52	0%	71	40.8%	8	12.5%	benign(0.175)	tolerated(0.17)	neutral(0.075)	superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24309961	24309961	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203282.2	+1	validated	p.F387V	0.992	118	0%	51	51%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310431	24310431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203282.2	+1	validated	p.E543D	0.639	45	2.2%	28	42.9%	19	78.9%	benign(0.156)	deleterious(0)	neutral(0.459)	superfamily_C2H2 and C2HC zinc fingers
C19orf12	83636	genome.wustl.edu	37	19	30193777	30193777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031726.2	-1	validated	p.N101D	0.270	43	0%	25	20%	22	27.2%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
URI1	8725	genome.wustl.edu	37	19	30498440	30498440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003796.2	+1	reviewed	p.D194G	0.996	159	0%	63	39.7%	49	30.6%	benign(0.277)	deleterious(0.01)	neutral(0.435)	NULL
ZNF536	9745	genome.wustl.edu	37	19	30936283	30936283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014717.1	+1	provisional	p.R605Q	1.000	64	0%	55	50.9%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
ZNF536	9745	genome.wustl.edu	37	19	31038893	31038893	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014717.1	+1	provisional	p.T789	0.999	25	0%	26	38.5%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ANKRD27	84079	genome.wustl.edu	37	19	33113485	33113485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032139.2	-1	validated	p.R557I	0.996	144	0%	61	45.9%	17	47%	benign(0.141)	deleterious(0.02)	neutral(0.395)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TDRD12	91646	genome.wustl.edu	37	19	33222645	33222645	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001110822.1	+1	validated	p.G13	0.957	63	0%	131	45%	0	-	-	-	-	HMMPfam_TUDOR
TDRD12	91646	genome.wustl.edu	37	19	33263735	33263735	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001110822.1	+1	validated	p.I314	0.988	60	0%	102	38.2%	0	-	-	-	-	NULL
SLC7A9	11136	genome.wustl.edu	37	19	33353095	33353095	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001126335.1	-1	reviewed	p.F211	0.997	94	0%	65	40%	0	-	-	-	-	HMMPfam_AA_permease
SLC7A9	11136	genome.wustl.edu	37	19	33353113	33353113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001126335.1	-1	reviewed	p.K205N	0.924	94	0%	59	42.4%	0	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_AA_permease
CEP89	84902	genome.wustl.edu	37	19	33406284	33406284	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032816.3	-1	validated	p.I508	0.045	300	0%	147	40.1%	11	45.4%	-	-	-	NULL
RHPN2	85415	genome.wustl.edu	37	19	33471065	33471065	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033103.4	-1	reviewed	p.K633T	1.000	277	0%	103	41.7%	43	51.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPATCH1	55094	genome.wustl.edu	37	19	33617516	33617516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018025.2	+1	provisional	p.K881T	1.000	39	0%	117	42.7%	18	50%	unknown(0)	deleterious(0.05)	-	NULL
CEBPG	1054	genome.wustl.edu	37	19	33870160	33870160	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001806.2	+1	reviewed	p.S5	0.030	18	0%	24	45.8%	68	47%	-	-	-	NULL
RPS4XP21	126235	genome.wustl.edu	37	19	34583512	34583512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000469064	-1	known	p.G246V	1.000	18	0%	11	36.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
UBA2	10054	genome.wustl.edu	37	19	34945254	34945254	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005499.2	+1	validated	p.I376	0.999	173	1.2%	185	43.2%	51	49%	-	-	-	HMMPfam_UBACT,superfamily_MoeB
SCGB2B2	284402	genome.wustl.edu	37	19	35085245	35085245	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001025591.2	-1	validated	p.I27	0.127	146	0%	53	43.4%	0	-	-	-	-	superfamily_Secretoglobin
ZNF792	126375	genome.wustl.edu	37	19	35449705	35449705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175872.4	-1	validated	p.N352D	0.000	156	0%	95	44.2%	0	-	benign(0.392)	tolerated(0.29)	neutral(0.154)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35451811	35451811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_175872.4	-1	validated	p.D41N	0.096	580	0%	169	39.1%	1	100%	possibly_damaging(0.896)	tolerated(0.09)	deleterious(0.650)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
CD22	933	genome.wustl.edu	37	19	35832001	35832001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001771.3	+1	validated	p.S489R	0.000	156	0%	50	50%	0	-	benign(0.236)	tolerated(0.78)	neutral(0.025)	HMMSmart_SM00409,superfamily_Immunoglobulin
FFAR3	2865	genome.wustl.edu	37	19	35850257	35850257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005304.3	+1	validated	p.F155L	0.000	146	0%	104	9.6%	0	-	benign(0.055)	tolerated(0.34)	neutral(0.026)	HMMPfam_7tm_1,superfamily_SSF81321
DMKN	93099	genome.wustl.edu	37	19	36004014	36004014	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033317.3	-1	reviewed	p.R122*	0.000	141	0%	62	45.2%	0	-	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36220137	36220137	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014727.1	+1	reviewed	p.F1619	0.996	59	0%	55	40%	30	30%	-	-	-	NULL
NPHS1	4868	genome.wustl.edu	37	19	36322392	36322392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004646.3	-1	reviewed	p.E1099D	0.991	55	0%	62	19.4%	0	-	possibly_damaging(0.797)	tolerated(0.53)	neutral(0.307)	NULL
NPHS1	4868	genome.wustl.edu	37	19	36338979	36338979	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004646.3	-1	reviewed	p.I468	0.960	22	0%	17	58.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
APLP1	333	genome.wustl.edu	37	19	36362859	36362859	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024807.1	+1	reviewed	p.F257	0.942	57	0%	39	46.2%	14	57.1%	-	-	-	NULL
LRFN3	79414	genome.wustl.edu	37	19	36431718	36431718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024509.1	+1	provisional	p.S464L	0.999	17	0%	12	58.3%	14	50%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ZNF146	7705	genome.wustl.edu	37	19	36727609	36727609	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099638.1	+1	validated	p.T89	0.037	59	0%	113	46%	54	48.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP82	284406	genome.wustl.edu	37	19	36884085	36884085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133466.2	-1	provisional	p.R386I	1.000	203	0%	140	49.3%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC644189	644189	genome.wustl.edu	37	19	36913166	36913166	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_016949.3	+1	model	NULL	0.974	53	0%	69	50.7%	0	-	-	-	-	-
LOC644189	644189	genome.wustl.edu	37	19	36913316	36913316	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XR_016949.3	+1	model	NULL	0.669	34	0%	56	35.7%	0	-	-	-	-	-
ZNF529	57711	genome.wustl.edu	37	19	37037900	37037900	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145649.1	-1	validated	p.S520	0.052	197	0%	88	37.5%	4	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF382	84911	genome.wustl.edu	37	19	37117841	37117841	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032825.3	+1	validated	p.E348*	1.000	71	0%	44	43.2%	7	42.8%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF461	92283	genome.wustl.edu	37	19	37130680	37130680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153257.2	-1	validated	p.E189D	0.828	173	0%	223	46.2%	4	75%	benign(0.028)	tolerated(0.05)	neutral(0.347)	superfamily_C2H2 and C2HC zinc fingers
ZNF790	388536	genome.wustl.edu	37	19	37310084	37310084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206894.2	-1	validated	p.H388N	0.998	67	0%	65	49.2%	4	50%	benign(0.026)	deleterious(0)	neutral(0.446)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF790	388536	genome.wustl.edu	37	19	37310257	37310257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_206894.2	-1	validated	p.R330I	1.000	74	0%	67	32.8%	7	57.1%	possibly_damaging(0.441)	tolerated(0.05)	deleterious(0.489)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF345	25850	genome.wustl.edu	37	19	37368985	37368985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003419.3	+1	provisional	p.R418I	1.000	171	0%	99	47.5%	4	25%	benign(0.1)	tolerated(0.07)	neutral(0.327)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF568	374900	genome.wustl.edu	37	19	37440531	37440531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198539.2	+1	validated	p.A159V	0.003	51	0%	79	41.8%	8	37.5%	possibly_damaging(0.667)	tolerated(0.47)	neutral(0.247)	NULL
ZNF420	147923	genome.wustl.edu	37	19	37618127	37618127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144689.3	+1	provisional	p.N78K	0.000	87	0%	55	38.2%	11	45.4%	benign(0.35)	tolerated(1)	neutral(0.111)	NULL
ZNF420	147923	genome.wustl.edu	37	19	37618194	37618194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144689.3	+1	provisional	p.E101*	0.001	120	0%	71	50.7%	11	45.4%	-	-	-	NULL
ZNF585A	199704	genome.wustl.edu	37	19	37643141	37643141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152655.2	-1	validated	p.E499K	0.001	371	0.3%	174	37.9%	2	0%	benign(0.413)	deleterious(0.02)	deleterious(0.516)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585A	199704	genome.wustl.edu	37	19	37643680	37643680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152655.2	-1	validated	p.R319I	1.000	468	0.2%	153	46.4%	2	50%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585B	92285	genome.wustl.edu	37	19	37676394	37676394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152279.3	-1	validated	p.R682I	0.997	509	0%	182	41.8%	6	16.6%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677318	37677318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152279.3	-1	validated	p.R374I	1.000	401	0%	206	42.2%	2	50%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF527	84503	genome.wustl.edu	37	19	37880084	37880084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032453.1	+1	validated	p.R378I	1.000	164	0%	95	46.3%	4	50%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF569	148266	genome.wustl.edu	37	19	37904775	37904775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152484.2	-1	validated	p.R262I	0.998	85	0%	115	50.4%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF570	148268	genome.wustl.edu	37	19	37967299	37967299	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144694.1	+1	provisional	p.W73*	0.997	336	0%	105	14.3%	6	16.6%	-	-	-	HMMSmart_SM00349
ZNF570	148268	genome.wustl.edu	37	19	37975130	37975130	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144694.1	+1	provisional	p.N202	0.000	31	0%	59	32.2%	4	25%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF571	51276	genome.wustl.edu	37	19	38056155	38056155	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016536.3	-1	validated	p.K392T	0.000	106	0%	27	48.1%	2	0%	benign(0.022)	tolerated(0.18)	neutral(0.057)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP30	22835	genome.wustl.edu	37	19	38126369	38126369	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014898.2	-1	validated	p.E358A	0.968	120	0%	96	39.6%	15	46.6%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP30	22835	genome.wustl.edu	37	19	38126622	38126622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014898.2	-1	validated	p.E274*	0.630	193	0%	121	41.3%	8	37.5%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF607	84775	genome.wustl.edu	37	19	38189206	38189206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032689.4	-1	validated	p.R609I	1.000	129	0%	134	41.8%	3	0%	benign(0.38)	deleterious(0.03)	deleterious(0.486)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38190650	38190650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032689.4	-1	validated	p.E128*	0.006	197	0%	180	45.6%	8	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38379193	38379193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031951.3	-1	provisional	p.K1667N	0.000	341	0%	344	38.4%	0	-	possibly_damaging(0.952)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38380768	38380768	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031951.3	-1	provisional	p.S1142	0.001	146	0%	184	42.9%	0	-	-	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38384315	38384315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031951.3	-1	provisional	p.K637N	0.944	45	0%	42	38.1%	0	-	benign(0.195)	-	-	superfamily_WD40 repeat-like
WDR87	83889	genome.wustl.edu	37	19	38386928	38386928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031951.3	-1	provisional	p.K32N	0.779	139	0%	98	52%	0	-	probably_damaging(0.978)	-	-	NULL
SPINT2	10653	genome.wustl.edu	37	19	38779825	38779825	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021102.3	+1	reviewed	p.Y129D	1.000	80	0%	54	13%	749	14.4%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_BPTI-like
FAM98C	147965	genome.wustl.edu	37	19	38896160	38896160	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174905.3	+1	validated	p.E212A	0.997	102	0%	61	44.3%	27	51.8%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_DUF2465
RYR1	6261	genome.wustl.edu	37	19	38954147	38954147	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000540.2	+1	reviewed	p.Q888*	1.000	48	0%	21	33.3%	0	-	-	-	-	HMMPfam_RyR
RYR1	6261	genome.wustl.edu	37	19	38979852	38979852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000540.2	+1	reviewed	p.Q1861H	0.997	112	0%	104	42.3%	0	-	benign(0.009)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38991483	38991483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000540.2	+1	reviewed	p.K2489N	0.834	61	0%	19	21.1%	0	-	possibly_damaging(0.773)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39005682	39005682	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000540.2	+1	reviewed	p.V3163	0.990	65	0%	46	23.9%	0	-	-	-	-	NULL
LGALS4	3960	genome.wustl.edu	37	19	39297212	39297212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006149.3	-1	reviewed	p.F121L	1.000	88	0%	59	50.8%	0	-	possibly_damaging(0.897)	deleterious(0.05)	deleterious(0.700)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
PAK4	10298	genome.wustl.edu	37	19	39665964	39665964	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014831.2	+1	reviewed	p.E415	1.000	9	0.000	9	0.667	130	43%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NCCRP1	342897	genome.wustl.edu	37	19	39691087	39691087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001414.1	+1	provisional	p.R217Q	0.721	19	0%	10	60%	2	0%	probably_damaging(0.988)	tolerated(0.58)	neutral(0.443)	HMMPfam_FBA,superfamily_Gal_bind_like
LGALS14	56891	genome.wustl.edu	37	19	40199911	40199911	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203471.1	+1	reviewed	p.V155	0.004	266	0%	36	44.4%	0	-	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
FBL	2091	genome.wustl.edu	37	19	40325394	40325394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001436.3	-1	reviewed	p.K285N	1.000	196	0%	133	34.6%	975	43.6%	benign(0.431)	deleterious(0.03)	deleterious(0.505)	HMMPfam_Fibrillarin,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PSMC4	5704	genome.wustl.edu	37	19	40480651	40480651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006503.2	+1	reviewed	p.D197Y	0.836	148	0%	44	29.5%	204	43.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF546	339327	genome.wustl.edu	37	19	40519597	40519597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178544.3	+1	validated	p.K140N	0.002	14	0%	46	19.6%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
ZNF780B	163131	genome.wustl.edu	37	19	40540339	40540339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005851.2	-1	validated	p.L809F	0.001	188	0%	77	35.1%	8	37.5%	benign(0.001)	tolerated(0.94)	-	superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40580707	40580707	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142577.1	-1	validated	p.R549*	0.190	270	0%	137	42.3%	3	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPTBN4	57731	genome.wustl.edu	37	19	41063300	41063300	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020971.2	+1	reviewed	p.L1887	0.969	9	0.000	7	0.571	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SHKBP1	92799	genome.wustl.edu	37	19	41084113	41084113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138392.3	+1	validated	p.P105H	1.000	58	0%	63	44.4%	41	43.9%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
LTBP4	8425	genome.wustl.edu	37	19	41117783	41117783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000308370	+1	known	p.R758Q	0.020	55	0%	30	50%	3	0%	possibly_damaging(0.478)	tolerated(0.32)	neutral(0.182)	HMMSmart_EGF_CA,superfamily_Grow_fac_recept,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
LTBP4	8425	genome.wustl.edu	37	19	41133146	41133146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000308370	+1	known	p.E1484K	0.140	18	0%	15	60%	9	11.1%	possibly_damaging(0.797)	tolerated(0.31)	neutral(0.327)	NULL
CYP2A6	1548	genome.wustl.edu	37	19	41356317	41356317	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000762.5	-1	reviewed	p.G5	0.255	401	0%	105	44.8%	0	-	-	-	-	NULL
CYP2A7P1	1550	genome.wustl.edu	37	19	41531992	41531992	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000301171	-1	known	p.F138	0.973	29	0.000	7	0.714	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2A13	1553	genome.wustl.edu	37	19	41601807	41601807	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000766.3	+1	reviewed	p.T482	0.010	113	0%	85	54.1%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
AXL	558	genome.wustl.edu	37	19	41749594	41749594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021913.3	+1	reviewed	p.R507W	0.998	55	0%	66	45.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AXL	558	genome.wustl.edu	37	19	41759533	41759533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021913.3	+1	reviewed	p.F652L	1.000	138	0%	42	59.5%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HNRNPUL1	11100	genome.wustl.edu	37	19	41774163	41774163	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007040.3	+1	reviewed	p.Y111D	1.000	214	0%	165	42.4%	135	55.5%	possibly_damaging(0.85)	tolerated(0.38)	neutral(0.345)	NULL
TGFB1	7040	genome.wustl.edu	37	19	41848115	41848115	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000660.4	-1	reviewed	p.S224	0.997	40	0%	38	47.4%	47	10.6%	-	-	-	HMMPfam_TGFb_propeptide
ENSG00000229113	0	genome.wustl.edu	37	19	42027585	42027585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000439847	-1	known	p.R233I	0.114	160	0%	182	36.3%	5	0%	-	-	-	NULL
CEACAM5	1048	genome.wustl.edu	37	19	42221426	42221426	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000398599	+1	known	p.*333R	0.000	318	0%	198	33.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
ATP1A3	478	genome.wustl.edu	37	19	42471389	42471389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000441343	-1	known	p.R1009W	0.000	39	0%	17	64.7%	0	-	unknown(0)	deleterious(0)	-	NULL
ATP1A3	478	genome.wustl.edu	37	19	42473692	42473692	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152296.3	-1	reviewed	p.V861	1.000	142	0%	47	38.3%	0	-	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
POU2F2	5452	genome.wustl.edu	37	19	42599721	42599721	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002698.2	-1	validated	p.F294	1.000	48	0%	27	51.9%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
GSK3A	2931	genome.wustl.edu	37	19	42744142	42744142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019884.2	-1	validated	p.A146T	1.000	76	0%	111	46.8%	110	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
MEGF8	1954	genome.wustl.edu	37	19	42861662	42861662	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001410.2	+1	validated	p.N1579I	1.000	24	0%	23	39.1%	12	41.6%	probably_damaging(0.995)	tolerated(0.44)	deleterious(0.470)	superfamily_Gal_oxid_central
CEACAM8	1088	genome.wustl.edu	37	19	43097963	43097963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001816.3	-1	validated	p.L52I	0.070	502	0%	195	44.1%	0	-	benign(0.403)	deleterious(0.03)	deleterious(0.494)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PSG8	440533	genome.wustl.edu	37	19	43268113	43268113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182707.2	-1	validated	p.D129Y	0.000	987	0.1%	402	41.8%	0	-	benign(0.014)	tolerated(0.53)	neutral(0.008)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
PSG8	440533	genome.wustl.edu	37	19	43269700	43269700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182707.2	-1	validated	p.R12C	0.003	365	0%	107	43%	0	-	probably_damaging(0.963)	tolerated(0.14)	deleterious(0.655)	HMMPfam_V-set
PSG1	5669	genome.wustl.edu	37	19	43382310	43382310	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006905.2	-1	validated	p.L62R	0.000	863	0%	378	42.9%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PSG2	5670	genome.wustl.edu	37	19	43585162	43585162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031246.2	-1	validated	p.A101S	0.003	730	0%	316	12%	0	-	benign(0.016)	tolerated(0.13)	neutral(0.253)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
PSG4	5672	genome.wustl.edu	37	19	43708088	43708088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002780.3	-1	validated	p.R127Q	0.000	871	0.1%	329	43.2%	1	0%	benign(0.128)	tolerated(0.42)	neutral(0.025)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
XRCC1	7515	genome.wustl.edu	37	19	44048382	44048382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006297.2	-1	reviewed	p.F542L	1.000	78	0%	47	38.3%	75	36%	possibly_damaging(0.931)	tolerated(0.17)	neutral(0.436)	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
ZNF404	342908	genome.wustl.edu	37	19	44377326	44377326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001033719.2	-1	validated	p.R347I	0.001	95	0%	36	50%	0	-	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF230	7773	genome.wustl.edu	37	19	44514539	44514539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006300.3	+1	validated	p.F116L	0.000	133	0%	96	43.8%	4	0%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ZNF223	7766	genome.wustl.edu	37	19	44571309	44571309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013361.4	+1	validated	p.R443H	0.081	115	0%	121	52.1%	3	66.6%	possibly_damaging(0.836)	deleterious(0)	deleterious(0.764)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF224	7767	genome.wustl.edu	37	19	44611127	44611127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013398.2	+1	validated	p.D272N	0.000	182	0%	235	48.5%	22	54.5%	benign(0.253)	tolerated(0.22)	neutral(0.068)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF224	7767	genome.wustl.edu	37	19	44611466	44611466	+	Missense_Mutation	SNP	T	T	G	rs3208212	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013398.2	+1	validated	p.S385A	0.014	134	0%	192	44.8%	12	33.3%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF225	7768	genome.wustl.edu	37	19	44636353	44636353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013362.2	+1	validated	p.S529Y	0.000	191	0%	157	52.9%	1	0%	possibly_damaging(0.85)	tolerated(0.2)	neutral(0.376)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF234	10780	genome.wustl.edu	37	19	44661764	44661764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144824.1	+1	validated	p.R532I	0.845	138	0%	102	38.2%	7	42.8%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF234	10780	genome.wustl.edu	37	19	44661890	44661890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144824.1	+1	validated	p.G574E	1.000	236	0%	111	48.6%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF233	353355	genome.wustl.edu	37	19	44777447	44777447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181756.1	+1	provisional	p.H212N	0.000	76	0%	96	46.9%	1	100%	benign(0.251)	tolerated(0.49)	neutral(0.036)	NULL
ZNF229	7772	genome.wustl.edu	37	19	44946773	44946773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014518.2	-1	validated	p.D23Y	0.000	273	0.4%	91	45.1%	8	100%	possibly_damaging(0.933)	tolerated(0.06)	deleterious(0.702)	NULL
ZNF180	7733	genome.wustl.edu	37	19	44980824	44980824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013256.3	-1	validated	p.R625I	0.994	342	0%	168	50.6%	25	52%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44980992	44980992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013256.3	-1	validated	p.R569I	1.000	379	0%	162	41.4%	17	17.6%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981971	44981971	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013256.3	-1	validated	p.E243*	0.000	109	0%	85	49.4%	9	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
CBLC	23624	genome.wustl.edu	37	19	45285708	45285708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012116.3	+1	validated	p.V247L	1.000	38	0%	14	64.3%	49	48.9%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_Cbl_N3,superfamily_SH2 domain
BCAM	4059	genome.wustl.edu	37	19	45322389	45322389	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005581.3	+1	reviewed	p.L471	0.195	109	0%	26	23.1%	64	1.5%	-	-	-	HMMSmart_IG,HMMPfam_C2-set_2,superfamily_SSF48726
ERCC1	2067	genome.wustl.edu	37	19	45916996	45916996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_202001.2	-1	reviewed	p.E261A	1.000	116	0%	181	47.5%	63	42.8%	benign(0.221)	tolerated(0.75)	neutral(0.024)	superfamily_RuvA_2_like
FOSB	2354	genome.wustl.edu	37	19	45973994	45973994	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006732.2	+1	reviewed	p.S78	1.000	39	0.000	9	0.444	1	0%	-	-	-	NULL
RTN2	6253	genome.wustl.edu	37	19	45997447	45997447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005619.3	-1	reviewed	p.F264C	0.957	54	0%	60	36.7%	1	100%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
VASP	7408	genome.wustl.edu	37	19	46024622	46024622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003370.3	+1	reviewed	p.V129A	0.070	62	0%	37	45.9%	54	35.1%	unknown(0)	tolerated(0.39)	-	NULL
GPR4	2828	genome.wustl.edu	37	19	46094790	46094790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005282.2	-1	validated	p.S112L	1.000	51	0%	43	34.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
GPR4	2828	genome.wustl.edu	37	19	46094975	46094975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005282.2	-1	validated	p.N50K	1.000	44	0%	31	51.6%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000248985	0	genome.wustl.edu	37	19	46971535	46971535	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000503237	+1	novel	NULL	0.967	8	0.000	32	0.500	17	58.8%	-	-	-	-
ARHGAP35	2909	genome.wustl.edu	37	19	47421972	47421972	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004491.4	+1	reviewed	p.Y14D	1.000	174	0%	102	36.3%	29	37.9%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47422257	47422257	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004491.4	+1	reviewed	p.R109*	1.000	74	0%	74	48.6%	16	50%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZC3H4	23211	genome.wustl.edu	37	19	47597691	47597691	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015168.1	-1	validated	p.E112	1.000	476	0%	532	46.4%	26	53.8%	-	-	-	NULL
SLC8A2	6543	genome.wustl.edu	37	19	47935469	47935469	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015063.2	-1	validated	p.S782A	0.999	160	0%	47	42.6%	1	100%	benign(0.012)	tolerated(0.4)	neutral(0.017)	HMMPfam_Na_Ca_ex
EHD2	30846	genome.wustl.edu	37	19	48229282	48229282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014601.3	+1	reviewed	p.A239V	1.000	111	0%	17	35.3%	14	0%	benign(0.064)	deleterious(0)	neutral(0.449)	superfamily_P-loop containing nucleoside triphosphate hydrolases
EHD2	30846	genome.wustl.edu	37	19	48239720	48239720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014601.3	+1	reviewed	p.V337A	1.000	140	0%	73	41.1%	20	5%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
SULT2A1	6822	genome.wustl.edu	37	19	48389455	48389455	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003167.3	-1	reviewed	p.S20	0.001	256	0%	243	42%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ELSPBP1	64100	genome.wustl.edu	37	19	48522991	48522991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022142.3	+1	reviewed	p.S124Y	0.597	206	0%	68	35.3%	0	-	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMSmart_SM00059,superfamily_Kringle-like
ELSPBP1	64100	genome.wustl.edu	37	19	48525449	48525449	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022142.3	+1	reviewed	p.G179	0.636	596	0%	171	38.6%	0	-	-	-	-	HMMSmart_SM00059,superfamily_Kringle-like
CABP5	56344	genome.wustl.edu	37	19	48543996	48543996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019855.3	-1	reviewed	p.E35G	1.000	163	0%	53	43.4%	0	-	possibly_damaging(0.578)	deleterious(0)	deleterious(0.643)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
PLA2G4C	8605	genome.wustl.edu	37	19	48598860	48598860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003706.2	-1	reviewed	p.E190D	0.926	55	0%	72	48.6%	0	-	benign(0.138)	tolerated(0.59)	neutral(0.016)	HMMPfam_PLA2_B,HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
CARD8	22900	genome.wustl.edu	37	19	48735048	48735048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014959.3	-1	reviewed	p.E32D	0.001	375	0%	257	44%	7	14.2%	-	-	-	NULL
ZNF114	163071	genome.wustl.edu	37	19	48789404	48789404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153608.1	+1	provisional	p.E175K	0.000	53	0%	69	43.5%	1	0%	benign(0)	tolerated(1)	-	NULL
CCDC114	93233	genome.wustl.edu	37	19	48800853	48800853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144577.3	-1	validated	p.E488D	0.008	71	0%	27	44.4%	1	0%	benign(0.032)	tolerated(0.5)	neutral(0.011)	NULL
EMP3	2014	genome.wustl.edu	37	19	48830826	48830826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001425.2	+1	validated	p.C43R	1.000	133	0%	88	48.9%	37	2.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMP22_Claudin,PatternScan_PMP22_1
IZUMO1	284359	genome.wustl.edu	37	19	49244627	49244627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182575.2	-1	validated	p.M288T	0.009	52	0%	65	38.5%	1	100%	benign(0.033)	tolerated(0.14)	neutral(0.251)	NULL
IZUMO1	284359	genome.wustl.edu	37	19	49247789	49247789	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182575.2	-1	validated	p.L106	0.000	111	0%	100	55%	0	-	-	-	-	NULL
BCAT2	587	genome.wustl.edu	37	19	49299748	49299748	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001190.3	-1	reviewed	p.I359	0.999	142	0%	43	41.9%	61	49.1%	-	-	-	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes
PPP1R15A	23645	genome.wustl.edu	37	19	49377041	49377041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014330.3	+1	validated	p.R184Q	0.001	476	0%	247	44.9%	157	43.9%	possibly_damaging(0.945)	tolerated(0.23)	neutral(0.431)	NULL
PIH1D1	55011	genome.wustl.edu	37	19	49952617	49952617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000416312	-1	known	p.R151L	0.000	11	0%	17	47.1%	3	33.3%	-	-	-	NULL
RPL13A	23521	genome.wustl.edu	37	19	49993501	49993501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012423.2	+1	reviewed	p.V34A	1.000	49	0%	44	47.7%	7996	50.1%	benign(0.224)	tolerated(0.07)	neutral(0.341)	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13
CPT1C	126129	genome.wustl.edu	37	19	50200608	50200608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152359.1	+1	provisional	p.P56L	1.000	284	0%	136	48.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF473	25888	genome.wustl.edu	37	19	50548036	50548036	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006656.1	+1	validated	p.F112	0.001	79	0%	81	44.4%	9	55.5%	-	-	-	NULL
LOC100287477	100287477	genome.wustl.edu	37	19	50562236	50562236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343656.1	-1	model	p.H475N	1.000	17	0%	22	54.5%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IZUMO2	126123	genome.wustl.edu	37	19	50661550	50661550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000377002	-1	known	p.V159M	0.000	359	0%	123	49.6%	0	-	-	-	-	NULL
MYBPC2	4606	genome.wustl.edu	37	19	50945448	50945448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004533.3	+1	validated	p.K260N	0.997	90	0%	64	35.9%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_I-set,superfamily_SSF48726
