Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
FAM213B	127281	genome.wustl.edu	37	1	2520386	2520386	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152371.2	+1	predicted	p.F162	0.638	13	0.000	7	0.714	-	-	-	-	-	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9833382	9833382	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001009566.1	-1	validated	p.L54	0.195	220	0%	180	45%	-	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PTCHD2	57540	genome.wustl.edu	37	1	11562022	11562022	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020780.1	+1	validated	p.L325V	1.000	35	0%	21	33.3%	-	-	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	HMMPfam_Patched
CLCN6	1185	genome.wustl.edu	37	1	11896029	11896029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001286.2	+1	reviewed	p.R600K	1.000	90	0%	59	37.3%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	superfamily_CBS-domain
NPPA	4878	genome.wustl.edu	37	1	11907306	11907306	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006172.3	-1	reviewed	p.S105C	0.134	96	0%	54	35.2%	-	-	possibly_damaging(0.819)	deleterious(0.05)	deleterious(0.655)	HMMPfam_ANP
MFN2	9927	genome.wustl.edu	37	1	12056280	12056280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001127660.1	+1	reviewed	p.G127S	1.000	138	0%	94	43.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynamin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
VPS13D	55187	genome.wustl.edu	37	1	12393322	12393322	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015378.2	+1	reviewed	p.S2776C	1.000	76	0%	114	30.7%	-	-	benign(0.327)	deleterious(0.05)	neutral(0.448)	NULL
SPEN	23013	genome.wustl.edu	37	1	16260688	16260688	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015001.2	+1	reviewed	p.V2651	1.000	64	0%	56	41.1%	-	-	-	-	-	NULL
NECAP2	55707	genome.wustl.edu	37	1	16775627	16775627	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001145277.1	+1	reviewed	p.Q140H	1.000	217	0%	129	44.2%	-	-	benign(0.394)	tolerated(0.11)	neutral(0.398)	HMMPfam_DUF1681
NBPF1	55672	genome.wustl.edu	37	1	16901184	16901184	+	Silent	SNP	C	C	T	rs11580592	byCluster;byHapMap	TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017940.3	-1	predicted	p.E732	0.017	556	0%	921	12.2%	-	-	-	-	-	HMMPfam_DUF1220
PADI4	23569	genome.wustl.edu	37	1	17690064	17690064	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012387.2	+1	reviewed	p.F602	0.982	41	0%	20	50%	-	-	-	-	-	HMMPfam_PAD,superfamily_Pentein
RNF186	54546	genome.wustl.edu	37	1	20141040	20141040	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_019062.1	-1	provisional	p.I185	0.041	73	0%	42	52.4%	-	-	-	-	-	NULL
LYPLA2	11313	genome.wustl.edu	37	1	24121190	24121190	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007260.2	+1	reviewed	p.E222*	1.000	82	0%	34	11.8%	-	-	-	-	-	HMMPfam_Abhydrolase_2,superfamily_SSF53474
LDLRAP1	26119	genome.wustl.edu	37	1	25890238	25890238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015627.2	+1	reviewed	p.E235K	0.129	19	0.000	8	0.500	-	-	benign(0.004)	tolerated(0.48)	neutral(0.011)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27059260	27059260	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006015.4	+1	reviewed	p.Q633*	1.000	196	0%	175	44.6%	-	-	-	-	-	NULL
GPATCH3	63906	genome.wustl.edu	37	1	27223896	27223896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022078.2	-1	validated	p.E258Q	1.000	283	0%	206	39.8%	-	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
TRNAU1AP	54952	genome.wustl.edu	37	1	28887750	28887750	+	RNA	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NR_003109.1	+1	validated	NULL	0.999	58	0%	62	45.2%	-	-	-	-	-	-
PEF1	553115	genome.wustl.edu	37	1	32098160	32098160	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012392.3	-1	reviewed	p.K187N	1.000	95	0%	45	42.2%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
LCK	3932	genome.wustl.edu	37	1	32740500	32740500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000373564	+1	known	p.L90F	0.000	53	0%	25	40%	-	-	unknown(0)	-	-	superfamily_SH3
C1orf94	84970	genome.wustl.edu	37	1	34663001	34663001	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001134734.1	+1	validated	p.L166	0.032	30	0%	23	34.8%	-	-	-	-	-	NULL
EPHA10	284656	genome.wustl.edu	37	1	38227478	38227478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001099439.1	-1	validated	p.R150H	0.952	26	0%	17	52.9%	-	-	possibly_damaging(0.943)	tolerated(0.49)	neutral(0.398)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
MACF1	23499	genome.wustl.edu	37	1	39748865	39748865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012090.3	+1	reviewed	p.D239N	1.000	195	0%	206	34.5%	-	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
COL9A2	1298	genome.wustl.edu	37	1	40773876	40773876	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001852.3	-1	reviewed	p.P296	0.077	92	1.1%	44	20.5%	-	-	-	-	-	HMMPfam_Collagen
SLC2A1	6513	genome.wustl.edu	37	1	43396779	43396779	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006516.2	-1	reviewed	p.I71M	1.000	156	0%	100	40%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
PCSK9	255738	genome.wustl.edu	37	1	55524222	55524222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_174936.2	+1	reviewed	p.R469W	0.000	79	0%	40	40%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CACHD1	57685	genome.wustl.edu	37	1	65068581	65068581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020925.2	+1	validated	p.R117Q	1.000	344	0%	386	45.1%	-	-	benign(0.315)	tolerated(0.26)	neutral(0.133)	HMMPfam_VWA_N
RPE65	6121	genome.wustl.edu	37	1	68896848	68896848	+	Silent	SNP	C	C	T	rs62637003		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000329.2	-1	reviewed	p.L450	1.000	149	0%	232	40.5%	-	-	-	-	-	HMMPfam_RPE65
ZRANB2	9406	genome.wustl.edu	37	1	71546640	71546640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_203350.1	-1	validated	p.W13*	1.000	130	0%	119	32.8%	-	-	-	-	-	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_Znf265 first zinc-finger domain
LPHN2	23266	genome.wustl.edu	37	1	82450301	82450301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012302.2	+1	reviewed	p.S1089L	1.000	130	0%	270	41.1%	-	-	benign(0.408)	tolerated(0.37)	neutral(0.151)	HMMPfam_Latrophilin
BARHL2	343472	genome.wustl.edu	37	1	91180165	91180165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020063.1	-1	validated	p.S258R	0.975	177	0%	100	38%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
KIAA1107	23285	genome.wustl.edu	37	1	92647147	92647147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015237.2	+1	validated	p.D865N	1.000	79	0%	109	46.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DPYD	1806	genome.wustl.edu	37	1	98386453	98386453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000110.3	-1	reviewed	p.S9L	0.998	43	0%	24	33.3%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Helical_ferredxn
AMY2A	279	genome.wustl.edu	37	1	104162265	104162265	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000699.2	+1	reviewed	p.L201	0.996	553	0%	972	21.7%	-	-	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat
PHTF1	10745	genome.wustl.edu	37	1	114253010	114253010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006608.2	-1	validated	p.E379K	1.000	91	0%	72	40.3%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
NHLH2	4808	genome.wustl.edu	37	1	116380649	116380649	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001111061.1	-1	validated	p.K115	1.000	34	0%	19	36.8%	-	-	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
NBPF7	343505	genome.wustl.edu	37	1	120384184	120384184	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001047980.1	-1	predicted	p.L126	0.535	211	0%	338	40.2%	-	-	-	-	-	NULL
ANKRD34A	284615	genome.wustl.edu	37	1	145473854	145473854	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001039888.2	+1	validated	p.P176A	0.416	72	0%	52	13.5%	-	-	possibly_damaging(0.763)	tolerated(0.76)	neutral(0.284)	superfamily_Ankyrin repeat
PDZK1	5174	genome.wustl.edu	37	1	145762180	145762180	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002614.3	+1	provisional	p.L453	0.989	291	0%	676	18.2%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
FMO5	2330	genome.wustl.edu	37	1	146658627	146658627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001461.2	-1	reviewed	p.R485Q	0.999	118	0%	221	22.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FMO-like
LINGO4	339398	genome.wustl.edu	37	1	151774172	151774172	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004432.2	-1	provisional	p.Q337*	0.992	110	0%	124	30.6%	-	-	-	-	-	superfamily_SSF52058
LINGO4	339398	genome.wustl.edu	37	1	151774507	151774507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004432.2	-1	provisional	p.R225Q	0.000	49	0%	44	34.1%	-	-	probably_damaging(0.988)	tolerated(0.2)	deleterious(0.486)	superfamily_SSF52058
RORC	6097	genome.wustl.edu	37	1	151785775	151785775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005060.3	-1	reviewed	p.D372N	0.580	190	0%	231	45%	-	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
C1orf43	25912	genome.wustl.edu	37	1	154186951	154186951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001098616.1	-1	validated	p.E90K	1.000	304	0%	479	22.5%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_NICE-3
MTX1	4580	genome.wustl.edu	37	1	155182524	155182524	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000424959	+1	known	p.S194*	0.999	133	0%	149	19.5%	-	-	benign(0.084)	tolerated(0.53)	neutral(0.013)	superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_Tom37
MEF2D	4209	genome.wustl.edu	37	1	156452286	156452286	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005920.2	-1	provisional	p.L67	1.000	441	0%	486	25.7%	-	-	-	-	-	superfamily_SRF-like
NTRK1	4914	genome.wustl.edu	37	1	156843544	156843544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002529.3	+1	reviewed	p.E324K	0.996	49	0%	41	26.8%	-	-	benign(0.012)	tolerated(0.06)	neutral(0.323)	superfamily_Immunoglobulin
NTRK1	4914	genome.wustl.edu	37	1	156851254	156851254	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002529.3	+1	reviewed	p.I737	0.995	24	0%	17	23.5%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FCRL1	115350	genome.wustl.edu	37	1	157771312	157771312	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_052938.4	-1	reviewed	p.L314	0.000	83	0%	226	18.1%	-	-	-	-	-	NULL
OR10Z1	128368	genome.wustl.edu	37	1	158576883	158576883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004478.1	+1	provisional	p.A219T	0.000	54	0%	216	22.7%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158606548	158606548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003126.2	-1	reviewed	p.E1731D	0.974	73	0%	231	23.4%	-	-	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158615112	158615112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003126.2	-1	reviewed	p.E1354K	0.868	93	0%	267	20.2%	-	-	benign(0.208)	tolerated(0.07)	neutral(0.339)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
AIM2	9447	genome.wustl.edu	37	1	159035753	159035753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004833.1	-1	reviewed	p.L255F	0.003	221	0%	324	28.1%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_HIN
AIM2	9447	genome.wustl.edu	37	1	159036039	159036039	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004833.1	-1	reviewed	p.L159	0.755	147	0%	260	22.7%	-	-	-	-	-	HMMPfam_HIN
OR10J3	441911	genome.wustl.edu	37	1	159284264	159284264	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004467.1	-1	provisional	p.F62	0.982	170	0%	631	22%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10J1	26476	genome.wustl.edu	37	1	159410454	159410454	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012351.2	+1	validated	p.L302	0.997	139	0%	300	28.7%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ATP1A2	477	genome.wustl.edu	37	1	160099141	160099141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000702.3	+1	reviewed	p.R471K	0.999	164	0%	253	19.4%	-	-	benign(0)	tolerated(0.82)	neutral(0.001)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
RGS4	5999	genome.wustl.edu	37	1	163042250	163042250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001102445.2	+1	reviewed	p.S134C	1.000	120	0%	431	17.9%	-	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
RGS4	5999	genome.wustl.edu	37	1	163043393	163043393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001102445.2	+1	reviewed	p.S217L	1.000	127	0%	517	42.7%	-	-	probably_damaging(0.984)	tolerated(0.2)	deleterious(0.479)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
DCAF6	55827	genome.wustl.edu	37	1	168014287	168014287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018442.2	+1	validated	p.E637K	0.005	108	0%	178	25.3%	-	-	possibly_damaging(0.649)	tolerated(0.22)	neutral(0.270)	superfamily_WD40_like
C1orf9	51430	genome.wustl.edu	37	1	172502431	172502431	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000367723	+1	known	p.L148	0.000	30	0%	22	40.9%	-	-	-	-	-	NULL
FASLG	356	genome.wustl.edu	37	1	172634997	172634997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000639.1	+1	reviewed	p.M229I	0.998	159	0%	296	45.3%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
ASTN1	460	genome.wustl.edu	37	1	176915218	176915218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004319.1	-1	validated	p.S698F	1.000	60	0%	149	48.3%	-	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
TOR3A	64222	genome.wustl.edu	37	1	179057214	179057214	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022371.3	+1	validated	p.L270	1.000	117	0%	100	30%	-	-	-	-	-	HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases
RGSL1	353299	genome.wustl.edu	37	1	182499401	182499401	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001137669.1	+1	validated	p.A716	0.002	119	0%	327	18.3%	-	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
FAM129A	116496	genome.wustl.edu	37	1	184792789	184792789	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_052966.2	-1	validated	p.K269Q	0.999	152	0%	346	22.5%	-	-	probably_damaging(1)	tolerated(0.48)	deleterious(0.510)	NULL
HMCN1	83872	genome.wustl.edu	37	1	186072639	186072639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_031935.2	+1	reviewed	p.E3537K	1.000	113	0%	267	25.1%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ASPM	259266	genome.wustl.edu	37	1	197094248	197094248	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018136.4	-1	reviewed	p.Q1004*	1.000	256	0%	695	22.7%	-	-	-	-	-	HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
ASPM	259266	genome.wustl.edu	37	1	197112130	197112130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018136.4	-1	reviewed	p.E418K	0.002	275	0%	448	16.7%	-	-	benign(0.055)	tolerated(0.26)	neutral(0.038)	NULL
KIF21B	23046	genome.wustl.edu	37	1	200960827	200960827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017596.2	-1	provisional	p.Q804H	1.000	87	0%	72	13.9%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_WD40_like
RNPEP	6051	genome.wustl.edu	37	1	201970799	201970799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020216.3	+1	validated	p.E444K	0.946	298	0%	402	19.4%	-	-	benign(0)	tolerated(1)	-	superfamily_SSF55486
LOC100289488	100289488	genome.wustl.edu	37	1	201984579	201984579	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002342157.1	-1	model	p.Q9*	0.000	38	0%	54	25.9%	-	-	-	-	-	NULL
TMCC2	9911	genome.wustl.edu	37	1	205241216	205241216	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014858.3	+1	validated	p.L698	1.000	57	0%	65	23.1%	-	-	-	-	-	HMMPfam_Tmemb_cc2
MAPKAPK2	9261	genome.wustl.edu	37	1	206902809	206902809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032960.2	+1	reviewed	p.R185W	1.000	164	0%	200	21%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAIM3	9214	genome.wustl.edu	37	1	207087146	207087146	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001142472.1	-1	validated	p.D111H	1.000	165	0%	221	26.2%	-	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMSmart_SM00409,superfamily_Immunoglobulin
CENPF	1063	genome.wustl.edu	37	1	214825193	214825193	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016343.3	+1	reviewed	p.K2708N	0.586	176	0%	369	19.2%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
USH2A	7399	genome.wustl.edu	37	1	215821005	215821005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_206933.2	-1	reviewed	p.E4884K	0.999	71	0%	130	20.8%	-	-	probably_damaging(0.996)	tolerated(0.72)	neutral(0.463)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RAB3GAP2	25782	genome.wustl.edu	37	1	220330777	220330777	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012414.3	-1	reviewed	p.A1130	0.125	86	0%	219	19.6%	-	-	-	-	-	NULL
DNAH14	127602	genome.wustl.edu	37	1	225347047	225347047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001373.1	+1	validated	p.E1747K	0.901	460	0%	699	21.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PSEN2	5664	genome.wustl.edu	37	1	227073295	227073295	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000447.2	+1	reviewed	p.S138C	1.000	141	0%	157	24.8%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Presenilin,HMMSmart_SM00730
CDC42BPA	8476	genome.wustl.edu	37	1	227182594	227182594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003607.3	-1	reviewed	p.S1653L	0.983	54	0%	77	22.1%	-	-	possibly_damaging(0.626)	deleterious(0)	deleterious(0.662)	NULL
OBSCN	84033	genome.wustl.edu	37	1	228480483	228480483	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001098623.1	+1	reviewed	p.V3621	0.014	174	0%	224	17%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228537645	228537645	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000441106	+1	known	p.W684*	1.000	54	0%	57	19.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TRIM17	51127	genome.wustl.edu	37	1	228598869	228598869	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001024940.2	-1	reviewed	p.V178	0.052	76	0%	91	24.2%	-	-	-	-	-	NULL
NUP133	55746	genome.wustl.edu	37	1	229580721	229580721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018230.2	-1	reviewed	p.P1092A	1.000	263	0%	610	24.3%	-	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
LOC100288792	100288792	genome.wustl.edu	37	1	233145950	233145950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002342175.1	+1	model	p.E68D	0.002	2	0.000	4	1.000	-	-	-	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233161098	233161098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014801.3	-1	provisional	p.E1467K	1.000	125	0%	197	23.4%	-	-	possibly_damaging(0.808)	tolerated(0.06)	deleterious(0.627)	NULL
RYR2	6262	genome.wustl.edu	37	1	237674992	237674992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001035.2	+1	reviewed	p.R908T	1.000	122	0%	206	41.3%	-	-	possibly_damaging(0.915)	-	-	HMMPfam_RyR
RYR2	6262	genome.wustl.edu	37	1	237947507	237947507	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001035.2	+1	reviewed	p.V4165	1.000	59	0%	151	21.2%	-	-	-	-	-	NULL
CEP170	9859	genome.wustl.edu	37	1	243349584	243349584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014812.2	-1	reviewed	p.E417K	0.994	396	0.3%	760	20.3%	-	-	possibly_damaging(0.878)	deleterious(0)	deleterious(0.786)	NULL
C1orf100	200159	genome.wustl.edu	37	1	244552291	244552291	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001012970.1	+1	predicted	p.R122*	0.019	191	0%	379	19.5%	-	-	-	-	-	NULL
OR14K1	343170	genome.wustl.edu	37	1	247902042	247902042	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000283225	+1	known	p.V42	0.001	111	0%	329	25.2%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR14K1	343170	genome.wustl.edu	37	1	247902159	247902159	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000283225	+1	known	p.L81	0.000	168	0%	440	20.9%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2L8	391190	genome.wustl.edu	37	1	248112944	248112944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001001963.1	+1	provisional	p.R262K	0.302	252	0%	481	23.1%	-	-	benign(0.002)	tolerated(0.86)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L5	81466	genome.wustl.edu	37	1	248185713	248185713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000355281	+1	known	p.S155F	0.001	173	0%	491	25.5%	-	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T34	127068	genome.wustl.edu	37	1	248737909	248737909	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001001821.1	-1	provisional	p.L50	0.004	213	0%	440	20.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T27	403239	genome.wustl.edu	37	1	248813562	248813562	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001001824.1	-1	provisional	p.L208	0.000	154	0%	286	35.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MYT1L	23040	genome.wustl.edu	37	2	1842994	1842994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015025.2	-1	validated	p.E1001K	1.000	24	0%	14	50%	-	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	superfamily_SSF103637
