Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
GBP1	2633	genome.wustl.edu	37	1	89528913	89528913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_002053.2	-1	validated	p.A2E	0.101	227	0%	180	36.7%	-	-	probably_damaging(0.968)	tolerated(0.17)	deleterious(0.469)	NULL
TRAF5	7188	genome.wustl.edu	37	1	211545736	211545736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001033910.2	+1	reviewed	p.G456R	1.000	246	0%	290	39.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
FMN2	56776	genome.wustl.edu	37	1	240371223	240371223	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_020066.4	+1	validated	p.P1037	0.004	11	0%	11	36.4%	-	-	-	-	-	HMMSmart_FH2,HMMPfam_Drf_FH1
ACVR1	90	genome.wustl.edu	37	2	158630626	158630626	+	Missense_Mutation	SNP	C	C	T	rs121912678		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001105.4	-1	reviewed	p.R206H	1.000	328	0%	299	37.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like
LRP2	4036	genome.wustl.edu	37	2	170081881	170081882	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_004525.2	-1	reviewed	p.L1826fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
PLCL1	5334	genome.wustl.edu	37	2	198948824	198948824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_006226.3	+1	validated	p.G97R	1.000	267	0%	247	40.1%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ERBB4	2066	genome.wustl.edu	37	2	212543781	212543781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_005235.2	-1	reviewed	p.D540N	1.000	68	0%	92	41.3%	-	-	benign(0.009)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
WDFY3	23001	genome.wustl.edu	37	4	85600322	85600322	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_014991.4	-1	reviewed	p.D3299	0.028	53	0%	26	61.5%	-	-	-	-	-	superfamily_WD40 repeat-like
MMRN1	22915	genome.wustl.edu	37	4	90856506	90856506	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_007351.2	+1	reviewed	p.M559L	0.991	147	0%	115	40%	-	-	benign(0.059)	tolerated(0.33)	neutral(0.028)	NULL
BMPR1B	658	genome.wustl.edu	37	4	96051103	96051103	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001203.2	+1	reviewed	p.E226*	1.000	224	0%	202	40.6%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SPOCK3	50859	genome.wustl.edu	37	4	168155291	168155292	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_016950.2	-1	validated	p.A12fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589562	67589562	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_181523.1	+1	reviewed	p.I442S	1.000	117	0%	109	47.7%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589620	67589620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_181523.1	+1	reviewed	p.E462fs	0.234	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589622	67589623	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_181523.1	+1	reviewed	p.E462fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SLC23A1	9963	genome.wustl.edu	37	5	138716569	138716569	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_152685.3	-1	reviewed	p.P105	0.009	12	0%	22	31.8%	-	-	-	-	-	HMMPfam_Xan_ur_permease
TSPO2	222642	genome.wustl.edu	37	6	41010878	41010878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001010873.2	+1	validated	p.A52S	0.001	258	0%	178	47.8%	-	-	benign(0.121)	tolerated(0.13)	neutral(0.262)	HMMPfam_TspO_MBR
BAZ1B	9031	genome.wustl.edu	37	7	72903688	72903688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_032408.3	-1	validated	p.R243C	1.000	125	0%	132	43.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC25A40	55972	genome.wustl.edu	37	7	87485696	87485696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000429674	-1	known	p.R36C	0.004	248	0%	220	45.5%	-	-	unknown(0)	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100344204	100344204	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_003386.1	+1	reviewed	p.G270	0.186	67	0%	57	36.8%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
SHB	6461	genome.wustl.edu	37	9	37955915	37955915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_003028.2	-1	validated	p.E397D	0.960	55	0%	49	40.8%	-	-	possibly_damaging(0.837)	tolerated(0.07)	deleterious(0.639)	superfamily_SH2 domain