MYBPC2	4606	genome.wustl.edu	37	19	50958843	50958843	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004533.3	+1	validated	p.P760	0.102	117	0%	65	36.9%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SHANK1	50944	genome.wustl.edu	37	19	51175328	51175328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016148.2	-1	validated	p.R874H	0.992	165	0%	114	24.6%	1	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
SHANK1	50944	genome.wustl.edu	37	19	51192473	51192473	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016148.2	-1	validated	p.F676	1.000	131	0%	50	52%	1	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SHANK1	50944	genome.wustl.edu	37	19	51192554	51192554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000391813	-1	known	p.F36L	0.005	94	0%	36	50%	0	-	unknown(0)	deleterious(0.04)	-	superfamily_PDZ domain-like
KLK1	3816	genome.wustl.edu	37	19	51323414	51323414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002257.2	-1	reviewed	p.E164D	0.000	97	0%	60	48.3%	4	75%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK8	11202	genome.wustl.edu	37	19	51501100	51501100	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144505.1	-1	reviewed	p.I223	0.036	157	0%	101	18.8%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
KLK8	11202	genome.wustl.edu	37	19	51503777	51503777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144505.1	-1	reviewed	p.P90T	1.000	41	0%	27	51.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SIGLEC7	27036	genome.wustl.edu	37	19	51649321	51649321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014385.2	+1	validated	p.N324H	0.013	125	0%	81	51.9%	1	0%	benign(0.026)	tolerated(0.68)	neutral(0.003)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
ETFB	2109	genome.wustl.edu	37	19	51848615	51848615	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001014763.1	-1	reviewed	p.I297	0.413	142	0%	82	43.9%	94	40.4%	-	-	-	superfamily_SSF52402
SIGLEC10	89790	genome.wustl.edu	37	19	51917747	51917747	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033130.4	-1	validated	p.T546	0.000	137	0%	48	39.6%	0	-	-	-	-	NULL
SIGLEC10	89790	genome.wustl.edu	37	19	51918217	51918217	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033130.4	-1	validated	p.F492	0.058	39	0.000	7	0.571	2	0%	-	-	-	superfamily_Immunoglobulin
SIGLEC8	27181	genome.wustl.edu	37	19	51955792	51955792	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014442.2	-1	validated	p.Y447	0.002	94	0%	64	40.6%	0	-	-	-	-	NULL
SIGLEC8	27181	genome.wustl.edu	37	19	51957994	51957994	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014442.2	-1	validated	p.V364	0.000	259	0.4%	92	39.1%	0	-	-	-	-	NULL
SIGLEC8	27181	genome.wustl.edu	37	19	51961495	51961495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014442.2	-1	validated	p.F49L	0.000	302	0%	162	42%	0	-	probably_damaging(0.953)	tolerated(0.27)	neutral(0.430)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52003469	52003469	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053003.2	-1	reviewed	p.C171*	0.038	194	0%	88	39.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF175	7728	genome.wustl.edu	37	19	52090815	52090815	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007147.2	+1	validated	p.K411Q	1.000	104	0%	96	46.9%	3	33.3%	probably_damaging(0.979)	tolerated(0.29)	neutral(0.451)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF175	7728	genome.wustl.edu	37	19	52091067	52091067	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007147.2	+1	validated	p.R495*	0.981	105	0%	72	44.4%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF175	7728	genome.wustl.edu	37	19	52091590	52091590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007147.2	+1	validated	p.R669I	0.963	90	0%	58	44.8%	2	0%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	superfamily_C2H2 and C2HC zinc fingers
FPR3	2359	genome.wustl.edu	37	19	52327118	52327118	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002030.3	+1	validated	p.F39	0.845	590	0%	34	35.3%	1	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
ZNF649	65251	genome.wustl.edu	37	19	52394376	52394376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023074.3	-1	validated	p.R338Q	0.984	491	0.2%	183	18.6%	16	31.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF649	65251	genome.wustl.edu	37	19	52394854	52394854	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_023074.3	-1	validated	p.E179*	0.000	379	0.3%	208	49%	6	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF615	284370	genome.wustl.edu	37	19	52496146	52496146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198480.2	-1	provisional	p.R728I	0.001	235	0%	127	44.1%	5	80%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF432	9668	genome.wustl.edu	37	19	52537082	52537082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014650.2	-1	provisional	p.R617Q	0.638	177	0%	135	44.4%	16	43.7%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52537234	52537234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014650.2	-1	provisional	p.E566D	0.999	156	0%	134	38.8%	10	50%	possibly_damaging(0.697)	deleterious(0.02)	deleterious(0.633)	superfamily_SSF57667
ENSG00000245697	0	genome.wustl.edu	37	19	52568128	52568128	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000377305	+1	novel	NULL	0.011	9	0.000	30	0.400	9	33.3%	-	-	-	-
ZNF616	90317	genome.wustl.edu	37	19	52618795	52618795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178523.3	-1	validated	p.R541I	0.698	199	0%	95	45.3%	9	55.5%	probably_damaging(0.992)	tolerated(0.13)	deleterious(0.700)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52618947	52618947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178523.3	-1	validated	p.E490D	1.000	170	0%	101	37.6%	10	30%	probably_damaging(0.974)	deleterious(0.05)	deleterious(0.761)	superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52619215	52619215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178523.3	-1	validated	p.R401Q	0.000	320	0%	112	45.5%	13	30.7%	probably_damaging(0.989)	tolerated(0.13)	deleterious(0.692)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52658750	52658750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102657.1	-1	provisional	p.R729I	0.567	160	0%	109	42.2%	18	66.6%	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52659047	52659047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102657.1	-1	provisional	p.R630I	0.017	98	0%	113	40.7%	9	66.6%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52660348	52660348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102657.1	-1	provisional	p.E196D	0.001	124	0%	202	41.1%	10	20%	benign(0)	tolerated(0.36)	neutral(0.020)	superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52663814	52663814	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001102657.1	-1	provisional	p.E16*	0.184	195	0%	158	43.7%	8	37.5%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF766	90321	genome.wustl.edu	37	19	52793595	52793595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010851.2	+1	validated	p.R184I	0.094	53	0%	88	12.5%	14	14.2%	benign(0.009)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
ZNF766	90321	genome.wustl.edu	37	19	52794420	52794420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010851.2	+1	validated	p.R459I	0.006	80	0%	141	55.3%	13	23%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52824960	52824960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144684.2	+1	validated	p.Q153K	0.000	74	0%	77	39%	10	50%	benign(0.073)	tolerated(0.67)	neutral(0.007)	NULL
ZNF480	147657	genome.wustl.edu	37	19	52825755	52825755	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144684.2	+1	validated	p.R418*	0.013	100	0%	62	45.2%	6	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52825904	52825904	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144684.2	+1	validated	p.K467	0.000	151	0%	60	41.7%	8	87.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF610	162963	genome.wustl.edu	37	19	52856970	52856970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173530.2	+1	validated	p.F33L	0.954	237	0%	205	42.4%	15	20%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF610	162963	genome.wustl.edu	37	19	52869470	52869470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173530.2	+1	validated	p.R280I	0.143	111	0%	117	50.4%	13	53.8%	possibly_damaging(0.951)	tolerated(0.27)	neutral(0.427)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF880	400713	genome.wustl.edu	37	19	52888216	52888216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145434.1	+1	validated	p.E461D	0.866	180	0%	168	41.1%	15	20%	benign(0.284)	deleterious(0.03)	neutral(0.452)	superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52919808	52919808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032423.2	+1	validated	p.L568R	0.000	147	0%	110	42.7%	29	51.7%	benign(0.005)	tolerated(0.47)	neutral(0.011)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000248326	0	genome.wustl.edu	37	19	53015928	53015928	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000502966	-1	novel	NULL	0.002	48	0%	76	40.8%	1	0%	-	-	-	-
ZNF701	55762	genome.wustl.edu	37	19	53077412	53077412	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018260.2	+1	validated	p.L4	0.008	543	0%	566	46.3%	1	0%	-	-	-	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF83	55769	genome.wustl.edu	37	19	53117228	53117228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105549.1	-1	validated	p.R197I	0.000	234	0%	124	50.8%	22	59%	benign(0.302)	deleterious(0.05)	neutral(0.439)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF83	55769	genome.wustl.edu	37	19	53117396	53117396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105549.1	-1	validated	p.R141I	0.852	185	0%	119	41.2%	22	27.2%	possibly_damaging(0.913)	tolerated(0.08)	deleterious(0.664)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53209626	53209626	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030972.3	-1	validated	p.E228*	0.891	239	0%	325	44.6%	9	33.3%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53209983	53209983	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030972.3	-1	validated	p.E109*	0.003	241	0%	282	40.1%	3	100%	-	-	-	NULL
ZNF600	162966	genome.wustl.edu	37	19	53269960	53269960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198457.2	-1	validated	p.R350I	0.127	237	0%	159	49.7%	12	33.3%	benign(0.424)	tolerated(0.16)	neutral(0.197)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF600	162966	genome.wustl.edu	37	19	53270364	53270364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198457.2	-1	validated	p.E215D	1.000	479	0%	278	41.4%	11	54.5%	possibly_damaging(0.565)	deleterious(0.05)	deleterious(0.538)	superfamily_C2H2 and C2HC zinc fingers
LOC388559	388559	genome.wustl.edu	37	19	53410990	53410990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_496322.5	-1	model	p.F177L	0.000	109	0%	272	44.9%	3	33.3%	-	-	-	NULL
ZNF415	55786	genome.wustl.edu	37	19	53612171	53612171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018355.2	-1	validated	p.R376I	0.121	177	0%	146	43.2%	7	71.4%	benign(0.115)	tolerated(0.08)	neutral(0.309)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF347	84671	genome.wustl.edu	37	19	53644478	53644478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032584.2	-1	validated	p.H535N	1.000	262	0%	147	42.2%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF347	84671	genome.wustl.edu	37	19	53645356	53645356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032584.2	-1	validated	p.F242C	0.000	154	0%	173	34.7%	1	100%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
ZNF665	79788	genome.wustl.edu	37	19	53668552	53668552	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024733.3	-1	provisional	p.T397	0.954	210	0%	278	45%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF665	79788	genome.wustl.edu	37	19	53669091	53669091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024733.3	-1	provisional	p.R218C	0.000	186	0%	226	41.2%	1	0%	probably_damaging(0.985)	tolerated(0.15)	deleterious(0.673)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF677	342926	genome.wustl.edu	37	19	53740594	53740594	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182609.2	-1	provisional	p.N462	0.025	77	0%	118	39.8%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
VN1R2	317701	genome.wustl.edu	37	19	53762652	53762652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173856.2	+1	validated	p.D342N	0.000	299	0.3%	177	41.8%	0	-	benign(0.081)	tolerated(0.54)	neutral(0.013)	superfamily_SSF81321
ZNF845	91664	genome.wustl.edu	37	19	53854397	53854397	+	Missense_Mutation	SNP	G	G	A	rs10415799	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138374.1	+1	validated	p.E157K	0.002	105	0%	222	42.3%	5	40%	benign(0.017)	tolerated(0.55)	neutral(0.007)	NULL
ZNF845	91664	genome.wustl.edu	37	19	53855463	53855463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138374.1	+1	validated	p.R512I	0.000	64	0%	92	37%	7	42.8%	benign(0.034)	tolerated(0.2)	neutral(0.051)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF845	91664	genome.wustl.edu	37	19	53856821	53856821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138374.1	+1	validated	p.H965N	0.906	53	0%	99	48.5%	7	57.1%	possibly_damaging(0.729)	deleterious(0.01)	deleterious(0.671)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF813	126017	genome.wustl.edu	37	19	53993721	53993721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004301.3	+1	validated	p.S79R	0.058	163	0%	154	42.2%	2	50%	benign(0.07)	tolerated(0.07)	neutral(0.324)	NULL
ZNF813	126017	genome.wustl.edu	37	19	53994374	53994374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004301.3	+1	validated	p.E296D	1.000	195	0%	146	43.8%	2	0%	benign(0.004)	tolerated(0.06)	neutral(0.323)	superfamily_SSF57667
MIR520E	574461	genome.wustl.edu	37	19	54178972	54178972	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384867	+1	known	NULL	0.026	118	0%	75	50.7%	0	-	-	-	-	-
MIR526B	574468	genome.wustl.edu	37	19	54197716	54197716	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384848	+1	known	NULL	0.001	262	0%	129	44.2%	0	-	-	-	-	-
MIR520C	574476	genome.wustl.edu	37	19	54210759	54210759	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385005	+1	known	NULL	0.020	219	0%	212	40.1%	0	-	-	-	-	-
MIR524	574478	genome.wustl.edu	37	19	54214290	54214290	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385242	+1	known	NULL	0.075	190	0%	197	47.2%	0	-	-	-	-	-
MIR516B2	574485	genome.wustl.edu	37	19	54228702	54228702	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385190	+1	known	NULL	0.207	206	0%	225	43.6%	0	-	-	-	-	-
MIR518E	574487	genome.wustl.edu	37	19	54233139	54233139	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385252	+1	known	NULL	0.037	57	0%	60	43.3%	0	-	-	-	-	-
MIR516A1	574498	genome.wustl.edu	37	19	54260045	54260045	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000385033	+1	known	NULL	0.288	187	0%	192	25.5%	0	-	-	-	-	-
NLRP12	91662	genome.wustl.edu	37	19	54313965	54313965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144687.2	-1	reviewed	p.E316D	0.897	35	0%	42	42.9%	0	-	benign(0.344)	deleterious(0.03)	deleterious(0.473)	HMMPfam_NACHT
CACNG6	59285	genome.wustl.edu	37	19	54501553	54501553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145814.1	+1	reviewed	p.R131I	1.000	90	0%	62	46.8%	0	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
PRPF31	26121	genome.wustl.edu	37	19	54621754	54621754	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015629.3	+1	reviewed	p.I32	0.984	80	0%	140	50%	122	45%	-	-	-	NULL
LILRA6	79168	genome.wustl.edu	37	19	54744347	54744347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024318.2	-1	validated	p.F354S	0.590	99	0%	118	37.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
LILRA4	23547	genome.wustl.edu	37	19	54849828	54849828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012276.3	-1	reviewed	p.N65S	0.000	101	0%	126	54%	1	0%	benign(0.001)	tolerated(0.95)	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
LILRA2	11027	genome.wustl.edu	37	19	55085366	55085366	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001130917.1	+1	validated	p.V7	0.013	287	0%	151	41.1%	1	0%	-	-	-	NULL
LILRA1	11024	genome.wustl.edu	37	19	55105721	55105721	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006863.1	+1	provisional	p.I4	0.000	175	0%	167	44.3%	0	-	-	-	-	NULL
LILRB1	10859	genome.wustl.edu	37	19	55143459	55143459	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081637.1	+1	reviewed	p.Q144	0.126	172	0%	131	39.7%	0	-	-	-	-	HMMPfam_ig,superfamily_SSF48726
LILRB4	11006	genome.wustl.edu	37	19	55177358	55177358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006847.3	+1	reviewed	p.R284C	0.000	162	0%	50	42%	26	0%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
KIR2DL1	3802	genome.wustl.edu	37	19	55285022	55285022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014218.2	+1	reviewed	p.S103Y	0.022	589	0%	142	92.3%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_SSF48726
KIR3DL1	3811	genome.wustl.edu	37	19	55340890	55340890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013289.2	+1	reviewed	p.L359I	0.001	1267	0%	683	42.5%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
KIR3DL2	3812	genome.wustl.edu	37	19	55378055	55378055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006737.2	+1	reviewed	p.R413C	0.001	889	0%	375	42.9%	0	-	benign(0.03)	tolerated(0.13)	neutral(0.254)	NULL
NCR1	9437	genome.wustl.edu	37	19	55417544	55417544	+	RNA	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_027041.1	+1	validated	NULL	0.143	139	0%	34	35.3%	0	-	-	-	-	-
NCR1	9437	genome.wustl.edu	37	19	55424096	55424096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004829.5	+1	validated	p.R258W	0.000	375	0%	113	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP7	199713	genome.wustl.edu	37	19	55435185	55435185	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127255.1	-1	reviewed	p.E1013*	0.021	229	0%	251	37.1%	1	100%	-	-	-	superfamily_RNI-like
NLRP7	199713	genome.wustl.edu	37	19	55449476	55449476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127255.1	-1	reviewed	p.D689Y	0.000	72	0%	56	39.3%	0	-	benign(0.247)	deleterious(0.04)	neutral(0.374)	superfamily_RNI-like
NLRP2	55655	genome.wustl.edu	37	19	55497679	55497679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017852.3	+1	validated	p.L788I	0.895	72	0%	108	38%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
NLRP2	55655	genome.wustl.edu	37	19	55512244	55512244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017852.3	+1	validated	p.S1056Y	0.004	101	0%	125	44.8%	1	0%	probably_damaging(0.979)	tolerated(0.1)	deleterious(0.708)	NULL
PTPRH	5794	genome.wustl.edu	37	19	55713638	55713638	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002842.3	-1	validated	p.I313	0.905	354	0%	105	50.5%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRH	5794	genome.wustl.edu	37	19	55716737	55716737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002842.3	-1	validated	p.K192N	0.000	326	0.3%	139	46%	0	-	possibly_damaging(0.852)	tolerated(0.39)	neutral(0.344)	HMMPfam_fn3,HMMSmart_SM00060
ZNF628	89887	genome.wustl.edu	37	19	55995476	55995476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033113.2	+1	validated	p.Q968H	0.741	10	0.000	9	0.778	16	56.2%	unknown(0)	deleterious(0)	-	NULL
NLRP9	338321	genome.wustl.edu	37	19	56228179	56228179	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176820.2	-1	reviewed	p.L749	0.000	30	0%	99	43.4%	0	-	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
NLRP9	338321	genome.wustl.edu	37	19	56244017	56244017	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176820.2	-1	reviewed	p.S394R	0.001	208	0%	144	43.8%	0	-	benign(0.047)	deleterious(0.05)	neutral(0.348)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56244282	56244282	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176820.2	-1	reviewed	p.S305	0.056	109	0%	105	46.7%	0	-	-	-	-	HMMPfam_NACHT
ENSG00000229292	0	genome.wustl.edu	37	19	56284098	56284098	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000341750	+1	known	p.C139	0.155	393	0%	112	16.1%	0	-	-	-	-	HMMSmart_SM00589
NLRP4	147945	genome.wustl.edu	37	19	56369747	56369747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_134444.4	+1	validated	p.E330*	0.000	41	0%	36	44.4%	0	-	-	-	-	NULL
NLRP4	147945	genome.wustl.edu	37	19	56388468	56388468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_134444.4	+1	validated	p.D878Y	0.015	377	0%	148	46.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00368,superfamily_RNI-like
NLRP13	126204	genome.wustl.edu	37	19	56407479	56407479	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176810.2	-1	validated	p.A988	0.000	185	0%	62	51.6%	0	-	-	-	-	superfamily_SSF52047
NLRP13	126204	genome.wustl.edu	37	19	56423965	56423965	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176810.2	-1	validated	p.E406	0.000	147	0%	85	50.6%	0	-	-	-	-	NULL
NLRP13	126204	genome.wustl.edu	37	19	56424141	56424141	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176810.2	-1	validated	p.L348V	0.015	173	0%	88	40.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NACHT
LOC646698	646698	genome.wustl.edu	37	19	56758852	56758852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001725568.1	+1	model	p.E494*	0.002	30	0%	27	55.6%	17	11.7%	-	-	-	NULL
ZNF582	147948	genome.wustl.edu	37	19	56895388	56895388	+	Silent	SNP	G	G	A	rs185773528	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144690.1	-1	provisional	p.T466	0.000	392	0.3%	281	44.1%	4	75%	-	-	-	NULL
ZNF582	147948	genome.wustl.edu	37	19	56895679	56895679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144690.1	-1	provisional	p.C369*	0.021	118	0%	81	44.4%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF583	147949	genome.wustl.edu	37	19	56935061	56935061	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152478.2	+1	validated	p.I345S	0.997	368	0%	105	45.7%	12	25%	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF583	147949	genome.wustl.edu	37	19	56935142	56935142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152478.2	+1	validated	p.R372K	1.000	322	0%	94	39.4%	9	11.1%	possibly_damaging(0.859)	tolerated(0.06)	deleterious(0.655)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF583	147949	genome.wustl.edu	37	19	56935394	56935394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152478.2	+1	validated	p.R456I	0.240	182	0%	59	37.3%	10	70%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF667	63934	genome.wustl.edu	37	19	56952992	56952992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022103.3	-1	validated	p.L458I	0.781	100	0%	60	38.3%	8	12.5%	benign(0.054)	deleterious(0.01)	neutral(0.409)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF667	63934	genome.wustl.edu	37	19	56969614	56969614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022103.3	-1	validated	p.L55I	0.882	154	0%	58	58.6%	6	50%	possibly_damaging(0.892)	tolerated(0.48)	neutral(0.362)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF471	57573	genome.wustl.edu	37	19	57035887	57035887	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020813.2	+1	validated	p.E151*	0.001	68	0%	115	44.3%	3	66.6%	-	-	-	NULL
ZFP28	140612	genome.wustl.edu	37	19	57065728	57065728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020828.1	+1	provisional	p.R525I	0.991	65	0%	50	32%	5	20%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZFP28	140612	genome.wustl.edu	37	19	57066500	57066500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020828.1	+1	provisional	p.K782N	0.998	175	0%	110	47.3%	5	100%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_SSF57667
ZNF470	388566	genome.wustl.edu	37	19	57086053	57086053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001668.3	+1	validated	p.E78D	0.573	136	0%	83	39.8%	6	16.6%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF470	388566	genome.wustl.edu	37	19	57089493	57089493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001668.3	+1	validated	p.E566K	0.127	156	0%	61	36.1%	9	22.2%	benign(0.018)	tolerated(0.59)	neutral(0.005)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZIM2	23619	genome.wustl.edu	37	19	57293343	57293343	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015363.4	-1	reviewed	p.N208K	0.996	194	0%	27	37%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PEG3	5178	genome.wustl.edu	37	19	57325289	57325289	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006210.2	-1	reviewed	p.C1507	0.115	332	0%	68	39.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57325945	57325945	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006210.2	-1	reviewed	p.E1289*	0.626	238	0%	68	45.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57326262	57326262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006210.2	-1	reviewed	p.R1183I	0.035	270	0%	80	46.3%	1	0%	possibly_damaging(0.951)	tolerated(0.08)	deleterious(0.694)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57327049	57327049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006210.2	-1	reviewed	p.E921K	0.000	179	0%	75	37.3%	0	-	probably_damaging(0.954)	tolerated(1)	neutral(0.398)	NULL
PEG3	5178	genome.wustl.edu	37	19	57327232	57327232	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006210.2	-1	reviewed	p.E860*	0.995	192	0%	97	46.4%	0	-	-	-	-	NULL
PEG3	5178	genome.wustl.edu	37	19	57328294	57328294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006210.2	-1	reviewed	p.E506*	0.264	466	0%	133	46.6%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PEG3	5178	genome.wustl.edu	37	19	57334151	57334151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006210.2	-1	reviewed	p.R179C	0.804	231	0%	72	45.8%	0	-	benign(0.028)	deleterious(0)	neutral(0.446)	NULL
USP29	57663	genome.wustl.edu	37	19	57641066	57641066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020903.2	+1	validated	p.F341L	0.041	56	0%	56	50%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_UCH,superfamily_SSF54001
USP29	57663	genome.wustl.edu	37	19	57641471	57641471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020903.2	+1	validated	p.F476L	0.935	125	0%	157	22.9%	0	-	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_UCH,superfamily_SSF54001
USP29	57663	genome.wustl.edu	37	19	57642590	57642590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020903.2	+1	validated	p.Q849H	0.970	101	0%	53	43.4%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_UCH,superfamily_SSF54001
ZIM3	114026	genome.wustl.edu	37	19	57646877	57646877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052882.1	-1	provisional	p.K276N	1.000	190	0%	195	46.2%	0	-	possibly_damaging(0.639)	deleterious(0.01)	deleterious(0.629)	superfamily_SSF57667
ZIM3	114026	genome.wustl.edu	37	19	57646993	57646993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052882.1	-1	provisional	p.L238I	0.012	237	0%	198	48%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DUXA	503835	genome.wustl.edu	37	19	57669740	57669740	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012729.1	-1	validated	p.E132*	0.994	123	0%	136	45.6%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
DUXA	503835	genome.wustl.edu	37	19	57672040	57672040	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012729.1	-1	validated	p.E51*	0.118	271	0%	468	91.5%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ZNF264	9422	genome.wustl.edu	37	19	57723537	57723537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003417.4	+1	reviewed	p.L358I	0.102	157	0%	59	47.5%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF805	390980	genome.wustl.edu	37	19	57765994	57765994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145078.1	+1	validated	p.L470I	1.000	114	0%	81	42%	7	85.7%	benign(0.002)	tolerated(0.55)	neutral(0.007)	NULL
LOC100288211	100288211	genome.wustl.edu	37	19	57828814	57828814	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343660.1	-1	model	p.E39	1.000	239	0%	236	43.6%	0	-	-	-	-	HMMPfam_DUF862
ZNF304	57343	genome.wustl.edu	37	19	57868613	57868613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020657.2	+1	validated	p.K459R	0.013	214	0.5%	88	43.2%	8	37.5%	probably_damaging(0.987)	tolerated(0.16)	deleterious(0.496)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRAPPC2P1	10597	genome.wustl.edu	37	19	57876539	57876539	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_002166.1	+1	provisional	NULL	1.000	95	0%	191	38.7%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
TRAPPC2P1	10597	genome.wustl.edu	37	19	57876598	57876598	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_002166.1	+1	provisional	NULL	1.000	88	0%	175	55.4%	8	62.5%	benign(0)	tolerated(0.21)	neutral(0.044)	-
LOC100129081	100129081	genome.wustl.edu	37	19	57910417	57910417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001718521.2	-1	model	p.L223F	0.000	226	0%	81	49.4%	14	64.2%	-	-	-	NULL
ZNF749	388567	genome.wustl.edu	37	19	57955495	57955495	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001023561.2	+1	provisional	p.E327*	0.001	163	0%	58	43.1%	2	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF773	374928	genome.wustl.edu	37	19	58018435	58018435	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198542.1	+1	provisional	p.V324	0.543	315	0%	186	37.1%	14	21.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58049531	58049531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153263.1	+1	provisional	p.G374W	1.000	176	0%	103	41.7%	5	40%	benign(0.026)	deleterious(0)	neutral(0.446)	superfamily_C2H2 and C2HC zinc fingers
ZNF550	162972	genome.wustl.edu	37	19	58058582	58058582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039654.1	-1	provisional	p.D303Y	0.004	139	0%	114	39.5%	8	50%	benign(0.296)	deleterious(0)	deleterious(0.536)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZIK1	284307	genome.wustl.edu	37	19	58102522	58102522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010879.2	+1	provisional	p.S448F	0.000	198	0%	132	43.2%	0	-	benign(0.407)	tolerated(0.42)	neutral(0.146)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF530	348327	genome.wustl.edu	37	19	58117583	58117583	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020880.3	+1	validated	p.Q230H	0.000	103	1%	77	42.9%	1	0%	benign(0.376)	tolerated(0.06)	neutral(0.443)	superfamily_SSF57667
ZNF134	7693	genome.wustl.edu	37	19	58132662	58132662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003435.3	+1	provisional	p.R392I	0.926	180	0.6%	89	43.8%	17	41.1%	probably_damaging(0.966)	deleterious(0.05)	deleterious(0.753)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF211	10520	genome.wustl.edu	37	19	58152349	58152349	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006385.3	+1	validated	p.S178R	0.000	154	0%	54	57.4%	6	50%	benign(0.019)	tolerated(0.41)	neutral(0.016)	NULL
ZNF551	90233	genome.wustl.edu	37	19	58198683	58198683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138347.3	+1	validated	p.K331R	0.000	183	0%	117	47.9%	5	40%	probably_damaging(0.975)	tolerated(0.46)	neutral(0.429)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF586	54807	genome.wustl.edu	37	19	58290764	58290764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017652.2	+1	validated	p.S270*	0.503	160	0%	156	40.4%	13	46.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF814	730051	genome.wustl.edu	37	19	58384254	58384254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144989.1	-1	validated	p.K835T	0.626	400	0%	249	49.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF417	147687	genome.wustl.edu	37	19	58420218	58420218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152475.2	-1	validated	p.K476N	0.000	318	0%	213	48.8%	5	60%	benign(0.226)	tolerated(0.19)	neutral(0.072)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF417	147687	genome.wustl.edu	37	19	58420483	58420483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152475.2	-1	validated	p.S388Y	0.524	435	0%	251	47%	3	33.3%	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF418	147686	genome.wustl.edu	37	19	58438212	58438212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133460.1	-1	provisional	p.R446Q	0.000	245	0%	198	46%	2	50%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF606	80095	genome.wustl.edu	37	19	58489681	58489681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025027.3	-1	validated	p.E789D	1.000	68	0%	98	51%	9	55.5%	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_C2H2 and C2HC zinc fingers