KLF11	8462	genome.wustl.edu	37	2	10188235	10188235	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003597.4	+1	reviewed	p.Q257H	0.314	292	0%	194	37.6%	-	-	possibly_damaging(0.924)	tolerated(0.17)	neutral(0.432)	NULL
SMC6	79677	genome.wustl.edu	37	2	17851810	17851810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001142286.1	-1	validated	p.F981L	0.979	70	0%	142	36.6%	-	-	benign(0.001)	tolerated(0.8)	neutral(0.001)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
NCOA1	8648	genome.wustl.edu	37	2	24952377	24952377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003743.4	+1	reviewed	p.G965E	1.000	135	0%	138	41.3%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act
FAM59B	150946	genome.wustl.edu	37	2	26411033	26411033	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000380681	+1	known	p.L957	1.000	116	0%	47	42.6%	-	-	-	-	-	HMMPfam_SAM_1,superfamily_SAM/Pointed domain
HADHB	3032	genome.wustl.edu	37	2	26501535	26501535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000183.2	+1	reviewed	p.E166Q	1.000	290	0%	341	41.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
ZNF513	130557	genome.wustl.edu	37	2	27601433	27601433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144631.4	-1	validated	p.P234S	1.000	57	0%	26	65.4%	-	-	unknown(0)	tolerated(0.07)	-	NULL
SLC4A1AP	22950	genome.wustl.edu	37	2	27888113	27888113	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018158.2	+1	validated	p.K324	0.155	440	0%	391	41.2%	-	-	-	-	-	NULL
TTC27	55622	genome.wustl.edu	37	2	33012050	33012050	+	Splice_Site	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017735.3	+1	provisional	e16-1	1.000	125	0%	190	37.9%	-	-	-	-	-	-
DHX57	90957	genome.wustl.edu	37	2	39089347	39089347	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198963.1	-1	provisional	p.S171*	0.000	113	0%	152	41.4%	-	-	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39089410	39089410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198963.1	-1	provisional	p.P150L	0.617	152	0%	168	45.8%	-	-	possibly_damaging(0.65)	tolerated(0.12)	deleterious(0.489)	NULL
MSH6	2956	genome.wustl.edu	37	2	48028205	48028205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000179.2	+1	reviewed	p.S1028L	0.998	158	0%	180	33.9%	-	-	benign(0.067)	tolerated(0.12)	neutral(0.265)	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III
PPP1R21	129285	genome.wustl.edu	37	2	48681851	48681851	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001135629.1	+1	validated	p.L82V	0.384	178	0%	142	32.4%	-	-	benign(0.04)	tolerated(0.36)	neutral(0.022)	HMMPfam_KLRAQ
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48848035	48848035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_172311.1	+1	reviewed	p.R727W	0.979	207	0%	181	47.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFIIA,superfamily_TFIIA_helical
EHBP1	23301	genome.wustl.edu	37	2	63085585	63085585	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015252.3	+1	reviewed	p.Q227E	1.000	229	0%	235	39.6%	-	-	benign(0.124)	tolerated(1)	neutral(0.010)	NULL
SLC1A4	6509	genome.wustl.edu	37	2	65248101	65248101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003038.3	+1	validated	p.L474V	1.000	68	0%	55	43.6%	-	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_SDF
LOC100287788	100287788	genome.wustl.edu	37	2	74605078	74605078	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002342212.1	+1	model	p.C273	0.035	139	0%	136	38.2%	-	-	-	-	-	NULL
USP39	10713	genome.wustl.edu	37	2	85868137	85868137	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006590.2	+1	validated	p.F441L	1.000	150	0%	147	39.5%	-	-	possibly_damaging(0.592)	deleterious(0.01)	deleterious(0.610)	HMMPfam_UCH,superfamily_Cysteine proteinases
THNSL2	55258	genome.wustl.edu	37	2	88474265	88474265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018271.3	+1	validated	p.A111T	1.000	191	0%	160	45%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
LOC344065	344065	genome.wustl.edu	37	2	95880578	95880578	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_292895.7	+1	model	p.L282	0.000	43	0%	80	50%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SEMA4C	54910	genome.wustl.edu	37	2	97527357	97527357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017789.4	-1	validated	p.S544L	0.059	189	0%	89	33.7%	-	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
NPAS2	4862	genome.wustl.edu	37	2	101591350	101591350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002518.3	+1	reviewed	p.S409L	0.998	85	1.2%	47	53.2%	-	-	probably_damaging(0.958)	tolerated(0.09)	deleterious(0.698)	NULL
TGFBRAP1	9392	genome.wustl.edu	37	2	105892022	105892022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001142621.1	-1	validated	p.E554K	0.324	273	0%	249	30.1%	-	-	benign(0.226)	tolerated(0.07)	neutral(0.342)	NULL
ZC3H6	376940	genome.wustl.edu	37	2	113089521	113089521	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198581.2	+1	validated	p.S1009*	0.011	120	0%	142	36.6%	-	-	-	-	-	NULL
GPR17	2840	genome.wustl.edu	37	2	128408553	128408553	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005291.2	+1	validated	p.L110V	1.000	113	0%	58	48.3%	-	-	possibly_damaging(0.706)	tolerated(0.08)	deleterious(0.554)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
WDR33	55339	genome.wustl.edu	37	2	128481933	128481933	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018383.3	-1	reviewed	p.L390	1.000	146	0%	137	40.9%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
LCT	3938	genome.wustl.edu	37	2	136574936	136574936	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002299.2	-1	reviewed	p.S561C	0.972	46	0%	39	33.3%	-	-	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
MCM6	4175	genome.wustl.edu	37	2	136620179	136620179	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005915.4	-1	reviewed	p.L406	0.946	89	0%	99	40.4%	-	-	-	-	-	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZEB2	9839	genome.wustl.edu	37	2	145182432	145182432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014795.3	-1	reviewed	p.E112K	1.000	266	0%	421	39.4%	-	-	benign(0.086)	tolerated(0.06)	neutral(0.329)	NULL
GALNT5	11227	genome.wustl.edu	37	2	158152932	158152932	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014568.1	+1	provisional	p.R635T	1.000	299	0%	493	43.2%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
SCN9A	6335	genome.wustl.edu	37	2	167055799	167055799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002977.3	-1	reviewed	p.E1773K	1.000	456	0%	439	40.1%	-	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167288922	167288922	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002976.2	-1	validated	p.S833*	1.000	216	0%	423	39.5%	-	-	-	-	-	HMMPfam_Na_trans_assoc
ABCB11	8647	genome.wustl.edu	37	2	169825872	169825872	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003742.2	-1	reviewed	p.E667Q	0.000	96	0%	339	41.9%	-	-	benign(0.045)	tolerated(0.27)	neutral(0.036)	NULL
LRP2	4036	genome.wustl.edu	37	2	170103239	170103239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004525.2	-1	reviewed	p.D1056N	1.000	197	0%	193	44%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
UBR3	130507	genome.wustl.edu	37	2	170783882	170783882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_172070.3	+1	validated	p.M797I	1.000	211	0%	243	39.5%	-	-	possibly_damaging(0.737)	tolerated(0.15)	deleterious(0.510)	NULL
OLA1	29789	genome.wustl.edu	37	2	174946710	174946710	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_013341.3	-1	validated	p.L271	1.000	177	0%	258	12.4%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
NFE2L2	4780	genome.wustl.edu	37	2	178098960	178098960	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006164.3	-1	validated	p.D29H	1.000	202	0%	245	40.4%	-	-	unknown(0)	deleterious(0)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179395332	179395332	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000356127	-1	known	p.S32767*	1.000	264	0%	414	40.3%	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
COL3A1	1281	genome.wustl.edu	37	2	189861927	189861927	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000090.3	+1	reviewed	p.G600R	1.000	203	0%	265	36.6%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
ANKAR	150709	genome.wustl.edu	37	2	190559717	190559717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144708.3	+1	validated	p.I369L	1.000	136	0.7%	166	12%	-	-	benign(0.157)	tolerated(0.69)	neutral(0.016)	superfamily_Ankyrin repeat
ALS2	57679	genome.wustl.edu	37	2	202591477	202591477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020919.3	-1	reviewed	p.S1031L	1.000	115	0%	129	38%	-	-	possibly_damaging(0.918)	tolerated(0.3)	neutral(0.397)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215884470	215884470	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_173076.2	-1	reviewed	p.F446	0.824	115	0%	137	40.1%	-	-	-	-	-	NULL
PLCD4	84812	genome.wustl.edu	37	2	219486287	219486287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032726.2	+1	provisional	p.E169K	1.000	346	0%	314	43.3%	-	-	possibly_damaging(0.494)	tolerated(0.15)	neutral(0.405)	superfamily_EF-hand
CCDC108	255101	genome.wustl.edu	37	2	219890782	219890782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_194302.2	-1	provisional	p.E771Q	0.988	79	0%	46	39.1%	-	-	probably_damaging(0.972)	tolerated(0.06)	deleterious(0.736)	NULL
SPEG	10290	genome.wustl.edu	37	2	220348792	220348792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005876.4	+1	validated	p.P2203S	0.001	75	0%	25	28%	-	-	benign(0.025)	tolerated(0.09)	neutral(0.297)	NULL
DNER	92737	genome.wustl.edu	37	2	230377604	230377604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_139072.3	-1	validated	p.E348K	1.000	122	0%	189	40.2%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_EGF,superfamily_SSF57196
HDLBP	3069	genome.wustl.edu	37	2	242170281	242170281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005336.3	-1	validated	p.E1123K	0.917	197	0%	144	31.9%	-	-	benign(0.006)	deleterious(0.01)	neutral(0.406)	superfamily_SSF54791
ATG7	10533	genome.wustl.edu	37	3	11340199	11340199	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006395.2	+1	validated	p.L10	0.991	243	0%	295	27.8%	-	-	-	-	-	NULL
ZFYVE20	64145	genome.wustl.edu	37	3	15116191	15116191	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022340.2	-1	validated	p.L485V	0.994	72	0%	51	52.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NEK10	152110	genome.wustl.edu	37	3	27215931	27215931	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000396636	-1	known	p.F925	1.000	140	0%	308	54.2%	-	-	-	-	-	NULL
ITGA9	3680	genome.wustl.edu	37	3	37774208	37774208	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002207.2	+1	reviewed	p.E691D	1.000	203	0%	222	55%	-	-	probably_damaging(0.997)	tolerated(0.46)	deleterious(0.478)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ZNF35	7584	genome.wustl.edu	37	3	44700846	44700846	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003420.3	+1	validated	p.E331Q	0.997	120	0%	250	27.6%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_C2H2 and C2HC zinc fingers
LIMD1	8994	genome.wustl.edu	37	3	45714232	45714232	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014240.2	+1	validated	p.V564	1.000	155	0%	188	28.7%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
CSPG5	10675	genome.wustl.edu	37	3	47619102	47619102	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006574.3	-1	validated	p.I138M	0.000	21	0.000	9	0.667	-	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMPfam_Chon_Sulph_att
SLC25A20	788	genome.wustl.edu	37	3	48921465	48921465	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000387.4	-1	reviewed	p.K97N	1.000	149	0%	167	58.1%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
AMIGO3	386724	genome.wustl.edu	37	3	49756607	49756607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198722.2	-1	validated	p.D98H	0.001	26	0%	12	75%	-	-	benign(0.023)	tolerated(0.1)	neutral(0.287)	superfamily_SSF52058
CACNA2D2	9254	genome.wustl.edu	37	3	50405253	50405253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005505.1	-1	reviewed	p.D742N	1.000	93	0%	71	31%	-	-	possibly_damaging(0.894)	tolerated(0.49)	neutral(0.362)	NULL
ACY1	95	genome.wustl.edu	37	3	52020284	52020284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000666.1	+1	reviewed	p.V125M	0.950	52	0%	44	43.2%	-	-	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_Peptidase_M20,superfamily_SSF53187
NT5DC2	64943	genome.wustl.edu	37	3	52559279	52559279	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001134231.1	-1	validated	p.E384	0.554	42	0%	33	54.5%	-	-	-	-	-	HMMPfam_5_nucleotid
FAM208A	23272	genome.wustl.edu	37	3	56675775	56675775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001112736.1	-1	validated	p.P741A	0.458	108	0%	161	54.7%	-	-	possibly_damaging(0.477)	tolerated(0.6)	neutral(0.162)	NULL
C3orf67	200844	genome.wustl.edu	37	3	58852332	58852332	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198463.2	-1	validated	p.L281	0.000	398	0%	499	56.7%	-	-	-	-	-	NULL
FHIT	2272	genome.wustl.edu	37	3	60522690	60522690	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002012.2	-1	reviewed	p.S2	0.000	185	0%	268	31.3%	-	-	-	-	-	superfamily_HIT-like
EPHA3	2042	genome.wustl.edu	37	3	89448533	89448533	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005233.5	+1	reviewed	p.L499	1.000	117	0%	185	23.8%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NSUN3	63899	genome.wustl.edu	37	3	93845075	93845075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022072.3	+1	provisional	p.R255L	1.000	81	0%	156	26.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335
HHLA2	11148	genome.wustl.edu	37	3	108072423	108072423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007072.2	+1	provisional	p.H72N	0.175	77	0%	315	28.9%	-	-	possibly_damaging(0.642)	deleterious(0.01)	deleterious(0.631)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
TIMMDC1	51300	genome.wustl.edu	37	3	119219642	119219642	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016589.3	+1	validated	p.H99D	0.902	313	0%	338	26.9%	-	-	benign(0.15)	tolerated(0.2)	neutral(0.062)	NULL
ADPRH	141	genome.wustl.edu	37	3	119306535	119306535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001125.2	+1	reviewed	p.R295Q	1.000	146	0.7%	166	32.5%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_ADP_ribosyl_GH,superfamily_ADP-ribosylglycohydrolase
POLQ	10721	genome.wustl.edu	37	3	121206992	121206992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_199420.3	-1	validated	p.P1596A	0.000	262	0%	479	28%	-	-	benign(0.026)	tolerated(1)	neutral(0.001)	NULL
POLQ	10721	genome.wustl.edu	37	3	121207343	121207343	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_199420.3	-1	validated	p.P1479A	0.001	151	0%	349	28.7%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
CCDC58	131076	genome.wustl.edu	37	3	122102041	122102041	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001017928.2	-1	validated	p.E11Q	1.000	54	0%	30	16.7%	-	-	possibly_damaging(0.926)	tolerated(0.32)	neutral(0.399)	HMMPfam_Cid2
HSPBAP1	79663	genome.wustl.edu	37	3	122471443	122471443	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024610.4	-1	provisional	p.E274Q	1.000	150	0%	212	47.2%	-	-	possibly_damaging(0.756)	tolerated(0.15)	deleterious(0.520)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
MYLK	4638	genome.wustl.edu	37	3	123411669	123411669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_053025.3	-1	reviewed	p.A1160T	1.000	44	0%	41	63.4%	-	-	probably_damaging(0.963)	tolerated(0.13)	deleterious(0.658)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PIK3CB	5291	genome.wustl.edu	37	3	138426123	138426123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006219.1	-1	provisional	p.E470K	1.000	249	0%	603	27.7%	-	-	possibly_damaging(0.641)	tolerated(0.13)	deleterious(0.477)	superfamily_C2_CaLB
ATR	545	genome.wustl.edu	37	3	142268344	142268344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001184.3	-1	reviewed	p.E1050Q	1.000	45	0%	114	53.5%	-	-	probably_damaging(0.985)	tolerated(0.36)	neutral(0.452)	superfamily_ARM repeat
HPS3	84343	genome.wustl.edu	37	3	148858141	148858141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032383.3	+1	reviewed	p.E190K	0.842	362	0%	540	28.9%	-	-	possibly_damaging(0.585)	tolerated(0.07)	deleterious(0.520)	NULL
SMC4	10051	genome.wustl.edu	37	3	160142760	160142760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001002800.1	+1	validated	p.E811K	0.013	164	0%	235	26.8%	-	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPATA16	83893	genome.wustl.edu	37	3	172674605	172674605	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_031955.5	-1	reviewed	p.E315Q	1.000	224	0%	576	29.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_TPR-like
TBL1XR1	79718	genome.wustl.edu	37	3	176744217	176744217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024665.4	-1	reviewed	p.E488K	1.000	335	0%	629	56.8%	-	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMSmart_WD40,superfamily_WD40_like
PIK3CA	5290	genome.wustl.edu	37	3	178916728	178916728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006218.2	+1	reviewed	p.E39K	1.000	134	0%	217	56.2%	-	-	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178921520	178921520	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006218.2	+1	reviewed	p.L334	1.000	182	0%	260	55.8%	-	-	-	-	-	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
RFC4	5984	genome.wustl.edu	37	3	186510335	186510335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002916.3	-1	reviewed	p.Q207E	1.000	345	0%	435	56.1%	-	-	benign(0.121)	tolerated(0.19)	neutral(0.059)	HMMPfam_AAA,superfamily_SSF52540
LSG1	55341	genome.wustl.edu	37	3	194392810	194392810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018385.2	-1	reviewed	p.R28C	0.932	30	0%	31	64.5%	-	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
MUC4	4585	genome.wustl.edu	37	3	195509980	195509980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018406.5	-1	reviewed	p.S2696L	0.998	456	0%	386	37.8%	-	-	benign(0.204)	-	-	NULL
SH3BP2	6452	genome.wustl.edu	37	4	2831587	2831587	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000513069	+1	known	p.Q22E	0.000	38	0%	18	27.8%	-	-	-	-	-	NULL
PSAPL1	768239	genome.wustl.edu	37	4	7435724	7435724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001085382.1	-1	validated	p.E295K	0.768	43	0%	37	43.2%	-	-	benign(0.106)	tolerated(0.08)	neutral(0.308)	HMMPfam_SapB_1,HMMSmart_SapB,superfamily_Saposin_like
CC2D2A	57545	genome.wustl.edu	37	4	15529121	15529121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001080522.2	+1	reviewed	p.P401T	0.574	312	0%	301	34.2%	-	-	benign(0.003)	tolerated(0.88)	-	NULL
PROM1	8842	genome.wustl.edu	37	4	16077474	16077474	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006017.2	-1	reviewed	p.S19*	0.004	150	0%	122	43.4%	-	-	-	-	-	HMMPfam_Prominin
DHX15	1665	genome.wustl.edu	37	4	24577892	24577892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001358.2	-1	reviewed	p.E161K	1.000	257	0%	274	42.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_AAA,HMMSmart_DEXDc,superfamily_SSF52540
PDS5A	23244	genome.wustl.edu	37	4	39846302	39846302	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001100399.1	-1	reviewed	p.L1174	1.000	294	0%	339	42.8%	-	-	-	-	-	NULL
LRRC66	339977	genome.wustl.edu	37	4	52883432	52883432	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001024611.1	-1	provisional	p.L116	0.924	355	0.3%	358	44.1%	-	-	-	-	-	superfamily_SSF52058