BSPRY	54836	genome.wustl.edu	37	9	116132395	116132395	+	Silent	SNP	C	C	G	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_017688.2	+1	validated	p.A394	0.169	91	0%	86	47.7%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RET	5979	genome.wustl.edu	37	10	43610086	43610086	+	Missense_Mutation	SNP	G	G	A	rs184498773	by1000genomes	TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_020975.4	+1	reviewed	p.A680T	0.888	50	0%	54	46.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PTEN	5728	genome.wustl.edu	37	10	89692892	89692892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000371953	+1	known	p.A126S	1.000	382	0%	383	39.2%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720817	89720817	+	Missense_Mutation	SNP	A	A	C	rs121913291		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000371953	+1	known	p.N323T	1.000	414	0%	461	41%	-	-	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89725043	89725043	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000371953	+1	known	e9-1	1.000	103	0%	99	47.5%	-	-	-	-	-	-
FGFR2	2263	genome.wustl.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	rs121913476		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_022970.3	-1	reviewed	p.N550K	1.000	51	0%	76	32.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
OR5D16	390144	genome.wustl.edu	37	11	55606741	55606741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001005496.1	+1	provisional	p.G172C	0.001	305	0%	290	45.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
FAM111A	63901	genome.wustl.edu	37	11	58916408	58916408	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001142519.1	+1	validated	p.I21	0.000	81	0%	127	38.6%	-	-	-	-	-	NULL
TAS2R30	259293	genome.wustl.edu	37	12	11286214	11286214	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001097643.1	-1	provisional	p.Q210	0.017	655	0%	539	38.2%	-	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
KIAA1467	57613	genome.wustl.edu	37	12	13220149	13220149	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_020853.1	+1	validated	p.S354*	0.959	125	0%	123	38.2%	-	-	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116446900	116446900	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_015335.3	-1	validated	p.R440*	0.995	169	0%	185	42.7%	-	-	-	-	-	NULL
MLNR	2862	genome.wustl.edu	37	13	49796255	49796255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000398307	+1	known	p.A378T	0.029	186	0%	138	46.4%	-	-	unknown(0)	-	-	NULL
TRIM9	114088	genome.wustl.edu	37	14	51561057	51561057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_015163.5	-1	reviewed	p.R201W	1.000	33	0%	37	45.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00336
DIO3	1735	genome.wustl.edu	37	14	102028448	102028448	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001362.3	+1	reviewed	p.D179	1.000	41	0%	20	50%	-	-	-	-	-	HMMPfam_T4_deiodinase
TECPR2	9895	genome.wustl.edu	37	14	102904460	102904460	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_014844.3	+1	validated	p.L832	1.000	104	0%	74	54.1%	-	-	-	-	-	NULL
CDAN1	146059	genome.wustl.edu	37	15	43028233	43028233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_138477.2	-1	reviewed	p.E205K	1.000	59	0%	32	56.2%	-	-	probably_damaging(0.963)	tolerated(0.22)	neutral(0.448)	NULL
XYLT1	64131	genome.wustl.edu	37	16	17232374	17232374	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_022166.3	-1	reviewed	p.T534	0.946	72	0%	64	48.4%	-	-	-	-	-	HMMPfam_Branch
SLC12A3	6559	genome.wustl.edu	37	16	56926062	56926062	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_000339.2	+1	reviewed	p.V812	0.092	74	0%	68	47.1%	-	-	-	-	-	NULL
ENSG00000247185	0	genome.wustl.edu	37	17	29096748	29096749	+	RNA	INS	-	-	AT	rs59722699	byCluster;by1000genomes	TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000499895	+1	known	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
RGS9	8787	genome.wustl.edu	37	17	63164391	63164391	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_003835.3	+1	reviewed	p.R192	0.999	67	0%	41	41.5%	-	-	-	-	-	NULL
HELZ	9931	genome.wustl.edu	37	17	65105571	65105571	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_014877.3	-1	validated	p.Q1384*	1.000	214	0.5%	195	45.1%	-	-	-	-	-	NULL