ZNF329	79673	genome.wustl.edu	37	19	58640035	58640035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024620.3	-1	validated	p.R279K	1.000	75	0%	213	40.4%	11	36.3%	benign(0.039)	tolerated(0.15)	neutral(0.243)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C20orf96	140680	genome.wustl.edu	37	20	258995	258995	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153269.1	-1	predicted	p.E181*	0.464	101	0%	254	47.2%	56	12.5%	-	-	-	NULL
CSNK2A1	1457	genome.wustl.edu	37	20	485767	485767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001895.3	-1	reviewed	p.L70I	1.000	125	0%	275	41.5%	44	40.9%	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SNPH	9751	genome.wustl.edu	37	20	1277836	1277836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014723.2	+1	reviewed	p.S33L	1.000	60	0%	12	41.7%	0	-	possibly_damaging(0.454)	tolerated(0.05)	deleterious(0.494)	NULL
SIRPB2	284759	genome.wustl.edu	37	20	1460544	1460544	+	Silent	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001122962.1	-1	validated	p.I84	0.995	145	0%	76	40.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIRPB1	10326	genome.wustl.edu	37	20	1600556	1600556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135844.1	-1	reviewed	p.S12I	0.000	177	0%	46	45.7%	0	-	benign(0.014)	tolerated(0.37)	neutral(0.019)	NULL
ZNF343	79175	genome.wustl.edu	37	20	2464058	2464058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024325.4	-1	validated	p.N517D	0.986	286	0%	117	45.3%	16	37.5%	benign(0.022)	deleterious(0.01)	neutral(0.407)	superfamily_C2H2 and C2HC zinc fingers
TMC2	117532	genome.wustl.edu	37	20	2598135	2598135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000435863	+1	known	p.F142L	0.000	10	0.000	7	0.571	0	-	-	-	-	NULL
NOP56	10528	genome.wustl.edu	37	20	2635400	2635400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006392.2	+1	reviewed	p.R126C	1.000	45	0%	78	41%	114	49.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS16	64601	genome.wustl.edu	37	20	2842490	2842490	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022575.2	+1	reviewed	p.L313	0.935	51	0%	70	55.7%	31	41.9%	-	-	-	HMMPfam_Vps16_N
VPS16	64601	genome.wustl.edu	37	20	2843543	2843543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022575.2	+1	reviewed	p.R432W	0.977	40	0%	39	43.6%	26	69.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GNRH2	2797	genome.wustl.edu	37	20	3025459	3025459	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001501.1	+1	reviewed	p.R97*	0.269	8	0.000	11	0.636	0	-	-	-	-	NULL
C20orf194	25943	genome.wustl.edu	37	20	3298959	3298959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009984.1	-1	validated	p.S482Y	1.000	60	0%	57	33.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAM33	80332	genome.wustl.edu	37	20	3655727	3655727	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025220.2	-1	reviewed	p.E94*	1.000	18	0%	22	45.5%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
RASSF2	9770	genome.wustl.edu	37	20	4771127	4771127	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014737.2	-1	reviewed	p.F169	1.000	76	0%	48	39.6%	9	55.5%	-	-	-	NULL
RASSF2	9770	genome.wustl.edu	37	20	4778660	4778660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014737.2	-1	reviewed	p.R44Q	1.000	215	0%	167	44.9%	3	0%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	NULL
SLC23A2	9962	genome.wustl.edu	37	20	4883190	4883190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005116.5	-1	reviewed	p.E74D	1.000	76	0%	39	17.9%	5	20%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
PCNA	5111	genome.wustl.edu	37	20	5099316	5099316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002592.2	-1	reviewed	p.E109D	0.989	149	0%	247	43.7%	300	41.3%	benign(0)	tolerated(1)	-	HMMPfam_PCNA_N,superfamily_DNA clamp
PROKR2	128674	genome.wustl.edu	37	20	5282830	5282830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144773.2	-1	reviewed	p.K337N	1.000	214	0%	88	53.4%	0	-	possibly_damaging(0.948)	tolerated(0.85)	neutral(0.392)	superfamily_SSF81321
C20orf196	149840	genome.wustl.edu	37	20	5843675	5843675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152504.2	+1	predicted	p.S62R	0.000	45	0%	31	38.7%	13	69.2%	possibly_damaging(0.846)	deleterious(0.05)	deleterious(0.670)	NULL
CHGB	1114	genome.wustl.edu	37	20	5903504	5903504	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001819.2	+1	reviewed	p.E238	0.999	160	0%	92	37%	0	-	-	-	-	HMMPfam_Granin
CHGB	1114	genome.wustl.edu	37	20	5904270	5904270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001819.2	+1	reviewed	p.E494*	0.008	132	0%	59	52.5%	0	-	-	-	-	HMMPfam_Granin
MCM8	84515	genome.wustl.edu	37	20	5974963	5974963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032485.4	+1	reviewed	p.F817V	1.000	55	0%	100	45%	13	61.5%	benign(0.009)	tolerated(0.24)	neutral(0.038)	NULL
FERMT1	55612	genome.wustl.edu	37	20	6069726	6069726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017671.4	-1	reviewed	p.L384V	0.999	231	0%	288	39.2%	7	71.4%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like
BMP2	650	genome.wustl.edu	37	20	6759008	6759008	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001200.2	+1	reviewed	p.E155*	1.000	19	0%	50	46%	15	46.6%	-	-	-	HMMPfam_TGFb_propeptide
PLCB1	23236	genome.wustl.edu	37	20	8862337	8862337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015192.2	+1	reviewed	p.F1164L	0.114	116	0%	40	47.5%	20	55%	benign(0.026)	tolerated(0.55)	neutral(0.008)	HMMPfam_PLC-beta_C
PAK7	57144	genome.wustl.edu	37	20	9520225	9520225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020341.3	-1	reviewed	p.V682M	1.000	262	0.8%	60	38.3%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PAK7	57144	genome.wustl.edu	37	20	9538358	9538358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020341.3	-1	reviewed	p.T547N	1.000	159	0%	49	38.8%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ANKRD5	63926	genome.wustl.edu	37	20	10018998	10018998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022096.4	+1	validated	p.L17I	1.000	66	0%	45	40%	10	10%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_Ankyrin repeat
SNAP25	6616	genome.wustl.edu	37	20	10280021	10280021	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003081.2	+1	reviewed	p.I171	0.927	137	0%	20	65%	1	0%	-	-	-	HMMPfam_SNARE,HMMSmart_SM00397
JAG1	182	genome.wustl.edu	37	20	10621522	10621522	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000214.2	-1	reviewed	p.I1036	0.705	167	0%	163	46.6%	10	40%	-	-	-	NULL
BTBD3	22903	genome.wustl.edu	37	20	11903917	11903917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014962.2	+1	validated	p.R391H	1.000	106	0%	43	62.8%	38	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_PHR
ISM1	140862	genome.wustl.edu	37	20	13273053	13273053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080826.1	+1	validated	p.E274K	1.000	415	0%	186	48.4%	19	15.7%	possibly_damaging(0.923)	tolerated(0.07)	deleterious(0.692)	NULL
ESF1	51575	genome.wustl.edu	37	20	13755840	13755840	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016649.3	-1	provisional	p.S371*	1.000	117	0%	201	43.8%	8	0%	-	-	-	NULL
SEL1L2	80343	genome.wustl.edu	37	20	13868480	13868480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025229.1	-1	validated	p.S227L	1.000	168	0%	213	45.5%	0	-	benign(0.323)	tolerated(0.62)	neutral(0.105)	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901
KIF16B	55614	genome.wustl.edu	37	20	16354934	16354934	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024704.3	-1	validated	p.E1106D	0.339	116	0%	55	58.2%	6	50%	possibly_damaging(0.799)	tolerated(0.48)	neutral(0.311)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16506742	16506742	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024704.3	-1	validated	p.E76*	1.000	199	0%	104	44.2%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
SNRPB2	6629	genome.wustl.edu	37	20	16712828	16712828	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003092.3	+1	reviewed	p.Y28	1.000	185	0%	111	47.7%	86	48.8%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PCSK2	5126	genome.wustl.edu	37	20	17434458	17434458	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002594.2	+1	reviewed	p.C319	0.890	81	0%	30	56.7%	0	-	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
SNX5	27131	genome.wustl.edu	37	20	17930973	17930973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014426.2	-1	reviewed	p.S226Y	1.000	109	0%	94	46.8%	85	55.2%	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	HMMPfam_Vps5
CSRP2BP	57325	genome.wustl.edu	37	20	18142572	18142572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020536.4	+1	reviewed	p.R264Q	1.000	64	0%	63	20.6%	20	30%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18163814	18163814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020536.4	+1	reviewed	p.I619S	1.000	129	0%	124	41.9%	23	39.1%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
ZNF133	7692	genome.wustl.edu	37	20	18296661	18296661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001083330.1	+1	validated	p.R388Q	0.963	101	0%	35	54.3%	27	37%	benign(0.033)	tolerated(0.19)	neutral(0.051)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SLC24A3	57419	genome.wustl.edu	37	20	19665811	19665811	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020689.3	+1	validated	p.I377S	0.952	174	0%	107	49.5%	8	62.5%	benign(0.002)	tolerated(0.76)	neutral(0.001)	NULL
C20orf26	26074	genome.wustl.edu	37	20	20054952	20054952	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015585.3	+1	validated	p.N101H	1.000	357	0%	151	45.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XRN2	22803	genome.wustl.edu	37	20	21327089	21327089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012255.3	+1	reviewed	p.K522N	0.995	218	0%	91	37.4%	82	41.4%	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	NULL
GZF1	64412	genome.wustl.edu	37	20	23345449	23345449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022482.3	+1	validated	p.F143L	1.000	72	0%	102	41.2%	11	36.3%	benign(0.428)	tolerated(0.37)	neutral(0.158)	NULL
GZF1	64412	genome.wustl.edu	37	20	23351031	23351031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022482.3	+1	validated	p.T697A	0.730	160	0%	30	33.3%	15	73.3%	benign(0)	tolerated(0.9)	-	NULL
CST3	1471	genome.wustl.edu	37	20	23615961	23615961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000099.2	-1	reviewed	p.R96Q	0.663	188	0%	94	44.7%	565	31.3%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
CST1	1469	genome.wustl.edu	37	20	23729739	23729739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001898.2	-1	reviewed	p.D86N	0.024	302	0%	107	36.4%	17	35.2%	possibly_damaging(0.67)	tolerated(0.11)	deleterious(0.509)	HMMPfam_Cystatin,HMMSmart_SM00043,PatternScan_CYSTATIN,superfamily_Cystatin/monellin
VSX1	30813	genome.wustl.edu	37	20	25057171	25057171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014588.4	-1	reviewed	p.S275F	0.994	83	0%	87	56.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NINL	22981	genome.wustl.edu	37	20	25470566	25470566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025176.4	-1	validated	p.S514L	0.259	228	0.4%	153	52.9%	30	46.6%	possibly_damaging(0.888)	tolerated(0.12)	deleterious(0.608)	NULL
NINL	22981	genome.wustl.edu	37	20	25484639	25484639	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_025176.4	-1	validated	p.L270	0.003	103	0%	148	43.2%	20	70%	-	-	-	superfamily_SSF47473
ZNF337	26152	genome.wustl.edu	37	20	25656453	25656453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015655.2	-1	validated	p.R491W	0.021	265	0%	84	44%	17	58.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF337	26152	genome.wustl.edu	37	20	25657018	25657018	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015655.2	-1	validated	p.N302	0.000	279	0%	106	42.5%	10	30%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FRG1B	284802	genome.wustl.edu	37	20	29631574	29631574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000278882	+1	known	p.D124Y	1.000	51	0%	69	26.1%	51	21.5%	possibly_damaging(0.901)	tolerated(0.06)	deleterious(0.679)	HMMPfam_FRG1
FRG1B	284802	genome.wustl.edu	37	20	29633899	29633899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000278882	+1	known	p.E180*	1.000	300	0%	503	13.9%	13	38.4%	-	-	-	NULL
DEFB119	245932	genome.wustl.edu	37	20	29965097	29965097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153289.2	-1	validated	p.E69D	0.000	334	0%	90	48.9%	0	-	possibly_damaging(0.892)	tolerated(0.16)	neutral(0.411)	NULL
DEFB119	245932	genome.wustl.edu	37	20	29965181	29965181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153289.2	-1	validated	p.K41N	0.039	368	0.3%	105	29.5%	0	-	benign(0.141)	deleterious(0.01)	neutral(0.418)	NULL
DEFB119	245932	genome.wustl.edu	37	20	29976857	29976857	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153323.3	-1	validated	p.K80Q	0.000	412	0%	127	42.5%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
DEFB119	245932	genome.wustl.edu	37	20	29976958	29976958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153323.3	-1	validated	p.R46H	0.156	436	0%	102	41.2%	0	-	probably_damaging(0.973)	tolerated(0.19)	neutral(0.464)	NULL
DEFB121	245934	genome.wustl.edu	37	20	29993949	29993949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011878.2	-1	validated	p.L3I	0.051	185	0%	59	42.4%	0	-	unknown(0)	-	-	NULL
FOXS1	2307	genome.wustl.edu	37	20	30432905	30432905	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004118.3	-1	reviewed	p.T147	0.000	48	0%	28	46.4%	0	-	-	-	-	NULL
PLAGL2	5326	genome.wustl.edu	37	20	30785344	30785344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002657.3	-1	reviewed	p.K134N	1.000	127	0%	49	36.7%	11	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POFUT1	23509	genome.wustl.edu	37	20	30804467	30804467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015352.1	+1	reviewed	p.S162L	1.000	132	0%	202	50.5%	20	60%	possibly_damaging(0.922)	deleterious(0.03)	deleterious(0.736)	HMMPfam_O-FucT
ASXL1	171023	genome.wustl.edu	37	20	31019136	31019136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015338.5	+1	reviewed	p.R244H	1.000	124	0%	130	46.9%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31021481	31021481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015338.5	+1	reviewed	p.P494S	0.003	47	0%	38	36.8%	12	25%	benign(0.246)	tolerated(0.46)	neutral(0.037)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31024197	31024197	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015338.5	+1	reviewed	p.E1228*	1.000	77	0%	88	51.1%	15	53.3%	-	-	-	NULL
COMMD7	149951	genome.wustl.edu	37	20	31315792	31315792	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_053041.2	-1	validated	p.F50C	0.970	311	0%	150	52%	59	47.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HCaRG
DNMT3B	1789	genome.wustl.edu	37	20	31379488	31379488	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006892.3	+1	reviewed	p.R299*	1.000	291	0%	116	42.2%	8	0%	-	-	-	superfamily_Tudor/PWWP/MBT
EFCAB8	388795	genome.wustl.edu	37	20	31481047	31481047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000440534	+1	known	p.E276K	0.006	125	0%	89	56.2%	0	-	benign(0.004)	tolerated(0.49)	neutral(0.011)	superfamily_WD40 repeat-like
EFCAB8	388795	genome.wustl.edu	37	20	31500622	31500622	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000440534	+1	known	p.N603T	0.725	428	0%	394	40.6%	0	-	probably_damaging(0.99)	tolerated(0.53)	neutral(0.449)	superfamily_WD40 repeat-like
EFCAB8	388795	genome.wustl.edu	37	20	31548941	31548941	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000440534	+1	known	e26-1	1.000	159	0%	32	59.4%	0	-	-	-	-	-
SUN5	140732	genome.wustl.edu	37	20	31583447	31583447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080675.3	-1	validated	p.E171G	0.079	138	0%	50	14%	0	-	benign(0.132)	tolerated(0.14)	neutral(0.261)	NULL
BPIFB3	359710	genome.wustl.edu	37	20	31652628	31652628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182658.1	+1	provisional	p.D301N	0.029	41	0%	20	30%	0	-	benign(0.001)	tolerated(0.28)	neutral(0.032)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFA2	140683	genome.wustl.edu	37	20	31763346	31763346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080574.2	+1	validated	p.S182P	0.002	196	0%	94	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFB1	92747	genome.wustl.edu	37	20	31885389	31885389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033197.2	+1	reviewed	p.V219G	0.000	572	0.2%	105	47.6%	0	-	possibly_damaging(0.844)	deleterious(0.01)	deleterious(0.729)	HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
CDK5RAP1	51654	genome.wustl.edu	37	20	31979980	31979980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016408.2	-1	reviewed	p.R171H	0.930	77	0%	64	51.6%	17	70.5%	benign(0.305)	tolerated(0.13)	neutral(0.348)	HMMPfam_UPF0004
EIF2S2	8894	genome.wustl.edu	37	20	32693352	32693352	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003908.3	-1	reviewed	e2-1	1.000	109	0%	219	40.2%	0	-	-	-	-	-
GSS	2937	genome.wustl.edu	37	20	33530352	33530352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000178.2	-1	reviewed	p.E144K	1.000	53	0%	35	42.9%	53	41.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GSH_synth_ATP,superfamily_SSF56059
CEP250	11190	genome.wustl.edu	37	20	34082451	34082451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007186.3	+1	reviewed	p.R1045Q	0.115	117	0%	100	40%	32	50%	benign(0.006)	tolerated(0.1)	neutral(0.286)	NULL
C20orf24	55969	genome.wustl.edu	37	20	35236156	35236156	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199483.1	+1	validated	p.I51	1.000	385	0.3%	428	42.1%	212	46.2%	-	-	-	HMMPfam_Rab5ip
NDRG3	57446	genome.wustl.edu	37	20	35293467	35293467	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032013.2	-1	validated	p.S264	0.940	227	0%	158	48.1%	34	38.2%	-	-	-	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
DSN1	79980	genome.wustl.edu	37	20	35399324	35399324	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145315.1	-1	reviewed	p.E103*	0.941	232	0%	75	42.7%	8	50%	-	-	-	HMMPfam_Mis12_component
C20orf118	140711	genome.wustl.edu	37	20	35506344	35506344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080628.1	+1	predicted	p.E26K	0.101	33	0%	23	43.5%	0	-	possibly_damaging(0.85)	tolerated(0.21)	neutral(0.371)	NULL
SAMHD1	25939	genome.wustl.edu	37	20	35526342	35526342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015474.3	-1	reviewed	p.E543D	0.349	73	0%	133	50.4%	27	37%	benign(0.048)	tolerated(0.24)	neutral(0.041)	NULL
RBL1	5933	genome.wustl.edu	37	20	35649117	35649117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002895.2	-1	reviewed	p.R859I	1.000	43	0%	90	38.9%	6	66.6%	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like
RBL1	5933	genome.wustl.edu	37	20	35696404	35696404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002895.2	-1	reviewed	p.R159Q	1.000	51	0%	140	52.9%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C20orf132	140699	genome.wustl.edu	37	20	35787331	35787331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000400441	-1	known	p.I279M	0.000	224	0%	82	46.3%	7	14.2%	benign(0.323)	tolerated(0.25)	neutral(0.138)	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36361311	36361311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030877.3	+1	reviewed	p.D21Y	1.000	111	0%	67	47.8%	34	41.1%	benign(0.154)	tolerated(0.37)	neutral(0.033)	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36396389	36396389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030877.3	+1	reviewed	p.E231D	1.000	804	0%	68	48.5%	35	45.7%	benign(0.001)	tolerated(0.59)	neutral(0.004)	superfamily_ARM repeat
TGM2	7052	genome.wustl.edu	37	20	36768027	36768027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004613.2	-1	reviewed	p.R377C	0.554	130	0%	35	34.3%	69	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cysteine proteinases
FAM83D	81610	genome.wustl.edu	37	20	37580707	37580707	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030919.2	+1	validated	p.T464	0.000	97	0%	56	42.9%	39	46.1%	-	-	-	NULL
TOP1	7150	genome.wustl.edu	37	20	39742739	39742739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003286.2	+1	reviewed	p.D528Y	1.000	91	0%	37	45.9%	85	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DNA breaking-rejoining enzymes,HMMSmart_SM00435,HMMPfam_Topoisom_I
PLCG1	5335	genome.wustl.edu	37	20	39801481	39801481	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002660.2	+1	reviewed	p.S1081	0.993	121	0%	40	52.5%	94	52.1%	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
CHD6	84181	genome.wustl.edu	37	20	40050062	40050062	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032221.3	-1	reviewed	p.S1738*	0.008	77	0%	52	48.1%	7	14.2%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40084587	40084587	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032221.3	-1	reviewed	p.D954	0.987	244	0%	75	37.3%	8	62.5%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40162105	40162105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032221.3	-1	reviewed	p.E46D	0.974	103	0%	72	40.3%	6	66.6%	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
PTPRT	11122	genome.wustl.edu	37	20	41076913	41076913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_133170.3	-1	reviewed	p.Y503D	1.000	203	0%	50	52%	0	-	benign(0.119)	deleterious(0.02)	neutral(0.393)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TTPAL	79183	genome.wustl.edu	37	20	43115252	43115252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039199.1	+1	validated	p.R219Q	1.000	142	0%	128	43.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
ADA	100	genome.wustl.edu	37	20	43255234	43255234	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000022.2	-1	reviewed	p.C75	1.000	89	0%	78	46.2%	1	0%	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
PABPC1L	80336	genome.wustl.edu	37	20	43564136	43564136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001124756.1	+1	provisional	p.R517W	0.000	78	0%	21	47.6%	21	38%	possibly_damaging(0.732)	deleterious(0.02)	deleterious(0.651)	superfamily_PABP_HYD
SDC4	6385	genome.wustl.edu	37	20	43955949	43955949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002999.2	-1	reviewed	p.K184N	1.000	193	0%	65	47.7%	96	45.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00294
TP53TG5	27296	genome.wustl.edu	37	20	44006834	44006834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014477.2	-1	validated	p.S15P	0.813	295	0%	80	42.5%	1	100%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
DBNDD2	55861	genome.wustl.edu	37	20	44037117	44037117	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001048221.1	+1	validated	p.N4H	1.000	50	0%	26	50%	14	21.4%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Dysbindin
SNX21	90203	genome.wustl.edu	37	20	44469923	44469923	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033421.2	+1	reviewed	p.E365*	1.000	23	0.000	9	0.444	9	33.3%	-	-	-	NULL
ZSWIM3	140831	genome.wustl.edu	37	20	44486535	44486535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080752.2	+1	validated	p.N24S	1.000	29	0%	23	56.5%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
NEURL2	140825	genome.wustl.edu	37	20	44517426	44517426	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080749.2	-1	validated	p.E277*	0.852	100	0%	55	52.7%	3	33.3%	-	-	-	HMMPfam_SOCS_box
MMP9	4318	genome.wustl.edu	37	20	44639788	44639788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004994.2	+1	reviewed	p.P219Q	0.562	54	0%	15	60%	27	0%	benign(0.253)	tolerated(0.18)	neutral(0.082)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP9	4318	genome.wustl.edu	37	20	44641157	44641157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004994.2	+1	reviewed	p.M422I	1.000	94	0%	26	34.6%	34	0%	benign(0.278)	tolerated(1)	neutral(0.030)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
SLC12A5	57468	genome.wustl.edu	37	20	44681756	44681756	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001134771.1	+1	reviewed	p.R869	0.998	382	0%	74	45.9%	0	-	-	-	-	NULL
NCOA5	57727	genome.wustl.edu	37	20	44691154	44691154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020967.2	-1	reviewed	p.F509V	1.000	98	0%	37	48.6%	37	43.2%	benign(0.271)	tolerated(0.06)	neutral(0.352)	NULL
LOC100287179	100287179	genome.wustl.edu	37	20	45085164	45085164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343708.1	-1	model	p.Q14H	0.000	34	0%	36	50%	0	-	-	-	-	NULL
ZNF334	55713	genome.wustl.edu	37	20	45130119	45130119	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018102.3	-1	validated	p.R620I	1.000	164	0%	160	33.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF334	55713	genome.wustl.edu	37	20	45130452	45130452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018102.3	-1	validated	p.R509I	0.308	87	0%	76	42.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF57667
SLC13A3	64849	genome.wustl.edu	37	20	45192160	45192160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022829.4	-1	reviewed	p.L509M	0.399	63	0%	24	50%	0	-	possibly_damaging(0.925)	deleterious(0.02)	deleterious(0.756)	HMMPfam_Na_sulph_symp
SLC13A3	64849	genome.wustl.edu	37	20	45242199	45242199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022829.4	-1	reviewed	p.F93I	1.000	163	0.6%	35	45.7%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Na_sulph_symp
ZMYND8	23613	genome.wustl.edu	37	20	45865244	45865244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_183047.1	-1	reviewed	p.E848D	1.000	240	0%	73	12.3%	20	15%	benign(0.003)	tolerated(0.43)	neutral(0.013)	NULL
NCOA3	8202	genome.wustl.edu	37	20	46264326	46264326	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181659.2	+1	reviewed	p.N458T	0.007	81	0%	33	54.5%	4	75%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47628534	47628534	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006420.2	+1	reviewed	p.F1277	0.994	188	0%	57	33.3%	6	66.6%	-	-	-	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47639640	47639640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006420.2	+1	reviewed	p.L1559F	1.000	88	0%	104	47.1%	14	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSE1L	1434	genome.wustl.edu	37	20	47682748	47682748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001316.2	+1	reviewed	p.K83T	1.000	119	0%	162	50%	40	57.5%	benign(0.025)	deleterious(0.04)	neutral(0.350)	HMMPfam_IBN_N,superfamily_ARM repeat
KCNB1	3745	genome.wustl.edu	37	20	47991047	47991047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004975.2	-1	reviewed	p.F350L	1.000	46	0%	44	43.2%	0	-	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	HMMPfam_Ion_trans,superfamily_SSF81324
SLC9A8	23315	genome.wustl.edu	37	20	48456101	48456101	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015266.1	+1	validated	p.K105Q	1.000	106	0%	285	44.6%	1	0%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMPfam_Na_H_Exchanger
SPATA2	9825	genome.wustl.edu	37	20	48523206	48523206	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135773.1	-1	validated	p.V171	0.102	49	0%	30	36.7%	7	42.8%	-	-	-	NULL
FAM65C	140876	genome.wustl.edu	37	20	49214212	49214212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080829.2	-1	predicted	p.E561D	0.995	18	0%	13	53.8%	0	-	benign(0.006)	tolerated(0.07)	neutral(0.319)	NULL
NFATC2	4773	genome.wustl.edu	37	20	50048630	50048630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173091.2	-1	reviewed	p.N899S	1.000	213	0.5%	114	45.6%	2	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50244175	50244175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006045.1	-1	validated	p.K603N	1.000	131	0%	42	50%	38	39.4%	possibly_damaging(0.671)	deleterious(0.01)	deleterious(0.643)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
LOC100287405	100287405	genome.wustl.edu	37	20	50408716	50408716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343710.1	+1	model	p.M1I	1.000	67	0%	58	36.2%	0	-	-	-	-	NULL
TSHZ2	128553	genome.wustl.edu	37	20	51872193	51872193	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173485.4	+1	validated	p.S732	0.000	116	0%	35	20%	1	0%	-	-	-	NULL
ZNF217	7764	genome.wustl.edu	37	20	52193627	52193627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006526.2	-1	validated	p.R559I	1.000	128	0%	158	44.3%	14	28.5%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
CYP24A1	1591	genome.wustl.edu	37	20	52786192	52786192	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000782.4	-1	reviewed	p.L193	0.998	55	0%	86	54.7%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
MC3R	4159	genome.wustl.edu	37	20	54824208	54824208	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019888.3	+1	reviewed	p.S103	0.967	237	0%	30	53.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AURKA	6790	genome.wustl.edu	37	20	54958153	54958153	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003600.2	-1	reviewed	p.E152*	1.000	173	0%	93	40.9%	20	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
FAM209A	200232	genome.wustl.edu	37	20	55100082	55100082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012971.3	+1	validated	p.L73Q	0.029	264	0%	235	44.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CTCFL	140690	genome.wustl.edu	37	20	56073626	56073626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080618.2	-1	reviewed	p.L658I	0.932	114	0.9%	87	48.3%	0	-	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
CTCFL	140690	genome.wustl.edu	37	20	56089748	56089748	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080618.2	-1	reviewed	p.S410	0.383	74	0%	69	50.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBP1	81030	genome.wustl.edu	37	20	56185321	56185321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030776.2	-1	validated	p.S326L	0.000	226	0%	81	34.6%	1	0%	benign(0.423)	deleterious(0)	deleterious(0.582)	NULL
PHACTR3	116154	genome.wustl.edu	37	20	58342311	58342311	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080672.3	+1	reviewed	p.L204	0.999	156	0%	32	34.4%	0	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58450505	58450505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014258.2	-1	reviewed	p.R1057I	0.550	221	0%	84	15.5%	0	-	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58456029	58456029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014258.2	-1	reviewed	p.D922Y	1.000	59	0%	59	32.2%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58467177	58467177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014258.2	-1	reviewed	p.I744M	0.002	399	0%	71	43.7%	0	-	benign(0.048)	tolerated(0.08)	neutral(0.303)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58467462	58467462	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014258.2	-1	reviewed	p.K649	0.002	137	0%	49	53.1%	0	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58468615	58468615	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014258.2	-1	reviewed	p.E567*	0.149	177	0%	41	41.5%	0	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58475852	58475852	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014258.2	-1	reviewed	p.I402L	0.906	253	0%	48	33.3%	0	-	possibly_damaging(0.79)	tolerated(0.15)	deleterious(0.537)	NULL
TAF4	6874	genome.wustl.edu	37	20	60575620	60575620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003185.3	-1	reviewed	p.I882V	0.998	130	0%	147	46.3%	12	50%	possibly_damaging(0.858)	deleterious(0.02)	deleterious(0.714)	HMMPfam_TAF4,superfamily_Histone-fold