POLR2B	5431	genome.wustl.edu	37	4	57860877	57860877	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000938.1	+1	reviewed	p.Q141E	1.000	226	0%	227	39.2%	-	-	benign(0)	tolerated(1)	-	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
UBA6	55236	genome.wustl.edu	37	4	68530962	68530962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018227.5	-1	validated	p.P281Q	1.000	136	0%	204	44.1%	-	-	probably_damaging(0.991)	tolerated(0.57)	neutral(0.450)	superfamily_Activating enzymes of the ubiquitin-like proteins
SLC4A4	8671	genome.wustl.edu	37	4	72222736	72222736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001134742.1	+1	reviewed	p.D188N	1.000	136	0%	193	44.6%	-	-	benign(0.008)	tolerated(0.12)	neutral(0.261)	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
PTPN13	5783	genome.wustl.edu	37	4	87728966	87728966	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_080685.2	+1	reviewed	p.V2338	0.990	132	0%	139	45.3%	-	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
SLC10A6	345274	genome.wustl.edu	37	4	87746662	87746662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_197965.2	-1	validated	p.S277C	0.997	123	0%	120	43.3%	-	-	benign(0.418)	-	-	NULL
GRID2	2895	genome.wustl.edu	37	4	94690541	94690541	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001510.2	+1	validated	p.F847	1.000	178	0%	242	38.8%	-	-	-	-	-	HMMPfam_Lig_chan
ADH1C	126	genome.wustl.edu	37	4	100260743	100260743	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000669.3	-1	reviewed	p.S365C	0.006	182	0%	274	37.2%	-	-	possibly_damaging(0.87)	deleterious(0.01)	deleterious(0.744)	superfamily_GroES-like
TACR3	6870	genome.wustl.edu	37	4	104640578	104640578	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001059.1	-1	reviewed	p.I85	1.000	106	0%	52	28.8%	-	-	-	-	-	superfamily_SSF81321
TET2	54790	genome.wustl.edu	37	4	106190770	106190770	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001127208.1	+1	validated	p.E1350Q	1.000	90	0%	138	32.6%	-	-	possibly_damaging(0.933)	tolerated(0.07)	deleterious(0.698)	NULL
PAPSS1	9061	genome.wustl.edu	37	4	108575878	108575878	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005443.4	-1	validated	p.T358	0.036	158	0%	256	40.6%	-	-	-	-	-	HMMPfam_ATP-sulfurylase,superfamily_PUA domain-like
LEF1	51176	genome.wustl.edu	37	4	109088742	109088742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016269.4	-1	reviewed	p.S61C	1.000	156	0%	72	36.1%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_CTNNB1_binding
SEC24D	9871	genome.wustl.edu	37	4	119754806	119754806	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014822.2	-1	reviewed	p.Q16*	1.000	201	0.5%	169	36.1%	-	-	-	-	-	NULL
TTC29	83894	genome.wustl.edu	37	4	147830187	147830187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_031956.2	-1	validated	p.E131K	0.907	79	0%	148	35.8%	-	-	benign(0.28)	tolerated(0.22)	neutral(0.128)	superfamily_TPR-like
NR3C2	4306	genome.wustl.edu	37	4	149356787	149356787	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000901.4	-1	reviewed	p.S409*	0.997	110	0%	123	39%	-	-	-	-	-	NULL
FAM160A1	729830	genome.wustl.edu	37	4	152498674	152498674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001109977.1	+1	predicted	p.E60K	1.000	73	0%	162	42.6%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
FAM160A1	729830	genome.wustl.edu	37	4	152507892	152507892	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001109977.1	+1	predicted	p.L278V	0.464	91	0%	146	32.2%	-	-	probably_damaging(0.955)	tolerated(0.28)	neutral(0.430)	HMMPfam_RAI16-like
RXFP1	59350	genome.wustl.edu	37	4	159573171	159573171	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_021634.2	+1	provisional	p.L746	0.050	171	0%	170	38.8%	-	-	-	-	-	NULL
DDX60L	91351	genome.wustl.edu	37	4	169374340	169374340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001012967.1	-1	validated	p.Q311E	0.385	114	0%	134	35.1%	-	-	probably_damaging(0.994)	tolerated(0.19)	deleterious(0.502)	NULL
FAT1	2195	genome.wustl.edu	37	4	187521515	187521515	+	Splice_Site	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005245.3	-1	reviewed	e21-1	1.000	97	0%	74	45.9%	-	-	-	-	-	-
FAT1	2195	genome.wustl.edu	37	4	187629880	187629880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005245.3	-1	reviewed	p.E368K	1.000	353	0%	260	42.3%	-	-	probably_damaging(0.992)	tolerated(0.09)	deleterious(0.744)	NULL
ZFP42	132625	genome.wustl.edu	37	4	188924718	188924718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_174900.3	+1	validated	p.G253R	1.000	163	0%	110	42.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
PLEKHG4B	153478	genome.wustl.edu	37	5	144989	144989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_052909.3	+1	validated	p.R264K	0.003	46	0%	17	35.3%	-	-	benign(0.005)	tolerated(1)	-	NULL
AHRR	57491	genome.wustl.edu	37	5	428029	428029	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020731.3	+1	reviewed	p.P294	0.002	52	0%	21	42.9%	-	-	-	-	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5462278	5462278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015325.1	+1	validated	p.S944L	0.000	84	0%	89	39.3%	-	-	benign(0)	tolerated(1)	-	NULL
MARCH11	441061	genome.wustl.edu	37	5	16091163	16091163	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001102562.1	-1	provisional	p.E241Q	1.000	92	0%	127	40.2%	-	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
ZFR	51663	genome.wustl.edu	37	5	32420193	32420193	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016107.3	-1	validated	p.S51	1.000	63	0%	60	36.7%	-	-	-	-	-	NULL
UGT3A2	167127	genome.wustl.edu	37	5	36049090	36049090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_174914.3	-1	validated	p.F248L	0.839	203	0%	303	34%	-	-	benign(0.006)	tolerated(1)	-	HMMPfam_UDPGT,superfamily_SSF53756
SLC1A3	6507	genome.wustl.edu	37	5	36677229	36677229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004172.4	+1	reviewed	p.R268K	0.562	255	0%	288	41.7%	-	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_SDF
NIPBL	25836	genome.wustl.edu	37	5	36985857	36985857	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_133433.3	+1	reviewed	p.D859H	1.000	62	0%	89	43.8%	-	-	benign(0.351)	deleterious(0.03)	deleterious(0.475)	superfamily_ARM repeat
EGFLAM	133584	genome.wustl.edu	37	5	38427212	38427212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152403.2	+1	validated	p.E638K	1.000	138	0%	199	38.2%	-	-	probably_damaging(0.992)	tolerated(0.39)	neutral(0.464)	HMMSmart_LamG,superfamily_ConA_like_lec_gl
HEATR7B2	133558	genome.wustl.edu	37	5	40998731	40998731	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_173489.4	-1	validated	p.R1545T	0.201	133	0%	279	38%	-	-	benign(0.079)	tolerated(0.26)	neutral(0.040)	superfamily_ARM repeat
GAPT	202309	genome.wustl.edu	37	5	57790577	57790577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152687.2	+1	provisional	p.E72K	0.005	62	0%	156	45.5%	-	-	benign(0)	tolerated(1)	-	NULL
CENPK	64105	genome.wustl.edu	37	5	64824778	64824778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022145.3	-1	validated	p.L146F	0.061	137	0%	155	40.6%	-	-	possibly_damaging(0.81)	deleterious(0.04)	deleterious(0.654)	NULL
PPWD1	23398	genome.wustl.edu	37	5	64863428	64863428	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015342.2	+1	validated	p.H95	1.000	341	0%	246	41.5%	-	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PIK3R1	5295	genome.wustl.edu	37	5	67591128	67591128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_181523.1	+1	reviewed	p.R574T	1.000	374	0%	441	36.3%	-	-	probably_damaging(0.997)	tolerated(0.26)	deleterious(0.500)	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74442997	74442997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000274361	-1	known	p.P747S	0.076	474	0%	720	36.4%	-	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	superfamily_ANK
COL4A3BP	10087	genome.wustl.edu	37	5	74698866	74698866	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001130105.1	-1	reviewed	p.L444	1.000	274	0%	385	38.4%	-	-	-	-	-	NULL
AGGF1	55109	genome.wustl.edu	37	5	76326661	76326661	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018046.3	+1	validated	p.Q24*	1.000	29	0%	14	42.9%	-	-	-	-	-	NULL
AP3B1	8546	genome.wustl.edu	37	5	77590340	77590340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003664.3	-1	reviewed	p.Q22E	0.989	154	0%	75	48%	-	-	benign(0.015)	tolerated(1)	neutral(0.001)	NULL
TTC37	9652	genome.wustl.edu	37	5	94800318	94800318	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014639.2	-1	provisional	p.S1563*	0.739	357	0%	382	32.7%	-	-	-	-	-	NULL
PPIP5K2	23262	genome.wustl.edu	37	5	102509582	102509582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015216.2	+1	provisional	p.S812F	1.000	201	0%	490	40%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acid_phosphat_A,superfamily_SSF53254
APC	324	genome.wustl.edu	37	5	112176929	112176929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000038.4	+1	reviewed	p.E1880K	1.000	316	0%	368	39.7%	-	-	possibly_damaging(0.692)	tolerated(0.22)	neutral(0.289)	NULL
ADAMTS19	171019	genome.wustl.edu	37	5	129072812	129072812	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_133638.3	+1	reviewed	p.V1175	1.000	57	0%	94	35.1%	-	-	-	-	-	HMMPfam_PLAC
AFF4	27125	genome.wustl.edu	37	5	132232207	132232207	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014423.3	-1	validated	p.L705	0.996	363	0%	390	39.5%	-	-	-	-	-	HMMPfam_AF-4
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139820719	139820719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020690.4	+1	reviewed	p.S302F	1.000	195	0%	237	36.7%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Ank,superfamily_ANK
PCDHA11	56138	genome.wustl.edu	37	5	140249384	140249384	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018902.3	+1	reviewed	p.V232	0.752	76	0%	58	44.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB12	56124	genome.wustl.edu	37	5	140589089	140589089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018932.3	+1	reviewed	p.E204Q	0.006	322	0%	199	39.7%	-	-	benign(0.155)	tolerated(0.38)	neutral(0.031)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA8	9708	genome.wustl.edu	37	5	140773889	140773889	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032088.1	+1	reviewed	p.S503	0.001	113	0%	58	31%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
RNF14	9604	genome.wustl.edu	37	5	141353262	141353262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004290.3	+1	reviewed	p.R37G	1.000	381	0%	278	40.6%	-	-	possibly_damaging(0.772)	tolerated(0.14)	deleterious(0.536)	HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like
RBM27	54439	genome.wustl.edu	37	5	145610219	145610219	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018989.1	+1	validated	e6-1	1.000	108	0%	129	43.4%	-	-	-	-	-	-
ADRB2	154	genome.wustl.edu	37	5	148207507	148207507	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000024.5	+1	reviewed	p.E371	1.000	135	0%	114	45.6%	-	-	-	-	-	NULL
PDGFRB	5159	genome.wustl.edu	37	5	149513198	149513198	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002609.3	-1	reviewed	p.E295	0.060	163	0%	94	43.6%	-	-	-	-	-	HMMSmart_IGc2,superfamily_SSF48726
ANXA6	309	genome.wustl.edu	37	5	150512098	150512098	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001155.3	-1	reviewed	p.P225	0.231	102	0%	75	45.3%	-	-	-	-	-	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
GABRA1	2554	genome.wustl.edu	37	5	161317966	161317966	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000806.5	+1	reviewed	p.Q256*	1.000	205	0%	228	41.7%	-	-	-	-	-	superfamily_Neu_channel_TM
FAF2	23197	genome.wustl.edu	37	5	175926018	175926018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014613.2	+1	reviewed	p.R315W	0.995	240	0%	297	10.8%	-	-	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
NSD1	64324	genome.wustl.edu	37	5	176562745	176562745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022455.4	+1	reviewed	p.T214I	1.000	184	0%	151	43%	-	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
ZFP2	80108	genome.wustl.edu	37	5	178358735	178358735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_030613.2	+1	provisional	p.E141K	0.001	103	0%	118	46.6%	-	-	possibly_damaging(0.614)	tolerated(0.2)	neutral(0.262)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CANX	821	genome.wustl.edu	37	5	179143237	179143237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001024649.1	+1	reviewed	p.E285K	1.000	187	0%	185	44.9%	-	-	benign(0.285)	tolerated(0.23)	neutral(0.129)	HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_P-domain of calnexin/calreticulin,PatternScan_CALRETICULIN_REPEAT
DSP	1832	genome.wustl.edu	37	6	7582897	7582897	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004415.2	+1	reviewed	p.S1801*	1.000	239	0%	319	59.6%	-	-	-	-	-	superfamily_tRNA-binding arm
MUTED	63915	genome.wustl.edu	37	6	8015974	8015974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_201280.1	-1	reviewed	p.E158K	0.025	483	0%	652	56.7%	-	-	benign(0.273)	tolerated(0.08)	neutral(0.329)	NULL
JARID2	3720	genome.wustl.edu	37	6	15497248	15497248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004973.2	+1	reviewed	p.E598K	1.000	26	0%	28	64.3%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
ATXN1	6310	genome.wustl.edu	37	6	16327437	16327437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000332.3	-1	reviewed	p.D369N	1.000	64	0%	35	60%	-	-	benign(0.4)	deleterious(0)	deleterious(0.573)	NULL
FAM65B	9750	genome.wustl.edu	37	6	24828518	24828518	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014722.2	-1	validated	p.R859*	0.238	43	0%	85	22.4%	-	-	-	-	-	NULL
SLC17A4	10050	genome.wustl.edu	37	6	25773854	25773854	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005495.2	+1	validated	p.A313	0.000	211	0.5%	511	27.2%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZNF322	79692	genome.wustl.edu	37	6	26638661	26638661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024639.3	-1	validated	p.H41Y	1.000	569	0.2%	917	39.9%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_SSF57667
HIST1H2AG	8969	genome.wustl.edu	37	6	27101124	27101124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_021064.4	+1	reviewed	p.E92Q	1.000	205	0%	159	30.8%	-	-	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	HMMSmart_SM00414,superfamily_Histone-fold
HIST1H2BL	8340	genome.wustl.edu	37	6	27775456	27775456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003519.3	-1	reviewed	p.E77K	1.000	309	0.3%	262	35.5%	-	-	benign(0.323)	deleterious(0.04)	neutral(0.450)	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
ZSCAN12	9753	genome.wustl.edu	37	6	28358391	28358391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000361028	-1	known	p.G559V	1.000	413	0%	548	28.3%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF57667
HLA-F	3134	genome.wustl.edu	37	6	29693797	29693797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001098479.1	+1	reviewed	p.R338K	0.001	204	0%	201	58.7%	-	-	possibly_damaging(0.516)	tolerated(0.09)	deleterious(0.470)	NULL
TEAD3	7005	genome.wustl.edu	37	6	35443411	35443411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000402886	-1	known	p.D265N	0.999	146	0%	129	32.6%	-	-	possibly_damaging(0.455)	deleterious(0)	deleterious(0.594)	HMMPfam_TEA
KCTD20	222658	genome.wustl.edu	37	6	36454759	36454759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_173562.3	+1	provisional	p.E356G	1.000	112	0%	158	21.5%	-	-	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	NULL
FGD2	221472	genome.wustl.edu	37	6	36990114	36990114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_173558.3	+1	validated	p.R476C	1.000	20	0%	18	77.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
MDGA1	266727	genome.wustl.edu	37	6	37622284	37622284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_153487.3	-1	validated	p.L250V	0.925	85	0%	65	29.2%	-	-	benign(0.003)	tolerated(0.33)	neutral(0.024)	HMMSmart_SM00409,superfamily_Immunoglobulin
DAAM2	23500	genome.wustl.edu	37	6	39846356	39846356	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015345.2	+1	validated	p.E513Q	1.000	67	0%	57	52.6%	-	-	benign(0.33)	tolerated(0.08)	neutral(0.403)	NULL
ABCC10	89845	genome.wustl.edu	37	6	43400370	43400370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033450.2	+1	reviewed	p.E175K	0.991	17	0%	19	36.8%	-	-	benign(0.361)	tolerated(0.49)	neutral(0.125)	NULL
HSP90AB1	3326	genome.wustl.edu	37	6	44219877	44219877	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007355.2	+1	provisional	p.S535*	1.000	210	0%	206	27.7%	-	-	-	-	-	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90
PTCHD4	442213	genome.wustl.edu	37	6	47846234	47846234	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001013732.3	-1	validated	p.F765	1.000	155	0%	389	26%	-	-	-	-	-	HMMPfam_Patched,superfamily_SSF82866
PKHD1	5314	genome.wustl.edu	37	6	51889575	51889575	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_138694.3	-1	reviewed	p.S1678*	0.872	78	0%	87	71.3%	-	-	-	-	-	superfamily_E set domains
BMP5	653	genome.wustl.edu	37	6	55638997	55638997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_021073.2	-1	reviewed	p.G293R	1.000	290	0%	563	59.1%	-	-	possibly_damaging(0.722)	deleterious(0.04)	deleterious(0.611)	HMMPfam_TGFb_propeptide
EYS	346007	genome.wustl.edu	37	6	64472462	64472462	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001142800.1	-1	reviewed	p.E2655Q	1.000	100	0%	354	26.6%	-	-	probably_damaging(0.98)	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181
KCNQ5	56479	genome.wustl.edu	37	6	73843282	73843282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_019842.3	+1	reviewed	p.Q462H	1.000	92	0%	114	36.8%	-	-	probably_damaging(0.997)	tolerated(0.13)	deleterious(0.719)	HMMPfam_KCNQ_channel
FILIP1	27145	genome.wustl.edu	37	6	76063259	76063259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015687.2	-1	validated	p.E209K	1.000	147	0%	177	54.2%	-	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_CortBP2
MYO6	4646	genome.wustl.edu	37	6	76624709	76624709	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004999.3	+1	reviewed	p.L1280V	1.000	62	0%	87	25.3%	-	-	unknown(0)	deleterious(0.01)	-	NULL
PHIP	55023	genome.wustl.edu	37	6	79675690	79675690	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017934.5	-1	validated	p.D1097H	1.000	153	0%	297	30.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE3D	90025	genome.wustl.edu	37	6	83763937	83763937	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198920.1	-1	provisional	p.Q99*	1.000	294	0%	490	59.4%	-	-	-	-	-	HMMPfam_DUF2351
PGM3	5238	genome.wustl.edu	37	6	83898457	83898457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015599.1	-1	provisional	p.E89K	1.000	239	0%	308	58.8%	-	-	benign(0.001)	tolerated(0.91)	-	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains
RARS2	57038	genome.wustl.edu	37	6	88226570	88226570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020320.3	-1	reviewed	p.Q514E	1.000	214	0%	425	29.2%	-	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
ANKRD6	22881	genome.wustl.edu	37	6	90276796	90276796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014942.3	+1	validated	p.A34V	1.000	64	0%	141	60.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MDN1	23195	genome.wustl.edu	37	6	90353886	90353886	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014611.1	-1	provisional	p.P5543	0.718	261	0%	341	25.2%	-	-	-	-	-	HMMSmart_SM00327,superfamily_vWA-like
SMPDL3A	10924	genome.wustl.edu	37	6	123124825	123124825	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006714.3	+1	validated	p.Q195H	1.000	313	0%	526	67.7%	-	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Metallophos,superfamily_SSF56300
RNF217	154214	genome.wustl.edu	37	6	125366447	125366447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152553.2	+1	provisional	p.E33Q	1.000	80	0%	240	61.3%	-	-	possibly_damaging(0.515)	tolerated(0.23)	neutral(0.215)	NULL
L3MBTL3	84456	genome.wustl.edu	37	6	130454764	130454764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032438.1	+1	validated	p.E712K	1.000	58	0%	150	68.7%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
