Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ENO1	2023	genome.wustl.edu	37	1	8927218	8927218	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001428.2	-1	reviewed	p.I134	0.123	59	0%	77	66.2%	1071	78.7%	-	-	-	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like
VPS13D	55187	genome.wustl.edu	37	1	12336999	12336999	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015378.2	+1	reviewed	p.T1118	0.993	114	0%	137	70.1%	2	0%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16255142	16255143	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015001.2	+1	reviewed	p.R806fs	0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
C1orf50	79078	genome.wustl.edu	37	1	43240883	43240883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_024097.2	+1	predicted	p.W140R	1.000	62	0%	95	32.6%	25	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2452
FAF1	11124	genome.wustl.edu	37	1	51121137	51121137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007051.2	-1	reviewed	p.P241S	1.000	291	0%	421	38%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ubiquitin-like
PRPF38A	84950	genome.wustl.edu	37	1	52879631	52879631	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_032864.3	+1	validated	p.R230	1.000	96	0%	107	41.1%	64	43.7%	-	-	-	NULL
ANGPTL3	27329	genome.wustl.edu	37	1	63069702	63069702	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014495.2	+1	reviewed	p.R332*	1.000	280	0.7%	268	41.8%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
DOCK7	85440	genome.wustl.edu	37	1	63084454	63084454	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_033407.2	-1	validated	p.P535	0.966	247	0%	344	31.4%	5	0%	-	-	-	NULL
LRRC8C	84230	genome.wustl.edu	37	1	90179730	90179730	+	Missense_Mutation	SNP	C	C	T	rs150400983		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_032270.4	+1	validated	p.T534I	1.000	174	0%	192	41.7%	22	22.7%	benign(0.051)	tolerated(0.39)	neutral(0.019)	superfamily_L domain-like
NTNG1	22854	genome.wustl.edu	37	1	107867388	107867388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001113226.1	+1	validated	p.Y244C	1.000	111	0%	166	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_N,HMMSmart_SM00136
CSDE1	7812	genome.wustl.edu	37	1	115262222	115262222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001130523.1	-1	validated	p.A747P	1.000	147	0%	179	38%	347	31.7%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
RPRD2	23248	genome.wustl.edu	37	1	150445500	150445500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015203.3	+1	validated	p.G1359V	1.000	42	0%	28	53.6%	27	33.3%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
ADAMTSL4	54507	genome.wustl.edu	37	1	150525534	150525534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_019032.4	+1	reviewed	p.P80L	0.000	26	0%	19	26.3%	0	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TCHH	7062	genome.wustl.edu	37	1	152084028	152084030	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007113.2	-1	provisional	p.E555in_frame_del	0.004:0.005:0.002	-	-	-	-	-	-	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152191918	152191918	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001009931.1	-1	validated	p.H729	0.000	400	0%	519	33.9%	0	-	-	-	-	NULL
IL6R	3570	genome.wustl.edu	37	1	154427026	154427026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000565.2	+1	reviewed	p.G377*	0.227	263	0%	328	39.9%	0	-	-	-	-	NULL
NES	10763	genome.wustl.edu	37	1	156639576	156639576	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006617.1	-1	reviewed	p.P1468	0.313	77	0%	74	33.8%	43	16.2%	-	-	-	NULL
PYHIN1	149628	genome.wustl.edu	37	1	158943452	158943452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_152501.3	+1	validated	p.P459T	0.000	346	0%	447	37.1%	1	0%	possibly_damaging(0.949)	-	-	NULL
TSEN15	116461	genome.wustl.edu	37	1	184023536	184023536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_052965.2	+1	validated	p.V62I	1.000	676	0%	857	34.8%	26	34.6%	benign(0)	tolerated(0.94)	-	HMMPfam_Sen15
SLC26A9	115019	genome.wustl.edu	37	1	205897122	205897122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_134325.2	-1	reviewed	p.A337T	1.000	57	0%	52	30.8%	0	-	benign(0.38)	deleterious(0.04)	deleterious(0.470)	HMMPfam_Sulfate_transp
PPP2R5A	5525	genome.wustl.edu	37	1	212506857	212506857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006243.2	+1	reviewed	p.R133C	1.000	309	0.3%	354	35.6%	25	52%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B56,superfamily_ARM repeat
COLEC11	78989	genome.wustl.edu	37	2	3652002	3652002	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_024027.3	+1	validated	p.H24	0.005	173	0%	190	34.2%	1	0%	-	-	-	NULL