DIDO1	11083	genome.wustl.edu	37	20	61513198	61513198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033081.1	-1	reviewed	p.F1370L	0.973	16	0%	95	42.1%	15	26.6%	benign(0.034)	tolerated(0.54)	neutral(0.009)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61527945	61527945	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033081.1	-1	reviewed	p.S664	0.958	52	0%	59	61%	13	46.1%	-	-	-	superfamily_Elongation factor TFIIS domain 2
COL20A1	57642	genome.wustl.edu	37	20	61943898	61943898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020882.2	+1	validated	p.T644A	1.000	17	0%	33	42.4%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Fibronectin type III
COL20A1	57642	genome.wustl.edu	37	20	61945177	61945177	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020882.2	+1	validated	p.P764	0.000	12	0%	16	43.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SRMS	6725	genome.wustl.edu	37	20	62172603	62172603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080823.2	-1	provisional	p.V409A	1.000	7	0.000	18	0.278	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
RTEL1	51750	genome.wustl.edu	37	20	62305308	62305308	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032957.3	+1	reviewed	p.E261*	1.000	29	0%	23	34.8%	11	36.3%	-	-	-	HMMSmart_DEXDc2,HMMPfam_DEAD_2
ZGPAT	84619	genome.wustl.edu	37	20	62366717	62366717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032527.3	+1	validated	p.E420*	0.804	14	0%	28	50%	23	30.4%	-	-	-	NULL
UCKL1	54963	genome.wustl.edu	37	20	62577278	62577278	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017859.2	-1	validated	p.F154	0.970	34	0%	268	45.1%	27	22.2%	-	-	-	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYT1	4661	genome.wustl.edu	37	20	62854671	62854671	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004535.2	+1	reviewed	p.K829	1.000	160	0%	155	48.4%	0	-	-	-	-	superfamily_SSF103637
TPTE	7179	genome.wustl.edu	37	21	10920126	10920126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199261.2	-1	validated	p.K376N	0.595	496	0%	346	19.7%	0	-	benign(0.361)	tolerated(0.36)	neutral(0.135)	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE	7179	genome.wustl.edu	37	21	10920143	10920143	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199261.2	-1	validated	p.E371*	0.541	548	0%	362	22.1%	0	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE	7179	genome.wustl.edu	37	21	10933894	10933894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199261.2	-1	validated	p.D329Y	0.986	599	0%	443	21%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE	7179	genome.wustl.edu	37	21	10934966	10934966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199261.2	-1	validated	p.R276Q	0.567	575	0%	384	18.5%	0	-	benign(0.008)	tolerated(0.37)	neutral(0.019)	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE	7179	genome.wustl.edu	37	21	10959756	10959756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_199261.2	-1	validated	p.N73S	0.000	359	0%	236	21.6%	0	-	benign(0.062)	tolerated(0.06)	neutral(0.327)	superfamily_Voltage-gated potassium channels
LIPI	149998	genome.wustl.edu	37	21	15561474	15561474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198996.2	-1	validated	p.D126Y	0.966	140	0%	82	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_SSF53474
NRIP1	8204	genome.wustl.edu	37	21	16337048	16337048	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003489.3	-1	reviewed	p.E1156*	1.000	157	0%	55	45.5%	6	33.3%	-	-	-	NULL
USP25	29761	genome.wustl.edu	37	21	17163895	17163895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013396.3	+1	validated	p.R156Q	1.000	269	0.4%	70	41.4%	12	41.6%	benign(0.222)	tolerated(0.54)	neutral(0.029)	NULL
USP25	29761	genome.wustl.edu	37	21	17214843	17214843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013396.3	+1	validated	p.E774G	1.000	138	0%	41	46.3%	17	58.8%	probably_damaging(0.987)	tolerated(0.14)	deleterious(0.686)	NULL
NCAM2	4685	genome.wustl.edu	37	21	22658624	22658624	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004540.2	+1	reviewed	p.E125*	1.000	250	0%	36	47.2%	0	-	-	-	-	superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22696762	22696762	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004540.2	+1	reviewed	p.E227*	1.000	149	0%	41	46.3%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22782691	22782691	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004540.2	+1	reviewed	p.S431	0.938	54	0%	58	60.3%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22881353	22881353	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004540.2	+1	reviewed	p.L753	0.012	226	0%	36	44.4%	1	0%	-	-	-	NULL
ATP5J	522	genome.wustl.edu	37	21	27097544	27097544	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003701.1	-1	reviewed	p.K102N	0.903	140	0%	123	38.2%	382	49.2%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_ATP-synt_F6,superfamily_Mitochondrial ATP synthase coupling factor 6 (Pfam 05511)
GABPA	2551	genome.wustl.edu	37	21	27130420	27130420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002040.3	+1	validated	p.S218L	1.000	165	0%	38	18.4%	6	16.6%	benign(0.006)	deleterious(0.03)	neutral(0.364)	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
APP	351	genome.wustl.edu	37	21	27328055	27328055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000484.3	-1	reviewed	p.F491L	1.000	405	0%	101	40.6%	636	42.6%	benign(0.001)	tolerated(1)	-	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
APP	351	genome.wustl.edu	37	21	27347519	27347519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000484.3	-1	reviewed	p.S441Y	1.000	320	0.3%	54	16.7%	747	19.1%	unknown(0)	deleterious(0)	-	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
ADAMTS1	9510	genome.wustl.edu	37	21	28214230	28214230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006988.3	-1	reviewed	p.S386F	1.000	154	0%	70	42.9%	34	38.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Reprolysin,superfamily_SSF55486
ADAMTS5	11096	genome.wustl.edu	37	21	28296687	28296687	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007038.3	-1	reviewed	p.T826	0.001	173	0%	82	40.2%	0	-	-	-	-	HMMPfam_ADAM_spacer1
LTN1	26046	genome.wustl.edu	37	21	30342917	30342917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015565.2	-1	validated	p.K378Q	0.975	127	0%	82	45.1%	5	100%	possibly_damaging(0.69)	tolerated(0.6)	neutral(0.252)	superfamily_ARM repeat
RWDD2B	10069	genome.wustl.edu	37	21	30380805	30380805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016940.2	-1	validated	p.D69Y	0.590	55	0%	126	14.3%	18	11.1%	possibly_damaging(0.851)	tolerated(0.08)	deleterious(0.627)	HMMPfam_RWD,HMMSmart_RWD,superfamily_UBQ-conjugat/RWD-like
USP16	10600	genome.wustl.edu	37	21	30415769	30415769	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001032410.1	+1	reviewed	p.K402T	1.000	108	0%	83	36.1%	22	36.3%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_UCH,superfamily_Cysteine proteinases
C21orf7	56911	genome.wustl.edu	37	21	30521536	30521536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020152.2	+1	provisional	p.P133T	0.999	377	0%	278	46.4%	1	0%	benign(0.108)	deleterious(0.01)	neutral(0.414)	NULL
BACH1	571	genome.wustl.edu	37	21	30701962	30701962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001186.2	+1	reviewed	p.R575H	1.000	98	0%	72	44.4%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1
KRTAP13-3	337960	genome.wustl.edu	37	21	31797767	31797767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181622.1	-1	provisional	p.R155K	0.005	86	0%	40	37.5%	0	-	possibly_damaging(0.712)	tolerated(0.21)	neutral(0.301)	HMMPfam_PMG
KRTAP21-1	337977	genome.wustl.edu	37	21	32127479	32127479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181619.1	-1	provisional	p.R73I	1.000	272	0%	44	50%	0	-	unknown(0)	tolerated(0.21)	-	NULL
TIAM1	7074	genome.wustl.edu	37	21	32624092	32624092	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003253.2	-1	validated	p.R459	0.063	52	0%	15	53.3%	2	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
TIAM1	7074	genome.wustl.edu	37	21	32638340	32638340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003253.2	-1	validated	p.A317T	1.000	124	0%	120	48.3%	4	50%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
URB1	9875	genome.wustl.edu	37	21	33688779	33688779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014825.2	-1	validated	p.Q2211P	0.002	40	0%	20	65%	19	78.9%	benign(0.027)	deleterious(0.01)	neutral(0.407)	NULL
URB1	9875	genome.wustl.edu	37	21	33689150	33689150	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014825.2	-1	validated	p.S2087	0.000	44	0%	35	40%	12	50%	-	-	-	NULL
URB1	9875	genome.wustl.edu	37	21	33697666	33697666	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014825.2	-1	validated	p.S1665*	0.376	109	0%	69	37.7%	5	20%	-	-	-	superfamily_ARM repeat
URB1	9875	genome.wustl.edu	37	21	33747736	33747736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014825.2	-1	validated	p.N241D	1.000	249	0%	193	39.4%	1	100%	possibly_damaging(0.879)	tolerated(0.28)	neutral(0.374)	NULL
TCP10L	140290	genome.wustl.edu	37	21	33949173	33949173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144659.5	-1	validated	p.D187Y	0.006	154	0%	207	35.3%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34067417	34067417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003895.3	-1	validated	p.R219W	1.000	146	0%	84	51.2%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Syja_N
GCFC1	94104	genome.wustl.edu	37	21	34110488	34110488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016631.3	-1	reviewed	p.Q826L	1.000	126	0%	156	33.3%	23	39.1%	possibly_damaging(0.448)	tolerated(0.07)	neutral(0.466)	HMMPfam_GCFC
GCFC1	94104	genome.wustl.edu	37	21	34117207	34117207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016631.3	-1	reviewed	p.W696R	1.000	134	0%	93	45.2%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCFC
IL10RB	3588	genome.wustl.edu	37	21	34655492	34655492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000628.3	+1	reviewed	p.R198W	0.000	167	0%	195	49.2%	33	51.5%	benign(0.079)	tolerated(0.14)	neutral(0.255)	HMMSmart_FN3,superfamily_FN_III-like
IFNGR2	3460	genome.wustl.edu	37	21	34793809	34793809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005534.3	+1	reviewed	p.A77T	0.000	69	0%	55	49.1%	89	46%	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_Fibronectin type III
DNAJC28	54943	genome.wustl.edu	37	21	34860925	34860925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001040192.1	-1	validated	p.K259M	1.000	152	0%	367	43.1%	1	0%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_DUF1992
SON	6651	genome.wustl.edu	37	21	34926110	34926110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138927.1	+1	reviewed	p.E1525K	0.996	27	0%	80	47.5%	31	35.4%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
KCNE2	9992	genome.wustl.edu	37	21	35743048	35743048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_172201.1	+1	reviewed	p.D91N	0.998	154	0%	65	50.8%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ISK_Channel
RCAN1	1827	genome.wustl.edu	37	21	35895991	35895991	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004414.5	-1	reviewed	p.L90	0.999	246	0%	211	45%	10	30%	-	-	-	HMMPfam_Calcipressin
RUNX1	861	genome.wustl.edu	37	21	36421171	36421171	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001754.4	-1	reviewed	p.S9*	1.000	132	0%	52	11.5%	0	-	-	-	-	NULL
CBR3	874	genome.wustl.edu	37	21	37518377	37518377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001236.3	+1	reviewed	p.R134I	0.914	128	0%	217	45.2%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-bd
DOPEY2	9980	genome.wustl.edu	37	21	37597956	37597956	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005128.2	+1	validated	p.V488	0.128	142	0%	72	27.8%	4	0%	-	-	-	NULL
SIM2	6493	genome.wustl.edu	37	21	38072205	38072205	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005069.3	+1	reviewed	p.R53	0.997	15	0%	22	50%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353
TTC3	7267	genome.wustl.edu	37	21	38461124	38461124	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001894.1	+1	validated	p.L122	1.000	98	0%	112	43.8%	10	50%	-	-	-	NULL
TTC3	7267	genome.wustl.edu	37	21	38537934	38537934	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001894.1	+1	validated	p.E1140*	1.000	84	0%	73	56.2%	40	27.5%	-	-	-	superfamily_Spectrin,superfamily_SSF48452
KCNJ6	3763	genome.wustl.edu	37	21	38997502	38997502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002240.2	-1	reviewed	p.N411D	1.000	326	0%	238	48.3%	0	-	possibly_damaging(0.882)	tolerated(0.38)	neutral(0.362)	NULL
KCNJ15	3772	genome.wustl.edu	37	21	39672183	39672183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002243.3	+1	reviewed	p.R334W	1.000	142	0%	80	52.5%	0	-	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	HMMPfam_IRK,superfamily_Ig_E-set
ERG	2078	genome.wustl.edu	37	21	39755594	39755594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136154.1	-1	validated	p.D398N	1.000	76	0%	53	41.5%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
BRWD1	54014	genome.wustl.edu	37	21	40604373	40604373	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018963.3	-1	reviewed	p.E940*	1.000	149	0%	105	40%	6	83.3%	-	-	-	superfamily_WD40 repeat-like
LCA5L	150082	genome.wustl.edu	37	21	40800175	40800175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152505.3	-1	validated	p.R82I	0.000	102	0%	90	33.3%	0	-	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
IGSF5	150084	genome.wustl.edu	37	21	41160107	41160107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001080444.1	+1	provisional	p.Q316H	0.903	187	0%	320	42.5%	0	-	possibly_damaging(0.653)	tolerated(0.07)	deleterious(0.548)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41427707	41427707	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001389.3	-1	validated	p.I1660	0.133	335	0%	102	50%	0	-	-	-	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41539170	41539170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001389.3	-1	validated	p.S998F	0.997	66	0%	47	48.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DSCAM	1826	genome.wustl.edu	37	21	41684257	41684257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001389.3	-1	validated	p.P605T	1.000	62	0%	21	42.9%	0	-	benign(0.27)	tolerated(0.47)	neutral(0.040)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CBS	875	genome.wustl.edu	37	21	44485379	44485379	+	Missense_Mutation	SNP	G	G	A	rs139456571	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000071.2	-1	reviewed	p.R224C	1.000	52	0%	44	31.8%	16	62.5%	benign(0.331)	deleterious(0.04)	neutral(0.453)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
HSF2BP	11077	genome.wustl.edu	37	21	45076582	45076582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007031.1	-1	reviewed	p.K25Q	1.000	238	0%	341	45.7%	1	0%	possibly_damaging(0.663)	deleterious(0)	deleterious(0.679)	NULL
TRPM2	7226	genome.wustl.edu	37	21	45795895	45795895	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003307.3	+1	reviewed	p.G317	0.995	30	0%	76	42.1%	0	-	-	-	-	NULL
TSPEAR	54084	genome.wustl.edu	37	21	45941937	45941937	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144991.2	-1	provisional	p.F465	0.989	132	0%	127	44.9%	0	-	-	-	-	NULL
KRTAP10-1	386677	genome.wustl.edu	37	21	45959463	45959463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198691.2	-1	reviewed	p.P191S	0.447	229	0%	133	34.6%	0	-	unknown(0)	-	-	HMMPfam_Keratin_B2
KRTAP10-4	386672	genome.wustl.edu	37	21	45994270	45994270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198687.1	+1	reviewed	p.S212Y	0.858	293	0%	59	37.3%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Keratin_B2
COL18A1	80781	genome.wustl.edu	37	21	46893828	46893828	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130444.2	+1	reviewed	p.K639T	1.000	34	0%	33	45.5%	249	51%	unknown(0)	tolerated(0.12)	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
PCBP3	54039	genome.wustl.edu	37	21	47359959	47359959	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020528.2	+1	reviewed	p.I309L	1.000	44	0%	34	55.9%	0	-	benign(0.402)	deleterious(0)	deleterious(0.574)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FTCD	10841	genome.wustl.edu	37	21	47575403	47575403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006657.2	-1	reviewed	p.S12L	0.998	10	0%	31	38.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Formiminotransferase domain of formiminotransferase-cyclodeaminase.,HMMPfam_FTCD_N
C21orf56	84221	genome.wustl.edu	37	21	47588517	47588517	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142854.1	-1	validated	p.T83	0.000	34	0%	33	39.4%	31	0%	-	-	-	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47666262	47666262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003906.3	-1	reviewed	p.E1536K	0.866	155	0%	155	14.8%	59	11.8%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
PCNT	5116	genome.wustl.edu	37	21	47754665	47754665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006031.5	+1	reviewed	p.R208C	0.019	301	0%	140	43.6%	10	70%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
PCNT	5116	genome.wustl.edu	37	21	47783430	47783430	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006031.5	+1	reviewed	p.E730	0.001	102	0%	175	48.6%	5	60%	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47821562	47821562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006031.5	+1	reviewed	p.S1630L	0.000	36	0%	30	60%	11	45.4%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
PCNT	5116	genome.wustl.edu	37	21	47851566	47851566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006031.5	+1	reviewed	p.E2730K	0.998	35	0%	15	33.3%	22	27.2%	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	NULL
S100B	6285	genome.wustl.edu	37	21	48022235	48022235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006272.2	-1	reviewed	p.E32K	0.998	155	0%	180	42.8%	4	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_S_100,superfamily_EF-hand
POTEH	23784	genome.wustl.edu	37	22	16275231	16275231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136213.1	-1	provisional	p.V405F	0.000	205	0%	191	23%	0	-	benign(0.299)	tolerated(0.13)	neutral(0.345)	NULL
OR11H1	81061	genome.wustl.edu	37	22	16449707	16449707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005239.1	-1	provisional	p.S33Y	0.079	339	0%	133	20.3%	0	-	possibly_damaging(0.492)	deleterious(0.01)	deleterious(0.570)	superfamily_SSF81321
CECR2	27443	genome.wustl.edu	37	22	18016794	18016794	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000400573	+1	known	p.R349*	1.000	136	0.7%	59	44.1%	0	-	-	-	-	NULL
ATP6V1E1	529	genome.wustl.edu	37	22	18111375	18111375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001696.3	-1	reviewed	p.Q9H	0.940	87	0%	34	55.9%	77	44.1%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
MICAL3	57553	genome.wustl.edu	37	22	18383637	18383637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015241.2	-1	provisional	p.K273T	1.000	237	0%	223	49.8%	10	70%	probably_damaging(0.985)	tolerated(0.07)	deleterious(0.751)	superfamily_FAD/NAD(P)-binding domain
TUBA8	51807	genome.wustl.edu	37	22	18613727	18613727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018943.1	+1	provisional	p.D392N	1.000	81	0%	50	42%	6	33.3%	benign(0.003)	tolerated(0.06)	neutral(0.323)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
PRODH	5625	genome.wustl.edu	37	22	18906976	18906976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016335.3	-1	reviewed	p.Q413H	1.000	10	0%	10	50%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pro_dh,superfamily_FAD-linked oxidoreductase
SLC25A1	6576	genome.wustl.edu	37	22	19164411	19164411	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005984.2	-1	validated	p.S193	0.940	18	0%	28	28.6%	276	47.4%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
HIRA	7290	genome.wustl.edu	37	22	19343791	19343791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003325.3	-1	reviewed	p.V806G	0.995	69	0%	73	41.1%	39	33.3%	benign(0.167)	deleterious(0)	neutral(0.460)	HMMPfam_Hira
UFD1L	7353	genome.wustl.edu	37	22	19443213	19443213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005659.6	-1	reviewed	p.D253Y	1.000	60	0%	73	41.1%	142	39.4%	benign(0.008)	tolerated(0.08)	neutral(0.300)	NULL
CDC45	8318	genome.wustl.edu	37	22	19495346	19495346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003504.3	+1	reviewed	p.E338D	1.000	211	0%	122	45.1%	31	45.1%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_CDC45
MED15	51586	genome.wustl.edu	37	22	20905726	20905726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003891.1	+1	reviewed	p.E54K	0.986	266	0%	292	42.8%	23	8.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ARC105_Med_act
MED15	51586	genome.wustl.edu	37	22	20907439	20907439	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000423862	+1	known	p.E40*	1.000	276	0%	552	44%	24	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ARC105_Med_act
PI4KA	5297	genome.wustl.edu	37	22	21174123	21174123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_058004.2	-1	reviewed	p.N141D	0.999	227	0%	66	56.1%	16	37.5%	benign(0.014)	tolerated(0.81)	neutral(0.001)	NULL
AIFM3	150209	genome.wustl.edu	37	22	21331353	21331353	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144704.2	+1	validated	p.V417	0.527	139	0%	111	49.5%	0	-	-	-	-	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
P2RX6	9127	genome.wustl.edu	37	22	21380166	21380166	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005446.3	+1	reviewed	p.F321	0.656	26	0%	34	41.2%	0	-	-	-	-	HMMPfam_P2X_receptor
CCDC116	164592	genome.wustl.edu	37	22	21990876	21990876	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152612.2	+1	provisional	p.F453	0.218	33	0%	31	45.2%	0	-	-	-	-	NULL
PPIL2	23759	genome.wustl.edu	37	22	22037540	22037540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148176.2	+1	reviewed	p.D183Y	1.000	34	0%	68	35.3%	18	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPREB1	7441	genome.wustl.edu	37	22	22599405	22599405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007128.2	+1	reviewed	p.A32T	0.000	219	0%	61	9.8%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_V-set,superfamily_SSF48726
IGLV1-44	28823	genome.wustl.edu	37	22	22735509	22735509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390297	+1	known	p.G49E	0.041	209	0%	89	33.7%	15	0%	benign(0.037)	deleterious(0.04)	neutral(0.351)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV5-37	28783	genome.wustl.edu	37	22	22782105	22782105	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390300	+1	known	p.E35*	0.002	107	0%	60	53.3%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PRAME	23532	genome.wustl.edu	37	22	22890681	22890681	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006115.3	-1	reviewed	p.E446	0.888	99	0%	68	42.6%	388	50.5%	-	-	-	superfamily_RNI-like
IGLV3-22	28795	genome.wustl.edu	37	22	23047176	23047176	+	Missense_Mutation	SNP	C	C	T	rs181740395	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000390307	+1	known	p.R72W	0.000	82	0%	42	33.3%	0	-	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ENSG00000222037	0	genome.wustl.edu	37	22	23237591	23237591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000410090	+1	known	p.P122L	0.889	344	0%	85	42.4%	274	0%	possibly_damaging(0.912)	tolerated(0.27)	neutral(0.397)	HMMPfam_C1-set,superfamily_Immunoglobulin
LOC100287927	100287927	genome.wustl.edu	37	22	23248609	23248609	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343770.1	-1	model	p.E59*	1.000	248	0%	82	19.5%	545	0%	benign(0.413)	deleterious(0)	deleterious(0.578)	NULL
RGL4	266747	genome.wustl.edu	37	22	24040633	24040633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000382831	+1	known	p.C336G	0.012	21	0%	23	52.2%	0	-	-	-	-	HMMSmart_SM00147
DERL3	91319	genome.wustl.edu	37	22	24180324	24180324	+	Splice_Site	SNP	C	C	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000290730	-1	known	NULL	0.001	4	0.000	12	0.583	0	-	-	-	-	-
CABIN1	23523	genome.wustl.edu	37	22	24452763	24452763	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012295.2	+1	reviewed	p.K401T	1.000	82	0%	85	35.3%	13	15.3%	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24463004	24463004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012295.2	+1	reviewed	p.A702T	1.000	107	0%	39	61.5%	40	47.5%	possibly_damaging(0.905)	tolerated(0.48)	neutral(0.370)	superfamily_SSF48452
SPECC1L	23384	genome.wustl.edu	37	22	24717300	24717300	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145468.1	+1	validated	p.E118*	1.000	36	0%	77	42.9%	18	72.2%	-	-	-	NULL
SPECC1L	23384	genome.wustl.edu	37	22	24720239	24720239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145468.1	+1	validated	p.D664Y	1.000	83	0%	171	39.2%	20	35%	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	NULL
ADRBK2	157	genome.wustl.edu	37	22	26063737	26063737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005160.3	+1	reviewed	p.R158Q	1.000	115	0%	117	44.4%	4	25%	possibly_damaging(0.485)	tolerated(0.07)	deleterious(0.480)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
MYO18B	84700	genome.wustl.edu	37	22	26224836	26224836	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032608.5	+1	reviewed	p.A960	0.377	277	0%	95	49.5%	0	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO18B	84700	genome.wustl.edu	37	22	26422418	26422418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032608.5	+1	reviewed	p.E2160K	0.000	33	0.000	9	0.556	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26693015	26693015	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021115.4	+1	validated	p.D377	0.000	80	0%	23	26.1%	0	-	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SEZ6L	23544	genome.wustl.edu	37	22	26702091	26702091	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021115.4	+1	validated	p.L499	0.002	68	0%	25	40%	0	-	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CHEK2	11200	genome.wustl.edu	37	22	29121271	29121271	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005735.1	-1	reviewed	p.K178T	0.833	262	0%	340	53.8%	17	58.8%	benign(0.345)	tolerated(0.38)	neutral(0.127)	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain
C22orf31	25770	genome.wustl.edu	37	22	29454997	29454997	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015370.1	-1	predicted	p.T202	0.000	70	0%	65	36.9%	0	-	-	-	-	NULL
EWSR1	2130	genome.wustl.edu	37	22	29692360	29692360	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005243.3	+1	reviewed	e12+2	0.999	66	0%	57	47.4%	29	100%	-	-	-	-
EWSR1	2130	genome.wustl.edu	37	22	29693846	29693846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005243.3	+1	reviewed	p.V442I	1.000	99	0%	67	10.4%	287	0.6%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
AP1B1	162	genome.wustl.edu	37	22	29759014	29759014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127.3	-1	reviewed	p.S40L	0.998	446	0%	165	46.7%	28	42.8%	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP1B1	162	genome.wustl.edu	37	22	29759085	29759085	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127.3	-1	reviewed	p.F16	1.000	414	0%	168	28%	25	40%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
RFPL1	5988	genome.wustl.edu	37	22	29837600	29837600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021026.2	+1	validated	p.R148Q	0.000	453	0.2%	209	43.5%	0	-	probably_damaging(0.978)	tolerated(0.42)	neutral(0.434)	HMMSmart_PRY
ASCC2	84164	genome.wustl.edu	37	22	30209527	30209527	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032204.3	-1	provisional	p.L242*	0.692	220	0%	116	52.6%	22	4.5%	-	-	-	NULL
SEC14L2	23541	genome.wustl.edu	37	22	30805418	30805418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012429.2	+1	reviewed	p.L175I	1.000	122	0%	229	45.4%	7	28.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
MORC2-AS1	150291	genome.wustl.edu	37	22	31322626	31322626	+	RNA	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_026920.1	+1	validated	NULL	1.000	32	0%	15	53.3%	8	50%	-	-	-	-
SMTN	6525	genome.wustl.edu	37	22	31485788	31485788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_134270.1	+1	reviewed	p.R192Q	0.902	43	0%	31	48.4%	43	44.1%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
DRG1	4733	genome.wustl.edu	37	22	31799045	31799045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004147.3	+1	validated	p.R66Q	1.000	471	0%	386	48.7%	101	37.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
DRG1	4733	genome.wustl.edu	37	22	31816303	31816303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004147.3	+1	validated	p.K158N	1.000	235	0%	156	39.7%	115	33%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_MMR_HSR1,superfamily_P-loop containing nucleoside triphosphate hydrolases
YWHAH	7533	genome.wustl.edu	37	22	32352269	32352269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003405.3	+1	reviewed	p.K77N	1.000	218	0%	91	28.6%	155	34.8%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
RFPL3-AS1	10737	genome.wustl.edu	37	22	32756123	32756123	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_001450.2	-1	provisional	NULL	0.000	54	0%	67	56.7%	0	-	-	-	-	-
RFPL3	10738	genome.wustl.edu	37	22	32756501	32756501	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098535.1	+1	validated	p.E212	0.000	267	0.4%	179	42.5%	1	0%	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
BPIFC	254240	genome.wustl.edu	37	22	32827361	32827361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174932.2	-1	validated	p.R397I	0.780	66	0%	47	38.3%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFC	254240	genome.wustl.edu	37	22	32849408	32849408	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174932.2	-1	validated	p.E69D	0.957	173	0%	207	42.5%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
FBXO7	25793	genome.wustl.edu	37	22	32883771	32883771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012179.3	+1	reviewed	p.R276I	0.997	103	0%	79	43%	139	48.2%	possibly_damaging(0.921)	deleterious(0.01)	deleterious(0.776)	NULL
LARGE	9215	genome.wustl.edu	37	22	33679280	33679280	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004737.4	-1	reviewed	p.P595	0.016	146	0.7%	49	44.9%	55	50.9%	-	-	-	NULL
HMGXB4	10042	genome.wustl.edu	37	22	35660733	35660733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003681.2	+1	validated	p.S118P	1.000	20	0%	41	43.9%	11	72.7%	possibly_damaging(0.497)	deleterious(0)	deleterious(0.611)	NULL
APOL6	80830	genome.wustl.edu	37	22	36054737	36054737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030641.3	+1	reviewed	p.F42L	0.978	44	0%	55	43.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ApoL
APOL3	80833	genome.wustl.edu	37	22	36538073	36538073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145640.2	-1	reviewed	p.K128N	0.000	93	0%	88	47.7%	7	14.2%	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	HMMPfam_ApoL
MYH9	4627	genome.wustl.edu	37	22	36680188	36680188	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002473.4	-1	reviewed	p.T1906P	0.995	67	0%	18	38.9%	967	40.1%	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	HMMPfam_Myosin_tail_1
CACNG2	10369	genome.wustl.edu	37	22	36983540	36983540	+	Silent	SNP	G	G	A	rs148787239	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006078.2	-1	reviewed	p.Y89	1.000	192	0%	118	41.5%	0	-	-	-	-	HMMPfam_PMP22_Claudin
IFT27	11020	genome.wustl.edu	37	22	37154436	37154436	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006860.3	-1	reviewed	p.F159	0.007	121	0%	133	49.6%	76	40.7%	-	-	-	HMMPfam_Ras,superfamily_SSF52540
CSF2RB	1439	genome.wustl.edu	37	22	37325759	37325759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000395.2	+1	reviewed	p.A210T	1.000	54	0%	33	42.4%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CSF2RB	1439	genome.wustl.edu	37	22	37326849	37326849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000395.2	+1	reviewed	p.K330T	0.474	43	0%	24	41.7%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CSF2RB	1439	genome.wustl.edu	37	22	37334028	37334028	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000395.2	+1	reviewed	p.S726	0.000	49	0%	28	32.1%	4	0%	-	-	-	NULL