HBS1L	10767	genome.wustl.edu	37	6	135318578	135318578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006620.3	-1	reviewed	p.E252D	1.000	123	0%	225	64%	-	-	benign(0.194)	tolerated(0.13)	neutral(0.271)	NULL
AHI1	54806	genome.wustl.edu	37	6	135768164	135768164	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001134830.1	-1	reviewed	p.W587*	1.000	227	0%	498	19.7%	-	-	-	-	-	superfamily_WD40 repeat-like
PHACTR2	9749	genome.wustl.edu	37	6	144104370	144104370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001100164.1	+1	validated	p.E554Q	1.000	139	0%	335	20%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
EZR	7430	genome.wustl.edu	37	6	159191897	159191897	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001111077.1	-1	reviewed	p.R330T	0.994	141	0%	155	19.4%	-	-	possibly_damaging(0.702)	deleterious(0)	deleterious(0.697)	superfamily_SSF50729
MLLT4	4301	genome.wustl.edu	37	6	168299118	168299118	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000423229	+1	known	p.D216H	0.868	84	0%	104	19.2%	-	-	-	-	-	NULL
MICALL2	79778	genome.wustl.edu	37	7	1481911	1481911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182924.3	-1	validated	p.S543L	0.000	99	0%	48	41.7%	-	-	possibly_damaging(0.484)	deleterious(0.01)	deleterious(0.566)	NULL
CARD11	84433	genome.wustl.edu	37	7	2977609	2977609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032415.3	-1	validated	p.E359K	1.000	105	0%	64	43.8%	-	-	benign(0.211)	tolerated(0.26)	neutral(0.055)	NULL
SDK1	221935	genome.wustl.edu	37	7	4014013	4014013	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152744.3	+1	validated	p.K610	1.000	138	0%	92	39.1%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NPSR1	387129	genome.wustl.edu	37	7	34889200	34889200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_207172.1	+1	reviewed	p.R350K	0.996	212	0%	187	38%	-	-	benign(0.252)	tolerated(0.38)	neutral(0.043)	superfamily_Family A G protein-coupled receptor-like
ELMO1	9844	genome.wustl.edu	37	7	36901341	36901341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014800.9	-1	reviewed	p.E636K	1.000	123	0%	185	34.6%	-	-	possibly_damaging(0.647)	tolerated(0.48)	neutral(0.238)	superfamily_PH domain-like
YAE1D1	57002	genome.wustl.edu	37	7	39611987	39611987	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020192.3	+1	validated	p.L121	0.373	248	0%	275	36%	-	-	-	-	-	NULL
TNS3	64759	genome.wustl.edu	37	7	47408367	47408367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022748.10	-1	validated	p.Q626E	0.434	34	0%	18	44.4%	-	-	benign(0.014)	tolerated(1)	neutral(0.001)	NULL
DDC	1644	genome.wustl.edu	37	7	50611697	50611697	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000790.3	-1	reviewed	p.V29	0.765	147	0%	109	46.8%	-	-	-	-	-	superfamily_PLP-dependent transferases
POM121L12	285877	genome.wustl.edu	37	7	53104225	53104225	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182595.3	+1	validated	p.V287	0.000	21	0%	13	38.5%	-	-	-	-	-	NULL
ZNF679	168417	genome.wustl.edu	37	7	63726332	63726332	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_153363.2	+1	validated	p.L107	0.138	141	0%	336	36.9%	-	-	-	-	-	NULL
POM121	9883	genome.wustl.edu	37	7	72413744	72413744	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_172020.1	+1	reviewed	p.S806C	0.989	49	0%	23	47.8%	-	-	unknown(0)	deleterious(0.02)	-	NULL
MAGI2	9863	genome.wustl.edu	37	7	77649243	77649243	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012301.3	-1	reviewed	p.E1253Q	1.000	77	0%	47	42.6%	-	-	possibly_damaging(0.482)	deleterious(0.04)	deleterious(0.509)	NULL
STEAP1	26872	genome.wustl.edu	37	7	89793934	89793934	+	Silent	SNP	G	G	C	rs182931664	by1000genomes	TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012449.2	+1	reviewed	p.L302	0.995	176	0%	167	44.3%	-	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91699347	91699347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005751.4	+1	reviewed	p.E2112Q	1.000	98	0%	136	40.4%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98524797	98524797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003496.2	+1	validated	p.E995K	1.000	110	0%	90	42.2%	-	-	benign(0.378)	deleterious(0.05)	neutral(0.466)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98579409	98579409	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000456197	+1	known	p.R2599Q	0.003	39	0%	17	52.9%	-	-	-	-	-	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase
TRRAP	8295	genome.wustl.edu	37	7	98601946	98601946	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000456197	+1	known	p.S3196F	0.998	196	0%	146	38.4%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
C7orf43	55262	genome.wustl.edu	37	7	99753018	99753018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018275.3	-1	predicted	p.E486K	0.995	85	0%	47	42.6%	-	-	benign(0.139)	tolerated(0.12)	neutral(0.273)	NULL
SPDYE3	441272	genome.wustl.edu	37	7	99917323	99917323	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004351.4	+1	validated	p.P117	0.001	256	0.4%	237	37.1%	-	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100681635	100681635	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001040105.1	+1	provisional	p.S2313C	0.148	200	0%	312	33.3%	-	-	unknown(0)	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103163881	103163881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005045.3	-1	reviewed	p.D2483H	1.000	178	0%	155	45.8%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_EGF_2
PIK3CG	5294	genome.wustl.edu	37	7	106545575	106545575	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002649.2	+1	reviewed	p.L1018V	0.920	126	0%	211	44.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
NRCAM	4897	genome.wustl.edu	37	7	107866697	107866697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001037132.1	-1	reviewed	p.Q226E	1.000	156	0%	242	42.6%	-	-	possibly_damaging(0.895)	tolerated(0.06)	deleterious(0.675)	HMMSmart_SM00409,superfamily_Immunoglobulin
MET	4233	genome.wustl.edu	37	7	116339637	116339637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001127500.1	+1	reviewed	p.E167K	0.988	77	0%	105	40%	-	-	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
PAX4	5078	genome.wustl.edu	37	7	127251629	127251629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000338516	-1	known	p.E273K	0.579	87	0%	48	41.7%	-	-	unknown(0)	deleterious(0)	-	NULL
CPA5	93979	genome.wustl.edu	37	7	129999462	129999462	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001127441.1	+1	validated	p.A122	0.000	98	0%	64	34.4%	-	-	-	-	-	superfamily_Protease propeptides/inhibitors
CHRM2	1129	genome.wustl.edu	37	7	136699941	136699941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000739.2	+1	reviewed	p.S110L	1.000	62	0%	177	36.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
TTC26	79989	genome.wustl.edu	37	7	138819475	138819475	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024926.2	+1	validated	p.K26N	1.000	173	0%	132	42.4%	-	-	possibly_damaging(0.687)	tolerated(0.14)	deleterious(0.495)	NULL
KCNH2	3757	genome.wustl.edu	37	7	150654433	150654433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000238.2	-1	reviewed	p.I358M	1.000	238	0%	94	39.4%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
PTPRN2	5799	genome.wustl.edu	37	7	157959893	157959893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002847.3	-1	reviewed	p.E214K	0.003	48	0%	20	35%	-	-	benign(0.31)	deleterious(0.01)	deleterious(0.502)	NULL
CSMD1	64478	genome.wustl.edu	37	8	3432488	3432488	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033225.5	-1	validated	p.I442	1.000	94	0%	123	53.7%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
LPL	4023	genome.wustl.edu	37	8	19813579	19813579	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000311322	+1	known	p.Q335E	0.964	78	0%	130	26.2%	-	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
BMP1	649	genome.wustl.edu	37	8	22052339	22052339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006129.4	+1	reviewed	p.D516N	0.996	61	0%	42	59.5%	-	-	benign(0.028)	tolerated(0.24)	neutral(0.039)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TNFRSF10C	8794	genome.wustl.edu	37	8	22960622	22960622	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000356864	+1	known	p.V36	0.286	60	0%	49	61.2%	-	-	-	-	-	NULL
NEFM	4741	genome.wustl.edu	37	8	24775902	24775902	+	Missense_Mutation	SNP	G	G	A	rs188421098	by1000genomes	TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005382.2	+1	reviewed	p.G845D	0.044	181	0.6%	220	31.8%	-	-	benign(0.169)	tolerated(0.2)	neutral(0.065)	NULL
STMN4	81551	genome.wustl.edu	37	8	27097667	27097667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_030795.2	-1	provisional	p.E138K	0.998	495	0.2%	503	30.2%	-	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Stathmin,superfamily_Stathmin
LOC100287332	100287332	genome.wustl.edu	37	8	27690646	27690646	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002342841.1	+1	model	p.L84	0.010	659	0%	826	57.3%	-	-	-	-	-	NULL
NRG1	3084	genome.wustl.edu	37	8	32614006	32614006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_013956.3	+1	reviewed	p.H302Y	1.000	124	0%	226	60.6%	-	-	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	HMMPfam_Neuregulin
ANK1	286	genome.wustl.edu	37	8	41542069	41542069	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001142446.1	-1	reviewed	p.Q1551	1.000	53	0%	38	26.3%	-	-	-	-	-	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47885285	47885285	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000399732	-1	known	p.E316Q	1.000	249	0%	434	50.9%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
PRKDC	5591	genome.wustl.edu	37	8	48740760	48740760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000314191	-1	known	p.S2848F	0.000	458	0%	601	28.6%	-	-	benign(0.258)	tolerated(0.7)	neutral(0.029)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48855894	48855894	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000314191	-1	known	p.Q281E	1.000	192	0%	270	58.1%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_ARM repeat
ST18	9705	genome.wustl.edu	37	8	53092811	53092811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014682.2	-1	validated	p.P50S	0.999	321	0%	463	57.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RP1	6101	genome.wustl.edu	37	8	55538745	55538745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006269.1	+1	reviewed	p.S768C	0.000	71	0%	79	53.2%	-	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
PDE7A	5150	genome.wustl.edu	37	8	66639126	66639126	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002603.2	-1	validated	p.L276	0.916	105	0%	218	23.4%	-	-	-	-	-	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
ZFHX4	79776	genome.wustl.edu	37	8	77765335	77765335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024721.4	+1	validated	p.P2015S	0.129	24	0%	25	52%	-	-	possibly_damaging(0.49)	-	-	NULL
CNGB3	54714	genome.wustl.edu	37	8	87588110	87588110	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_019098.4	-1	reviewed	p.L784	0.997	400	0%	607	52.9%	-	-	-	-	-	NULL
STK3	6788	genome.wustl.edu	37	8	99560386	99560386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006281.2	-1	validated	p.E318K	1.000	104	0%	294	24.1%	-	-	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100711838	100711838	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017890.3	+1	reviewed	p.K2069N	1.000	175	0%	279	29.4%	-	-	possibly_damaging(0.697)	tolerated(0.07)	deleterious(0.569)	NULL
ZHX2	22882	genome.wustl.edu	37	8	123964207	123964207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014943.3	+1	reviewed	p.E153K	1.000	133	0%	162	30.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RNF139	11236	genome.wustl.edu	37	8	125499283	125499283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007218.3	+1	reviewed	p.R465C	1.000	188	0%	292	51.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133141841	133141841	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004519.2	-1	reviewed	p.Q763*	0.997	53	0%	47	57.4%	-	-	-	-	-	NULL
TRAPPC9	83696	genome.wustl.edu	37	8	141263009	141263009	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_031466.5	-1	reviewed	p.F864L	0.997	70	0%	104	29.8%	-	-	probably_damaging(0.973)	tolerated(0.36)	neutral(0.435)	HMMPfam_Trs120
ZNF16	7564	genome.wustl.edu	37	8	146156997	146156997	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001029976.2	-1	reviewed	p.L392	0.240	142	0%	211	48.8%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DOCK8	81704	genome.wustl.edu	37	9	325675	325675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_203447.3	+1	reviewed	p.E210K	1.000	243	0%	332	43.1%	-	-	probably_damaging(0.987)	tolerated(0.09)	deleterious(0.733)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19336292	19336292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017925.4	+1	provisional	p.S636G	1.000	183	0%	200	45.5%	-	-	possibly_damaging(0.904)	deleterious(0.01)	deleterious(0.764)	NULL
RPS6	6194	genome.wustl.edu	37	9	19376499	19376499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001010.2	-1	reviewed	p.R216K	1.000	259	0%	218	43.6%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
TEK	7010	genome.wustl.edu	37	9	27197390	27197390	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000459.3	+1	reviewed	p.P568A	0.949	77	0%	160	41.2%	-	-	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TAF1L	138474	genome.wustl.edu	37	9	32632026	32632026	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_153809.2	-1	provisional	p.L1184	1.000	301	0.3%	351	42.2%	-	-	-	-	-	NULL
SPAG8	26206	genome.wustl.edu	37	9	35811200	35811200	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000497810	-1	known	p.S279C	1.000	208	0%	131	37.4%	-	-	-	-	-	NULL
GNE	10020	genome.wustl.edu	37	9	36227404	36227404	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001128227.1	-1	reviewed	p.L405	1.000	116	0%	153	38.6%	-	-	-	-	-	HMMPfam_Epimerase_2,superfamily_SSF53756
POLR1E	64425	genome.wustl.edu	37	9	37495267	37495267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022490.1	+1	provisional	p.E217K	1.000	206	0%	193	36.8%	-	-	possibly_damaging(0.822)	tolerated(0.21)	neutral(0.355)	HMMPfam_RNA_pol_I_A49
C9orf85	138241	genome.wustl.edu	37	9	74561940	74561940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182505.3	+1	validated	p.H41Y	1.000	224	0%	294	42.5%	-	-	probably_damaging(0.963)	tolerated(1)	neutral(0.406)	HMMPfam_DUF2039
C9orf85	138241	genome.wustl.edu	37	9	74562019	74562019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182505.3	+1	validated	p.P67R	1.000	228	0%	334	40.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF2039
VPS13A	23230	genome.wustl.edu	37	9	79931247	79931247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033305.2	+1	reviewed	p.M1596I	1.000	84	0%	137	38%	-	-	benign(0.004)	tolerated(0.69)	neutral(0.002)	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88940283	88940283	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024617.3	-1	validated	p.L585	0.841	197	0%	242	41.3%	-	-	-	-	-	HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain
C9orf79	286234	genome.wustl.edu	37	9	90500924	90500924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_178828.4	+1	validated	p.P508T	0.000	52	0%	33	54.5%	-	-	benign(0.405)	tolerated(0.79)	neutral(0.132)	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90537410	90537410	+	Missense_Mutation	SNP	G	G	A	rs139477866	by1000genomes	TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001145124.1	+1	validated	p.S863N	0.002	181	0%	128	39.1%	-	-	-	-	-	NULL
NOL8	55035	genome.wustl.edu	37	9	95086473	95086473	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NR_024020.1	-1	validated	NULL	0.000	278	0%	206	44.2%	-	-	-	-	-	-
C9orf174	100499483	genome.wustl.edu	37	9	100071855	100071855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020893.1	+1	predicted	p.D260N	0.027	38	0%	32	31.2%	-	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
ZNF483	158399	genome.wustl.edu	37	9	114304906	114304906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_133464.2	+1	validated	p.S564L	0.543	74	0%	132	50.8%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR1J1	347168	genome.wustl.edu	37	9	125240074	125240074	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004451.1	-1	provisional	p.L44	1.000	204	0.5%	206	51%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DOLK	22845	genome.wustl.edu	37	9	131708812	131708812	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014908.3	-1	reviewed	p.I257	0.997	88	0%	72	40.3%	-	-	-	-	-	NULL
ENSG00000249728	0	genome.wustl.edu	37	9	133346609	133346609	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000503205	-1	novel	NULL	0.001	9	0.000	10	0.400	-	-	-	-	-	-
COL5A1	1289	genome.wustl.edu	37	9	137582839	137582839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000093.3	+1	reviewed	p.T64M	0.000	82	0%	46	45.7%	-	-	unknown(0)	tolerated(0.17)	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
SDCCAG3	10807	genome.wustl.edu	37	9	139304662	139304662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001039707.1	-1	validated	p.L34V	1.000	50	0%	14	50%	-	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
C9orf139	401563	genome.wustl.edu	37	9	139927565	139927565	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_207511.1	+1	predicted	p.S17*	0.001	122	0%	57	36.8%	-	-	-	-	-	NULL
USP6NL	9712	genome.wustl.edu	37	10	11504940	11504940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001080491.2	-1	validated	p.Q680E	0.024	94	0%	82	58.5%	-	-	benign(0.049)	tolerated(0.21)	neutral(0.047)	NULL
NEBL	10529	genome.wustl.edu	37	10	21098758	21098758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006393.2	-1	reviewed	p.S863C	1.000	147	0%	311	58.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832015	24832015	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_019590.3	+1	validated	p.G1272	0.006	49	0%	93	52.7%	-	-	-	-	-	NULL
MYO3A	53904	genome.wustl.edu	37	10	26463291	26463291	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017433.4	+1	reviewed	p.L1366	0.000	215	0%	326	58.6%	-	-	-	-	-	HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540
ANKRD26	22852	genome.wustl.edu	37	10	27337902	27337902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014915.2	-1	validated	p.E548K	0.509	438	0%	780	51.8%	-	-	unknown(0)	deleterious(0)	-	NULL
TMEM72	643236	genome.wustl.edu	37	10	45430156	45430156	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001123376.1	+1	provisional	p.K134	1.000	48	0%	51	33.3%	-	-	-	-	-	NULL
ALOX5	240	genome.wustl.edu	37	10	45941075	45941075	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000698.2	+1	reviewed	p.K655	0.762	40	0%	45	37.8%	-	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
WDFY4	57705	genome.wustl.edu	37	10	50190623	50190623	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000426033	+1	known	p.K3116T	0.000	78	0%	73	20.5%	-	-	unknown(0)	tolerated(0.18)	-	PatternScan_SUGAR_TRANSPORT_2
C10orf71	118461	genome.wustl.edu	37	10	50531050	50531050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001135196.1	+1	validated	p.E154K	0.347	95	0%	81	22.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANK3	288	genome.wustl.edu	37	10	61973180	61973180	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020987.2	-1	reviewed	p.S329*	1.000	156	0%	312	50.6%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
HKDC1	80201	genome.wustl.edu	37	10	71020981	71020981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_025130.3	+1	validated	p.R768Q	1.000	79	0%	101	60.4%	-	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_Hexokinase_2,superfamily_Actin-like ATPase domain
HK1	3098	genome.wustl.edu	37	10	71119666	71119666	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033497.2	+1	reviewed	p.F84	1.000	176	0%	231	29.4%	-	-	-	-	-	HMMPfam_Hexokinase_1,superfamily_SSF53067
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T	rs121909224	byCluster	TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000371953	+1	known	p.R130*	1.000	253	0%	460	28%	-	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89725043	89725043	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000371953	+1	known	e9-1	1.000	126	0.8%	230	53%	-	-	-	-	-	-