DNMT3A	1788	genome.wustl.edu	37	2	25497907	25497907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_022552.3	-1	reviewed	p.R181H	1.000	25	0%	15	46.7%	4	25%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PLB1	151056	genome.wustl.edu	37	2	28761170	28761170	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000404858	+1	known	p.R190Q	0.003	106	0%	126	42.1%	1	0%	-	-	-	NULL
CD207	50489	genome.wustl.edu	37	2	71061046	71061046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015717.2	-1	validated	p.S99N	0.001	217	0%	234	36.3%	2	50%	benign(0.026)	tolerated(0.47)	neutral(0.012)	NULL
RAB11FIP5	26056	genome.wustl.edu	37	2	73315308	73315308	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015470.2	-1	validated	p.R480	0.721	53	0%	37	13.5%	5	20%	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73786106	73786108	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015120.4	+1	reviewed	p.A3410in_frame_del	0.018:0.019:0.000	-	-	-	-	-	-	-	-	-	NULL
CTNNA2	1496	genome.wustl.edu	37	2	80085247	80085247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004389.3	+1	validated	p.R136H	1.000	78	1.3%	91	45.1%	1	100%	benign(0.399)	deleterious(0.04)	deleterious(0.477)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
TMEM182	130827	genome.wustl.edu	37	2	103379055	103379055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_144632.3	+1	validated	p.V48I	0.841	409	0%	549	43.5%	1	0%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
POTEF	728378	genome.wustl.edu	37	2	130832651	130832651	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001099771.2	-1	validated	p.P798	1.000	146	0%	132	36.4%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMPD4	55627	genome.wustl.edu	37	2	130910316	130910316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_017951.3	-1	validated	p.G805C	0.457	13	0%	17	47.1%	36	33.3%	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135891570	135891570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_012233.2	+1	reviewed	p.R489H	1.000	283	0%	356	41.9%	23	34.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
NR4A2	4929	genome.wustl.edu	37	2	157184490	157184490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006186.3	-1	reviewed	p.R344H	1.000	107	0%	93	43%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LRP2	4036	genome.wustl.edu	37	2	170022471	170022471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004525.2	-1	reviewed	p.G3910V	1.000	407	0%	601	38.6%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
PDK1	5163	genome.wustl.edu	37	2	173460687	173460687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002610.3	+1	reviewed	p.R434H	1.000	114	0.9%	138	40.6%	20	55%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
ENSG00000206965	0	genome.wustl.edu	37	2	175422722	175422722	+	RNA	SNP	G	G	A	rs138598191	by1000genomes	TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000384238	-1	known	NULL	0.025	14	7.1%	198	23.7%	4	0%	-	-	-	-
WIPF1	7456	genome.wustl.edu	37	2	175439949	175439949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001077269.1	-1	reviewed	p.T114M	1.000	147	0%	118	34.7%	26	3.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CHN1	1123	genome.wustl.edu	37	2	175742670	175742670	+	Silent	SNP	T	T	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001822.4	-1	reviewed	p.T149	0.998	470	0%	567	34%	9	33.3%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179416711	179416711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000356127	-1	known	p.G27736R	1.000	275	0.4%	396	39.9%	0	-	probably_damaging(1)	-	-	HMMPfam_fn3,HMMSmart_SM00060
SSFA2	6744	genome.wustl.edu	37	2	182784165	182784165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001130445.1	+1	validated	p.A1046T	0.003	84	1.2%	102	31.4%	75	37.3%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
SLC40A1	30061	genome.wustl.edu	37	2	190440013	190440014	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014585.5	-1	reviewed	p.F49fs	1.000:0.942	-	-	-	-	-	-	-	-	-	superfamily_MFS general substrate transporter
HIBCH	26275	genome.wustl.edu	37	2	191155190	191155190	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000392333	-1	known	p.Q8*	0.000	331	0%	305	34.1%	14	21.4%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
SF3B1	23451	genome.wustl.edu	37	2	198283299	198283299	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_012433.2	-1	reviewed	p.P143	0.996	345	0%	434	37.1%	64	28.1%	-	-	-	NULL
SGOL2	151246	genome.wustl.edu	37	2	201448171	201448171	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_152524.5	+1	validated	e8-1	0.996	467	0%	673	34.3%	3	66.6%	-	-	-	-
NOP58	51602	genome.wustl.edu	37	2	203167693	203167695	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015934.3	+1	provisional	p.K488in_frame_del	0.067:0.894:0.995	-	-	-	-	-	-	-	-	-	NULL