TMPRSS6	164656	genome.wustl.edu	37	22	37499389	37499389	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153609.2	-1	reviewed	p.E32	0.993	212	0%	28	50%	0	-	-	-	-	NULL
CYTH4	27128	genome.wustl.edu	37	22	37690748	37690748	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013385.3	+1	reviewed	p.F50	0.507	164	0%	102	47.1%	1	0%	-	-	-	NULL
CYTH4	27128	genome.wustl.edu	37	22	37705261	37705261	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000422721	+1	known	p.R287*	0.978	269	0%	89	38.2%	4	0%	-	-	-	NULL
ELFN2	114794	genome.wustl.edu	37	22	37771367	37771367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052906.3	-1	validated	p.V70M	1.000	191	0%	153	44.4%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_SSF52058
CACNA1I	8911	genome.wustl.edu	37	22	40080468	40080468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021096.3	+1	reviewed	p.R1998W	0.402	14	0%	35	45.7%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40662245	40662245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015088.2	+1	validated	p.S671G	1.000	31	0%	21	52.4%	4	50%	benign(0.258)	deleterious(0.02)	neutral(0.410)	NULL
XPNPEP3	63929	genome.wustl.edu	37	22	41320444	41320444	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022098.2	+1	validated	p.S439A	0.995	256	0%	82	48.8%	9	33.3%	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
EP300	2033	genome.wustl.edu	37	22	41513189	41513189	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001429.3	+1	reviewed	e2-2	1.000	144	0%	82	39%	2	100%	-	-	-	-
EP300	2033	genome.wustl.edu	37	22	41521884	41521884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001429.3	+1	reviewed	p.N249S	1.000	148	0%	98	52%	14	42.8%	probably_damaging(0.973)	tolerated(0.31)	neutral(0.442)	NULL
EP300	2033	genome.wustl.edu	37	22	41558739	41558739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001429.3	+1	reviewed	p.K1228N	1.000	192	0%	243	46.9%	34	35.2%	unknown(0)	deleterious(0)	-	NULL
EP300	2033	genome.wustl.edu	37	22	41562606	41562606	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001429.3	+1	reviewed	p.F1270	1.000	174	0%	313	44.1%	47	59.5%	-	-	-	NULL
POLR3H	171568	genome.wustl.edu	37	22	41939866	41939866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000432789	-1	known	p.F80L	0.000	12	0%	13	53.8%	0	-	unknown(0)	-	-	NULL
XRCC6	2547	genome.wustl.edu	37	22	42046759	42046759	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001469.3	+1	reviewed	p.K331N	0.995	198	0%	181	45.9%	334	48.2%	benign(0.124)	tolerated(0.13)	neutral(0.263)	HMMPfam_Ku,HMMSmart_Ku78,superfamily_SPOC-like
NHP2L1	4809	genome.wustl.edu	37	22	42071175	42071175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003796.1	-1	reviewed	p.I50T	1.000	151	0%	36	36.1%	351	39.8%	benign(0)	tolerated(0.37)	neutral(0.019)	HMMPfam_Ribosomal_L7Ae,superfamily_L30e-like
WBP2NL	164684	genome.wustl.edu	37	22	42418298	42418298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152613.2	+1	validated	p.S151Y	0.000	422	0%	303	39.9%	0	-	possibly_damaging(0.913)	tolerated(0.53)	neutral(0.372)	HMMPfam_WWbp
NFAM1	150372	genome.wustl.edu	37	22	42781196	42781196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145912.5	-1	reviewed	p.E262K	0.012	101	0%	90	46.7%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TTLL12	23170	genome.wustl.edu	37	22	43575962	43575962	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015140.3	-1	validated	p.F197	0.998	8	0.000	23	0.522	36	50%	-	-	-	NULL
SCUBE1	80274	genome.wustl.edu	37	22	43735183	43735183	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173050.2	-1	validated	p.I49	1.000	133	0%	79	35.4%	0	-	-	-	-	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
EFCAB6	64800	genome.wustl.edu	37	22	43976442	43976442	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022785.2	-1	validated	p.E1044*	0.010	220	0%	158	43.7%	1	0%	-	-	-	superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44073887	44073887	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022785.2	-1	validated	p.E470*	0.001	185	0%	130	42.3%	0	-	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44074010	44074010	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022785.2	-1	validated	p.R429*	0.019	207	0.5%	148	40.5%	0	-	-	-	-	superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44107417	44107417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022785.2	-1	validated	p.K323N	0.964	95	0%	45	60%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00054,superfamily_EF-hand
SULT4A1	25830	genome.wustl.edu	37	22	44234777	44234777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014351.3	-1	reviewed	p.E160*	1.000	49	0%	62	40.3%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM118A	55007	genome.wustl.edu	37	22	45728467	45728467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001104595.1	+1	validated	p.F271L	1.000	154	0%	101	39.6%	6	16.6%	possibly_damaging(0.882)	tolerated(0.65)	neutral(0.347)	NULL
SMC1B	27127	genome.wustl.edu	37	22	45779458	45779458	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148674.3	-1	validated	p.S649	1.000	172	0%	215	47.9%	1	0%	-	-	-	HMMPfam_SMC_N,superfamily_SMC_hinge,superfamily_SSF52540
SMC1B	27127	genome.wustl.edu	37	22	45792368	45792368	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_148674.3	-1	validated	e7-2	1.000	298	0%	304	46.4%	0	-	-	-	-	-
PKDREJ	10343	genome.wustl.edu	37	22	46653599	46653599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006071.1	-1	reviewed	p.H1874R	0.015	44	0%	212	40.1%	0	-	benign(0.065)	tolerated(0.11)	neutral(0.276)	HMMPfam_PKD_channel
PKDREJ	10343	genome.wustl.edu	37	22	46658014	46658014	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006071.1	-1	reviewed	p.E402	0.000	33	0%	69	44.9%	0	-	-	-	-	HMMPfam_REJ
TRMU	55687	genome.wustl.edu	37	22	46748197	46748197	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018006.4	+1	reviewed	p.E248*	1.000	67	0%	150	46%	18	16.6%	-	-	-	HMMPfam_tRNA_Me_trans
BRD1	23774	genome.wustl.edu	37	22	50216819	50216819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014577.1	-1	reviewed	p.A383T	1.000	36	0%	89	47.2%	38	47.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_PHD
ZBED4	9889	genome.wustl.edu	37	22	50279126	50279126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014838.2	+1	validated	p.R606W	0.999	31	0%	79	34.2%	9	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-BED,HMMSmart_SM00614
CRELD2	79174	genome.wustl.edu	37	22	50313429	50313429	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024324.3	+1	validated	p.F88	0.997	22	0%	66	40.9%	63	36.5%	-	-	-	NULL
MLC1	23209	genome.wustl.edu	37	22	50523212	50523212	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015166.3	-1	reviewed	p.S40	0.004	17	0%	10	60%	0	-	-	-	-	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50662994	50662994	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020461.3	-1	reviewed	p.E671*	1.000	65	0%	96	39.6%	14	21.4%	-	-	-	HMMPfam_Spc97_Spc98
FAM116B	414918	genome.wustl.edu	37	22	50757491	50757491	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000433760	-1	known	p.R12*	0.000	5	0.000	23	0.435	1	0%	unknown(0)	-	-	HMMPfam_DUF1630
NCAPH2	29781	genome.wustl.edu	37	22	50956232	50956232	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000496227	+1	known	p.A79T	0.000	30	0%	71	40.8%	87	52.8%	-	-	-	HMMPfam_DUF1032
CHKB	1120	genome.wustl.edu	37	22	51019966	51019966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005198.4	-1	reviewed	p.T155N	0.957	11	0%	53	52.8%	19	42.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
ASMTL	8623	genome.wustl.edu	37	X	1536926	1536926	+	Missense_Mutation	SNP	C	C	T	rs5989854		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004192.3	-1	reviewed	p.E488K	0.991	219	0%	72	41.7%	29	51.7%	benign(0.022)	tolerated(0.29)	neutral(0.030)	HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ASMTL	8623	genome.wustl.edu	37	X	1544548	1544548	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004192.3	-1	reviewed	p.F310	0.996	24	0%	138	39.9%	17	35.2%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
P2RY8	286530	genome.wustl.edu	37	X	1585234	1585234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_178129.4	-1	reviewed	p.A73V	0.832	62	0%	68	32.4%	0	-	benign(0.019)	tolerated(0.88)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
ARSE	415	genome.wustl.edu	37	X	2853104	2853104	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000047.2	-1	reviewed	p.L513	0.777	189	0%	135	54.1%	56	37.5%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSE	415	genome.wustl.edu	37	X	2876411	2876411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000047.2	-1	reviewed	p.S30F	0.000	236	0%	79	45.6%	32	28.1%	possibly_damaging(0.776)	tolerated(0.16)	neutral(0.349)	NULL
ARSH	347527	genome.wustl.edu	37	X	2936644	2936644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011719.1	+1	validated	p.K278N	0.021	298	0%	325	41.8%	0	-	benign(0.003)	tolerated(0.34)	neutral(0.023)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
MXRA5	25878	genome.wustl.edu	37	X	3229627	3229627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015419.3	-1	reviewed	p.L2206P	0.143	35	0%	30	46.7%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3235779	3235779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015419.3	-1	reviewed	p.Q1981H	0.022	58	0%	40	50%	3	66.6%	benign(0.156)	tolerated(0.35)	neutral(0.035)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3239121	3239121	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015419.3	-1	reviewed	p.G1535	0.000	586	0%	309	49.2%	3	0%	-	-	-	NULL
MXRA5	25878	genome.wustl.edu	37	X	3240130	3240130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015419.3	-1	reviewed	p.S1199Y	0.000	289	0%	157	45.2%	2	0%	benign(0.156)	deleterious(0.01)	neutral(0.420)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3241518	3241518	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015419.3	-1	reviewed	p.K736N	0.002	212	0%	128	53.9%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LOC100128355	100128355	genome.wustl.edu	37	X	3635437	3635437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343797.1	+1	model	p.S151Y	1.000	7	0.000	21	0.429	0	-	-	-	-	NULL
NLGN4X	57502	genome.wustl.edu	37	X	5811131	5811131	+	Silent	SNP	G	G	A	rs187221748	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020742.2	-1	reviewed	p.N726	0.980	578	0.2%	172	48.3%	0	-	-	-	-	NULL
NLGN4X	57502	genome.wustl.edu	37	X	5811430	5811430	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020742.2	-1	reviewed	p.R627*	0.966	747	0%	191	42.9%	1	0%	-	-	-	NULL
KAL1	3730	genome.wustl.edu	37	X	8504977	8504977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000216.2	-1	reviewed	p.Y486D	0.998	232	0%	108	42.6%	0	-	possibly_damaging(0.93)	tolerated(0.24)	neutral(0.414)	HMMSmart_FN3
KAL1	3730	genome.wustl.edu	37	X	8536293	8536293	+	Missense_Mutation	SNP	G	G	A	rs137852517	byCluster;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000216.2	-1	reviewed	p.S396L	0.007	408	0%	55	52.7%	0	-	benign(0.028)	deleterious(0)	neutral(0.446)	NULL
KAL1	3730	genome.wustl.edu	37	X	8565127	8565127	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000216.2	-1	reviewed	p.C163	0.832	151	0%	32	31.2%	1	0%	-	-	-	HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,PatternScan_4_DISULFIDE_CORE
FAM9A	171482	genome.wustl.edu	37	X	8763131	8763131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174951.3	-1	validated	p.E273D	0.005	216	0.5%	176	43.8%	0	-	unknown(0)	-	-	NULL
FAM9A	171482	genome.wustl.edu	37	X	8763272	8763272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174951.3	-1	validated	p.E226D	0.047	277	0%	212	40.6%	0	-	unknown(0)	-	-	NULL
FAM9A	171482	genome.wustl.edu	37	X	8763412	8763412	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174951.3	-1	validated	p.E180*	0.001	477	0%	334	43.7%	0	-	-	-	-	NULL
FAM9B	171483	genome.wustl.edu	37	X	8995941	8995941	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_205849.2	-1	validated	p.E154*	0.001	724	0%	300	45.3%	1	0%	-	-	-	HMMPfam_Cor1
TBL1X	6907	genome.wustl.edu	37	X	9656302	9656302	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001139466.1	+1	reviewed	p.R201	1.000	41	0%	62	43.5%	17	76.4%	-	-	-	NULL
SHROOM2	357	genome.wustl.edu	37	X	9859061	9859061	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001649.2	+1	reviewed	p.K121T	1.000	96	0%	33	27.3%	5	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SHROOM2	357	genome.wustl.edu	37	X	9866272	9866272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001649.2	+1	reviewed	p.E945K	0.012	12	0%	11	54.5%	7	71.4%	probably_damaging(0.989)	tolerated(0.83)	neutral(0.440)	NULL
WWC3	55841	genome.wustl.edu	37	X	10047819	10047819	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015691.3	+1	validated	p.E118*	1.000	227	0%	129	51.9%	0	-	-	-	-	NULL
WWC3	55841	genome.wustl.edu	37	X	10085340	10085340	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015691.3	+1	validated	p.D414V	0.996	34	0%	16	43.8%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
WWC3	55841	genome.wustl.edu	37	X	10093120	10093120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015691.3	+1	validated	p.A628V	0.005	50	0%	12	58.3%	1	100%	benign(0.134)	tolerated(0.28)	neutral(0.043)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ARHGAP6	395	genome.wustl.edu	37	X	11162267	11162267	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013427.2	-1	reviewed	p.D670V	1.000	94	0%	42	14.3%	2	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11166831	11166831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000380732	-1	known	p.S671Y	1.000	97	0%	19	57.9%	0	-	benign(0.135)	deleterious(0.03)	neutral(0.376)	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11204425	11204425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013427.2	-1	reviewed	p.S402C	1.000	193	0%	62	43.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11206963	11206963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013427.2	-1	reviewed	p.K321T	1.000	442	0%	70	42.9%	0	-	possibly_damaging(0.643)	tolerated(0.1)	deleterious(0.512)	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11215098	11215098	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013427.2	-1	reviewed	p.K256T	1.000	549	0%	350	45.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRMPD4	9758	genome.wustl.edu	37	X	12692997	12692997	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014728.3	+1	reviewed	p.S146	1.000	627	0.2%	168	47%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
FRMPD4	9758	genome.wustl.edu	37	X	12736395	12736395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014728.3	+1	reviewed	p.F1150L	0.510	107	0%	79	38%	0	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
PRPS2	5634	genome.wustl.edu	37	X	12828325	12828325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000489404	+1	known	p.R197Q	0.000	74	0%	72	41.7%	1	0%	unknown(0)	-	-	NULL
TLR8	51311	genome.wustl.edu	37	X	12937523	12937523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138636.4	+1	reviewed	p.L122I	0.208	125	0%	41	41.5%	0	-	possibly_damaging(0.719)	tolerated(0.24)	neutral(0.298)	superfamily_SSF52047
TLR8	51311	genome.wustl.edu	37	X	12938993	12938993	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138636.4	+1	reviewed	p.E612*	0.974	49	0%	28	39.3%	1	0%	-	-	-	superfamily_SSF52058
FAM9C	171484	genome.wustl.edu	37	X	13056593	13056593	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174901.5	-1	validated	p.W156*	0.008	538	0%	175	48.6%	0	-	-	-	-	NULL
ATXN3L	92552	genome.wustl.edu	37	X	13337039	13337039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135995.1	-1	validated	p.D339N	0.001	205	0%	109	46.8%	0	-	benign(0.026)	tolerated(0.88)	neutral(0.001)	NULL
ATXN3L	92552	genome.wustl.edu	37	X	13337217	13337217	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135995.1	-1	validated	p.P279	0.004	277	0%	143	46.2%	0	-	-	-	-	NULL
ATXN3L	92552	genome.wustl.edu	37	X	13338020	13338020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001135995.1	-1	validated	p.F12L	0.714	101	0%	71	32.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Josephin
EGFL6	25975	genome.wustl.edu	37	X	13624596	13624596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015507.3	+1	reviewed	p.E207K	0.999	252	0%	114	31.6%	2	0%	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Growth factor receptor domain,HMMPfam_EGF_CA
TCEANC	170082	genome.wustl.edu	37	X	13680768	13680768	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152634.2	+1	validated	p.D77	0.981	116	0%	81	35.8%	4	50%	-	-	-	HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70
TCEANC	170082	genome.wustl.edu	37	X	13680992	13680992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152634.2	+1	validated	p.S152Y	0.000	55	0%	44	18.2%	2	0%	possibly_damaging(0.931)	deleterious(0.04)	deleterious(0.726)	NULL
RAB9A	9367	genome.wustl.edu	37	X	13727374	13727374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004251.3	+1	provisional	p.R170Q	1.000	80	0%	32	37.5%	104	25%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
OFD1	8481	genome.wustl.edu	37	X	13757139	13757139	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003611.2	+1	reviewed	p.E134*	0.997	50	0%	119	39.5%	11	0%	-	-	-	NULL
GPM6B	2824	genome.wustl.edu	37	X	13801612	13801612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001995.1	-1	reviewed	p.G133*	1.000	179	0%	137	38.7%	20	0%	-	-	-	HMMPfam_Myelin_PLP
GLRA2	2742	genome.wustl.edu	37	X	14599498	14599498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001118885.1	+1	reviewed	p.S155L	1.000	237	0%	65	38.5%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
FANCB	2187	genome.wustl.edu	37	X	14882852	14882852	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001018113.1	-1	reviewed	p.R261*	0.009	158	0%	89	44.9%	5	0%	-	-	-	NULL
FANCB	2187	genome.wustl.edu	37	X	14883283	14883283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001018113.1	-1	reviewed	p.K117T	0.014	53	0%	86	37.2%	2	100%	probably_damaging(0.961)	tolerated(0.38)	neutral(0.422)	NULL
ASB11	140456	genome.wustl.edu	37	X	15307633	15307633	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080873.1	-1	reviewed	p.L216	0.989	62	0%	33	63.6%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ASB11	140456	genome.wustl.edu	37	X	15315763	15315763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080873.1	-1	reviewed	p.S101Y	1.000	78	0%	48	41.7%	0	-	possibly_damaging(0.684)	deleterious(0)	deleterious(0.689)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ASB11	140456	genome.wustl.edu	37	X	15333676	15333676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080873.1	-1	reviewed	p.F18L	1.000	96	0%	135	50.4%	0	-	possibly_damaging(0.836)	tolerated(1)	neutral(0.320)	NULL
PIR	8544	genome.wustl.edu	37	X	15474093	15474093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001018109.1	-1	reviewed	p.L120V	1.000	148	0%	82	50%	49	97.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RmlC_like_cupin
BMX	660	genome.wustl.edu	37	X	15527469	15527469	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001721.6	+1	reviewed	p.K52N	0.999	184	0%	96	53.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
BMX	660	genome.wustl.edu	37	X	15549482	15549482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001721.6	+1	reviewed	p.S324L	1.000	343	0%	91	49.5%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
ACE2	59272	genome.wustl.edu	37	X	15584441	15584441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021804.2	-1	reviewed	p.F683L	0.172	340	0%	103	44.7%	0	-	benign(0.035)	tolerated(0.08)	neutral(0.302)	NULL
ACE2	59272	genome.wustl.edu	37	X	15610400	15610400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021804.2	-1	reviewed	p.K131Q	0.978	263	0%	147	42.2%	0	-	benign(0.003)	deleterious(0.05)	neutral(0.345)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZRSR2	8233	genome.wustl.edu	37	X	15840883	15840883	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005089.3	+1	reviewed	p.G323*	1.000	96	1%	60	41.7%	26	46.1%	-	-	-	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
GRPR	2925	genome.wustl.edu	37	X	16168646	16168646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005314.2	+1	reviewed	p.S211Y	1.000	492	0%	125	49.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CTPS2	56474	genome.wustl.edu	37	X	16717110	16717110	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144002.1	-1	reviewed	p.G91	0.995	130	0%	178	47.8%	15	0%	-	-	-	HMMPfam_CTP_synth_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
RBBP7	5931	genome.wustl.edu	37	X	16871929	16871929	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002893.3	-1	reviewed	p.E212*	1.000	252	0%	154	40.3%	203	0.4%	-	-	-	superfamily_WD40 repeat-like
RAI2	10742	genome.wustl.edu	37	X	17818545	17818545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021785.4	-1	reviewed	p.R529I	1.000	207	0%	305	51.8%	40	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RAI2	10742	genome.wustl.edu	37	X	17818977	17818977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021785.4	-1	reviewed	p.S385Y	0.992	88	0%	48	52.1%	67	100%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
RAI2	10742	genome.wustl.edu	37	X	17819857	17819857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021785.4	-1	reviewed	p.I92V	1.000	174	0%	31	51.6%	62	96.7%	unknown(0)	tolerated(0.21)	-	NULL
BEND2	139105	genome.wustl.edu	37	X	18213474	18213474	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153346.4	-1	validated	p.S374	0.001	315	0%	256	36.3%	0	-	-	-	-	NULL
BEND2	139105	genome.wustl.edu	37	X	18221624	18221624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153346.4	-1	validated	p.L302V	0.011	175	0%	62	46.8%	0	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
SCML2	10389	genome.wustl.edu	37	X	18343049	18343049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006089.2	-1	validated	p.A47D	1.000	124	0%	100	11%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
CDKL5	6792	genome.wustl.edu	37	X	18622315	18622315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037343.1	+1	reviewed	p.K424T	1.000	192	0%	72	30.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18668532	18668532	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037343.1	+1	reviewed	p.E934*	0.000	120	0%	65	38.5%	0	-	-	-	-	NULL
PPEF1	5475	genome.wustl.edu	37	X	18748384	18748384	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006240.2	+1	reviewed	p.I44	1.000	343	0%	105	43.8%	0	-	-	-	-	NULL
PPEF1	5475	genome.wustl.edu	37	X	18807246	18807246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006240.2	+1	reviewed	p.S307Y	1.000	330	0%	138	41.3%	0	-	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
GPR64	10149	genome.wustl.edu	37	X	19017277	19017277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079858.2	-1	validated	p.K817N	1.000	143	0%	134	41%	0	-	benign(0.344)	tolerated(0.15)	neutral(0.349)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
GPR64	10149	genome.wustl.edu	37	X	19017287	19017287	+	Missense_Mutation	SNP	C	C	T	rs184370776	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079858.2	-1	validated	p.R814Q	1.000	131	0%	131	50.4%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
GPR64	10149	genome.wustl.edu	37	X	19026200	19026200	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079858.2	-1	validated	p.T488	0.000	115	0%	104	45.2%	1	100%	-	-	-	NULL
GPR64	10149	genome.wustl.edu	37	X	19031901	19031901	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001079858.2	-1	validated	p.V334	0.000	130	0%	72	50%	0	-	-	-	-	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19380892	19380892	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001671.3	-1	validated	p.E690*	1.000	139	0%	272	34.2%	1	0%	-	-	-	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19392701	19392701	+	Silent	SNP	G	G	A	rs185966397	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001671.3	-1	validated	p.F364	1.000	283	0%	89	42.7%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAP3K15	389840	genome.wustl.edu	37	X	19410218	19410218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001001671.3	-1	validated	p.N253T	1.000	178	0%	58	44.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
MAP7D2	256714	genome.wustl.edu	37	X	20028927	20028927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152780.3	-1	validated	p.F731L	1.000	163	0.6%	116	48.3%	1	100%	benign(0.409)	tolerated(0.08)	neutral(0.432)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20030576	20030576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152780.3	-1	validated	p.F614V	0.994	311	0%	91	39.6%	3	33.3%	benign(0.311)	deleterious(0)	deleterious(0.541)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20034397	20034397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152780.3	-1	validated	p.R446C	0.011	487	0%	252	44.8%	3	33.3%	unknown(0)	deleterious(0)	-	HMMPfam_MAP7
RPS6KA3	6197	genome.wustl.edu	37	X	20204442	20204442	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004586.2	-1	reviewed	p.R273*	1.000	349	0%	175	46.9%	1	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPS6KA3	6197	genome.wustl.edu	37	X	20227435	20227435	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004586.2	-1	reviewed	p.K72Q	1.000	653	0%	160	43.1%	0	-	benign(0.254)	deleterious(0.01)	neutral(0.432)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CNKSR2	22866	genome.wustl.edu	37	X	21544998	21544998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014927.3	+1	reviewed	p.R324I	1.000	248	0%	14	50%	0	-	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
SMS	6611	genome.wustl.edu	37	X	21990627	21990627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004595.2	+1	reviewed	p.I89M	0.992	151	0%	110	40.9%	212	0%	benign(0.064)	tolerated(0.06)	neutral(0.327)	NULL
PHEX	5251	genome.wustl.edu	37	X	22065220	22065220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000444.4	+1	reviewed	p.F80L	1.000	472	0%	219	38.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
PHEX	5251	genome.wustl.edu	37	X	22245665	22245665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000444.4	+1	reviewed	p.E669D	0.996	245	0%	81	29.6%	0	-	probably_damaging(0.958)	tolerated(0.06)	deleterious(0.724)	HMMPfam_Peptidase_M13,superfamily_SSF55486
ZNF645	158506	genome.wustl.edu	37	X	22291473	22291473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152577.2	+1	provisional	p.R122I	0.414	96	0%	38	36.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_ZnF_C2H2
ZNF645	158506	genome.wustl.edu	37	X	22291568	22291568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152577.2	+1	provisional	p.R154C	0.000	123	0%	33	36.4%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
DDX53	168400	genome.wustl.edu	37	X	23019024	23019024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182699.2	+1	validated	p.L284I	0.891	107	0%	89	38.2%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
DDX53	168400	genome.wustl.edu	37	X	23019983	23019983	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182699.2	+1	validated	p.Q603H	0.007	78	0%	76	42.1%	0	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	superfamily_SSF52540
ENSG00000249566	0	genome.wustl.edu	37	X	23093964	23093964	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000508288	-1	novel	NULL	0.997	152	0%	168	42.9%	49	0%	-	-	-	-
SAT1	6303	genome.wustl.edu	37	X	23803448	23803448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002970.2	+1	reviewed	p.H69R	0.999	417	0%	408	52.7%	378	83%	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
CXorf58	254158	genome.wustl.edu	37	X	23953447	23953447	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152761.2	+1	validated	p.I230	0.702	120	0%	98	44.9%	0	-	-	-	-	NULL
KLHL15	80311	genome.wustl.edu	37	X	24006939	24006939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030624.2	-1	reviewed	p.R305I	1.000	94	0%	94	43.6%	3	0%	benign(0.202)	deleterious(0.03)	neutral(0.384)	superfamily_Gal_oxid_central
KLHL15	80311	genome.wustl.edu	37	X	24024677	24024677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_030624.2	-1	reviewed	p.H45R	1.000	224	0%	73	37%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
FAM48B2	170067	genome.wustl.edu	37	X	24330937	24330937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136233.1	-1	provisional	p.L166I	1.000	246	0%	230	44.8%	0	-	-	-	-	NULL
FAM48B1	100130302	genome.wustl.edu	37	X	24383318	24383318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136234.1	+1	inferred	p.Q814R	0.000	74	0%	38	31.6%	0	-	-	-	-	NULL
PDK3	5165	genome.wustl.edu	37	X	24545733	24545733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142386.2	+1	reviewed	p.E265K	1.000	244	0%	170	36.5%	19	0%	benign(0.029)	tolerated(0.42)	neutral(0.015)	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
POLA1	5422	genome.wustl.edu	37	X	24721418	24721418	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016937.3	+1	reviewed	p.S67	0.001	171	0%	123	46.3%	10	0%	-	-	-	NULL
POLA1	5422	genome.wustl.edu	37	X	24732735	24732735	+	Silent	SNP	G	G	A	rs187670867	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016937.3	+1	reviewed	p.P131	0.963	79	0%	157	43.3%	7	100%	-	-	-	NULL
DCAF8L1	139425	genome.wustl.edu	37	X	27998898	27998898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001017930.1	-1	reviewed	p.R185H	0.998	117	0%	45	53.3%	0	-	possibly_damaging(0.661)	deleterious(0)	deleterious(0.678)	HMMSmart_WD40,superfamily_WD40_like
TAB3	257397	genome.wustl.edu	37	X	30849645	30849645	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152787.3	-1	reviewed	p.E680*	1.000	272	0%	89	47.2%	8	0%	-	-	-	NULL
TAB3	257397	genome.wustl.edu	37	X	30873360	30873360	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152787.3	-1	reviewed	p.F141C	1.000	232	0%	59	44.1%	3	0%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
DMD	1756	genome.wustl.edu	37	X	31201001	31201001	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000465285	-1	known	p.R1005*	0.411	168	0%	29	48.3%	0	-	-	-	-	HMMPfam_efhand_2,superfamily_EF-hand
DMD	1756	genome.wustl.edu	37	X	32235099	32235099	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004006.2	-1	reviewed	p.E2124	1.000	211	0%	37	10.8%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32364164	32364164	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004006.2	-1	reviewed	p.L1828	1.000	265	0%	73	38.4%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32613950	32613950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004006.2	-1	reviewed	p.S509Y	1.000	384	0.5%	138	60.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32867891	32867891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004006.2	-1	reviewed	p.G47V	1.000	187	0%	55	47.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
FAM47A	158724	genome.wustl.edu	37	X	34148689	34148689	+	Missense_Mutation	SNP	G	G	T	rs191524414	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203408.3	-1	validated	p.F569L	0.004	325	0%	195	17.9%	0	-	possibly_damaging(0.484)	tolerated(0.66)	neutral(0.163)	NULL
FAM47A	158724	genome.wustl.edu	37	X	34149288	34149288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_203408.3	-1	validated	p.R370C	0.004	110	0%	37	35.1%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34961381	34961381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152631.2	+1	validated	p.L145F	0.173	186	0%	88	52.3%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962508	34962508	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152631.2	+1	validated	p.V520	0.001	236	0%	145	37.9%	0	-	-	-	-	NULL
CXorf22	170063	genome.wustl.edu	37	X	35970050	35970050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152632.3	+1	validated	p.K339M	0.997	147	0%	38	47.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CXorf22	170063	genome.wustl.edu	37	X	36007545	36007545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152632.3	+1	validated	p.L941F	0.000	322	0%	185	40%	0	-	possibly_damaging(0.459)	tolerated(0.14)	neutral(0.400)	NULL