C10orf129	142827	genome.wustl.edu	37	10	96971777	96971777	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_207321.2	+1	validated	p.E300Q	0.929	209	0%	427	28.3%	-	-	benign(0.081)	tolerated(0.52)	neutral(0.015)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ZNF518A	9849	genome.wustl.edu	37	10	97920007	97920007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000371192	+1	known	p.E1310Q	0.066	129	0%	243	25.5%	-	-	-	-	-	NULL
C10orf62	414157	genome.wustl.edu	37	10	99350168	99350168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001009997.2	+1	validated	p.E172K	0.962	42	0%	34	61.8%	-	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	NULL
CRTAC1	55118	genome.wustl.edu	37	10	99656694	99656694	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018058.4	-1	validated	p.D396	0.113	29	0%	21	61.9%	-	-	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105947223	105947223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_025145.5	-1	provisional	p.G572E	1.000	199	0%	291	52.2%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_WD40 repeat-like
PPAPDC1A	196051	genome.wustl.edu	37	10	122334704	122334704	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001030059.1	+1	validated	p.T169	0.001	87	0%	91	61.5%	-	-	-	-	-	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
C10orf120	399814	genome.wustl.edu	37	10	124457516	124457516	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001010912.1	-1	predicted	p.F247L	1.000	380	0%	494	35.4%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
C10orf88	80007	genome.wustl.edu	37	10	124711535	124711535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024942.3	-1	validated	p.E126Q	0.983	322	0%	454	24%	-	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
CTBP2	1488	genome.wustl.edu	37	10	126686669	126686669	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022802.2	-1	reviewed	p.L683	0.997	56	0%	30	66.7%	-	-	-	-	-	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd,superfamily_SSF52283
DOCK1	1793	genome.wustl.edu	37	10	129141972	129141972	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000398025	+1	known	p.E1107	1.000	355	0.3%	384	32.8%	-	-	-	-	-	NULL
PTPRE	5791	genome.wustl.edu	37	10	129859202	129859202	+	Splice_Site	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006504.4	+1	reviewed	e6-1	1.000	619	0%	635	27.1%	-	-	-	-	-	-
LRRC27	80313	genome.wustl.edu	37	10	134151108	134151108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001143757.1	+1	validated	p.Q84E	0.000	255	0%	275	50.5%	-	-	benign(0.005)	tolerated(1)	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
KNDC1	85442	genome.wustl.edu	37	10	135000140	135000140	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152643.6	+1	validated	p.E430Q	0.008	19	0%	19	42.1%	-	-	benign(0.083)	tolerated(0.23)	neutral(0.048)	NULL
CHID1	66005	genome.wustl.edu	37	11	902250	902250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001142676.1	-1	validated	p.K139N	0.998	108	0%	59	42.4%	-	-	probably_damaging(0.957)	tolerated(0.06)	deleterious(0.723)	HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
OR52M1	119772	genome.wustl.edu	37	11	4566757	4566757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004137.1	+1	validated	p.E113K	0.600	145	0%	179	39.7%	-	-	possibly_damaging(0.79)	deleterious(0)	deleterious(0.741)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM34	53840	genome.wustl.edu	37	11	5662457	5662457	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_130390.2	+1	reviewed	p.*271Q	0.001	556	0%	576	27.4%	-	-	-	-	-	NULL
OR56A5	390084	genome.wustl.edu	37	11	5989439	5989439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002343047.1	-1	model	p.S96R	0.476	195	0%	190	32.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52L1	338751	genome.wustl.edu	37	11	6007406	6007406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005173.2	-1	validated	p.R252Q	0.612	215	0%	246	41.9%	-	-	benign(0.067)	tolerated(0.11)	neutral(0.276)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CNGA4	1262	genome.wustl.edu	37	11	6262793	6262793	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001037329.2	+1	validated	p.Q350	1.000	71	0%	44	43.2%	-	-	-	-	-	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
DNHD1	144132	genome.wustl.edu	37	11	6567090	6567090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144666.2	+1	provisional	p.D1641N	1.000	146	0%	113	44.2%	-	-	possibly_damaging(0.616)	tolerated(1)	neutral(0.214)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNHD1	144132	genome.wustl.edu	37	11	6568382	6568382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144666.2	+1	provisional	p.K2071N	0.000	140	0%	79	32.9%	-	-	possibly_damaging(0.482)	tolerated(0.13)	neutral(0.412)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ILK	3611	genome.wustl.edu	37	11	6631058	6631058	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001014794.1	+1	reviewed	p.L320	1.000	118	0%	72	43.1%	-	-	-	-	-	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
TPP1	1200	genome.wustl.edu	37	11	6637639	6637639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000391.3	-1	reviewed	p.D328Y	1.000	102	0%	55	36.4%	-	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	superfamily_Subtilisin-like
OR10A3	26496	genome.wustl.edu	37	11	7960542	7960542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001003745.1	-1	provisional	p.H176Y	0.215	85	0%	129	51.9%	-	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
STK33	65975	genome.wustl.edu	37	11	8494810	8494810	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_030906.2	-1	validated	p.S80*	0.003	212	0%	259	41.3%	-	-	-	-	-	NULL
ST5	6764	genome.wustl.edu	37	11	8729400	8729400	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005418.3	-1	reviewed	p.P785R	1.000	69	0%	40	32.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBED5	58486	genome.wustl.edu	37	11	10875172	10875172	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001143667.1	-1	reviewed	p.L441V	1.000	143	0%	140	41.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TPH1	7166	genome.wustl.edu	37	11	18054861	18054861	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004179.2	-1	reviewed	p.R121T	1.000	169	0%	181	40.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
PTPN5	84867	genome.wustl.edu	37	11	18751411	18751411	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000396166	-1	known	p.L34	0.000	63	0%	19	42.1%	-	-	-	-	-	HMMSmart_PTPc
LGR4	55366	genome.wustl.edu	37	11	27389593	27389593	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018490.2	-1	validated	p.E893Q	1.000	42	0%	38	50%	-	-	benign(0.095)	tolerated(0.07)	neutral(0.326)	NULL
QSER1	79832	genome.wustl.edu	37	11	32975573	32975573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001076786.1	+1	provisional	p.D1321H	1.000	274	0%	340	41.2%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ZNF408	79797	genome.wustl.edu	37	11	46725912	46725912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024741.2	+1	validated	p.S221F	0.000	53	0%	54	44.4%	-	-	benign(0.031)	deleterious(0)	neutral(0.446)	NULL
OR4C45	403257	genome.wustl.edu	37	11	48373753	48373753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000415304	-1	known	p.E83K	0.074	217	0%	311	24.1%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000166007	0	genome.wustl.edu	37	11	55062037	55062038	+	In_Frame_Ins	INS	-	-	TGAGTA	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000309470	-1	known	p.229in_frame_insIL	0.033:0.033	-	-	-	-	-	-	-	-	-	NULL
OR8H2	390151	genome.wustl.edu	37	11	55873223	55873223	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005200.1	+1	provisional	p.Q235	0.000	337	0%	432	43.3%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
APLNR	187	genome.wustl.edu	37	11	57004288	57004288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005161.4	-1	reviewed	p.A64D	0.979	66	0%	31	29%	-	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_7tm_1,superfamily_SSF81321
SSRP1	6749	genome.wustl.edu	37	11	57100998	57100998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003146.2	-1	reviewed	p.S86C	1.000	401	0%	294	41.8%	-	-	possibly_damaging(0.705)	tolerated(0.07)	deleterious(0.573)	NULL
OR5B21	219968	genome.wustl.edu	37	11	58275118	58275118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005218.1	-1	provisional	p.A154V	0.993	65	0%	122	41.8%	-	-	benign(0.044)	deleterious(0.02)	neutral(0.386)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D6	219983	genome.wustl.edu	37	11	59225222	59225222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004708.1	+1	provisional	p.M263I	0.000	86	0%	94	36.2%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_7tm_1,superfamily_SSF81321
MS4A2	2206	genome.wustl.edu	37	11	59856248	59856248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000139.3	+1	reviewed	p.E4K	0.000	188	0%	196	39.3%	-	-	benign(0.224)	-	-	NULL
ENSG00000251217	0	genome.wustl.edu	37	11	60784854	60784854	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000505761	-1	known	NULL	0.000	46	0%	24	54.2%	-	-	-	-	-	-
INCENP	3619	genome.wustl.edu	37	11	61906460	61906460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001040694.1	+1	validated	p.P425L	0.084	100	0%	45	37.8%	-	-	benign(0.104)	tolerated(0.3)	neutral(0.037)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62287041	62287041	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001620.1	-1	validated	p.E4950Q	0.998	114	0%	95	33.7%	-	-	probably_damaging(0.994)	tolerated(0.26)	deleterious(0.486)	NULL
MTA2	9219	genome.wustl.edu	37	11	62361790	62361790	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004739.2	-1	reviewed	p.Q594	1.000	137	0%	76	44.7%	-	-	-	-	-	NULL
KAT5	10524	genome.wustl.edu	37	11	65486375	65486375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182710.1	+1	reviewed	p.E486K	1.000	171	0%	102	38.2%	-	-	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
FIBP	9158	genome.wustl.edu	37	11	65655341	65655341	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000442885	-1	known	p.L116	0.001	65	0%	34	32.4%	-	-	-	-	-	NULL
DPP3	10072	genome.wustl.edu	37	11	66263191	66263191	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005700.3	+1	reviewed	p.F556L	1.000	147	0%	84	34.5%	-	-	probably_damaging(0.989)	tolerated(0.23)	deleterious(0.481)	HMMPfam_Peptidase_M49
IGHMBP2	3508	genome.wustl.edu	37	11	68704361	68704361	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002180.2	+1	reviewed	p.L805V	0.001	21	0.000	5	0.800	-	-	benign(0)	tolerated(1)	-	NULL
ODZ4	26011	genome.wustl.edu	37	11	78600882	78600882	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001098816.2	-1	validated	p.L344	1.000	170	0%	83	47%	-	-	-	-	-	NULL
EED	8726	genome.wustl.edu	37	11	85975252	85975252	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003797.2	+1	reviewed	p.L225V	0.795	275	0%	378	43.1%	-	-	benign(0.253)	deleterious(0.01)	neutral(0.432)	HMMSmart_SM00320,superfamily_WD40 repeat-like
FZD4	8322	genome.wustl.edu	37	11	86662198	86662198	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_012193.2	-1	reviewed	p.E534Q	1.000	287	0%	259	41.3%	-	-	probably_damaging(0.98)	tolerated(0.13)	deleterious(0.676)	NULL
TRIM77P	390231	genome.wustl.edu	37	11	89447551	89447551	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002343107.1	+1	model	p.L233	0.002	174	0%	204	39.7%	-	-	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93431810	93431810	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033395.1	+1	validated	p.L1244	0.000	92	0%	111	44.1%	-	-	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93432177	93432177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033395.1	+1	validated	p.L1367V	0.007	67	0%	81	50.6%	-	-	possibly_damaging(0.936)	tolerated(0.24)	neutral(0.419)	NULL
AMOTL1	154810	genome.wustl.edu	37	11	94597979	94597979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_130847.2	+1	reviewed	p.E739K	1.000	140	0%	140	42.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TRPC6	7225	genome.wustl.edu	37	11	101347129	101347129	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004621.5	-1	reviewed	p.W549*	1.000	130	0%	209	41.1%	-	-	-	-	-	HMMPfam_Ion_trans
ZC3H12C	85463	genome.wustl.edu	37	11	110030004	110030004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033390.1	+1	validated	p.E313Q	1.000	90	0%	107	39.3%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ZC3H12C	85463	genome.wustl.edu	37	11	110030100	110030100	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033390.1	+1	validated	p.E345Q	1.000	136	0%	137	38%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SORL1	6653	genome.wustl.edu	37	11	121500267	121500267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003105.4	+1	reviewed	p.A2214T	1.000	315	0%	318	40.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR6M1	390261	genome.wustl.edu	37	11	123676152	123676152	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005325.1	-1	provisional	p.V302	0.000	56	0%	110	40%	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR10G9	219870	genome.wustl.edu	37	11	123894183	123894183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001001953.1	+1	provisional	p.S155F	0.856	224	0%	232	37.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
IGSF9B	22997	genome.wustl.edu	37	11	133805615	133805615	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014987.1	-1	validated	p.L288	0.999	27	0%	18	44.4%	-	-	-	-	-	HMMSmart_IGc2,HMMSmart_FN3,HMMPfam_I-set,superfamily_SSF48726
CD4	920	genome.wustl.edu	37	12	6926382	6926382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000616.3	+1	validated	p.E348K	0.000	157	0%	140	60.7%	-	-	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_C2-set,superfamily_Immunoglobulin
PHB2	11331	genome.wustl.edu	37	12	7079375	7079375	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001144831.1	-1	validated	p.E66Q	1.000	87	0%	55	30.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Band_7,HMMSmart_SM00244
A2ML1	144568	genome.wustl.edu	37	12	8998740	8998740	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144670.3	+1	validated	p.V535	0.925	444	0%	443	57.1%	-	-	-	-	-	HMMPfam_A2M_N_2
PZP	5858	genome.wustl.edu	37	12	9353925	9353925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002864.2	-1	validated	p.E167Q	0.955	137	0%	232	29.3%	-	-	benign(0.039)	tolerated(1)	neutral(0.002)	HMMPfam_A2M_N
KIAA1467	57613	genome.wustl.edu	37	12	13229056	13229056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020853.1	+1	validated	p.G541S	0.992	159	0%	264	29.5%	-	-	probably_damaging(0.978)	tolerated(0.65)	neutral(0.423)	NULL
EMP1	2012	genome.wustl.edu	37	12	13366730	13366730	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001423.2	+1	validated	p.L97	1.000	174	0%	308	49.4%	-	-	-	-	-	HMMPfam_PMP22_Claudin
LOC728622	728622	genome.wustl.edu	37	12	17142408	17142408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_001130365.3	+1	model	p.D117H	1.000	208	0%	267	59.6%	-	-	-	-	-	HMMPfam_Skp1,superfamily_Skp1 dimerisation domain-like
C12orf39	80763	genome.wustl.edu	37	12	21680708	21680708	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_030572.2	+1	provisional	p.D65H	0.979	64	0%	32	34.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OVCH1	341350	genome.wustl.edu	37	12	29649119	29649119	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_183378.2	-1	validated	p.L92	0.007	167	0%	185	57.8%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
C12orf35	55196	genome.wustl.edu	37	12	32137175	32137175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018169.3	+1	validated	p.D1096N	0.002	153	0%	265	33.2%	-	-	probably_damaging(0.998)	tolerated(0.29)	deleterious(0.503)	NULL
SYT10	341359	genome.wustl.edu	37	12	33535406	33535406	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198992.2	-1	provisional	p.K416N	1.000	381	0%	749	57.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SLC38A4	55089	genome.wustl.edu	37	12	47168957	47168957	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001143824.1	-1	validated	e12-1	1.000	46	0%	212	30.7%	-	-	-	-	-	-
ATF1	466	genome.wustl.edu	37	12	51208198	51208198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005171.3	+1	validated	p.R216T	1.000	114	0%	206	23.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_BRLZ,HMMPfam_bZIP_1
LOC100129509	100129509	genome.wustl.edu	37	12	52771804	52771804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_001718424.1	+1	model	p.L210V	0.001	103	0%	77	23.4%	-	-	-	-	-	NULL
KRT1	3848	genome.wustl.edu	37	12	53072482	53072482	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006121.3	-1	reviewed	p.Q217L	1.000	190	0%	157	24.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
ATP5G2	517	genome.wustl.edu	37	12	54059200	54059200	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005176.5	-1	reviewed	p.L165	1.000	182	0.5%	233	30.9%	-	-	-	-	-	HMMPfam_ATP-synt_C,superfamily_ATPase_F0/V0_c,PatternScan_ATPASE_C
KIAA0748	9840	genome.wustl.edu	37	12	55360991	55360991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001098815.1	-1	validated	p.D96Y	1.000	136	0%	215	31.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ERBB3	2065	genome.wustl.edu	37	12	56482341	56482341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001982.2	+1	reviewed	p.D297N	1.000	234	0%	222	27.5%	-	-	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	HMMPfam_Furin-like,superfamily_Growth factor receptor domain
ERBB3	2065	genome.wustl.edu	37	12	56482342	56482342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001982.2	+1	reviewed	p.D297V	1.000	226	0%	213	28.6%	-	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Furin-like,superfamily_Growth factor receptor domain
RBMS2	5939	genome.wustl.edu	37	12	56981448	56981448	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002898.3	+1	reviewed	p.T354	1.000	129	0%	212	30.2%	-	-	-	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57969053	57969053	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004984.2	+1	reviewed	p.Q635*	1.000	91	0%	75	32%	-	-	-	-	-	NULL
MON2	23041	genome.wustl.edu	37	12	62918888	62918888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015026.2	+1	validated	p.M378I	1.000	358	0.3%	728	26.8%	-	-	possibly_damaging(0.808)	tolerated(0.16)	neutral(0.363)	NULL
MON2	23041	genome.wustl.edu	37	12	62919729	62919729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015026.2	+1	validated	p.G416E	1.000	205	0%	393	29%	-	-	benign(0.033)	tolerated(0.67)	neutral(0.004)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64491088	64491088	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020762.2	+1	validated	p.L582	0.991	118	0%	221	56.6%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SLC35E3	55508	genome.wustl.edu	37	12	69140125	69140125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000319429	+1	known	p.S31F	0.000	21	0%	20	40%	-	-	-	-	-	NULL
PTPRR	5801	genome.wustl.edu	37	12	71286512	71286512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002849.2	-1	reviewed	p.Q102E	1.000	326	0.3%	587	58.8%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72316862	72316862	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022771.4	+1	reviewed	p.P652A	0.000	278	0%	368	26.1%	-	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
USP44	84101	genome.wustl.edu	37	12	95927036	95927036	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001042403.1	-1	validated	p.Q333*	0.638	102	0%	176	50%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
CCDC38	120935	genome.wustl.edu	37	12	96310931	96310931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182496.2	-1	validated	p.A94T	0.004	169	0%	303	31%	-	-	benign(0.355)	tolerated(1)	neutral(0.113)	NULL
C12orf63	374467	genome.wustl.edu	37	12	97073484	97073484	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198520.2	+1	validated	p.I315	0.337	71	0%	183	29.5%	-	-	-	-	-	NULL
SCYL2	55681	genome.wustl.edu	37	12	100707251	100707251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017988.4	+1	provisional	p.E302K	1.000	199	0%	259	55.2%	-	-	benign(0.103)	deleterious(0.04)	neutral(0.357)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,HMMPfam_Pkinase
UTP20	27340	genome.wustl.edu	37	12	101706003	101706003	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014503.2	+1	validated	p.R834T	1.000	176	0%	227	27.3%	-	-	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	superfamily_ARM repeat