EXOC7	23265	genome.wustl.edu	37	17	74097902	74097902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001145297.2	-1	validated	p.E57K	1.000	104	0%	112	45.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ENSG00000188314	0	genome.wustl.edu	37	19	9346183	9346183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000344049	+1	known	p.R17W	0.999	172	0%	182	47.8%	-	-	benign(0.101)	deleterious(0)	neutral(0.452)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
LDLR	3949	genome.wustl.edu	37	19	11213431	11213431	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_000527.3	+1	reviewed	p.D94	1.000	81	0%	110	39.1%	-	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
ZNF568	374900	genome.wustl.edu	37	19	37413737	37413737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_198539.2	+1	validated	p.M22T	0.345	54	0%	73	41.1%	-	-	benign(0.008)	-	-	NULL
TSKS	60385	genome.wustl.edu	37	19	50248524	50248524	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_021733.1	-1	reviewed	p.R374	0.610	20	0%	30	60%	-	-	-	-	-	NULL
ZNF304	57343	genome.wustl.edu	37	19	57867860	57867860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_020657.2	+1	validated	p.S208F	0.006	217	0%	202	43.1%	-	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	superfamily_C2H2 and C2HC zinc fingers
TMEM74B	55321	genome.wustl.edu	37	20	1161829	1161829	+	Missense_Mutation	SNP	C	C	T	rs149321298	by1000genomes	TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_018354.1	-1	provisional	p.R145H	0.998	103	0%	104	48.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SULF2	55959	genome.wustl.edu	37	20	46295005	46295005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_018837.3	-1	validated	p.R602W	1.000	39	0%	62	29%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Alkaline phosphatase-like
KRTAP22-1	337979	genome.wustl.edu	37	21	31973469	31973469	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_181620.1	+1	provisional	p.G10	0.000	305	0%	331	44.7%	-	-	-	-	-	NULL
TRMT2A	27037	genome.wustl.edu	37	22	20100501	20100501	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_022727.4	-1	validated	p.A527P	0.999	73	0%	57	38.6%	-	-	possibly_damaging(0.661)	deleterious(0.03)	deleterious(0.598)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SMARCB1	6598	genome.wustl.edu	37	22	24135794	24135794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_003073.3	+1	reviewed	p.S94L	0.999	134	0%	136	44.1%	-	-	benign(0.389)	tolerated(0.64)	neutral(0.128)	NULL
LIMK2	3985	genome.wustl.edu	37	22	31658666	31658666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001031801.1	+1	reviewed	p.R227Q	0.996	37	0%	45	51.1%	-	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
CYTH4	27128	genome.wustl.edu	37	22	37688718	37688718	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_013385.3	+1	reviewed	p.R26	0.994	36	0%	39	48.7%	-	-	-	-	-	NULL
FAM9A	171482	genome.wustl.edu	37	X	8766463	8766463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_174951.3	-1	validated	p.E93G	0.003	299	0.3%	347	16.1%	-	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
ZFX	7543	genome.wustl.edu	37	X	24229432	24229432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_003410.3	+1	reviewed	p.R786Q	1.000	449	0.2%	436	40.6%	-	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MTMR8	55613	genome.wustl.edu	37	X	63488655	63488655	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	ENST00000442913	-1	known	p.W429*	0.000	174	0%	203	44.3%	-	-	probably_damaging(0.994)	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76939716	76939716	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_000489.3	-1	reviewed	p.S344	1.000	303	0%	371	48.2%	-	-	-	-	-	NULL
H2BFWT	158983	genome.wustl.edu	37	X	103268036	103268036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_001002916.3	-1	reviewed	p.R66H	0.000	50	0%	58	43.1%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Histone-fold
BCORL1	63035	genome.wustl.edu	37	X	129147887	129147887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0K1-01A-11W-A062-09	TCGA-B5-A0K1-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f497eb2e-0360-447d-9c8b-06a00a1d7a5e	7d1ba552-2cec-468b-ab1f-2e6dfa5e231a	NM_021946.3	+1	reviewed	p.P380L	0.271	25	0%	14	57.1%	-	-	unknown(0)	deleterious(0)	-	NULL