CXorf59	286464	genome.wustl.edu	37	X	36122751	36122751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173695.2	+1	validated	p.W330R	1.000	265	0%	45	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calponin-homology
CXorf59	286464	genome.wustl.edu	37	X	36162889	36162889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173695.2	+1	validated	p.R491M	0.005	162	0%	42	40.5%	1	0%	unknown(0)	-	-	NULL
CXorf30	645090	genome.wustl.edu	37	X	36317140	36317140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098843.3	+1	validated	p.L25I	0.000	231	0%	69	27.5%	0	-	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
CXorf30	645090	genome.wustl.edu	37	X	36319284	36319284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001098843.3	+1	validated	p.D100N	1.000	146	0%	78	35.9%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
FAM47C	442444	genome.wustl.edu	37	X	37026589	37026589	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013736.2	+1	validated	p.R36	0.011	147	0%	77	51.9%	0	-	-	-	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37027003	37027003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013736.2	+1	validated	p.E174K	0.000	91	0%	79	44.3%	0	-	possibly_damaging(0.672)	tolerated(0.25)	neutral(0.275)	NULL
FAM47C	442444	genome.wustl.edu	37	X	37028109	37028109	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013736.2	+1	validated	p.S542	0.001	161	0%	73	42.5%	0	-	-	-	-	NULL
CYBB	1536	genome.wustl.edu	37	X	37641412	37641412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000397.3	+1	reviewed	p.F39L	0.002	522	0%	89	40.4%	2	0%	benign(0.133)	tolerated(0.27)	neutral(0.044)	NULL
CYBB	1536	genome.wustl.edu	37	X	37658233	37658233	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000397.3	+1	reviewed	p.E234*	0.000	205	0%	27	44.4%	0	-	-	-	-	NULL
SRPX	8406	genome.wustl.edu	37	X	38019361	38019361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006307.4	-1	validated	p.F288L	1.000	165	0%	45	51.1%	1	0%	possibly_damaging(0.829)	deleterious(0.01)	deleterious(0.720)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
RPGR	6103	genome.wustl.edu	37	X	38145282	38145282	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001034853.1	-1	reviewed	p.G990	0.012	16	0%	34	44.1%	0	-	-	-	-	NULL
OTC	5009	genome.wustl.edu	37	X	38260657	38260657	+	Silent	SNP	C	C	T	rs72556280		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000531.5	+1	reviewed	p.I172	1.000	358	0%	119	45.4%	0	-	-	-	-	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace_N
BCOR	54880	genome.wustl.edu	37	X	39911598	39911598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001123385.1	-1	reviewed	p.R1678C	0.998	56	0%	60	41.7%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCOR	54880	genome.wustl.edu	37	X	39932570	39932570	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001123385.1	-1	reviewed	p.G677*	1.000	47	0%	85	37.6%	15	0%	-	-	-	NULL
CXorf38	159013	genome.wustl.edu	37	X	40506329	40506329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144970.2	-1	validated	p.R94I	1.000	54	0%	19	47.4%	11	9%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
MED14	9282	genome.wustl.edu	37	X	40523564	40523564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004229.3	-1	reviewed	p.G1148E	1.000	282	0%	61	45.9%	34	0%	possibly_damaging(0.796)	tolerated(0.28)	neutral(0.331)	NULL
MED14	9282	genome.wustl.edu	37	X	40547716	40547716	+	Missense_Mutation	SNP	G	G	A	rs182643914	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004229.3	-1	reviewed	p.R683C	1.000	122	0%	39	43.6%	10	90%	benign(0.026)	deleterious(0.04)	neutral(0.350)	NULL
MED14	9282	genome.wustl.edu	37	X	40568616	40568616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004229.3	-1	reviewed	p.F423L	1.000	104	0%	48	12.5%	10	30%	benign(0.007)	tolerated(0.4)	neutral(0.016)	NULL
MED14	9282	genome.wustl.edu	37	X	40568693	40568693	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004229.3	-1	reviewed	p.E398*	1.000	136	0%	45	37.8%	11	9%	-	-	-	NULL
MED14	9282	genome.wustl.edu	37	X	40570550	40570550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004229.3	-1	reviewed	p.S298Y	1.000	156	0%	73	45.2%	8	100%	benign(0.007)	tolerated(0.93)	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41055531	41055531	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039590.2	+1	reviewed	p.Q1335	0.995	434	0%	182	41.2%	27	29.6%	unknown(0)	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41075904	41075904	+	Silent	SNP	C	C	T	rs146661515	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039590.2	+1	reviewed	p.P2028	1.000	34	0%	49	40.8%	43	9.3%	-	-	-	NULL
DDX3X	1654	genome.wustl.edu	37	X	41202549	41202549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001356.3	+1	reviewed	p.K208N	1.000	218	0%	142	50.7%	171	56.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX3X	1654	genome.wustl.edu	37	X	41204491	41204491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001356.3	+1	reviewed	p.R362C	0.998	354	0%	229	43.7%	286	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CASK	8573	genome.wustl.edu	37	X	41519788	41519788	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003688.3	-1	reviewed	p.I245	1.000	384	0%	72	36.1%	20	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CASK	8573	genome.wustl.edu	37	X	41646534	41646534	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003688.3	-1	reviewed	p.L59	1.000	242	0%	152	44.7%	11	81.8%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAOA	4128	genome.wustl.edu	37	X	43542759	43542759	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000240.2	+1	reviewed	e2-2	0.994	609	0%	331	43.2%	0	-	-	-	-	-
MAOB	4129	genome.wustl.edu	37	X	43655003	43655003	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000898.4	-1	reviewed	p.N251H	0.998	328	0%	89	37.1%	5	0%	benign(0.013)	deleterious(0.01)	neutral(0.406)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
MAOB	4129	genome.wustl.edu	37	X	43655067	43655067	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000898.4	-1	reviewed	p.V229	1.000	332	0%	72	59.7%	4	0%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
EFHC2	80258	genome.wustl.edu	37	X	44171909	44171909	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000333807	-1	known	p.E46*	1.000	332	0%	199	46.2%	1	0%	-	-	-	NULL
FUNDC1	139341	genome.wustl.edu	37	X	44401345	44401345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173794.3	-1	validated	p.Y11D	0.975	156	0%	130	45.4%	22	95.4%	benign(0.014)	tolerated(0.64)	neutral(0.004)	NULL
DUSP21	63904	genome.wustl.edu	37	X	44703567	44703567	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022076.3	+1	reviewed	p.F63	0.005	375	0%	104	49%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_DSPc,superfamily_SSF52799
KDM6A	7403	genome.wustl.edu	37	X	44820603	44820603	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021140.2	+1	reviewed	p.G100	1.000	487	0.2%	296	43.6%	4	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CXorf36	79742	genome.wustl.edu	37	X	45059856	45059856	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_176819.3	-1	validated	p.F72	1.000	154	0%	90	52.2%	2	0%	-	-	-	NULL
ZNF674	641339	genome.wustl.edu	37	X	46359975	46359975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001039891.2	-1	validated	p.R350I	0.018	259	0%	164	11.6%	1	0%	possibly_damaging(0.578)	deleterious(0.04)	deleterious(0.547)	NULL
CHST7	56548	genome.wustl.edu	37	X	46433807	46433807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019886.2	+1	reviewed	p.E147D	1.000	35	0%	17	47.1%	0	-	possibly_damaging(0.797)	tolerated(0.52)	neutral(0.308)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
SLC9A7	84679	genome.wustl.edu	37	X	46539181	46539181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032591.1	-1	reviewed	p.D179N	1.000	82	0%	66	39.4%	3	100%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Na_H_Exchanger
UBA1	7317	genome.wustl.edu	37	X	47069480	47069480	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003334.3	+1	reviewed	p.S719	0.857	115	0%	34	52.9%	349	73.6%	-	-	-	superfamily_MoeB
USP11	8237	genome.wustl.edu	37	X	47092434	47092434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004651.3	+1	reviewed	p.R41W	0.004	51	0%	12	75%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZNF157	7712	genome.wustl.edu	37	X	47271933	47271933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003446.3	+1	reviewed	p.R154I	0.004	211	0%	105	49.5%	0	-	possibly_damaging(0.893)	tolerated(0.14)	deleterious(0.601)	superfamily_SSF57667
ZNF157	7712	genome.wustl.edu	37	X	47271951	47271951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003446.3	+1	reviewed	p.K160T	0.989	181	0%	106	36.8%	1	0%	benign(0.063)	deleterious(0.01)	neutral(0.410)	superfamily_SSF57667
ARAF	369	genome.wustl.edu	37	X	47422455	47422455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001654.3	+1	reviewed	p.R30H	1.000	85	0%	59	50.8%	18	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RBD,HMMSmart_RBD,superfamily_SSF54236
SYN1	6853	genome.wustl.edu	37	X	47435985	47435985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006950.3	-1	reviewed	p.T298A	1.000	402	0%	85	34.1%	0	-	possibly_damaging(0.943)	tolerated(0.42)	neutral(0.402)	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
SYN1	6853	genome.wustl.edu	37	X	47464776	47464776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006950.3	-1	reviewed	p.S177Y	1.000	85	0%	53	35.8%	0	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_Synapsin,superfamily_PreATP-grasp domain
SYN1	6853	genome.wustl.edu	37	X	47466585	47466585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006950.3	-1	reviewed	p.F130L	1.000	199	0%	462	42.6%	0	-	probably_damaging(0.964)	deleterious(0.05)	deleterious(0.752)	HMMPfam_Synapsin,superfamily_PreATP-grasp domain
ZNF630	57232	genome.wustl.edu	37	X	47918311	47918311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037735.2	-1	validated	p.R507I	1.000	192	0%	130	46.2%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47919548	47919548	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001037735.2	-1	validated	p.E95*	0.983	82	0%	82	50%	1	100%	-	-	-	NULL
SSX5	6758	genome.wustl.edu	37	X	48049671	48049671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021015.3	-1	reviewed	p.D163Y	0.000	399	0%	211	45.5%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
SSX1	6756	genome.wustl.edu	37	X	48117269	48117269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005635.2	+1	reviewed	p.R53I	0.672	593	0%	465	37.8%	0	-	benign(0.01)	deleterious(0.02)	neutral(0.384)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
EBP	10682	genome.wustl.edu	37	X	48382228	48382228	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006579.2	+1	reviewed	p.P23	0.995	295	0%	81	42%	84	94%	-	-	-	NULL
TBC1D25	4943	genome.wustl.edu	37	X	48419066	48419066	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002536.2	+1	validated	p.P590	0.000	78	0%	61	47.5%	12	0%	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D25	4943	genome.wustl.edu	37	X	48419185	48419185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002536.2	+1	validated	p.R630H	0.999	62	0%	49	49%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ypt/Rab-GAP domain of gyp1p
WAS	7454	genome.wustl.edu	37	X	48542781	48542781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000377.2	+1	reviewed	p.K81T	1.000	116	0%	74	35.1%	7	0%	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729
SUV39H1	6839	genome.wustl.edu	37	X	48565968	48565968	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000337852	+1	known	p.*390Y	0.799	149	0%	31	35.5%	15	0%	-	-	-	NULL
GATA1	2623	genome.wustl.edu	37	X	48652242	48652242	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002049.3	+1	reviewed	p.R305*	0.985	58	0%	22	54.5%	0	-	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
HDAC6	10013	genome.wustl.edu	37	X	48661140	48661140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006044.2	+1	reviewed	p.R14Q	0.015	112	0%	65	35.4%	11	0%	unknown(0)	deleterious(0)	-	NULL
HDAC6	10013	genome.wustl.edu	37	X	48664814	48664814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006044.2	+1	reviewed	p.M159I	1.000	176	0%	68	48.5%	23	0%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
OTUD5	55593	genome.wustl.edu	37	X	48801514	48801514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017602.3	-1	reviewed	p.D209Y	1.000	54	0%	58	50%	43	0%	possibly_damaging(0.925)	tolerated(0.06)	deleterious(0.696)	superfamily_Cysteine proteinases
TFE3	7030	genome.wustl.edu	37	X	48891020	48891020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006521.4	-1	reviewed	p.I366V	1.000	180	0%	101	36.6%	44	0%	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
PRICKLE3	4007	genome.wustl.edu	37	X	49034343	49034343	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000453382	-1	known	p.R331W	0.202	114	0%	23	39.1%	12	83.3%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
CACNA1F	778	genome.wustl.edu	37	X	49079042	49079042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005183.2	-1	reviewed	p.L754I	1.000	135	0%	103	44.7%	0	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CLCN5	1184	genome.wustl.edu	37	X	49840503	49840503	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001127898.1	+1	reviewed	p.E157*	1.000	478	0%	98	40.8%	0	-	-	-	-	superfamily_Clc chloride channel
AKAP4	8852	genome.wustl.edu	37	X	49957010	49957010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003886.2	-1	reviewed	p.Q785P	0.844	225	0.4%	44	45.5%	0	-	benign(0.406)	deleterious(0.02)	deleterious(0.514)	HMMPfam_AKAP_110,HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50037906	50037906	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033031.2	+1	reviewed	p.K83T	0.002	331	0%	159	49.7%	0	-	possibly_damaging(0.875)	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50052844	50052844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033031.2	+1	reviewed	p.D559Y	0.001	35	0%	22	27.3%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50054196	50054196	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033031.2	+1	reviewed	p.F1009	0.000	186	0%	46	67.4%	0	-	-	-	-	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50339689	50339689	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_027121.1	-1	reviewed	NULL	0.000	79	0%	19	42.1%	0	-	-	-	-	-
SHROOM4	57477	genome.wustl.edu	37	X	50376276	50376276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020717.3	-1	reviewed	p.R933W	0.985	150	0%	79	48.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000245461	0	genome.wustl.edu	37	X	51488722	51488722	+	RNA	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000502175	-1	novel	NULL	0.981	34	0%	55	50.9%	1	0%	-	-	-	-
MAGED1	9500	genome.wustl.edu	37	X	51638371	51638371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005333.1	+1	reviewed	p.G146S	1.000	108	0%	43	51.2%	120	0%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
MAGED1	9500	genome.wustl.edu	37	X	51638376	51638376	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005333.1	+1	reviewed	p.V147	1.000	108	0%	45	31.1%	128	91.4%	-	-	-	NULL
MAGED1	9500	genome.wustl.edu	37	X	51640890	51640890	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005333.1	+1	reviewed	e7-1	1.000	184	0%	179	10.1%	0	-	-	-	-	-
MAGED1	9500	genome.wustl.edu	37	X	51641229	51641229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001005333.1	+1	reviewed	p.L616F	1.000	420	0%	205	46.3%	324	0.3%	unknown(0)	tolerated(0.12)	-	HMMPfam_MAGE
TSPYL2	64061	genome.wustl.edu	37	X	53115363	53115363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022117.3	+1	reviewed	p.D597N	0.999	440	0%	235	48.1%	56	0%	possibly_damaging(0.509)	deleterious(0)	deleterious(0.615)	NULL
RIBC1	158787	genome.wustl.edu	37	X	53454996	53454996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001031745.1	+1	provisional	p.R55W	0.131	658	0.2%	136	50.7%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RIB43A
HUWE1	10075	genome.wustl.edu	37	X	53564536	53564536	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031407.4	-1	reviewed	p.E4040*	1.000	313	0.6%	123	44.7%	132	0%	-	-	-	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53571546	53571546	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000427052	-1	known	p.E2776*	1.000	252	0%	35	40%	111	0.9%	unknown(0)	tolerated(0.33)	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53590732	53590732	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000427052	-1	known	p.R1394W	1.000	344	0.3%	150	44.7%	48	93.7%	-	-	-	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53634632	53634632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031407.4	-1	reviewed	p.N783S	1.000	172	0%	99	37.4%	13	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF913
HUWE1	10075	genome.wustl.edu	37	X	53655837	53655837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031407.4	-1	reviewed	p.S327Y	1.000	163	0%	125	44.8%	11	0%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	HMMPfam_DUF908,superfamily_ARM repeat
WNK3	65267	genome.wustl.edu	37	X	54228503	54228503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020922.4	-1	reviewed	p.S1665F	0.974	365	0%	323	44%	1	100%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
WNK3	65267	genome.wustl.edu	37	X	54277993	54277993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020922.4	-1	reviewed	p.S832Y	0.000	255	0%	124	41.1%	0	-	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	superfamily_Kinase_like
WNK3	65267	genome.wustl.edu	37	X	54328244	54328244	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020922.4	-1	reviewed	p.E380*	1.000	772	0%	381	42%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
WNK3	65267	genome.wustl.edu	37	X	54334477	54334477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020922.4	-1	reviewed	p.E323*	1.000	335	0%	193	35.8%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
WNK3	65267	genome.wustl.edu	37	X	54337640	54337640	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020922.4	-1	reviewed	p.R208*	1.000	212	0%	218	41.3%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
WNK3	65267	genome.wustl.edu	37	X	54359800	54359800	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020922.4	-1	reviewed	p.E103*	1.000	411	0%	293	44%	1	0%	-	-	-	NULL
WNK3	65267	genome.wustl.edu	37	X	54359973	54359973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020922.4	-1	reviewed	p.T45I	0.027	160	0%	128	40.6%	0	-	possibly_damaging(0.619)	tolerated(0.37)	neutral(0.234)	NULL
FGD1	2245	genome.wustl.edu	37	X	54482718	54482718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004463.2	-1	reviewed	p.K593Q	1.000	195	0%	66	50%	57	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GNL3L	54552	genome.wustl.edu	37	X	54559005	54559005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019067.5	+1	reviewed	p.M2I	0.997	166	0%	195	43.1%	8	100%	benign(0)	deleterious(0)	neutral(0.445)	NULL
GNL3L	54552	genome.wustl.edu	37	X	54585084	54585084	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019067.5	+1	reviewed	p.R554	0.963	92	0%	23	34.8%	12	8.3%	-	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54784303	54784303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198510.2	-1	reviewed	p.T735N	0.000	644	0%	159	41.5%	0	-	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54818409	54818409	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198510.2	-1	reviewed	p.I106	0.985	844	0%	436	45.6%	0	-	-	-	-	HMMSmart_VIT,HMMPfam_VIT
MAGED2	10916	genome.wustl.edu	37	X	54836183	54836183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014599.4	+1	reviewed	p.S25L	0.002	508	0%	193	44%	246	0%	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
LOC100288052	100288052	genome.wustl.edu	37	X	54842131	54842131	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002344195.1	-1	model	p.R7	0.111	24	0.000	9	0.778	10	0%	-	-	-	NULL
PAGE2	203569	genome.wustl.edu	37	X	55117022	55117022	+	Missense_Mutation	SNP	C	C	A	rs2453228	byCluster	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_207339.2	+1	provisional	p.Q58K	0.002	472	0%	163	42.9%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_GAGE
MAGEH1	28986	genome.wustl.edu	37	X	55479304	55479304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014061.3	+1	reviewed	p.R166Q	0.226	122	0%	39	48.7%	11	54.5%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_MAGE
USP51	158880	genome.wustl.edu	37	X	55513396	55513396	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_201286.3	-1	validated	p.G659	1.000	130	0%	151	41.1%	6	0%	-	-	-	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_SSF54001
RRAGB	10325	genome.wustl.edu	37	X	55782281	55782281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016656.3	+1	validated	p.S276Y	1.000	111	0%	93	38.7%	16	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLF8	11279	genome.wustl.edu	37	X	56295863	56295863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007250.4	+1	reviewed	p.E233D	0.997	357	0%	60	48.3%	0	-	benign(0.008)	tolerated(0.57)	neutral(0.006)	NULL
FAAH2	158584	genome.wustl.edu	37	X	57313440	57313440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174912.3	+1	reviewed	p.R61Q	0.939	186	0%	33	42.4%	7	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Amidase signature (AS) enzymes
FAAH2	158584	genome.wustl.edu	37	X	57367776	57367776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_174912.3	+1	reviewed	p.R232Q	1.000	539	0%	58	56.9%	13	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes,PatternScan_AMIDASES
ZXDB	158586	genome.wustl.edu	37	X	57620489	57620489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_007157.3	+1	validated	p.D670N	1.000	99	0%	99	39.4%	2	50%	possibly_damaging(0.67)	deleterious(0)	deleterious(0.682)	NULL
FAM123B	139285	genome.wustl.edu	37	X	63411366	63411366	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152424.3	-1	reviewed	p.R601*	0.000	123	0%	38	34.2%	5	0%	-	-	-	NULL
ASB12	142689	genome.wustl.edu	37	X	63444798	63444798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_130388.2	-1	reviewed	p.D236N	0.997	489	0%	80	47.5%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
MTMR8	55613	genome.wustl.edu	37	X	63488628	63488628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017677.3	-1	reviewed	p.G635D	0.000	268	0%	67	16.4%	0	-	probably_damaging(0.998)	-	-	NULL
ZC4H2	55906	genome.wustl.edu	37	X	64140107	64140107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018684.2	-1	validated	p.E84D	0.998	417	0%	114	37.7%	44	0%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_zf-C4H2
ZC3H12B	340554	genome.wustl.edu	37	X	64708943	64708943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010888.3	+1	reviewed	p.R77C	0.959	111	0%	39	35.9%	5	0%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64722449	64722449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001010888.3	+1	reviewed	p.R613L	0.991	165	0%	42	33.3%	1	0%	benign(0.267)	deleterious(0)	deleterious(0.473)	NULL
LOC100129585	100129585	genome.wustl.edu	37	X	65176054	65176054	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001721365.2	-1	model	p.E115*	0.685	26	0%	15	40%	1	0%	-	-	-	NULL
HEPH	9843	genome.wustl.edu	37	X	65417560	65417560	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138737.3	+1	reviewed	p.E516*	0.990	214	0.5%	20	55%	3	0%	-	-	-	superfamily_Cupredoxins
EDA2R	60401	genome.wustl.edu	37	X	65835850	65835850	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021783.2	-1	reviewed	p.E5*	1.000	285	0%	24	50%	3	0%	-	-	-	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
LOC100129144	100129144	genome.wustl.edu	37	X	66594510	66594510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001721427.1	+1	model	p.E181D	0.972	42	0%	12	50%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
AR	367	genome.wustl.edu	37	X	66943614	66943614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000044.2	+1	reviewed	p.E898D	1.000	244	0%	57	36.8%	3	0%	possibly_damaging(0.698)	deleterious(0.03)	deleterious(0.615)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
OPHN1	4983	genome.wustl.edu	37	X	67414307	67414307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002547.2	-1	reviewed	p.M380L	1.000	358	0%	139	46.8%	2	0%	benign(0.002)	tolerated(0.25)	neutral(0.037)	superfamily_Rho_GAP
IGBP1	3476	genome.wustl.edu	37	X	69354503	69354503	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001551.2	+1	reviewed	p.E107*	1.000	161	0%	117	39.3%	78	0%	-	-	-	HMMPfam_TAP42
P2RY4	5030	genome.wustl.edu	37	X	69479126	69479126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002565.3	-1	reviewed	p.W117R	0.983	232	0%	37	51.4%	1	100%	possibly_damaging(0.62)	tolerated(0.12)	deleterious(0.477)	HMMPfam_7tm_1,superfamily_SSF81321
ARR3	407	genome.wustl.edu	37	X	69489205	69489205	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004312.2	+1	validated	e1-1	0.974	390	0%	138	47.8%	0	-	-	-	-	-
ARR3	407	genome.wustl.edu	37	X	69497581	69497581	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004312.2	+1	validated	p.E209*	0.988	154	0%	111	55%	0	-	-	-	-	HMMPfam_Arrestin_C,superfamily_E set domains
KIF4A	24137	genome.wustl.edu	37	X	69595064	69595064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012310.4	+1	reviewed	p.R597C	1.000	120	0%	70	47.1%	26	0%	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
KIF4A	24137	genome.wustl.edu	37	X	69625746	69625746	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012310.4	+1	reviewed	p.I989	0.035	117	0%	91	35.2%	47	0%	-	-	-	NULL
DLG3	1741	genome.wustl.edu	37	X	69699063	69699063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021120.3	+1	reviewed	p.S490N	1.000	293	0%	99	40.4%	28	0%	unknown(0)	tolerated(0.06)	-	superfamily_SH3-domain
DLG3	1741	genome.wustl.edu	37	X	69722044	69722044	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021120.3	+1	reviewed	p.I793M	1.000	370	0%	161	49.7%	48	100%	possibly_damaging(0.795)	deleterious(0)	deleterious(0.743)	HMMSmart_SM00072,HMMPfam_Gua_kin_assoc_C,superfamily_P-loop containing nucleoside triphosphate hydrolases
TEX11	56159	genome.wustl.edu	37	X	69748972	69748972	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003811.1	-1	reviewed	p.E932	0.014	294	0%	84	44%	0	-	-	-	-	NULL
TEX11	56159	genome.wustl.edu	37	X	69830377	69830377	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001003811.1	-1	reviewed	p.R605*	0.742	297	0%	150	50.7%	0	-	-	-	-	NULL
FOXO4	4303	genome.wustl.edu	37	X	70321275	70321275	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005938.3	+1	reviewed	p.L399	0.940	74	0%	34	50%	3	66.6%	-	-	-	NULL
CXorf65	158830	genome.wustl.edu	37	X	70323843	70323843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001025265.2	-1	validated	p.K182N	0.870	446	0%	256	42.2%	0	-	possibly_damaging(0.45)	deleterious(0)	deleterious(0.592)	NULL
IL2RG	3561	genome.wustl.edu	37	X	70328128	70328128	+	Missense_Mutation	SNP	G	G	A	rs137852509		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000206.2	-1	reviewed	p.S308L	1.000	603	0%	135	43.7%	23	0%	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
IL2RG	3561	genome.wustl.edu	37	X	70329108	70329108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000206.2	-1	reviewed	p.P243T	0.001	384	0%	124	51.6%	19	0%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	PatternScan_HEMATOPO_REC_S_F1,superfamily_FN_III-like
IL2RG	3561	genome.wustl.edu	37	X	70330492	70330492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000206.2	-1	reviewed	p.L106I	0.577	797	0%	270	46.3%	15	0%	probably_damaging(0.982)	tolerated(0.26)	neutral(0.461)	superfamily_FN_III-like
IL2RG	3561	genome.wustl.edu	37	X	70330935	70330935	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000487883	-1	known	p.S15	0.004	222	0%	75	34.7%	1	0%	-	-	-	NULL
MED12	9968	genome.wustl.edu	37	X	70342421	70342421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005120.2	+1	reviewed	p.R438C	1.000	409	0%	93	49.5%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70464182	70464182	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005096.3	-1	reviewed	p.T1084P	0.935	483	0%	70	31.4%	30	0%	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70464278	70464278	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005096.3	-1	reviewed	p.S1052A	0.999	322	0%	67	28.4%	34	0%	possibly_damaging(0.478)	tolerated(0.4)	neutral(0.174)	NULL
ITGB1BP2	26548	genome.wustl.edu	37	X	70522402	70522402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012278.1	+1	provisional	p.P105S	1.000	86	0%	71	12.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70587424	70587424	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004606.3	+1	reviewed	p.E86*	1.000	158	0%	171	40.9%	6	0%	-	-	-	HMMPfam_TBP-binding,superfamily_TAF_II_230
TAF1	6872	genome.wustl.edu	37	X	70602467	70602467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004606.3	+1	reviewed	p.R560Q	1.000	209	0.5%	143	36.4%	6	0%	probably_damaging(0.976)	tolerated(0.09)	deleterious(0.714)	NULL
TAF1	6872	genome.wustl.edu	37	X	70618511	70618511	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000483985	+1	known	p.G147*	1.000	621	0%	239	45.2%	13	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70621538	70621538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004606.3	+1	reviewed	p.L1336R	1.000	482	0%	239	41.4%	6	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAF1	6872	genome.wustl.edu	37	X	70680589	70680589	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004606.3	+1	reviewed	p.S1799R	1.000	203	0%	154	43.5%	27	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
OGT	8473	genome.wustl.edu	37	X	70756096	70756096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_181672.2	+1	reviewed	p.D36Y	1.000	209	0%	131	38.2%	7	0%	possibly_damaging(0.909)	tolerated(0.1)	deleterious(0.648)	HMMSmart_SM00028,superfamily_TPR-like
OGT	8473	genome.wustl.edu	37	X	70767789	70767789	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000455587	+1	known	p.R148Q	0.989	398	0%	282	40.8%	11	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ACRC	93953	genome.wustl.edu	37	X	70817887	70817887	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_052957.4	+1	validated	p.D103	0.066	310	0%	147	43.5%	1	0%	-	-	-	NULL
RGAG4	340526	genome.wustl.edu	37	X	71350169	71350169	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024455.3	-1	validated	p.E408*	0.154	669	0%	703	35.7%	5	0%	-	-	-	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71425526	71425526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017669.2	-1	validated	p.E1031K	0.922	553	0%	211	43.6%	11	0%	possibly_damaging(0.658)	deleterious(0)	deleterious(0.677)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71426726	71426726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017669.2	-1	validated	p.E631K	0.990	238	0%	107	44.9%	6	100%	benign(0.05)	tolerated(0.31)	neutral(0.030)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71426902	71426902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017669.2	-1	validated	p.R572Q	1.000	305	0%	132	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
PHKA1	5255	genome.wustl.edu	37	X	71813024	71813024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002637.3	-1	reviewed	p.R1058I	0.991	306	0%	78	48.7%	8	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PHK_AB
PHKA1	5255	genome.wustl.edu	37	X	71838687	71838687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002637.3	-1	reviewed	p.R748C	1.000	239	0%	38	36.8%	0	-	benign(0.219)	tolerated(0.09)	neutral(0.318)	HMMPfam_PHK_AB
PHKA1	5255	genome.wustl.edu	37	X	71875991	71875991	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002637.3	-1	reviewed	p.V340	0.999	439	0%	195	38.5%	0	-	-	-	-	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
PHKA1	5255	genome.wustl.edu	37	X	71876083	71876083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002637.3	-1	reviewed	p.R310C	0.998	320	0.3%	126	48.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