MYBPC1	4604	genome.wustl.edu	37	12	102045057	102045057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002465.2	+1	validated	p.L471P	1.000	311	0.3%	431	29%	-	-	possibly_damaging(0.691)	tolerated(0.13)	deleterious(0.500)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
FOXN4	121643	genome.wustl.edu	37	12	109725904	109725904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_213596.2	-1	validated	p.R105Q	0.079	13	0%	10	60%	-	-	benign(0.282)	tolerated(0.36)	neutral(0.106)	NULL
C12orf51	283450	genome.wustl.edu	37	12	112646399	112646399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001109662.2	-1	validated	p.E2213Q	1.000	183	0%	243	31.7%	-	-	benign(0.016)	tolerated(0.5)	neutral(0.011)	NULL
SLC24A6	80024	genome.wustl.edu	37	12	113759022	113759022	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024959.2	-1	validated	p.L96	0.776	157	0%	123	30.9%	-	-	-	-	-	NULL
SRRM4	84530	genome.wustl.edu	37	12	119558070	119558070	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_194286.2	+1	validated	p.K151N	1.000	312	0%	403	25.3%	-	-	unknown(0)	deleterious(0.02)	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123061462	123061462	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014708.4	+1	reviewed	p.L869	0.997	330	0%	421	53.9%	-	-	-	-	-	NULL
HIP1R	9026	genome.wustl.edu	37	12	123335823	123335823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003959.1	+1	validated	p.E186K	1.000	234	0%	207	63.8%	-	-	probably_damaging(0.984)	tolerated(0.24)	neutral(0.468)	HMMPfam_ANTH
AACS	65985	genome.wustl.edu	37	12	125626751	125626751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000261686	+1	known	p.H598Y	1.000	95	0%	86	30.2%	-	-	unknown(0)	deleterious(0)	-	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130898703	130898703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015347.4	-1	validated	p.E873D	1.000	112	0%	94	63.8%	-	-	possibly_damaging(0.934)	tolerated(0.11)	deleterious(0.651)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
NOC4L	79050	genome.wustl.edu	37	12	132632648	132632648	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024078.1	+1	provisional	p.L245	0.997	91	0%	59	16.9%	-	-	-	-	-	NULL
TPTE2	93492	genome.wustl.edu	37	13	20039454	20039454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_199254.2	-1	validated	p.S206L	1.000	357	0%	436	32.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Voltage-gated potassium channels
NUPL1	9818	genome.wustl.edu	37	13	25881962	25881962	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014089.3	+1	reviewed	p.L42	1.000	182	0%	141	40.4%	-	-	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26117487	26117487	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016529.4	+1	validated	p.Q280*	1.000	251	0%	294	32%	-	-	-	-	-	superfamily_Calcium ATPase transduction domain A
POLR1D	51082	genome.wustl.edu	37	13	28222568	28222568	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152705.1	+1	provisional	p.E27Q	1.000	194	0%	319	36.7%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
BRCA2	675	genome.wustl.edu	37	13	32930592	32930592	+	Missense_Mutation	SNP	G	G	C	rs80358968		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000059.3	+1	reviewed	p.R2488T	1.000	136	0%	138	44.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BRCA-2_helical,superfamily_BRCA2_helical
PDS5B	23047	genome.wustl.edu	37	13	33349165	33349165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015032.3	+1	reviewed	p.R1440Q	1.000	148	0%	268	40.3%	-	-	unknown(0)	deleterious(0)	-	NULL
KL	9365	genome.wustl.edu	37	13	33628360	33628360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004795.3	+1	reviewed	p.D426N	1.000	190	0%	177	41.2%	-	-	possibly_damaging(0.527)	tolerated(0.28)	neutral(0.209)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
KBTBD6	89890	genome.wustl.edu	37	13	41704935	41704935	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152903.4	-1	validated	p.I571	1.000	404	0%	402	39.6%	-	-	-	-	-	superfamily_Gal_oxid_central
KIAA0564	23078	genome.wustl.edu	37	13	42303695	42303695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015058.1	-1	validated	p.G874E	1.000	186	0%	418	41.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM13	10206	genome.wustl.edu	37	13	50586697	50586697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001007278.1	+1	reviewed	p.M210I	1.000	94	0%	174	31%	-	-	benign(0.004)	tolerated(0.57)	neutral(0.006)	NULL
TRIM13	10206	genome.wustl.edu	37	13	50587205	50587205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001007278.1	+1	reviewed	p.D380N	0.972	268	0%	304	34.5%	-	-	benign(0.139)	tolerated(0.05)	neutral(0.357)	NULL
VPS36	51028	genome.wustl.edu	37	13	52990009	52990009	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016075.2	-1	validated	p.E373*	1.000	216	0%	234	40.2%	-	-	-	-	-	NULL
HNRNPA1L2	144983	genome.wustl.edu	37	13	53216902	53216902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001011724.1	+1	validated	p.R92K	1.000	15	0%	17	47.1%	-	-	benign(0.072)	tolerated(0.14)	neutral(0.255)	superfamily_SSF54928
PCDH9	5101	genome.wustl.edu	37	13	67205516	67205516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_203487.2	-1	reviewed	p.P1056T	1.000	76	0%	87	40.2%	-	-	benign(0.029)	tolerated(0.4)	neutral(0.018)	NULL
RNF219	79596	genome.wustl.edu	37	13	79190388	79190388	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024546.3	-1	validated	p.S503*	0.936	151	0%	158	33.5%	-	-	-	-	-	NULL
UGGT2	55757	genome.wustl.edu	37	13	96536792	96536792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020121.3	-1	validated	p.E1061K	1.000	162	0%	229	41.5%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_UDP-g_GGTase
METTL21C	196541	genome.wustl.edu	37	13	103343261	103343261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001010977.1	-1	predicted	p.D62N	0.037	384	0.3%	313	12.8%	-	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	superfamily_SSF53335
LOC643677	643677	genome.wustl.edu	37	13	103396408	103396408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002344085.1	-1	model	p.K2142N	0.000	210	0%	516	40.7%	-	-	-	-	-	NULL
TUBGCP3	10426	genome.wustl.edu	37	13	113208490	113208490	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006322.4	-1	provisional	p.L283	0.943	193	0%	137	45.3%	-	-	-	-	-	HMMPfam_Spc97_Spc98
OR11H2	79334	genome.wustl.edu	37	14	20181611	20181611	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000334072	-1	known	p.L155	0.001	465	0%	644	19.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6S1	341799	genome.wustl.edu	37	14	21109418	21109418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001001968.1	-1	provisional	p.R145S	0.000	83	0%	68	48.5%	-	-	benign(0.002)	tolerated(0.43)	neutral(0.013)	HMMPfam_7tm_1,superfamily_SSF81321
SUPT16H	11198	genome.wustl.edu	37	14	21827717	21827717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007192.3	-1	reviewed	p.E743Q	1.000	253	0%	195	39.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SALL2	6297	genome.wustl.edu	37	14	21993136	21993136	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005407.1	-1	validated	p.F242L	1.000	74	0%	47	46.8%	-	-	benign(0.047)	tolerated(0.9)	neutral(0.003)	NULL
ACIN1	22985	genome.wustl.edu	37	14	23549997	23549997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014977.3	-1	validated	p.E241Q	1.000	239	0%	252	36.5%	-	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
JPH4	84502	genome.wustl.edu	37	14	24040169	24040169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032452.2	-1	reviewed	p.E591K	1.000	23	0%	13	46.2%	-	-	possibly_damaging(0.875)	tolerated(0.18)	neutral(0.396)	NULL
IRF9	10379	genome.wustl.edu	37	14	24632289	24632289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006084.4	+1	validated	p.E99K	0.957	199	0%	120	37.5%	-	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	HMMPfam_IRF,HMMSmart_IRF,superfamily_SSF46785
NEDD8	4738	genome.wustl.edu	37	14	24686360	24686360	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006156.2	-1	validated	p.L73	0.999	149	0%	123	39%	-	-	-	-	-	HMMPfam_ubiquitin,superfamily_Ubiquitin-like
C14orf21	161424	genome.wustl.edu	37	14	24770862	24770862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_174913.1	+1	provisional	p.E248K	1.000	215	0%	133	29.3%	-	-	possibly_damaging(0.916)	tolerated(0.05)	deleterious(0.712)	NULL
ADCY4	196883	genome.wustl.edu	37	14	24787658	24787658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_139247.2	-1	reviewed	p.L1066F	1.000	371	0%	241	38.2%	-	-	possibly_damaging(0.671)	tolerated(0.21)	neutral(0.282)	NULL
FAM177A1	283635	genome.wustl.edu	37	14	35550349	35550349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_173607.3	+1	validated	p.S209L	1.000	223	0%	242	33.9%	-	-	possibly_damaging(0.873)	deleterious(0.01)	deleterious(0.745)	NULL
PNN	5411	genome.wustl.edu	37	14	39648531	39648531	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002687.3	+1	validated	p.E220fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Pinin_SDK_memA
PNN	5411	genome.wustl.edu	37	14	39648534	39648534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002687.3	+1	validated	p.E221K	1.000	282	0%	261	37.5%	-	-	probably_damaging(0.992)	tolerated(0.12)	deleterious(0.708)	HMMPfam_Pinin_SDK_memA
PNN	5411	genome.wustl.edu	37	14	39649925	39649925	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002687.3	+1	validated	p.E338Q	1.000	529	0.2%	522	37%	-	-	possibly_damaging(0.67)	tolerated(0.19)	neutral(0.287)	NULL
PNN	5411	genome.wustl.edu	37	14	39650039	39650039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002687.3	+1	validated	p.E376K	1.000	291	0%	326	40.8%	-	-	possibly_damaging(0.915)	tolerated(0.13)	deleterious(0.619)	NULL
PNN	5411	genome.wustl.edu	37	14	39650183	39650183	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002687.3	+1	validated	p.E424Q	1.000	140	0%	147	34%	-	-	probably_damaging(0.959)	tolerated(0.23)	neutral(0.444)	NULL
PNN	5411	genome.wustl.edu	37	14	39650489	39650489	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002687.3	+1	validated	p.E526Q	1.000	244	0%	239	39.3%	-	-	possibly_damaging(0.763)	tolerated(0.29)	neutral(0.312)	NULL
MIA2	117153	genome.wustl.edu	37	14	39716256	39716256	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_054024.3	+1	validated	p.Q160*	0.044	84	0%	164	41.5%	-	-	-	-	-	NULL
FAM179B	23116	genome.wustl.edu	37	14	45523743	45523743	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015091.2	+1	validated	p.S1464*	0.120	139	0%	152	42.1%	-	-	-	-	-	superfamily_ARM repeat
SOS2	6655	genome.wustl.edu	37	14	50612271	50612271	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006939.2	-1	validated	p.E810Q	1.000	351	0%	502	34.5%	-	-	benign(0.039)	tolerated(0.08)	neutral(0.302)	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
SAV1	60485	genome.wustl.edu	37	14	51111570	51111570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_021818.2	-1	reviewed	p.R233Q	1.000	183	0%	182	11%	-	-	possibly_damaging(0.952)	tolerated(0.16)	neutral(0.455)	superfamily_WW domain
NID2	22795	genome.wustl.edu	37	14	52520402	52520402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007361.3	-1	validated	p.E442K	0.046	153	0%	137	47.4%	-	-	benign(0.049)	tolerated(0.39)	neutral(0.019)	NULL
PTGDR	5729	genome.wustl.edu	37	14	52741476	52741476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000953.2	+1	reviewed	p.D292N	0.000	257	0%	264	33%	-	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMPfam_7tm_1,superfamily_SSF81321
OTX2	5015	genome.wustl.edu	37	14	57268999	57268999	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_021728.2	-1	reviewed	p.V116	1.000	222	0%	160	41.9%	-	-	-	-	-	NULL
RTN1	6252	genome.wustl.edu	37	14	60193747	60193747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_021136.2	-1	reviewed	p.R552Q	0.004	50	0%	27	44.4%	-	-	benign(0.001)	tolerated(1)	-	NULL
SLC38A6	145389	genome.wustl.edu	37	14	61451460	61451460	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_153811.2	+1	validated	p.L83	0.995	697	0%	581	38.2%	-	-	-	-	-	HMMPfam_Aa_trans
KCNH5	27133	genome.wustl.edu	37	14	63175005	63175005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_139318.3	-1	reviewed	p.E730Q	0.999	160	0%	121	46.3%	-	-	possibly_damaging(0.872)	tolerated(0.11)	deleterious(0.611)	NULL
SYNE2	23224	genome.wustl.edu	37	14	64469987	64469987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182914.2	+1	reviewed	p.V1446M	0.692	46	0%	64	29.7%	-	-	probably_damaging(0.982)	-	-	HMMSmart_SPEC
SYNE2	23224	genome.wustl.edu	37	14	64593450	64593450	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182914.2	+1	reviewed	p.L4614	0.984	89	0%	107	38.3%	-	-	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64593492	64593492	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_182914.2	+1	reviewed	p.L4628	0.999	80	0%	113	36.3%	-	-	-	-	-	NULL
FNTB	2342	genome.wustl.edu	37	14	65499401	65499401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002028.3	+1	validated	p.E227Q	0.997	67	0%	71	33.8%	-	-	benign(0.178)	deleterious(0.03)	neutral(0.381)	HMMPfam_Prenyltrans,superfamily_Terpenoid cyclases/Protein prenyltransferases
GPHN	10243	genome.wustl.edu	37	14	67382735	67382735	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020806.4	+1	reviewed	p.I135M	1.000	351	0%	643	41.8%	-	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth
FAM71D	161142	genome.wustl.edu	37	14	67671311	67671311	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_173526.2	+1	validated	p.L139	0.975	240	0%	205	34.1%	-	-	-	-	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72152256	72152256	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015556.1	+1	provisional	p.N1094	0.993	78	0%	72	34.7%	-	-	-	-	-	NULL
NUMB	8650	genome.wustl.edu	37	14	73743300	73743300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005743.1	-1	reviewed	p.E648Q	1.000	197	0%	172	40.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C14orf43	91748	genome.wustl.edu	37	14	74186046	74186046	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001043318.1	-1	validated	p.Q1032	0.995	212	0%	127	37%	-	-	-	-	-	NULL
C14orf43	91748	genome.wustl.edu	37	14	74188077	74188077	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001043318.1	-1	validated	p.E954Q	1.000	220	0%	106	34.9%	-	-	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	NULL
C14orf45	80127	genome.wustl.edu	37	14	74514772	74514772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_025057.2	+1	validated	p.Q263E	0.989	300	0%	344	41.9%	-	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
FCF1	51077	genome.wustl.edu	37	14	75181642	75181642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015962.4	+1	validated	p.E47K	1.000	150	0%	151	41.7%	-	-	benign(0.08)	tolerated(0.22)	neutral(0.048)	NULL
MLH3	27030	genome.wustl.edu	37	14	75508377	75508377	+	Nonsense_Mutation	SNP	C	C	A	rs113490514		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001040108.1	-1	reviewed	p.E1136*	0.024	188	0%	166	36.7%	-	-	-	-	-	NULL
SAMD15	161394	genome.wustl.edu	37	14	77844653	77844653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001010860.1	+1	provisional	p.E298K	0.519	91	1.1%	87	40.2%	-	-	benign(0.022)	tolerated(0.2)	neutral(0.050)	NULL
SAMD15	161394	genome.wustl.edu	37	14	77844728	77844728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001010860.1	+1	provisional	p.E323Q	0.002	115	0%	90	35.6%	-	-	possibly_damaging(0.952)	deleterious(0.02)	deleterious(0.778)	NULL
TTC8	123016	genome.wustl.edu	37	14	89336424	89336424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144596.2	+1	reviewed	p.A311T	1.000	100	0%	214	35%	-	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CATSPERB	79820	genome.wustl.edu	37	14	92139258	92139258	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024764.2	-1	validated	p.L361V	1.000	100	0%	124	48.4%	-	-	possibly_damaging(0.653)	tolerated(0.34)	neutral(0.253)	NULL
DDX24	57062	genome.wustl.edu	37	14	94546066	94546066	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020414.3	-1	reviewed	p.S8*	0.014	296	0%	263	38.8%	-	-	-	-	-	NULL
C14orf2	9556	genome.wustl.edu	37	14	104387286	104387286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001127393.1	-1	validated	p.F14L	0.015	445	0%	289	40.5%	-	-	unknown(0)	-	-	NULL
ENSG00000215407	0	genome.wustl.edu	37	15	20457351	20457351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000400226	-1	known	p.H180Y	1.000	228	0%	193	16.1%	-	-	-	-	-	HMMPfam_BRO1
MKRN3	7681	genome.wustl.edu	37	15	23811455	23811455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005664.3	+1	reviewed	p.E176K	0.987	15	0%	20	50%	-	-	probably_damaging(0.995)	tolerated(0.36)	deleterious(0.478)	NULL
LOC283711	283711	genome.wustl.edu	37	15	31712809	31712809	+	RNA	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XR_040656.2	+1	model	NULL	0.999	17	0%	20	40%	-	-	-	-	-	-
ZNF770	54989	genome.wustl.edu	37	15	35273921	35273921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014106.2	-1	validated	p.S572L	0.257	170	0%	168	44.6%	-	-	benign(0.258)	tolerated(0.08)	neutral(0.327)	NULL
NUSAP1	51203	genome.wustl.edu	37	15	41657722	41657722	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016359.3	+1	validated	p.Q261H	0.008	58	0%	36	27.8%	-	-	benign(0.139)	deleterious(0.02)	neutral(0.395)	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43749128	43749128	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001141980.1	-1	validated	p.L560V	0.991	350	0%	316	39.9%	-	-	benign(0.021)	tolerated(0.3)	neutral(0.030)	NULL
NARG2	79664	genome.wustl.edu	37	15	60760391	60760391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024611.4	-1	validated	p.P93A	1.000	280	0%	349	36.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HERC1	8925	genome.wustl.edu	37	15	63970223	63970223	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003922.3	-1	reviewed	p.R2297S	1.000	322	0%	305	40%	-	-	benign(0.002)	-	-	NULL
LARP6	55323	genome.wustl.edu	37	15	71143982	71143982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_197958.1	-1	validated	p.T93I	0.000	353	0%	273	37.7%	-	-	unknown(0)	-	-	NULL
SIN3A	25942	genome.wustl.edu	37	15	75684776	75684776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001145357.1	-1	reviewed	p.F886L	1.000	292	0%	330	34.5%	-	-	benign(0.352)	deleterious(0.04)	neutral(0.460)	NULL
PTPN9	5780	genome.wustl.edu	37	15	75798047	75798047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002833.2	-1	reviewed	p.E313K	0.799	257	0%	185	42.2%	-	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMSmart_PTPc,superfamily_SSF52799
SGK269	79834	genome.wustl.edu	37	15	77471427	77471427	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024776.2	-1	validated	p.E948Q	1.000	168	0%	285	38.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IREB2	3658	genome.wustl.edu	37	15	78789570	78789570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004136.2	+1	validated	p.D900N	0.924	300	0%	333	34.8%	-	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	superfamily_Aconitase
EFTUD1	79631	genome.wustl.edu	37	15	82554089	82554089	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024580.5	-1	validated	p.Q11E	0.476	547	0%	464	39%	-	-	benign(0)	tolerated(1)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTSL3	57188	genome.wustl.edu	37	15	84373236	84373236	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_207517.2	+1	validated	p.F55	1.000	208	0%	282	47.5%	-	-	-	-	-	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84657473	84657473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_207517.2	+1	validated	p.Q1249H	1.000	272	0%	258	41.5%	-	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIF7	374654	genome.wustl.edu	37	15	90176072	90176072	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198525.2	-1	validated	p.S958R	1.000	50	0%	25	40%	-	-	probably_damaging(0.991)	tolerated(0.58)	neutral(0.449)	NULL
WDR93	56964	genome.wustl.edu	37	15	90255328	90255328	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020212.1	+1	provisional	p.L211	0.914	140	0%	148	35.8%	-	-	-	-	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90328708	90328708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001150.2	-1	reviewed	p.E926Q	0.000	282	0%	178	36.5%	-	-	benign(0.002)	tolerated(0.59)	neutral(0.004)	NULL
IQGAP1	8826	genome.wustl.edu	37	15	91020460	91020460	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003870.3	+1	reviewed	p.I1034M	1.000	71	0%	112	34.8%	-	-	possibly_damaging(0.553)	deleterious(0)	deleterious(0.633)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
IFT140	9742	genome.wustl.edu	37	16	1639743	1639743	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014714.3	-1	validated	p.Q225*	0.000	99	0%	59	40.7%	-	-	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
ZNF75A	7627	genome.wustl.edu	37	16	3367720	3367720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_153028.2	+1	validated	p.H248Y	0.998	99	0%	133	39.1%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GSPT1	2935	genome.wustl.edu	37	16	11990589	11990589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002094.3	-1	validated	p.E164K	1.000	348	0%	362	39%	-	-	benign(0.025)	tolerated(0.3)	neutral(0.030)	NULL
TNFRSF17	608	genome.wustl.edu	37	16	12061435	12061435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001192.2	+1	reviewed	p.L96F	0.031	61	0%	69	40.6%	-	-	probably_damaging(0.962)	deleterious(0.04)	deleterious(0.754)	NULL
DNAH3	55567	genome.wustl.edu	37	16	20999362	20999362	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017539.1	-1	provisional	p.I2209	0.870	280	0.4%	248	36.7%	-	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
SRCAP	10847	genome.wustl.edu	37	16	30749558	30749558	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006662.2	+1	validated	p.Q2733*	1.000	47	0%	29	24.1%	-	-	-	-	-	NULL
ITGAD	3681	genome.wustl.edu	37	16	31422820	31422820	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005353.2	+1	validated	p.I563	0.167	78	0%	57	36.8%	-	-	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ZNF843	283933	genome.wustl.edu	37	16	31447939	31447939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001136509.1	-1	provisional	p.H78Y	0.045	46	0%	18	33.3%	-	-	benign(0.014)	-	-	NULL
LOC100289574	100289574	genome.wustl.edu	37	16	32190813	32190813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002343438.1	-1	model	p.S123R	0.997	58	0%	64	12.5%	-	-	benign(0.009)	tolerated(0.21)	neutral(0.044)	NULL
DNAJA2	10294	genome.wustl.edu	37	16	46998598	46998598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005880.3	-1	reviewed	p.F233L	0.993	473	0%	379	40.6%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
ADCY7	113	genome.wustl.edu	37	16	50342643	50342643	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001114.3	+1	reviewed	p.L667	1.000	25	0%	14	28.6%	-	-	-	-	-	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53671646	53671646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015272.2	-1	reviewed	p.E1061K	1.000	260	0.4%	387	41.3%	-	-	possibly_damaging(0.521)	tolerated(0.6)	neutral(0.180)	NULL
MMP2	4313	genome.wustl.edu	37	16	55522481	55522481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004530.4	+1	reviewed	p.E287K	0.998	68	0%	42	38.1%	-	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMSmart_FN2,HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_Kringle-like,superfamily_SSF55486
GNAO1	2775	genome.wustl.edu	37	16	56362577	56362577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020988.2	+1	validated	p.R113Q	1.000	84	0%	44	54.5%	-	-	benign(0.153)	tolerated(0.93)	neutral(0.013)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
C16orf57	79650	genome.wustl.edu	37	16	58052893	58052893	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024598.2	+1	validated	p.L209	1.000	117	0%	63	41.3%	-	-	-	-	-	HMMPfam_HVSL
MMP15	4324	genome.wustl.edu	37	16	58075771	58075771	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002428.2	+1	reviewed	p.F387	1.000	58	0%	31	38.7%	-	-	-	-	-	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
CDH11	1009	genome.wustl.edu	37	16	65005956	65005956	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001797.2	-1	reviewed	p.Q468*	1.000	110	0%	129	42.6%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CES4A	283848	genome.wustl.edu	37	16	67029616	67029616	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_173815.4	+1	validated	p.I48M	0.145	185	0%	113	33.6%	-	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	HMMPfam_COesterase,superfamily_SSF53474
CTCF	10664	genome.wustl.edu	37	16	67645273	67645273	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006565.2	+1	reviewed	p.Q180*	1.000	139	0%	132	39.4%	-	-	-	-	-	NULL
EDC4	23644	genome.wustl.edu	37	16	67916624	67916624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014329.3	+1	validated	p.R1162Q	0.972	64	0%	44	34.1%	-	-	probably_damaging(0.995)	tolerated(0.34)	deleterious(0.481)	NULL
ZFP90	146198	genome.wustl.edu	37	16	68598161	68598161	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_133458.2	+1	provisional	p.H491D	0.998	139	0%	199	43.7%	-	-	possibly_damaging(0.727)	deleterious(0.01)	deleterious(0.670)	superfamily_C2H2 and C2HC zinc fingers
NFAT5	10725	genome.wustl.edu	37	16	69726449	69726449	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_138713.2	+1	reviewed	p.V907	0.997	108	0%	98	32.7%	-	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70929977	70929977	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032821.2	-1	validated	p.D3018H	0.993	184	0%	229	45.4%	-	-	possibly_damaging(0.479)	deleterious(0)	deleterious(0.603)	NULL
AP1G1	164	genome.wustl.edu	37	16	71773166	71773166	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001030007.1	-1	reviewed	p.S696*	1.000	203	0%	142	41.5%	-	-	-	-	-	NULL
NPIPL2	440348	genome.wustl.edu	37	16	74425781	74425781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000429990	+1	known	p.E379K	0.998	330	0%	216	12%	-	-	possibly_damaging(0.883)	deleterious(0.01)	deleterious(0.750)	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76569522	76569522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_138994.3	+1	validated	p.E873K	1.000	139	0%	127	34.6%	-	-	possibly_damaging(0.894)	deleterious(0.03)	deleterious(0.716)	superfamily_Concanavalin A-like lectins/glucanases
USP10	9100	genome.wustl.edu	37	16	84806215	84806215	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005153.2	+1	reviewed	p.F689	1.000	348	0%	263	41.8%	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
DPEP1	1800	genome.wustl.edu	37	16	89704622	89704622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001128141.1	+1	validated	p.L410V	0.001	57	0%	29	34.5%	-	-	unknown(0)	deleterious(0)	-	NULL
NXN	64359	genome.wustl.edu	37	17	729282	729282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022463.3	-1	validated	p.P133S	1.000	383	0.3%	320	38.4%	-	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Thioredoxin-like
KIAA0664	23277	genome.wustl.edu	37	17	2603737	2603737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015229.3	-1	validated	p.T364M	0.990	49	0%	15	33.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ZZEF1	23140	genome.wustl.edu	37	17	4017638	4017638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015113.3	-1	validated	p.S274L	0.035	211	0%	248	36.7%	-	-	benign(0.229)	tolerated(0.18)	neutral(0.079)	HMMPfam_APC10,superfamily_Galactose-binding domain-like
SLC52A1	55065	genome.wustl.edu	37	17	4937394	4937394	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001104577.1	-1	validated	p.V130	1.000	175	0%	109	37.6%	-	-	-	-	-	NULL
ACADVL	37	genome.wustl.edu	37	17	7125548	7125548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000018.2	+1	reviewed	p.D269N	1.000	64	0%	46	28.3%	-	-	benign(0.253)	tolerated(0.08)	neutral(0.326)	superfamily_Acyl-CoA dehydrogenase NM domain-like
SLC35G6	643664	genome.wustl.edu	37	17	7385341	7385341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001102614.1	+1	provisional	p.S13Y	1.000	173	0%	81	49.4%	-	-	benign(0.002)	tolerated(0.86)	neutral(0.001)	NULL
TNFSF12-TNFSF13	407977	genome.wustl.edu	37	17	7463713	7463713	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_172089.2	+1	reviewed	p.R264P	1.000	79	0%	51	19.6%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TNF,HMMSmart_TNF,superfamily_TNF_like
DNAH2	146754	genome.wustl.edu	37	17	7695357	7695357	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020877.2	+1	validated	p.L2341	1.000	175	0%	99	40.4%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ALOXE3	59344	genome.wustl.edu	37	17	8021373	8021373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000380149	-1	known	p.S135C	0.010	68	0%	37	43.2%	-	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
AURKB	9212	genome.wustl.edu	37	17	8108252	8108252	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004217.2	-1	validated	p.H324	1.000	76	0%	47	38.3%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RANGRF	29098	genome.wustl.edu	37	17	8192118	8192118	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016492.4	+1	reviewed	p.T4	0.051	87	0%	48	43.8%	-	-	-	-	-	superfamily_Mog1p/PsbP-like
MYH10	4628	genome.wustl.edu	37	17	8438804	8438804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005964.1	-1	validated	p.D589H	0.999	101	0%	125	24.8%	-	-	possibly_damaging(0.694)	deleterious(0.02)	deleterious(0.632)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH8	4626	genome.wustl.edu	37	17	10304087	10304087	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002472.2	-1	reviewed	p.E1119Q	1.000	149	0%	111	40.5%	-	-	possibly_damaging(0.945)	tolerated(0.13)	deleterious(0.642)	HMMPfam_Myosin_tail_1
TRPV2	51393	genome.wustl.edu	37	17	16326862	16326862	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000455666	+1	known	p.R193C	0.000	35	0%	19	36.8%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
MYO15A	51168	genome.wustl.edu	37	17	18045516	18045516	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016239.3	+1	reviewed	p.L1925	0.995	58	0%	31	45.2%	-	-	-	-	-	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
POLDIP2	26073	genome.wustl.edu	37	17	26675217	26675217	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015584.3	-1	reviewed	p.D344H	1.000	245	0%	154	45.5%	-	-	-	-	-	superfamily_ApaG-like (Pfam 04379)
KIAA0100	9703	genome.wustl.edu	37	17	26961567	26961567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014680.2	-1	validated	p.R1013Q	1.000	45	0%	50	42%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SUPT6H	6830	genome.wustl.edu	37	17	27002162	27002162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003170.3	+1	validated	p.E174K	1.000	139	0%	131	38.2%	-	-	unknown(0)	tolerated(0.47)	-	NULL
EFCAB5	374786	genome.wustl.edu	37	17	28407207	28407207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198529.3	+1	validated	p.D1049N	1.000	290	0%	280	41.8%	-	-	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	NULL
SLFN11	91607	genome.wustl.edu	37	17	33679567	33679567	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001104587.1	-1	validated	p.L838	0.000	351	0.3%	336	37.8%	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TADA2A	6871	genome.wustl.edu	37	17	35834664	35834664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001488.3	+1	reviewed	p.R359K	1.000	217	0.5%	228	39%	-	-	probably_damaging(0.971)	tolerated(0.13)	deleterious(0.665)	HMMPfam_SWIRM
GPR179	440435	genome.wustl.edu	37	17	36483031	36483031	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001004334.2	-1	validated	p.E2141Q	0.000	150	0%	106	47.2%	-	-	probably_damaging(0.972)	tolerated(0.13)	deleterious(0.666)	NULL
CISD3	284106	genome.wustl.edu	37	17	36889705	36889705	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001136498.1	+1	validated	p.L127	0.994	25	0%	18	27.8%	-	-	-	-	-	NULL
CDK12	51755	genome.wustl.edu	37	17	37627688	37627688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_016507.2	+1	validated	p.P535S	1.000	327	0%	307	47.9%	-	-	unknown(0)	deleterious(0.01)	-	NULL
TOP2A	7153	genome.wustl.edu	37	17	38562675	38562675	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001067.2	-1	reviewed	p.F638	1.000	314	0%	352	33.5%	-	-	-	-	-	HMMSmart_SM00433,superfamily_Type II DNA topoisomerase
SMARCE1	6605	genome.wustl.edu	37	17	38785228	38785228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003079.4	-1	reviewed	p.E349K	1.000	160	0%	197	34%	-	-	possibly_damaging(0.722)	tolerated(0.54)	neutral(0.270)	NULL
ACLY	47	genome.wustl.edu	37	17	40065317	40065317	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001096.2	-1	reviewed	p.L181	1.000	160	0%	120	42.5%	-	-	-	-	-	superfamily_SSF56059
LRRC46	90506	genome.wustl.edu	37	17	45913811	45913811	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033413.3	+1	validated	p.E189Q	0.993	150	0%	83	43.4%	-	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
HOXB3	3213	genome.wustl.edu	37	17	46629749	46629749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002146.4	-1	reviewed	p.D30H	1.000	21	0%	11	45.5%	-	-	possibly_damaging(0.537)	deleterious(0.05)	deleterious(0.527)	NULL
ABCC3	8714	genome.wustl.edu	37	17	48757229	48757229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003786.3	+1	reviewed	p.R1259K	1.000	197	0%	153	42.5%	-	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ENSG00000154251	0	genome.wustl.edu	37	17	66121864	66121864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000284414	-1	known	p.F216L	0.139	8	0.000	23	0.478	-	-	-	-	-	NULL
ABCA8	10351	genome.wustl.edu	37	17	66924146	66924146	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007168.2	-1	reviewed	p.S395*	0.003	183	0%	187	32.6%	-	-	-	-	-	NULL
KCNJ2	3759	genome.wustl.edu	37	17	68172159	68172159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000891.2	+1	reviewed	p.E327K	1.000	80	0%	112	44.6%	-	-	benign(0.144)	tolerated(0.28)	neutral(0.044)	HMMPfam_IRK,superfamily_E set domains
HGS	9146	genome.wustl.edu	37	17	79660922	79660922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004712.3	+1	provisional	p.S288L	0.332	37	0%	20	20%	-	-	benign(0)	tolerated(1)	-	NULL
EMILIN2	84034	genome.wustl.edu	37	18	2892001	2892001	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032048.2	+1	validated	p.Q626*	0.003	159	0%	145	33.8%	-	-	-	-	-	NULL
LOC100288932	100288932	genome.wustl.edu	37	18	10471575	10471575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	XM_002344139.1	-1	model	p.E174K	1.000	183	0%	115	40.9%	-	-	-	-	-	NULL
C18orf1	753	genome.wustl.edu	37	18	13645543	13645543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_181481.3	+1	validated	p.H270Y	1.000	63	0%	29	37.9%	-	-	benign(0.137)	tolerated(0.26)	neutral(0.045)	NULL
LAMA3	3909	genome.wustl.edu	37	18	21447865	21447865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198129.1	+1	reviewed	p.R1584Q	0.215	86	0%	57	31.6%	-	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Laminin_B,HMMSmart_SM00281
KCTD1	284252	genome.wustl.edu	37	18	24056482	24056482	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001142730.1	-1	validated	p.F710L	1.000	227	0%	276	36.2%	-	-	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
ASXL3	80816	genome.wustl.edu	37	18	31324895	31324895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_030632.1	+1	provisional	p.A1695T	0.000	112	0%	76	11.8%	-	-	benign(0.06)	deleterious(0.04)	neutral(0.353)	NULL
NOL4	8715	genome.wustl.edu	37	18	31709966	31709966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003787.3	-1	validated	p.E95K	1.000	246	0%	303	38.6%	-	-	possibly_damaging(0.647)	tolerated(0.07)	deleterious(0.546)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56149107	56149107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_052947.3	-1	validated	p.S2154F	0.023	405	0%	500	41.8%	-	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
SERPINB4	6318	genome.wustl.edu	37	18	61310448	61310448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002974.2	-1	validated	p.L57F	0.443	189	0%	462	39.4%	-	-	probably_damaging(0.991)	tolerated(0.14)	deleterious(0.694)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
TSHZ1	10194	genome.wustl.edu	37	18	72999690	72999690	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005786.4	+1	reviewed	p.K731	1.000	32	0%	16	62.5%	-	-	-	-	-	NULL
ATP9B	374868	genome.wustl.edu	37	18	77037154	77037154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198531.3	+1	validated	p.E457K	1.000	283	0%	187	37.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like
LPPR3	79948	genome.wustl.edu	37	19	821527	821527	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024888.1	-1	provisional	p.P11	0.190	21	0.000	4	1.000	-	-	-	-	-	NULL
DPP9	91039	genome.wustl.edu	37	19	4684774	4684774	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_139159.4	-1	reviewed	p.L693	0.972	154	0%	62	38.7%	-	-	-	-	-	HMMPfam_Peptidase_S9,superfamily_SSF53474
ZNF557	79230	genome.wustl.edu	37	19	7081382	7081382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001044387.1	+1	validated	p.D87N	0.002	111	0%	123	44.7%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
CERS4	79603	genome.wustl.edu	37	19	8326716	8326716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024552.2	+1	validated	p.M331I	0.000	151	0%	93	41.9%	-	-	benign(0)	tolerated(1)	-	HMMSmart_SM00724
MUC16	94025	genome.wustl.edu	37	19	9085582	9085582	+	Missense_Mutation	SNP	G	G	C	rs34220940		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024690.2	-1	validated	p.S2078C	0.010	86	0%	181	42.5%	-	-	unknown(0)	-	-	NULL
ZNF441	126068	genome.wustl.edu	37	19	11890918	11890918	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152355.2	+1	validated	p.V93	0.001	153	0%	155	41.3%	-	-	-	-	-	NULL
ZNF69	7620	genome.wustl.edu	37	19	12016170	12016170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000429654	+1	known	p.R320C	0.028	209	1%	303	41.6%	-	-	benign(0.173)	deleterious(0)	neutral(0.461)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF69	7620	genome.wustl.edu	37	19	12016771	12016771	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000429654	+1	known	p.S520C	0.012	108	0%	154	33.8%	-	-	possibly_damaging(0.89)	tolerated(0.14)	deleterious(0.599)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CLEC17A	388512	genome.wustl.edu	37	19	14707788	14707788	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_207390.2	+1	validated	p.F165L	0.539	368	0%	288	35.1%	-	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
CYP4F3	4051	genome.wustl.edu	37	19	15770099	15770099	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000896.2	+1	reviewed	p.F489	0.977	86	0%	32	37.5%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F12	66002	genome.wustl.edu	37	19	15791263	15791263	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_023944.2	+1	reviewed	p.P153	0.494	92	0%	75	48%	-	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F2	8529	genome.wustl.edu	37	19	15996795	15996795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001082.3	-1	reviewed	p.E352Q	1.000	260	0%	176	34.7%	-	-	benign(0.284)	tolerated(0.44)	neutral(0.099)	HMMPfam_p450,superfamily_Cytochrome_P450
CPAMD8	27151	genome.wustl.edu	37	19	17108138	17108138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015692.2	-1	validated	p.S340F	1.000	22	0%	20	20%	-	-	probably_damaging(0.998)	tolerated(0.7)	deleterious(0.476)	NULL
USE1	55850	genome.wustl.edu	37	19	17326826	17326826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018467.3	+1	validated	p.E60K	0.999	102	0%	56	41.1%	-	-	probably_damaging(0.976)	tolerated(0.05)	deleterious(0.763)	HMMPfam_Use1
ELL	8178	genome.wustl.edu	37	19	18632850	18632850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006532.3	-1	validated	p.E6K	1.000	38	0%	13	30.8%	-	-	possibly_damaging(0.798)	deleterious(0.01)	deleterious(0.706)	HMMPfam_ELL
GPI	2821	genome.wustl.edu	37	19	34859601	34859601	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000175.3	+1	reviewed	p.F132	1.000	148	0%	81	33.3%	-	-	-	-	-	HMMPfam_PGI,superfamily_SSF53697
ZNF599	148103	genome.wustl.edu	37	19	35250968	35250968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001007248.2	-1	validated	p.M246I	0.618	127	0%	166	46.4%	-	-	benign(0.013)	deleterious(0.03)	neutral(0.365)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DMKN	93099	genome.wustl.edu	37	19	36004008	36004008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033317.3	-1	reviewed	p.G124R	0.003	159	0.6%	80	36.2%	-	-	benign(0.279)	deleterious(0)	deleterious(0.475)	NULL