NAP1L2	4674	genome.wustl.edu	37	X	72433253	72433253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021963.2	-1	reviewed	p.R359Q	1.000	133	0%	104	34.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_NAP
NAP1L2	4674	genome.wustl.edu	37	X	72433914	72433914	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021963.2	-1	reviewed	p.K139Q	1.000	479	0%	231	43.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_NAP
BMP2KL	347359	genome.wustl.edu	37	X	73405851	73405851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000373488	+1	known	p.E33K	1.000	20	0%	18	38.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SLC16A2	6567	genome.wustl.edu	37	X	73641704	73641704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006517.3	+1	reviewed	p.E152K	0.879	22	0%	15	46.7%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_MFS_gen_substrate_transporter
RLIM	51132	genome.wustl.edu	37	X	73812696	73812696	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016120.3	-1	reviewed	p.S152A	0.386	268	0.4%	176	43.8%	11	90.9%	benign(0.022)	tolerated(0.9)	neutral(0.001)	NULL
ABCB7	22	genome.wustl.edu	37	X	74291397	74291397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004299.3	-1	reviewed	p.F386S	1.000	248	0%	48	37.5%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
ABCB7	22	genome.wustl.edu	37	X	74291498	74291498	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004299.3	-1	reviewed	p.Y352	1.000	158	0%	38	47.4%	23	100%	-	-	-	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
ABCB7	22	genome.wustl.edu	37	X	74376054	74376054	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004299.3	-1	reviewed	p.F18	0.998	41	0%	13	53.8%	9	0%	-	-	-	NULL
UPRT	139596	genome.wustl.edu	37	X	74519615	74519615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_145052.3	+1	reviewed	p.R203Q	1.000	236	0%	60	38.3%	30	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PRTase-like
ZDHHC15	158866	genome.wustl.edu	37	X	74670692	74670692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144969.2	-1	reviewed	p.Q108H	1.000	411	0%	40	17.5%	1	0%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	NULL
ZDHHC15	158866	genome.wustl.edu	37	X	74698783	74698783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144969.2	-1	reviewed	p.F67L	1.000	278	0%	119	37.8%	2	100%	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
ATRX	546	genome.wustl.edu	37	X	76889166	76889166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000489.3	-1	reviewed	p.D1615G	1.000	91	0%	51	51%	8	87.5%	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76907711	76907711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000489.3	-1	reviewed	p.L1484I	1.000	1226	0%	415	38.8%	18	0%	possibly_damaging(0.744)	tolerated(0.44)	neutral(0.286)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76909627	76909627	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000489.3	-1	reviewed	p.R1426	0.999	696	0%	297	41.8%	16	100%	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76920185	76920185	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000489.3	-1	reviewed	p.E1298*	0.645	466	0%	393	43.5%	12	0%	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76937678	76937678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000489.3	-1	reviewed	p.E1024*	0.416	113	0%	108	50.9%	15	0%	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76938149	76938149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000489.3	-1	reviewed	p.N867H	0.000	314	0%	155	14.8%	10	20%	benign(0.01)	tolerated(0.16)	neutral(0.060)	NULL
ATRX	546	genome.wustl.edu	37	X	76938341	76938341	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000489.3	-1	reviewed	p.I803L	0.003	109	0%	123	41.5%	7	100%	benign(0.235)	tolerated(0.07)	neutral(0.343)	NULL
PGAM4	441531	genome.wustl.edu	37	X	77224439	77224439	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001029891.2	-1	reviewed	p.L233	1.000	92	0%	54	40.7%	1	0%	-	-	-	superfamily_SSF53254
TAF9B	51616	genome.wustl.edu	37	X	77387183	77387183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015975.4	-1	reviewed	p.S227L	1.000	882	0%	346	49.7%	21	100%	possibly_damaging(0.626)	deleterious(0.04)	deleterious(0.567)	NULL
TAF9B	51616	genome.wustl.edu	37	X	77393561	77393561	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015975.4	-1	reviewed	p.I56M	1.000	205	0%	105	42.9%	13	100%	benign(0.045)	tolerated(0.12)	neutral(0.263)	HMMPfam_TFIID-31kDa,superfamily_Histone-fold
TAF9B	51616	genome.wustl.edu	37	X	77394372	77394372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015975.4	-1	reviewed	p.R34M	1.000	305	0%	223	43.9%	10	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_TFIID-31kDa,superfamily_Histone-fold
ZCCHC5	203430	genome.wustl.edu	37	X	77913164	77913164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152694.2	-1	reviewed	p.P252S	0.001	61	0%	32	43.8%	0	-	benign(0.001)	tolerated(0.96)	-	NULL
ITM2A	9452	genome.wustl.edu	37	X	78616601	78616601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004867.4	-1	reviewed	p.K259N	1.000	116	0%	50	40%	2	0%	probably_damaging(0.956)	tolerated(0.12)	deleterious(0.660)	NULL
ITM2A	9452	genome.wustl.edu	37	X	78616847	78616847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004867.4	-1	reviewed	p.R228C	0.985	165	0%	41	51.2%	7	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TBX22	50945	genome.wustl.edu	37	X	79286242	79286242	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001109878.1	+1	reviewed	p.S399R	0.923	305	0%	75	56%	0	-	probably_damaging(0.965)	tolerated(0.06)	deleterious(0.730)	NULL
FAM46D	169966	genome.wustl.edu	37	X	79698333	79698333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152630.4	+1	validated	p.V99I	0.737	153	0%	24	20.8%	0	-	benign(0.002)	tolerated(0.27)	neutral(0.034)	HMMPfam_DUF1693
FAM46D	169966	genome.wustl.edu	37	X	79699041	79699041	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152630.4	+1	validated	p.E335*	1.000	167	0%	15	26.7%	0	-	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79932302	79932302	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153252.4	-1	reviewed	p.G1739*	1.000	373	0%	53	30.2%	4	0%	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79937997	79937997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153252.4	-1	reviewed	p.S1455N	1.000	588	0%	57	50.9%	8	0%	possibly_damaging(0.832)	tolerated(0.38)	neutral(0.335)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79942391	79942391	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153252.4	-1	reviewed	p.R1326*	1.000	375	0%	64	48.4%	2	100%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
POU3F4	5456	genome.wustl.edu	37	X	82764336	82764336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000307.3	+1	reviewed	p.R335K	1.000	62	0%	14	28.6%	0	-	benign(0.383)	deleterious(0.02)	deleterious(0.506)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CYLC1	1538	genome.wustl.edu	37	X	83124910	83124910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021118.1	+1	provisional	p.P19S	0.084	36	0.000	9	0.778	0	-	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	NULL
CYLC1	1538	genome.wustl.edu	37	X	83128546	83128546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021118.1	+1	provisional	p.S277Y	0.848	44	2.3%	17	47.1%	0	-	unknown(0)	tolerated(0.08)	-	NULL
CYLC1	1538	genome.wustl.edu	37	X	83129150	83129150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021118.1	+1	provisional	p.K478N	0.004	131	0%	35	45.7%	0	-	unknown(0)	tolerated(0.28)	-	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83361979	83361979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014496.4	-1	reviewed	p.S394Y	0.523	188	0%	67	44.8%	0	-	benign(0.257)	deleterious(0.01)	neutral(0.432)	HMMPfam_Pkinase_C
RPS6KA6	27330	genome.wustl.edu	37	X	83374998	83374998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014496.4	-1	reviewed	p.K228N	1.000	154	0%	55	52.7%	1	0%	benign(0.012)	tolerated(0.14)	neutral(0.250)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPS6KA6	27330	genome.wustl.edu	37	X	83419347	83419347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014496.4	-1	reviewed	p.D44Y	1.000	172	0%	158	24.1%	0	-	benign(0)	tolerated(0.98)	-	NULL
ZNF711	7552	genome.wustl.edu	37	X	84525067	84525067	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021998.4	+1	reviewed	p.Q341H	0.983	128	0%	46	41.3%	7	85.7%	probably_damaging(0.982)	tolerated(1)	neutral(0.426)	HMMPfam_Zfx_Zfy_act
ZNF711	7552	genome.wustl.edu	37	X	84525757	84525757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021998.4	+1	reviewed	p.K403N	1.000	48	0%	15	40%	5	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POF1B	79983	genome.wustl.edu	37	X	84561194	84561194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024921.3	-1	reviewed	p.R437I	0.998	266	0%	87	41.4%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
POF1B	79983	genome.wustl.edu	37	X	84634327	84634327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024921.3	-1	reviewed	p.K45Q	1.000	315	0%	49	49%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
TGIF2LX	90316	genome.wustl.edu	37	X	89177721	89177721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138960.3	+1	reviewed	p.D213N	0.453	126	0%	84	13.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PABPC5	140886	genome.wustl.edu	37	X	90690960	90690960	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080832.2	+1	reviewed	p.A128	1.000	67	0%	51	45.1%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PABPC5	140886	genome.wustl.edu	37	X	90691409	90691409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080832.2	+1	reviewed	p.I278T	0.998	65	0%	62	53.2%	0	-	benign(0.002)	tolerated(0.43)	neutral(0.013)	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91542972	91542972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000504220	+1	known	p.L1051F	0.005	410	0%	115	46.1%	0	-	benign(0.053)	-	-	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91873800	91873800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032968.3	+1	reviewed	p.S1302Y	0.661	357	0%	72	43.1%	0	-	possibly_damaging(0.509)	deleterious(0)	deleterious(0.615)	NULL
NAP1L3	4675	genome.wustl.edu	37	X	92927595	92927595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004538.4	-1	reviewed	p.D237Y	0.887	240	0%	218	42.2%	1	0%	possibly_damaging(0.479)	deleterious(0.01)	deleterious(0.564)	HMMPfam_NAP
FAM133A	286499	genome.wustl.edu	37	X	92964553	92964553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173698.2	+1	validated	p.K45N	1.000	42	0%	17	23.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RPA4	29935	genome.wustl.edu	37	X	96139434	96139434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_013347.4	+1	reviewed	p.R42Q	0.000	286	0%	82	50%	1	100%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
DIAPH2	1730	genome.wustl.edu	37	X	96171473	96171473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006729.4	+1	reviewed	p.L257I	1.000	139	0%	22	54.5%	2	0%	unknown(0)	tolerated(1)	-	HMMPfam_Drf_GBD
DIAPH2	1730	genome.wustl.edu	37	X	96328002	96328002	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006729.4	+1	reviewed	p.E705*	1.000	183	0%	178	44.9%	3	66.6%	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PCDH19	57526	genome.wustl.edu	37	X	99662008	99662008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105243.1	-1	reviewed	p.E530K	1.000	45	0%	71	52.1%	8	100%	probably_damaging(0.973)	deleterious(0.05)	deleterious(0.760)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99662051	99662051	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001105243.1	-1	reviewed	p.I515	1.000	42	0%	63	44.4%	7	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
TSPAN6	7105	genome.wustl.edu	37	X	99890195	99890195	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003270.2	-1	reviewed	p.G111*	1.000	278	0%	125	38.4%	124	0%	-	-	-	HMMPfam_Tetraspannin
SRPX2	27286	genome.wustl.edu	37	X	99922394	99922394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014467.2	+1	reviewed	p.S362Y	1.000	256	0%	147	12.9%	1	0%	possibly_damaging(0.684)	tolerated(0.25)	neutral(0.281)	NULL
SYTL4	94121	genome.wustl.edu	37	X	99942166	99942166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001129896.2	-1	reviewed	p.A361D	0.975	165	0%	43	41.9%	3	0%	benign(0.039)	deleterious(0.04)	neutral(0.351)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
XKRX	402415	genome.wustl.edu	37	X	100169570	100169570	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_212559.2	-1	reviewed	p.F382	1.000	151	0%	46	32.6%	0	-	-	-	-	NULL
ARL13A	392509	genome.wustl.edu	37	X	100240748	100240748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012990.3	+1	validated	p.D75Y	0.976	194	0%	125	46.4%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	superfamily_SSF52540
ARL13A	392509	genome.wustl.edu	37	X	100241886	100241886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012990.3	+1	validated	p.R161Q	0.770	97	1%	100	14%	0	-	possibly_damaging(0.909)	tolerated(0.3)	neutral(0.391)	HMMPfam_Arf,superfamily_SSF52540
ARL13A	392509	genome.wustl.edu	37	X	100243396	100243396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012990.3	+1	validated	p.K258N	0.915	153	0%	143	32.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CENPI	2491	genome.wustl.edu	37	X	100400134	100400134	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006733.2	+1	reviewed	p.R549	0.975	546	0%	213	46.5%	5	0%	-	-	-	NULL
DRP2	1821	genome.wustl.edu	37	X	100486731	100486731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001939.2	+1	reviewed	p.R32Q	0.765	116	0%	35	40%	0	-	benign(0.023)	tolerated(0.12)	neutral(0.262)	NULL
DRP2	1821	genome.wustl.edu	37	X	100502118	100502118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001939.2	+1	reviewed	p.A406V	1.000	475	0%	106	50.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_efhand_1,superfamily_SSF47473
DRP2	1821	genome.wustl.edu	37	X	100509892	100509892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001939.2	+1	reviewed	p.R720Q	1.000	206	0%	66	53%	0	-	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	NULL
TAF7L	54457	genome.wustl.edu	37	X	100547862	100547862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024885.3	-1	reviewed	p.P58T	0.000	73	1.4%	112	50%	0	-	possibly_damaging(0.494)	deleterious(0)	deleterious(0.609)	NULL
BTK	695	genome.wustl.edu	37	X	100617570	100617570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000061.2	-1	reviewed	p.I167V	1.000	160	0%	93	39.8%	0	-	unknown(0)	tolerated(0.56)	-	HMMPfam_BTK,HMMSmart_BTK,superfamily_SSF50729
GLA	2717	genome.wustl.edu	37	X	100652899	100652899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000169.2	-1	reviewed	p.F396L	0.024	143	0%	87	41.4%	34	0%	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_Glycosyl hydrolase domain
HNRNPH2	3188	genome.wustl.edu	37	X	100667200	100667200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001032393.1	+1	reviewed	p.R75K	1.000	281	0%	184	38%	98	0%	benign(0.082)	tolerated(0.35)	neutral(0.027)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ARMCX1	51309	genome.wustl.edu	37	X	100808676	100808676	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016608.1	+1	reviewed	p.L255	0.998	182	0%	69	15.9%	6	0%	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX1	51309	genome.wustl.edu	37	X	100809149	100809149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016608.1	+1	reviewed	p.F412L	1.000	219	0%	194	50%	7	57.1%	possibly_damaging(0.639)	deleterious(0.01)	deleterious(0.629)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX3	51566	genome.wustl.edu	37	X	100880877	100880877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016607.3	+1	reviewed	p.L303R	1.000	97	0%	79	35.4%	36	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100911659	100911659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014782.5	-1	reviewed	p.E306K	0.129	321	0.3%	111	36.9%	47	82.9%	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	NULL
NXF5	55998	genome.wustl.edu	37	X	101095494	101095494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032946.2	-1	reviewed	p.F225L	0.025	656	0%	175	49.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_L domain-like
ZMAT1	84460	genome.wustl.edu	37	X	101138493	101138493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011657.2	-1	reviewed	p.L636I	1.000	89	0%	60	30%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101138740	101138740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011657.2	-1	reviewed	p.E553D	0.998	616	0%	222	42.3%	0	-	probably_damaging(0.973)	tolerated(0.16)	deleterious(0.474)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101139558	101139558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011657.2	-1	reviewed	p.A281T	0.000	276	0%	70	41.4%	3	0%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101152904	101152904	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001011657.2	-1	reviewed	p.K148*	0.975	315	0%	60	46.7%	0	-	-	-	-	HMMSmart_SM00451,HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers
BEX5	340542	genome.wustl.edu	37	X	101409072	101409072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001012978.2	-1	validated	p.D56N	0.317	623	0%	257	45.1%	64	0%	benign(0)	tolerated(1)	-	HMMPfam_BEX
NXF2B	728343	genome.wustl.edu	37	X	101615528	101615528	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099686.1	-1	provisional	p.I625	0.000	583	0%	258	43.8%	0	-	-	-	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101909731	101909731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099410.1	+1	reviewed	p.S297Y	0.990	119	0%	107	43%	0	-	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101910148	101910148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099410.1	+1	reviewed	p.G436V	0.006	78	0%	37	37.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101972171	101972171	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004051.2	+1	reviewed	p.K792Q	0.550	49	0%	78	33.3%	4	0%	benign(0.226)	tolerated(0.13)	neutral(0.275)	HMMPfam_DUF634,superfamily_ARM-type_fold
BHLHB9	80823	genome.wustl.edu	37	X	102005452	102005452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001142524.1	+1	validated	p.F510S	1.000	235	0%	114	43%	4	100%	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	HMMPfam_DUF634,superfamily_ARM-type_fold
NXF3	56000	genome.wustl.edu	37	X	102334536	102334536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022052.1	-1	reviewed	p.N399D	1.000	197	0.5%	310	43.2%	0	-	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	HMMPfam_NTF2,superfamily_NTF2-like
WBP5	51186	genome.wustl.edu	37	X	102612899	102612899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001006612.1	+1	reviewed	p.R96Q	1.000	204	0%	156	12.2%	359	0%	probably_damaging(0.975)	tolerated(0.07)	deleterious(0.736)	HMMPfam_TFA
GLRA4	441509	genome.wustl.edu	37	X	102968474	102968474	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024452.2	-1	validated	p.R353*	1.000	393	0%	72	38.9%	0	-	-	-	-	superfamily_Neurotransmitter-gated ion-channel transmembrane pore
TMEM31	203562	genome.wustl.edu	37	X	102968809	102968809	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182541.2	+1	validated	p.L130	0.045	447	0.2%	118	40.7%	1	0%	-	-	-	NULL
TMEM31	203562	genome.wustl.edu	37	X	102968903	102968903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182541.2	+1	validated	p.V162I	0.012	258	0%	84	44%	0	-	unknown(0)	-	-	NULL
GLRA4	441509	genome.wustl.edu	37	X	102979101	102979101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001024452.2	-1	validated	p.F133L	1.000	302	0%	95	51.6%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
LOC100287881	100287881	genome.wustl.edu	37	X	102983205	102983205	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343835.1	+1	model	p.K174N	0.002	208	0%	41	51.2%	0	-	-	-	-	NULL
ZCCHC18	644353	genome.wustl.edu	37	X	103359337	103359337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001143978.1	+1	provisional	p.L179I	0.280	168	0%	66	16.7%	0	-	-	-	-	NULL
IL1RAPL2	26280	genome.wustl.edu	37	X	104512093	104512093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017416.1	+1	reviewed	p.R189I	1.000	144	0%	46	21.7%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IL1RAPL2	26280	genome.wustl.edu	37	X	105011355	105011355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017416.1	+1	reviewed	p.A588T	1.000	119	0%	29	34.5%	0	-	possibly_damaging(0.773)	deleterious(0.02)	deleterious(0.670)	NULL
IL1RAPL2	26280	genome.wustl.edu	37	X	105011602	105011602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017416.1	+1	reviewed	p.S670Y	0.988	150	0%	40	37.5%	0	-	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
NRK	203447	genome.wustl.edu	37	X	105187944	105187944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198465.2	+1	validated	p.E1324*	1.000	307	0.3%	170	48.8%	0	-	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
NRK	203447	genome.wustl.edu	37	X	105193673	105193673	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_198465.2	+1	validated	p.E1487A	1.000	135	0%	46	15.2%	0	-	possibly_damaging(0.95)	tolerated(0.32)	neutral(0.418)	HMMPfam_CNH,HMMSmart_SM00036
MUM1L1	139221	genome.wustl.edu	37	X	105451330	105451330	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000337685	+1	known	p.F635	1.000	43	0%	25	20%	0	-	-	-	-	NULL
LOC644504	644504	genome.wustl.edu	37	X	105570813	105570813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_001128075.2	+1	model	p.R64Q	1.000	104	0%	65	38.5%	0	-	-	-	-	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
CXorf57	55086	genome.wustl.edu	37	X	105876195	105876195	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018015.5	+1	validated	p.I374	0.988	157	0%	114	45.6%	1	0%	-	-	-	NULL
RNF128	79589	genome.wustl.edu	37	X	106016375	106016375	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194463.1	+1	reviewed	p.A239	1.000	329	0%	148	48.6%	0	-	-	-	-	NULL
RIPPLY1	92129	genome.wustl.edu	37	X	106144110	106144110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138382.2	-1	validated	p.D109N	1.000	690	0%	214	45.3%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
RIPPLY1	92129	genome.wustl.edu	37	X	106146367	106146367	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138382.2	-1	validated	p.E51*	0.001	184	0%	41	41.5%	0	-	-	-	-	NULL
MORC4	79710	genome.wustl.edu	37	X	106186071	106186071	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024657.4	-1	reviewed	p.E684*	0.984	446	0%	59	45.8%	52	0%	-	-	-	NULL
NUP62CL	54830	genome.wustl.edu	37	X	106396685	106396685	+	Silent	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000432145	-1	known	p.K63T	0.991	119	0%	124	46%	2	100%	-	-	-	HMMPfam_Nsp1_C
NUP62CL	54830	genome.wustl.edu	37	X	106418351	106418351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017681.2	-1	validated	p.S9Y	0.000	273	0%	100	44%	0	-	benign(0.007)	deleterious(0.01)	neutral(0.406)	NULL
PRPS1	5631	genome.wustl.edu	37	X	106884314	106884314	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000372419	+1	known	p.I163M	0.001	159	0%	89	42.7%	0	-	unknown(0)	-	-	NULL
COL4A6	1288	genome.wustl.edu	37	X	107420147	107420147	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001847.2	-1	reviewed	p.N871	0.000	178	0%	113	50.4%	1	100%	-	-	-	HMMPfam_Collagen
ENSG00000189372	0	genome.wustl.edu	37	X	107627034	107627034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000453808	+1	known	p.K96N	0.984	89	0%	42	50%	0	-	possibly_damaging(0.777)	tolerated(0.07)	deleterious(0.609)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
COL4A5	1287	genome.wustl.edu	37	X	107807157	107807157	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033380.1	+1	reviewed	e4+1	1.000	125	0%	43	39.5%	0	-	-	-	-	-
COL4A5	1287	genome.wustl.edu	37	X	107840790	107840790	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033380.1	+1	reviewed	p.G591*	1.000	97	0%	30	50%	3	100%	-	-	-	HMMPfam_Collagen
COL4A5	1287	genome.wustl.edu	37	X	107841942	107841942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033380.1	+1	reviewed	p.T597N	0.010	69	1.4%	24	45.8%	3	0%	unknown(0)	deleterious(0.04)	-	HMMPfam_Collagen
IRS4	8471	genome.wustl.edu	37	X	107975806	107975806	+	Missense_Mutation	SNP	G	G	A	rs28473027	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003604.2	-1	reviewed	p.R1257W	0.789	63	0%	106	37.7%	0	-	probably_damaging(0.999)	-	-	NULL
GUCY2F	2986	genome.wustl.edu	37	X	108652346	108652346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001522.2	-1	reviewed	p.D615Y	1.000	200	0%	98	43.9%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GUCY2F	2986	genome.wustl.edu	37	X	108673606	108673606	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001522.2	-1	reviewed	p.K574T	1.000	413	0%	118	45.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GUCY2F	2986	genome.wustl.edu	37	X	108708626	108708626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001522.2	-1	reviewed	p.Q259H	0.500	190	0%	60	51.7%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ACSL4	2182	genome.wustl.edu	37	X	108926119	108926119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_022977.2	-1	reviewed	p.L120I	1.000	109	0%	45	37.8%	9	0%	possibly_damaging(0.664)	tolerated(0.05)	deleterious(0.581)	superfamily_Acetyl-CoA synthetase-like
PAK3	5063	genome.wustl.edu	37	X	110435827	110435827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001128168.1	+1	reviewed	p.I361L	1.000	100	0%	55	49.1%	0	-	benign(0.167)	deleterious(0)	neutral(0.460)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CAPN6	827	genome.wustl.edu	37	X	110494891	110494891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014289.3	-1	reviewed	p.R260H	1.000	378	0%	83	51.8%	111	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
DCX	1641	genome.wustl.edu	37	X	110574140	110574140	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000371988	-1	known	e4+1	1.000	742	0%	79	38%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	-
ALG13	79868	genome.wustl.edu	37	X	110967048	110967048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000394780	+1	known	p.R508I	0.984	121	0%	76	34.2%	2	0%	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	superfamily_SSF63748
ALG13	79868	genome.wustl.edu	37	X	110970087	110970087	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000394780	+1	known	p.R594*	1.000	240	0%	59	11.9%	2	0%	-	-	-	NULL
ALG13	79868	genome.wustl.edu	37	X	111000888	111000888	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000394780	+1	known	p.Y1016D	0.940	207	0%	34	50%	2	0%	possibly_damaging(0.55)	deleterious(0.05)	deleterious(0.532)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111019653	111019653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012471.2	-1	reviewed	p.S937Y	1.000	133	0%	25	32%	0	-	possibly_damaging(0.437)	deleterious(0.01)	deleterious(0.548)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111019934	111019934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012471.2	-1	reviewed	p.K843N	1.000	156	0%	51	56.9%	0	-	benign(0.18)	deleterious(0.01)	neutral(0.422)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111078341	111078341	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012471.2	-1	reviewed	p.L568	0.923	150	0%	85	49.4%	0	-	-	-	-	HMMPfam_Ion_trans
TRPC5	7224	genome.wustl.edu	37	X	111090422	111090422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012471.2	-1	reviewed	p.F540L	1.000	238	0%	59	42.4%	0	-	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	HMMPfam_Ion_trans
TRPC5	7224	genome.wustl.edu	37	X	111090573	111090573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012471.2	-1	reviewed	p.S490L	1.000	239	0.4%	65	56.9%	0	-	probably_damaging(0.989)	tolerated(0.32)	neutral(0.464)	HMMPfam_Ion_trans
ZCCHC16	340595	genome.wustl.edu	37	X	111698250	111698250	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004308.2	+1	validated	p.L98	0.000	359	0%	65	50.8%	0	-	-	-	-	NULL
AMOT	154796	genome.wustl.edu	37	X	112022362	112022362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113490.1	-1	reviewed	p.A1007V	0.994	122	0%	58	43.1%	3	0%	unknown(0)	deleterious(0.01)	-	NULL
AMOT	154796	genome.wustl.edu	37	X	112022766	112022766	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113490.1	-1	reviewed	p.S872	0.001	266	0%	59	49.2%	5	100%	-	-	-	NULL
AMOT	154796	genome.wustl.edu	37	X	112053212	112053212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001113490.1	-1	reviewed	p.R514C	1.000	287	0%	85	37.6%	4	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
LOC286528	286528	genome.wustl.edu	37	X	113625595	113625595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_210501.3	+1	model	p.E157K	1.000	24	0%	23	60.9%	0	-	-	-	-	HMMPfam_Ssu72
HTR2C	3358	genome.wustl.edu	37	X	114082758	114082758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000868.2	+1	reviewed	p.I181S	1.000	260	0%	71	45.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
HTR2C	3358	genome.wustl.edu	37	X	114141552	114141552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000868.2	+1	reviewed	p.F317L	1.000	245	0%	137	46%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_7tm_1,superfamily_SSF81321
LRCH2	57631	genome.wustl.edu	37	X	114414287	114414287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020871.3	-1	validated	p.L217I	1.000	62	0%	94	11.7%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	superfamily_SSF52058
RBMXL3	139804	genome.wustl.edu	37	X	114425900	114425900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001145346.1	+1	validated	p.E632D	0.570	59	0%	35	17.1%	0	-	benign(0.181)	deleterious(0)	neutral(0.461)	NULL
LUZP4	51213	genome.wustl.edu	37	X	114536567	114536567	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016383.3	+1	validated	p.I34	0.508	88	0%	102	39.2%	0	-	-	-	-	NULL
PLS3	5358	genome.wustl.edu	37	X	114879419	114879419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136025.3	+1	reviewed	p.A421V	1.000	179	0%	130	45.4%	109	0%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
AGTR2	186	genome.wustl.edu	37	X	115303666	115303666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000686.4	+1	reviewed	p.D45Y	0.891	393	0%	74	44.6%	0	-	benign(0.057)	deleterious(0.04)	neutral(0.352)	superfamily_Family A G protein-coupled receptor-like
AGTR2	186	genome.wustl.edu	37	X	115304404	115304404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000686.4	+1	reviewed	p.E291K	0.549	559	0%	53	50.9%	0	-	benign(0.002)	tolerated(0.84)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AGTR2	186	genome.wustl.edu	37	X	115304504	115304504	+	Missense_Mutation	SNP	G	G	T	rs35474657	byCluster;byFrequency;by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000686.4	+1	reviewed	p.R324L	0.456	456	0%	48	45.8%	1	0%	possibly_damaging(0.477)	tolerated(0.12)	neutral(0.418)	superfamily_Family A G protein-coupled receptor-like
KLHL13	90293	genome.wustl.edu	37	X	117035910	117035910	+	Splice_Site	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033495.3	-1	reviewed	e6-1	1.000	196	0%	45	48.9%	0	-	-	-	-	-
KLHL13	90293	genome.wustl.edu	37	X	117043465	117043465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_033495.3	-1	reviewed	p.N389H	1.000	242	0%	55	49.1%	21	0%	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DOCK11	139818	genome.wustl.edu	37	X	117727245	117727245	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144658.3	+1	validated	p.S736	0.999	183	0%	75	49.3%	1	0%	-	-	-	NULL
LOC727838	727838	genome.wustl.edu	37	X	118208996	118208996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343842.1	+1	model	p.E279D	0.000	1393	0%	645	45.9%	0	-	-	-	-	NULL
ENSG00000248857	0	genome.wustl.edu	37	X	118221101	118221101	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000440399	-1	known	p.P771S	0.000	119	0%	41	48.8%	0	-	-	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118222926	118222926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020721.1	-1	validated	p.D756G	0.000	47	0%	25	48%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118250484	118250484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_020721.1	-1	validated	p.R209W	0.000	694	0%	242	45%	0	-	probably_damaging(0.985)	-	-	NULL