ZNF146	7705	genome.wustl.edu	37	19	36728093	36728093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001099638.1	+1	validated	p.Q251E	0.193	224	0%	197	42.1%	-	-	possibly_damaging(0.685)	tolerated(0.1)	deleterious(0.531)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAP4K1	11184	genome.wustl.edu	37	19	39090601	39090601	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_007181.4	-1	validated	p.V545L	0.998	201	0%	122	47.5%	-	-	benign(0)	tolerated(1)	-	HMMPfam_CNH,HMMSmart_CNH
PLEKHG2	64857	genome.wustl.edu	37	19	39904750	39904750	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022835.2	+1	validated	p.L8	0.001	119	0%	57	47.4%	-	-	-	-	-	NULL
FBL	2091	genome.wustl.edu	37	19	40328355	40328355	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001436.3	-1	reviewed	p.L226	0.982	167	0%	92	51.1%	-	-	-	-	-	HMMPfam_Fibrillarin,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
HIPK4	147746	genome.wustl.edu	37	19	40886785	40886785	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144685.3	-1	provisional	p.L371	0.998	20	0%	12	41.7%	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
SHKBP1	92799	genome.wustl.edu	37	19	41092786	41092786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_138392.3	+1	validated	p.Q424H	1.000	47	0%	28	39.3%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ZNF526	116115	genome.wustl.edu	37	19	42728661	42728661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_133444.1	+1	provisional	p.E36Q	0.889	145	0%	74	47.3%	-	-	possibly_damaging(0.467)	tolerated(0.07)	deleterious(0.473)	NULL
ZNF526	116115	genome.wustl.edu	37	19	42729049	42729049	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_133444.1	+1	provisional	p.S165C	0.014	85	0%	53	39.6%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42858853	42858853	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001410.2	+1	validated	p.L1308	1.000	58	0%	15	46.7%	-	-	-	-	-	NULL
ENSG00000245602	0	genome.wustl.edu	37	19	47999013	47999013	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000500835	+1	known	NULL	0.002	59	0%	45	48.9%	-	-	-	-	-	-
CCDC114	93233	genome.wustl.edu	37	19	48815311	48815311	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144577.3	-1	validated	p.I104	0.015	218	0.5%	117	42.7%	-	-	-	-	-	NULL
PPFIA3	8541	genome.wustl.edu	37	19	49643266	49643266	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003660.2	+1	reviewed	p.I763M	1.000	160	0%	112	46.4%	-	-	benign(0.216)	deleterious(0)	neutral(0.466)	NULL
ZNF600	162966	genome.wustl.edu	37	19	53269127	53269127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198457.2	-1	validated	p.H628Y	0.042	256	0%	339	38.6%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF320	162967	genome.wustl.edu	37	19	53385108	53385108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_207333.2	-1	validated	p.E91Q	0.000	252	0%	352	39.5%	-	-	possibly_damaging(0.55)	tolerated(0.68)	neutral(0.189)	NULL
PRKCG	5582	genome.wustl.edu	37	19	54407963	54407963	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002739.3	+1	reviewed	p.S577	0.796	100	0%	72	40.3%	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
NLRP7	199713	genome.wustl.edu	37	19	55449523	55449523	+	Nonsense_Mutation	SNP	G	G	C	rs104895555		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001127255.1	-1	reviewed	p.S673*	0.082	86	0%	72	45.8%	-	-	-	-	-	superfamily_RNI-like
NLRP5	126206	genome.wustl.edu	37	19	56539724	56539724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_153447.4	+1	reviewed	p.E709K	0.055	96	0%	66	48.5%	-	-	benign(0.415)	tolerated(0.51)	neutral(0.144)	NULL
PEG3	5178	genome.wustl.edu	37	19	57326231	57326231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006210.2	-1	reviewed	p.M1193I	0.000	175	0%	160	36.9%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	superfamily_C2H2 and C2HC zinc fingers
ZNF543	125919	genome.wustl.edu	37	19	57840388	57840388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_213598.3	+1	validated	p.A520T	0.000	155	0%	134	11.2%	-	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF549	256051	genome.wustl.edu	37	19	58049672	58049672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_153263.1	+1	provisional	p.E421K	0.000	132	0%	142	37.3%	-	-	benign(0.062)	tolerated(0.82)	neutral(0.005)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SMOX	54498	genome.wustl.edu	37	20	4162828	4162828	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_175839.1	+1	reviewed	p.I234	1.000	29	0%	21	33.3%	-	-	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
RIN2	54453	genome.wustl.edu	37	20	19955572	19955572	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018993.2	+1	reviewed	p.T301	0.005	70	0%	58	46.6%	-	-	-	-	-	NULL
C20orf3	57136	genome.wustl.edu	37	20	24959457	24959457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020531.2	-1	validated	p.E92Q	0.850	149	0%	85	41.2%	-	-	benign(0.208)	tolerated(0.08)	neutral(0.320)	superfamily_Calcium-dependent phosphotriesterase
REM1	28954	genome.wustl.edu	37	20	30064257	30064257	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014012.4	+1	reviewed	p.L3	0.994	212	0%	112	37.5%	-	-	-	-	-	NULL
ASXL1	171023	genome.wustl.edu	37	20	31019209	31019209	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015338.5	+1	reviewed	p.I268	0.956	332	0.3%	232	40.5%	-	-	-	-	-	NULL
EFCAB8	388795	genome.wustl.edu	37	20	31506195	31506195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000440534	+1	known	p.E697K	0.000	79	0%	52	28.8%	-	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	NULL
ZNF341	84905	genome.wustl.edu	37	20	32336731	32336731	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032819.3	+1	validated	p.I114M	1.000	146	0%	94	35.1%	-	-	unknown(0)	deleterious(0)	-	NULL
ZNF341	84905	genome.wustl.edu	37	20	32358025	32358025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032819.3	+1	validated	p.D510N	1.000	58	0%	28	42.9%	-	-	possibly_damaging(0.527)	tolerated(0.32)	neutral(0.202)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CPNE1	8904	genome.wustl.edu	37	20	34220147	34220147	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003915.4	-1	reviewed	p.Q137*	1.000	269	0%	238	42.4%	-	-	-	-	-	superfamily_C2_CaLB
NFS1	9054	genome.wustl.edu	37	20	34286509	34286509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_021100.3	-1	reviewed	p.G34E	0.000	40	0%	28	57.1%	-	-	benign(0.006)	tolerated(1)	-	NULL
C20orf24	55969	genome.wustl.edu	37	20	35236138	35236138	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_199483.1	+1	validated	p.I45	1.000	754	0%	594	40.6%	-	-	-	-	-	HMMPfam_Rab5ip
PLCG1	5335	genome.wustl.edu	37	20	39801188	39801188	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002660.2	+1	reviewed	p.I1011M	1.000	121	0%	91	39.6%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
NCOA3	8202	genome.wustl.edu	37	20	46262937	46262937	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_181659.2	+1	reviewed	p.Q370H	1.000	127	0%	137	44.5%	-	-	probably_damaging(0.997)	tolerated(0.33)	deleterious(0.490)	superfamily_PYP-like sensor domain (PAS domain)
PREX1	57580	genome.wustl.edu	37	20	47248900	47248900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020820.3	-1	reviewed	p.P1481S	0.098	54	0%	20	30%	-	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61510729	61510729	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_033081.1	-1	reviewed	p.R2193	0.993	12	0.000	7	0.714	-	-	-	-	-	NULL
RTEL1	51750	genome.wustl.edu	37	20	62293870	62293870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000508582	+1	known	p.P147S	0.000	77	0%	38	52.6%	-	-	unknown(0)	-	-	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
LTN1	26046	genome.wustl.edu	37	21	30329187	30329187	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_015565.2	-1	validated	p.K992N	0.252	217	0%	361	40.7%	-	-	benign(0.002)	tolerated(0.6)	neutral(0.004)	NULL
KRTAP15-1	254950	genome.wustl.edu	37	21	31812702	31812702	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_181623.1	+1	provisional	p.L19	0.000	152	0%	151	29.1%	-	-	-	-	-	HMMPfam_PMG
SCAF4	57466	genome.wustl.edu	37	21	33057472	33057472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020706.2	-1	reviewed	p.R793T	1.000	153	0%	125	42.4%	-	-	unknown(0)	tolerated(0.05)	-	NULL
COL18A1	80781	genome.wustl.edu	37	21	46900753	46900753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_130444.2	+1	reviewed	p.P946L	0.276	26	0.000	8	0.750	-	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
POTEH	23784	genome.wustl.edu	37	22	16266972	16266972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001136213.1	-1	provisional	p.E493Q	0.000	1731	0%	2006	11%	-	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
OR11H1	81061	genome.wustl.edu	37	22	16449369	16449369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005239.1	-1	provisional	p.L146F	0.980	357	0%	513	22.2%	-	-	benign(0.004)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
GAB4	128954	genome.wustl.edu	37	22	17443651	17443651	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001037814.1	-1	provisional	p.S566*	0.487	78	0%	39	41%	-	-	-	-	-	NULL
SMARCB1	6598	genome.wustl.edu	37	22	24143146	24143146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003073.3	+1	reviewed	p.K126N	1.000	113	0%	75	48%	-	-	benign(0.275)	deleterious(0.01)	neutral(0.435)	NULL
SMTN	6525	genome.wustl.edu	37	22	31500443	31500443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_134270.1	+1	reviewed	p.K938N	1.000	32	0%	17	52.9%	-	-	possibly_damaging(0.457)	deleterious(0)	deleterious(0.595)	NULL
EIF4ENIF1	56478	genome.wustl.edu	37	22	31843430	31843430	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_019843.3	-1	reviewed	p.R657T	1.000	108	0%	120	35.8%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_EIF4E-T
DEPDC5	9681	genome.wustl.edu	37	22	32242923	32242923	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_014662.2	+1	validated	p.S1033C	0.999	79	0%	53	58.5%	-	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
TCF20	6942	genome.wustl.edu	37	22	42608700	42608700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005650.1	-1	reviewed	p.S871C	1.000	85	0%	72	40.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TTC38	55020	genome.wustl.edu	37	22	46671212	46671212	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017931.2	+1	validated	p.L145	1.000	307	0%	239	42.3%	-	-	-	-	-	superfamily_SSF48452
TBL1X	6907	genome.wustl.edu	37	X	9682941	9682941	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001139466.1	+1	reviewed	e14-1	1.000	107	0%	68	30.9%	-	-	-	-	-	-
ARHGAP6	395	genome.wustl.edu	37	X	11682730	11682730	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_013427.2	-1	reviewed	p.E73D	0.026	30	0%	15	60%	-	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20033383	20033383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152780.3	-1	validated	p.Q528H	0.995	327	0%	414	40.6%	-	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_MAP7
ZNF645	158506	genome.wustl.edu	37	X	22292160	22292160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_152577.2	+1	provisional	p.S351F	0.016	245	0%	265	42.3%	-	-	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	NULL
SYTL5	94122	genome.wustl.edu	37	X	37985947	37985947	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_138780.2	+1	reviewed	p.L719	1.000	135	0%	136	41.9%	-	-	-	-	-	NULL
DDX3X	1654	genome.wustl.edu	37	X	41202567	41202567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001356.3	+1	reviewed	p.I214M	1.000	263	0.4%	281	42.7%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX3X	1654	genome.wustl.edu	37	X	41206602	41206612	+	Frame_Shift_Del	DEL	CGACAAAGTAG	CGACAAAGTAG	-	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	CGACAAAGTAG	CGACAAAGTAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001356.3	+1	reviewed	p.Q604fs	1.000:1.000:0.894:1.000:1.000:0.999:1.000:1.000:0.929:0.998:0.998	-	-	-	-	-	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
NYX	60506	genome.wustl.edu	37	X	41333723	41333723	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_022567.2	+1	reviewed	p.C339W	0.973	24	0%	12	50%	-	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMSmart_LRRCT,superfamily_SSF52058
CASK	8573	genome.wustl.edu	37	X	41420832	41420832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_003688.3	-1	reviewed	p.E550K	1.000	173	0%	323	11.5%	-	-	possibly_damaging(0.575)	tolerated(0.06)	deleterious(0.520)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
SLC9A7	84679	genome.wustl.edu	37	X	46502767	46502767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032591.1	-1	reviewed	p.R506H	1.000	67	0%	81	38.3%	-	-	benign(0.012)	deleterious(0.02)	neutral(0.384)	HMMPfam_Na_H_Exchanger
ZNF630	57232	genome.wustl.edu	37	X	47918822	47918822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001037735.2	-1	validated	p.H337Y	0.997	101	0%	161	39.8%	-	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
GRIPAP1	56850	genome.wustl.edu	37	X	48853752	48853752	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_020137.3	-1	reviewed	p.L72	1.000	135	0%	132	42.4%	-	-	-	-	-	NULL
PRICKLE3	4007	genome.wustl.edu	37	X	49034794	49034794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_006150.3	-1	reviewed	p.A199T	0.937	80	0%	53	41.5%	-	-	possibly_damaging(0.906)	tolerated(0.06)	deleterious(0.682)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1
CACNA1F	778	genome.wustl.edu	37	X	49061797	49061797	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005183.2	-1	reviewed	p.A1912P	1.000	56	0%	29	31%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MAGED1	9500	genome.wustl.edu	37	X	51640666	51640666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001005333.1	+1	reviewed	p.E560K	1.000	291	0%	203	40.9%	-	-	unknown(0)	tolerated(0.08)	-	HMMPfam_MAGE
KDM5C	8242	genome.wustl.edu	37	X	53223485	53223490	+	In_Frame_Del	DEL	CGCGGC	CGCGGC	-	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	CGCGGC	CGCGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004187.3	-1	reviewed	p.GR1290in_frame_del	1.000:0.982:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FAM120C	54954	genome.wustl.edu	37	X	54185831	54185831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_017848.4	-1	validated	p.M306I	0.998	150	0%	162	38.3%	-	-	benign(0.004)	tolerated(0.17)	neutral(0.059)	NULL
FGD1	2245	genome.wustl.edu	37	X	54496462	54496462	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_004463.2	-1	reviewed	p.Q363L	1.000	71	0%	36	47.2%	-	-	benign(0)	tolerated(0.05)	neutral(0.345)	superfamily_DH-domain
ALAS2	212	genome.wustl.edu	37	X	55054238	55054238	+	Missense_Mutation	SNP	C	C	G	rs189947718	by1000genomes	TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001037968.3	-1	reviewed	p.M1I	0.001	287	0%	300	42.7%	-	-	benign(0.001)	-	-	NULL
ASB12	142689	genome.wustl.edu	37	X	63445468	63445468	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_130388.2	-1	reviewed	p.L12	1.000	114	0%	96	37.5%	-	-	-	-	-	NULL
DGAT2L6	347516	genome.wustl.edu	37	X	69420156	69420156	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198512.1	+1	provisional	p.H107D	1.000	258	0%	359	39%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGAT
SLC7A3	84889	genome.wustl.edu	37	X	70147824	70147824	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001048164.2	-1	reviewed	p.V289	0.998	323	0%	248	36.7%	-	-	-	-	-	HMMPfam_AA_permease
MED12	9968	genome.wustl.edu	37	X	70346843	70346843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005120.2	+1	reviewed	p.E904K	1.000	222	0%	145	38.6%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70368014	70368014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018977.3	+1	reviewed	p.E139K	1.000	65	0%	29	34.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_SSF53474
PHKA1	5255	genome.wustl.edu	37	X	71802449	71802449	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_002637.3	-1	reviewed	e31-1	1.000	109	0%	121	45.5%	-	-	-	-	-	-
MAGEE2	139599	genome.wustl.edu	37	X	75003800	75003800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_138703.4	-1	validated	p.F363L	0.995	89	0%	131	34.4%	-	-	benign(0.425)	tolerated(0.1)	neutral(0.424)	HMMPfam_MAGE
MAGT1	84061	genome.wustl.edu	37	X	77112895	77112895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_032121.5	-1	reviewed	p.E196K	1.000	253	0%	243	40.3%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_OST3_OST6,superfamily_Thioredoxin-like
HDX	139324	genome.wustl.edu	37	X	83581275	83581275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144657.4	-1	validated	p.E620K	1.000	188	0%	378	38.4%	-	-	benign(0.39)	deleterious(0.02)	deleterious(0.508)	NULL
BTK	695	genome.wustl.edu	37	X	100630195	100630195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000061.2	-1	reviewed	p.K26N	1.000	327	0%	423	36.9%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
NRK	203447	genome.wustl.edu	37	X	105169015	105169015	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_198465.2	+1	validated	p.L1102	0.114	84	0%	152	41.4%	-	-	-	-	-	NULL
IL13RA2	3598	genome.wustl.edu	37	X	114251804	114251804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000640.2	-1	reviewed	p.C10Y	0.002	163	0%	267	31.1%	-	-	possibly_damaging(0.504)	tolerated(0.33)	neutral(0.193)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117706307	117706307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_144658.3	+1	validated	p.E353Q	1.000	199	0%	256	38.7%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
PHF6	84295	genome.wustl.edu	37	X	133511652	133511652	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001015877.1	+1	reviewed	p.S2*	1.000	145	0%	150	42.7%	-	-	-	-	-	NULL
FHL1	2273	genome.wustl.edu	37	X	135290662	135290662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001449.4	+1	reviewed	p.D184N	1.000	144	0%	130	40.8%	-	-	benign(0.041)	deleterious(0)	neutral(0.447)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MAP7D3	79649	genome.wustl.edu	37	X	135303101	135303101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024597.3	-1	reviewed	p.S770L	0.000	371	0%	376	37.2%	-	-	benign(0.04)	tolerated(0.16)	neutral(0.062)	NULL
MCF2	4168	genome.wustl.edu	37	X	138667242	138667242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001099855.1	-1	reviewed	p.E970Q	1.000	191	0%	529	39.7%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140984703	140984703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_138702.1	+1	reviewed	p.L387V	0.011	261	0%	220	41.4%	-	-	unknown(0)	tolerated(0.42)	-	NULL
GABRQ	55879	genome.wustl.edu	37	X	151821187	151821187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_018558.2	+1	reviewed	p.E448K	0.259	81	0%	51	43.1%	-	-	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
SLC6A8	6535	genome.wustl.edu	37	X	152959567	152959567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000328897	+1	known	p.E454K	0.007	69	0%	27	44.4%	-	-	benign(0.036)	deleterious(0)	neutral(0.447)	HMMPfam_SNF
HCFC1	3054	genome.wustl.edu	37	X	153215749	153215749	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	ENST00000444191	-1	known	p.R559C	0.151	165	0%	57	45.6%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FLNA	2316	genome.wustl.edu	37	X	153587496	153587496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_001110556.1	-1	reviewed	p.D1444N	1.000	77	0%	30	30%	-	-	possibly_damaging(0.952)	tolerated(0.13)	deleterious(0.648)	HMMSmart_SM00557,superfamily_E set domains
F8	2157	genome.wustl.edu	37	X	154185326	154185326	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_000132.3	-1	reviewed	p.S553C	0.996	404	0%	427	42.4%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	superfamily_Cupredoxins
BRCC3	79184	genome.wustl.edu	37	X	154345003	154345003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_024332.2	+1	reviewed	p.S258L	1.000	268	0%	418	37.6%	-	-	possibly_damaging(0.832)	tolerated(0.67)	neutral(0.320)	NULL
SPRY3	10251	genome.wustl.edu	37	X	155004349	155004349	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11R-01A-11D-A122-09	TCGA-B5-A11R-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ef2675cf-4d5b-4dcd-a0c9-c0c67059ea34	74ff4e7e-9b8b-40cb-8d05-bf5c2ac2cdc0	NM_005840.1	+1	validated	p.K272N	0.962	163	0%	120	32.5%	-	-	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