SEPT6	23157	genome.wustl.edu	37	X	118784027	118784027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_015129.5	-1	reviewed	p.A188V	1.000	359	0%	148	42.6%	22	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
UPF3B	65109	genome.wustl.edu	37	X	118977168	118977168	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_080632.1	-1	reviewed	p.N189T	1.000	555	0%	702	44.6%	21	0%	benign(0.001)	tolerated(0.89)	-	HMMPfam_Smg4_UPF3
NKAP	79576	genome.wustl.edu	37	X	119059227	119059227	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024528.3	-1	reviewed	p.R402	1.000	203	0%	264	50.8%	23	100%	-	-	-	HMMPfam_DUF926
NKAP	79576	genome.wustl.edu	37	X	119064012	119064012	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024528.3	-1	reviewed	p.F347C	1.000	128	0%	173	44.5%	27	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF926
NKAP	79576	genome.wustl.edu	37	X	119072771	119072771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024528.3	-1	reviewed	p.R130I	1.000	129	0%	131	45.8%	11	0%	unknown(0)	deleterious(0)	-	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119388442	119388442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006777.3	+1	reviewed	p.I391S	1.000	67	0%	77	32.5%	10	70%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119388971	119388971	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006777.3	+1	reviewed	p.S567	0.998	199	0%	109	52.3%	18	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CUL4B	8450	genome.wustl.edu	37	X	119664026	119664026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003588.3	-1	reviewed	p.K859N	1.000	561	0%	195	37.9%	69	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"
CUL4B	8450	genome.wustl.edu	37	X	119694054	119694054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003588.3	-1	reviewed	p.S165Y	1.000	83	0%	159	39.6%	10	0%	benign(0.326)	tolerated(0.09)	neutral(0.398)	NULL
MRRFP1	286423	genome.wustl.edu	37	X	122251564	122251564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000435941	-1	known	p.R16C	0.022	297	0%	47	48.9%	0	-	benign(0.007)	tolerated(0.19)	neutral(0.050)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122387201	122387201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000264357	+1	known	p.D106Y	1.000	451	0%	90	43.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIA3	2892	genome.wustl.edu	37	X	122528965	122528965	+	Missense_Mutation	SNP	G	G	T	rs144807672		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000264357	+1	known	p.K299N	1.000	178	0%	53	49.1%	0	-	benign(0.157)	tolerated(0.18)	neutral(0.070)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIA3	2892	genome.wustl.edu	37	X	122536913	122536913	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000828.4	+1	reviewed	p.S383L	0.159	195	0%	59	49.2%	0	-	-	-	-	NULL
GRIA3	2892	genome.wustl.edu	37	X	122561851	122561851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000264357	+1	known	p.S646Y	1.000	264	0%	71	43.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
THOC2	57187	genome.wustl.edu	37	X	122765613	122765613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081550.1	-1	validated	p.L803I	1.000	184	0%	50	28%	15	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
THOC2	57187	genome.wustl.edu	37	X	122766757	122766757	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081550.1	-1	validated	p.E757D	1.000	358	0%	137	35%	12	0%	benign(0.108)	tolerated(0.11)	neutral(0.280)	NULL
THOC2	57187	genome.wustl.edu	37	X	122820468	122820468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081550.1	-1	validated	p.E233G	1.000	187	0%	130	56.2%	10	100%	benign(0.062)	tolerated(0.05)	neutral(0.349)	NULL
XIAP	331	genome.wustl.edu	37	X	123019538	123019538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001167.2	+1	reviewed	p.S9Y	0.993	48	0%	83	42.2%	3	0%	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
STAG2	10735	genome.wustl.edu	37	X	123179151	123179151	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001042749.1	+1	validated	p.V200	1.000	187	0%	105	16.2%	21	0%	-	-	-	HMMPfam_STAG,superfamily_ARM-type_fold
ODZ1	10178	genome.wustl.edu	37	X	123514984	123514984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014253.3	-1	reviewed	p.K2527T	0.999	170	0%	25	64%	0	-	possibly_damaging(0.943)	tolerated(0.24)	neutral(0.425)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123526178	123526178	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014253.3	-1	reviewed	p.L1797	0.989	375	0%	120	48.3%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123538944	123538944	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014253.3	-1	reviewed	p.I1769	0.011	365	0%	120	39.2%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123556299	123556299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014253.3	-1	reviewed	p.L1425I	1.000	134	0%	39	41%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_N2O_reductase_N,superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	123663721	123663721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014253.3	-1	reviewed	p.D922Y	1.000	237	0%	38	21.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123785783	123785783	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014253.3	-1	reviewed	p.F520	0.945	353	0%	77	40.3%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123838997	123838997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014253.3	-1	reviewed	p.P294L	1.000	173	0%	32	25%	0	-	benign(0.032)	tolerated(0.53)	neutral(0.009)	HMMPfam_Ten_N
ACTRT1	139741	genome.wustl.edu	37	X	127185928	127185928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138289.3	-1	reviewed	p.E86D	0.963	379	0%	65	43.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMARCA1	6594	genome.wustl.edu	37	X	128621065	128621065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003069.3	-1	reviewed	p.R716I	1.000	143	0%	151	38.4%	73	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_P-loop containing nucleoside triphosphate hydrolases
OCRL	4952	genome.wustl.edu	37	X	128692647	128692647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000276.3	+1	reviewed	p.N159K	1.000	364	0%	144	40.3%	11	0%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
OCRL	4952	genome.wustl.edu	37	X	128692693	128692693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000276.3	+1	reviewed	p.R175W	0.969	274	0%	121	49.6%	7	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
OCRL	4952	genome.wustl.edu	37	X	128696671	128696671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000276.3	+1	reviewed	p.E384D	1.000	468	0%	118	35.6%	17	0%	possibly_damaging(0.583)	tolerated(0.06)	deleterious(0.523)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
OCRL	4952	genome.wustl.edu	37	X	128723882	128723882	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000276.3	+1	reviewed	p.R844*	1.000	315	0%	101	14.9%	12	8.3%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
XPNPEP2	7512	genome.wustl.edu	37	X	128879181	128879181	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_003399.5	+1	reviewed	p.N79	0.714	416	0.2%	143	49%	0	-	-	-	-	superfamily_SSF53092
ZDHHC9	51114	genome.wustl.edu	37	X	128948665	128948665	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001008222.2	-1	reviewed	p.V198	1.000	375	0%	193	48.2%	46	97.8%	-	-	-	NULL
UTP14A	10813	genome.wustl.edu	37	X	129055510	129055510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006649.3	+1	reviewed	p.K432T	0.002	81	0%	118	39.8%	34	0%	possibly_damaging(0.767)	deleterious(0.04)	deleterious(0.633)	HMMPfam_Utp14
UTP14A	10813	genome.wustl.edu	37	X	129058980	129058980	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_006649.3	+1	reviewed	p.E520*	0.034	83	0%	122	37.7%	25	0%	-	-	-	HMMPfam_Utp14
BCORL1	63035	genome.wustl.edu	37	X	129139268	129139268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_021946.3	+1	reviewed	p.R21C	1.000	138	0%	43	32.6%	7	14.2%	unknown(0)	deleterious(0)	-	NULL
AIFM1	9131	genome.wustl.edu	37	X	129270076	129270076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004208.3	-1	reviewed	p.D417Y	1.000	153	0%	47	44.7%	153	0%	benign(0.395)	deleterious(0.04)	deleterious(0.476)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
ZNF280C	55609	genome.wustl.edu	37	X	129370577	129370577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017666.4	-1	validated	p.S177Y	0.003	239	0%	178	43.3%	3	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ENOX2	10495	genome.wustl.edu	37	X	129813519	129813519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182314.1	-1	reviewed	p.S182P	1.000	223	0%	58	41.4%	10	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ENOX2	10495	genome.wustl.edu	37	X	129837098	129837098	+	Silent	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_182314.1	-1	reviewed	p.L60	1.000	166	0%	33	39.4%	5	0%	-	-	-	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130218321	130218321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_144967.3	+1	validated	p.P230S	1.000	197	0%	65	41.5%	0	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	superfamily_GTPase activation domain GAP
IGSF1	3547	genome.wustl.edu	37	X	130415776	130415776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001555.4	-1	reviewed	p.F463L	0.104	343	0%	108	47.2%	0	-	possibly_damaging(0.882)	tolerated(0.83)	neutral(0.345)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IGSF1	3547	genome.wustl.edu	37	X	130416550	130416550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001555.4	-1	reviewed	p.D372N	0.000	358	0%	140	42.9%	0	-	benign(0.079)	tolerated(0.46)	neutral(0.018)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OR13H1	347468	genome.wustl.edu	37	X	130678421	130678421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004486.1	+1	provisional	p.A125V	0.996	852	0%	73	41.1%	0	-	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	HMMPfam_7tm_1,superfamily_SSF81321
OR13H1	347468	genome.wustl.edu	37	X	130678858	130678858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001004486.1	+1	provisional	p.K271E	0.999	356	0%	57	15.8%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_7tm_1,superfamily_SSF81321
MST4	51765	genome.wustl.edu	37	X	131188717	131188717	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016542.3	+1	reviewed	p.S34*	1.000	138	0%	26	50%	4	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
MST4	51765	genome.wustl.edu	37	X	131188891	131188891	+	Splice_Site	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016542.3	+1	reviewed	e2+2	1.000	89	0%	20	35%	0	-	-	-	-	-
FRMD7	90167	genome.wustl.edu	37	X	131218570	131218570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_194277.2	-1	reviewed	p.K230T	1.000	178	0%	102	12.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_C,superfamily_SSF50729
ENSG00000206900	0	genome.wustl.edu	37	X	131714206	131714206	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384173	-1	novel	NULL	0.001	169	0%	56	39.3%	0	-	-	-	-	-
HS6ST2	90161	genome.wustl.edu	37	X	131762882	131762882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001077188.1	-1	reviewed	p.D436G	1.000	189	0%	33	75.8%	3	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_HS6ST
USP26	83844	genome.wustl.edu	37	X	132159805	132159805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_031907.1	-1	reviewed	p.R815I	0.000	463	0%	125	12%	0	-	benign(0.179)	deleterious(0.01)	neutral(0.422)	HMMPfam_UCH,superfamily_Cysteine proteinases
TFDP3	51270	genome.wustl.edu	37	X	132351297	132351297	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016521.2	-1	reviewed	p.E331*	0.998	234	0%	93	12.9%	0	-	-	-	-	HMMPfam_DP
TFDP3	51270	genome.wustl.edu	37	X	132351446	132351446	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_016521.2	-1	reviewed	p.K281T	1.000	265	0.4%	156	53.8%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_DP
GPC4	2239	genome.wustl.edu	37	X	132437269	132437269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001448.2	-1	reviewed	p.I465F	1.000	235	0%	110	12.7%	64	0%	possibly_damaging(0.532)	deleterious(0.01)	deleterious(0.586)	HMMPfam_Glypican
GPC4	2239	genome.wustl.edu	37	X	132458453	132458453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001448.2	-1	reviewed	p.V144A	0.008	90	0%	52	50%	28	85.7%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_Glypican
GPC3	2719	genome.wustl.edu	37	X	132670253	132670253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004484.3	-1	reviewed	p.E548K	0.680	704	0%	114	49.1%	9	0%	benign(0.105)	deleterious(0)	neutral(0.453)	HMMPfam_Glypican
GPC3	2719	genome.wustl.edu	37	X	132826499	132826499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004484.3	-1	reviewed	p.S397Y	1.000	110	0%	38	26.3%	4	0%	possibly_damaging(0.928)	tolerated(0.08)	deleterious(0.675)	HMMPfam_Glypican
FAM122C	159091	genome.wustl.edu	37	X	133981412	133981412	+	Splice_Site	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138819.3	+1	validated	e6-1	0.555	98	0%	138	37%	0	-	-	-	-	-
MOSPD1	56180	genome.wustl.edu	37	X	134033118	134033118	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_019556.1	-1	provisional	e2+2	1.000	71	0%	97	45.4%	0	-	-	-	-	-
ENSG00000184785	0	genome.wustl.edu	37	X	134125311	134125311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000330288	+1	known	p.K140N	0.001	83	0%	31	41.9%	1	0%	benign(0.012)	tolerated(0.17)	neutral(0.059)	NULL
FAM127A	8933	genome.wustl.edu	37	X	134166537	134166537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001078171.1	+1	validated	p.E42K	1.000	151	0%	36	13.9%	195	0%	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	NULL
ZNF449	203523	genome.wustl.edu	37	X	134481500	134481500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000370761	+1	known	p.D153Y	0.000	28	0%	22	50%	0	-	possibly_damaging(0.741)	tolerated(0.09)	deleterious(0.568)	NULL
ZNF449	203523	genome.wustl.edu	37	X	134494640	134494640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_152695.5	+1	reviewed	p.R399I	1.000	80	0%	30	36.7%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC644717	644717	genome.wustl.edu	37	X	134807871	134807871	+	Missense_Mutation	SNP	C	C	A	rs142172791	by1000genomes	TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343850.1	-1	model	p.R552I	0.997	20	0%	49	40.8%	0	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134808474	134808474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	XM_002343850.1	-1	model	p.S474Y	0.044	59	0%	47	44.7%	0	-	-	-	-	NULL
SAGE1	55511	genome.wustl.edu	37	X	134992248	134992248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018666.2	+1	reviewed	p.D595N	0.000	205	0%	117	48.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
SAGE1	55511	genome.wustl.edu	37	X	134995028	134995028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018666.2	+1	reviewed	p.R896I	0.000	77	0%	90	47.8%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
MAP7D3	79649	genome.wustl.edu	37	X	135304594	135304594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024597.3	-1	reviewed	p.E749K	0.025	272	0%	173	42.2%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
GPR112	139378	genome.wustl.edu	37	X	135405539	135405539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153834.3	+1	reviewed	p.T225A	0.001	136	0%	45	42.2%	0	-	benign(0.012)	deleterious(0.01)	neutral(0.406)	superfamily_ConA_like_lec_gl
GPR112	139378	genome.wustl.edu	37	X	135428664	135428664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153834.3	+1	reviewed	p.F933L	0.080	167	0%	13	53.8%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	NULL
GPR112	139378	genome.wustl.edu	37	X	135428994	135428994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153834.3	+1	reviewed	p.F1043L	0.008	991	0%	33	48.5%	0	-	possibly_damaging(0.574)	deleterious(0)	deleterious(0.641)	NULL
GPR112	139378	genome.wustl.edu	37	X	135429708	135429708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153834.3	+1	reviewed	p.K1281N	0.000	241	0%	31	29%	0	-	possibly_damaging(0.63)	deleterious(0.04)	deleterious(0.569)	NULL
GPR112	139378	genome.wustl.edu	37	X	135435503	135435503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153834.3	+1	reviewed	p.S2277Y	0.653	461	0%	177	45.2%	0	-	possibly_damaging(0.49)	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135453580	135453580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_153834.3	+1	reviewed	p.I2497R	0.954	293	0%	74	16.2%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
BRS3	680	genome.wustl.edu	37	X	135572510	135572510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001727.1	+1	validated	p.S218Y	1.000	75	0%	79	49.4%	0	-	possibly_damaging(0.455)	deleterious(0.02)	deleterious(0.532)	HMMPfam_7tm_1,superfamily_SSF81321
HTATSF1	27336	genome.wustl.edu	37	X	135581922	135581922	+	Silent	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014500.4	+1	reviewed	p.R118	1.000	56	0%	102	43.1%	58	0%	-	-	-	NULL
HTATSF1	27336	genome.wustl.edu	37	X	135586595	135586595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_014500.4	+1	reviewed	p.K269N	1.000	144	0%	56	44.6%	77	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_RRM,superfamily_SSF54928
CD40LG	959	genome.wustl.edu	37	X	135736565	135736565	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000074.2	+1	reviewed	p.E108*	0.983	359	0%	96	45.8%	0	-	-	-	-	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135751652	135751652	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004840.2	-1	reviewed	p.E727*	1.000	444	0%	186	41.4%	2	0%	-	-	-	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135790903	135790903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004840.2	-1	reviewed	p.L285S	0.972	227	0.4%	88	11.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF6	9459	genome.wustl.edu	37	X	135795435	135795435	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004840.2	-1	reviewed	p.N276T	1.000	297	0%	251	45.8%	0	-	benign(0.01)	tolerated(0.16)	neutral(0.060)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
SNORD61	26787	genome.wustl.edu	37	X	135961422	135961422	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_002735.1	-1	validated	NULL	1.000	78	0%	182	39%	0	-	-	-	-	-
FGF13	2258	genome.wustl.edu	37	X	137793106	137793106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004114.3	-1	reviewed	p.E20D	1.000	138	0%	80	43.8%	0	-	benign(0.002)	tolerated(0.97)	-	NULL
F9	2158	genome.wustl.edu	37	X	138643994	138643994	+	Nonsense_Mutation	SNP	C	C	T	rs137852261		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000133.3	+1	reviewed	p.R384*	0.749	247	0%	90	48.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ATP11C	286410	genome.wustl.edu	37	X	138813830	138813830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173694.4	-1	validated	p.E1128K	1.000	163	0%	50	52%	7	100%	benign(0.375)	deleterious(0)	deleterious(0.564)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138856893	138856893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173694.4	-1	validated	p.K727N	0.998	347	0%	143	48.3%	5	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	superfamily_HAD-like
ATP11C	286410	genome.wustl.edu	37	X	138869345	138869345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173694.4	-1	validated	p.K530Q	1.000	242	0%	162	40.1%	5	0%	benign(0.045)	tolerated(0.46)	neutral(0.015)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP11C	286410	genome.wustl.edu	37	X	138878611	138878611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173694.4	-1	validated	p.D346N	1.000	78	0%	28	42.9%	0	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138879362	138879362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173694.4	-1	validated	p.K330N	1.000	299	0%	94	29.8%	2	0%	possibly_damaging(0.943)	tolerated(0.37)	neutral(0.407)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138901560	138901560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173694.4	-1	validated	p.K61N	1.000	71	0%	61	39.3%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CXorf66	347487	genome.wustl.edu	37	X	139038863	139038863	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013403.2	-1	validated	p.K93T	0.002	311	0%	157	15.9%	0	-	possibly_damaging(0.936)	deleterious(0.02)	deleterious(0.764)	NULL
CXorf66	347487	genome.wustl.edu	37	X	139047631	139047631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001013403.2	-1	validated	p.L9F	0.000	415	0%	172	48.8%	0	-	possibly_damaging(0.45)	tolerated(0.38)	neutral(0.165)	NULL
SOX3	6658	genome.wustl.edu	37	X	139586875	139586875	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005634.2	-1	reviewed	p.A117	0.028	17	0%	15	46.7%	0	-	-	-	-	NULL
CDR1	1038	genome.wustl.edu	37	X	139866337	139866337	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004065.2	-1	reviewed	p.E65D	0.837	321	0%	95	43.2%	0	-	possibly_damaging(0.93)	tolerated(0.18)	neutral(0.432)	NULL
CDR1	1038	genome.wustl.edu	37	X	139866495	139866495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004065.2	-1	reviewed	p.V13I	0.000	346	0.3%	105	56.2%	0	-	benign(0.009)	tolerated(0.14)	neutral(0.250)	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140983220	140983220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000448920	+1	known	p.D111N	0.001	135	0%	35	34.3%	0	-	unknown(0)	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140985560	140985560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_138702.1	+1	reviewed	p.A625V	0.010	133	0%	37	45.9%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140994164	140994164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005462.4	+1	reviewed	p.R325I	0.008	526	0%	324	38.3%	0	-	unknown(0)	tolerated(0.08)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140994794	140994794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005462.4	+1	reviewed	p.S535I	0.223	213	0%	117	12.8%	0	-	unknown(0)	deleterious(0)	-	NULL
SPANXN3	139067	genome.wustl.edu	37	X	142596730	142596730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009609.2	-1	validated	p.D114Y	0.000	2431	0%	146	56.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SPANXN3	139067	genome.wustl.edu	37	X	142596827	142596827	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001009609.2	-1	validated	p.I81	0.000	2993	0.1%	217	46.1%	0	-	-	-	-	HMMPfam_SPAN-X
SLITRK2	84631	genome.wustl.edu	37	X	144905393	144905393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144003.2	+1	reviewed	p.R484W	0.989	76	0%	74	74.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144905719	144905719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001144003.2	+1	reviewed	p.M592I	0.712	33	0%	38	57.9%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_L domain-like
MIR513C	100302114	genome.wustl.edu	37	X	146271252	146271252	+	RNA	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000401352	-1	known	NULL	0.012	338	0%	146	47.9%	0	-	-	-	-	-
MIR506	574511	genome.wustl.edu	37	X	146312333	146312333	+	RNA	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000384998	-1	known	NULL	0.178	659	0%	77	46.8%	0	-	-	-	-	-
FMR1	2332	genome.wustl.edu	37	X	147014240	147014240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002024.5	+1	reviewed	p.E280K	1.000	111	0%	66	56.1%	34	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FMR1	2332	genome.wustl.edu	37	X	147027072	147027072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002024.5	+1	reviewed	p.R558Q	1.000	188	0%	156	44.2%	85	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
AFF2	2334	genome.wustl.edu	37	X	147743597	147743597	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002025.3	+1	reviewed	p.E117*	1.000	310	0%	106	44.3%	0	-	-	-	-	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148037695	148037695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002025.3	+1	reviewed	p.S707Y	1.000	103	0%	69	55.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148044460	148044460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002025.3	+1	reviewed	p.S969L	0.992	118	0%	55	43.6%	0	-	possibly_damaging(0.658)	tolerated(0.06)	deleterious(0.555)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148055006	148055006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002025.3	+1	reviewed	p.E1091D	1.000	382	0%	95	40%	1	0%	possibly_damaging(0.63)	tolerated(1)	neutral(0.220)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148059915	148059915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_002025.3	+1	reviewed	p.Y1167C	1.000	321	0%	190	50.5%	1	100%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_AF-4
TMEM185A	84548	genome.wustl.edu	37	X	148685709	148685709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_032508.2	-1	reviewed	p.L149I	1.000	103	0%	99	51.5%	21	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Tmemb_185A
MAGEA11	4110	genome.wustl.edu	37	X	148797734	148797734	+	Silent	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005366.4	+1	reviewed	p.G196	0.005	71	0%	48	47.9%	0	-	-	-	-	NULL
MAGEA11	4110	genome.wustl.edu	37	X	148797858	148797858	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005366.4	+1	reviewed	p.R238*	0.003	115	0%	98	46.9%	0	-	-	-	-	HMMPfam_MAGE
MAMLD1	10046	genome.wustl.edu	37	X	149638113	149638113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005491.3	+1	reviewed	p.D90Y	0.989	71	0%	34	55.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MTM1	4534	genome.wustl.edu	37	X	149764968	149764968	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000252.2	+1	reviewed	p.R24*	0.929	433	0%	79	39.2%	3	0%	-	-	-	NULL
MTM1	4534	genome.wustl.edu	37	X	149814292	149814292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000252.2	+1	reviewed	p.S272Y	0.029	356	0%	28	67.9%	7	100%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Myotub-related,superfamily_SSF52799
PASD1	139135	genome.wustl.edu	37	X	150840810	150840810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_173493.2	+1	reviewed	p.K531N	0.001	237	0.4%	87	50.6%	0	-	unknown(0)	deleterious(0)	-	NULL
GABRE	2564	genome.wustl.edu	37	X	151143072	151143072	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004961.3	-1	reviewed	p.L9H	0.003	54	0%	17	58.8%	0	-	unknown(0)	-	-	NULL
GABRA3	2556	genome.wustl.edu	37	X	151336808	151336808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000808.3	-1	reviewed	p.K457N	0.997	564	0%	96	36.5%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA3	2556	genome.wustl.edu	37	X	151514105	151514105	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000808.3	-1	reviewed	p.I70	1.000	187	0%	12	50%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRQ	55879	genome.wustl.edu	37	X	151814012	151814012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_018558.2	+1	reviewed	p.S88Y	0.999	439	0.2%	229	41.5%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
MAGEA6	4105	genome.wustl.edu	37	X	151870228	151870228	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_005363.2	+1	reviewed	p.E306	0.001	212	0%	181	45.3%	0	-	-	-	-	NULL
PNMA5	114824	genome.wustl.edu	37	X	152159629	152159629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001103150.1	-1	validated	p.E172K	0.527	77	0%	46	43.5%	0	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	NULL
MAGEA1	4100	genome.wustl.edu	37	X	152482797	152482797	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_004988.4	-1	reviewed	p.R72*	0.000	58	0%	72	40.3%	0	-	-	-	-	NULL
ZFP92	139735	genome.wustl.edu	37	X	152684246	152684246	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001136273.1	+1	validated	p.L50*	0.039	68	0%	156	46.2%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
HAUS7	55559	genome.wustl.edu	37	X	152722093	152722093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_017518.6	-1	reviewed	p.E165K	0.000	40	0%	29	44.8%	30	0%	probably_damaging(0.973)	tolerated(0.34)	neutral(0.438)	NULL
DUSP9	1852	genome.wustl.edu	37	X	152915045	152915045	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000433144	+1	known	p.S215L	0.201	18	0%	29	51.7%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
L1CAM	3897	genome.wustl.edu	37	X	153133528	153133528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000425.3	-1	reviewed	p.D585N	0.999	49	0%	37	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ENSG00000196987	0	genome.wustl.edu	37	X	153152430	153152430	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000357566	+1	known	p.R104*	0.000	43	2.3%	29	44.8%	0	-	-	-	-	NULL
AVPR2	554	genome.wustl.edu	37	X	153171602	153171602	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000054.4	+1	reviewed	p.F214	0.994	78	0%	36	52.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGAP4	393	genome.wustl.edu	37	X	153185024	153185024	+	Silent	SNP	A	A	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000418750	-1	known	p.S114P	0.004	22	0%	20	50%	0	-	-	-	-	NULL
OPN1MW2	728458	genome.wustl.edu	37	X	153490384	153490384	+	Silent	SNP	C	C	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001048181.2	+1	reviewed	p.F40	0.943	156	0%	32	50%	0	-	-	-	-	superfamily_SSF81321
TKTL1	8277	genome.wustl.edu	37	X	153524338	153524338	+	Silent	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_012253.3	+1	validated	p.T42	0.001	170	0%	69	46.4%	1	0%	-	-	-	superfamily_Thiamin diphosphate-binding fold (THDP-binding)
G6PD	2539	genome.wustl.edu	37	X	153762348	153762348	+	Silent	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000402.3	-1	reviewed	p.I254	0.998	46	0%	63	39.7%	134	0%	-	-	-	HMMPfam_G6PD_C,superfamily_SSF55347
IKBKG	8517	genome.wustl.edu	37	X	153780303	153780303	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001099856.2	+1	reviewed	p.E97A	0.992	35	0%	26	38.5%	35	0%	possibly_damaging(0.675)	tolerated(0.15)	deleterious(0.480)	NULL
GAB3	139716	genome.wustl.edu	37	X	153924241	153924241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081573.1	-1	reviewed	p.F494C	0.994	245	0%	161	41.6%	0	-	benign(0.159)	tolerated(0.06)	neutral(0.337)	NULL
GAB3	139716	genome.wustl.edu	37	X	153927748	153927748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081573.1	-1	reviewed	p.S389I	0.007	87	0%	53	26.4%	0	-	possibly_damaging(0.906)	tolerated(0.18)	neutral(0.415)	NULL
GAB3	139716	genome.wustl.edu	37	X	153928296	153928296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001081573.1	-1	reviewed	p.R370W	1.000	206	0.5%	112	37.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DKC1	1736	genome.wustl.edu	37	X	153997467	153997467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_001363.3	+1	reviewed	p.V266A	0.982	122	0%	137	48.9%	115	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	superfamily_PsdUridine_synth_cat_dom
SNORA56	677835	genome.wustl.edu	37	X	154003309	154003309	+	RNA	SNP	G	G	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NR_002984.1	+1	reviewed	NULL	0.719	23	0%	39	51.3%	2	0%	-	-	-	-
F8	2157	genome.wustl.edu	37	X	154225261	154225261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_000132.3	-1	reviewed	p.W125C	1.000	141	0.7%	55	47.3%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Cupredoxins
MTCP1NB	100272147	genome.wustl.edu	37	X	154290194	154290194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	ENST00000369479	-1	known	p.K44T	1.000	223	0%	114	45.6%	64	0%	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_DUF1903,superfamily_p8-MTCP1
BRCC3	79184	genome.wustl.edu	37	X	154327609	154327609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_024332.2	+1	reviewed	p.D190Y	0.998	203	0%	46	41.3%	7	0%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
RAB39B	116442	genome.wustl.edu	37	X	154490101	154490101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A0J0-01A-11D-A117-09	TCGA-AX-A0J0-10A-02X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ebc8a1db-78e2-49cb-826f-e5dca3fc61be	e45e1020-fdd5-46b1-805f-2b7b8ae6dcab	NM_171998.2	-1	reviewed	p.R210I	1.000	183	0%	79	53.2%	1	0%	possibly_damaging(0.708)	tolerated(0.08)	deleterious(0.555)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