MDH1B	130752	genome.wustl.edu	37	2	207615787	207615787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001039845.1	-1	validated	p.V308A	1.000	337	0%	398	32.9%	5	60%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_LDH C-terminal domain-like
TMBIM1	64114	genome.wustl.edu	37	2	219141744	219141744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_022152.4	-1	validated	p.V240M	1.000	115	0%	173	12.7%	86	4.6%	benign(0.212)	deleterious(0.02)	neutral(0.404)	HMMPfam_UPF0005
GIGYF2	26058	genome.wustl.edu	37	2	233676027	233676029	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001103147.1	+1	reviewed	p.L681in_frame_del	0.774:0.953:0.944	-	-	-	-	-	-	-	-	-	NULL
INPP5D	3635	genome.wustl.edu	37	2	234079193	234079193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000359570	+1	known	p.L615M	1.000	131	0%	158	34.2%	7	0%	possibly_damaging(0.929)	tolerated(0.12)	deleterious(0.637)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
LMCD1	29995	genome.wustl.edu	37	3	8609223	8609223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014583.2	+1	reviewed	p.A346V	0.973	127	0.8%	108	30.6%	42	7.1%	possibly_damaging(0.81)	tolerated(1)	neutral(0.305)	HMMPfam_LIM,HMMSmart_LIM
CPNE9	151835	genome.wustl.edu	37	3	9746605	9746605	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_153635.2	+1	validated	p.L63	0.998	96	0%	77	53.2%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
HRH1	3269	genome.wustl.edu	37	3	11301510	11301510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000861.3	+1	reviewed	p.K263E	0.002	155	0%	186	28%	14	21.4%	benign(0.282)	tolerated(0.83)	neutral(0.087)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GRIP2	80852	genome.wustl.edu	37	3	14562036	14562036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001080423.1	-1	provisional	p.A338T	0.999	107	0%	103	35.9%	1	0%	-	-	-	NULL
TOP2B	7155	genome.wustl.edu	37	3	25668301	25668301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001068.2	-1	reviewed	p.E686K	1.000	368	0%	382	35.6%	41	39%	possibly_damaging(0.804)	tolerated(0.22)	neutral(0.344)	HMMSmart_TOP2c,superfamily_Topo_IIA_cen
TGFBR2	7048	genome.wustl.edu	37	3	30729913	30729913	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001024847.2	+1	reviewed	p.V503	1.000	190	0%	197	44.2%	44	15.9%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FBXL2	25827	genome.wustl.edu	37	3	33416852	33416852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_012157.3	+1	reviewed	p.C244R	1.000	189	0%	190	43.2%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
CLASP2	23122	genome.wustl.edu	37	3	33663732	33663732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015097.1	-1	validated	p.Q359L	1.000	143	0%	195	40.5%	4	0%	benign(0.02)	deleterious(0.04)	neutral(0.350)	superfamily_ARM repeat
CTNNB1	1499	genome.wustl.edu	37	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	byCluster	TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001098209.1	+1	reviewed	p.T41I	1.000	107	0%	158	39.9%	182	21.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47041733	47041733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015175.1	+1	validated	p.P1382S	0.999	68	0%	71	26.8%	11	36.3%	possibly_damaging(0.919)	deleterious(0.02)	deleterious(0.752)	NULL
RHOA	387	genome.wustl.edu	37	3	49397700	49397700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001664.2	-1	validated	p.T175M	1.000	687	0%	799	40.9%	629	25.2%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
HEMK1	51409	genome.wustl.edu	37	3	50609158	50609158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000424388	+1	known	p.G70S	0.038	142	0%	148	36.5%	18	16.6%	unknown(0)	-	-	NULL
WDR52	55779	genome.wustl.edu	37	3	113023926	113023926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000393845	-1	known	p.R759Q	0.936	136	0%	144	37.5%	6	16.6%	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	NULL
ILDR1	286676	genome.wustl.edu	37	3	121725956	121725956	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_175924.2	-1	provisional	p.L37	0.998	202	0%	273	19%	2	50%	-	-	-	HMMSmart_IG,superfamily_SSF48726
PARP15	165631	genome.wustl.edu	37	3	122336009	122336009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001113523.1	+1	validated	p.S333L	0.969	267	0%	311	33.1%	0	-	benign(0.018)	tolerated(0.1)	neutral(0.287)	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
MYLK	4638	genome.wustl.edu	37	3	123411622	123411622	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_053025.3	-1	reviewed	p.D1175	0.000	48	0%	72	43.1%	32	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KALRN	8997	genome.wustl.edu	37	3	124209622	124209622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001024660.3	+1	reviewed	p.R1491Q	1.000	180	0%	195	40.5%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ATP2C1	27032	genome.wustl.edu	37	3	130698114	130698114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001001486.1	+1	reviewed	p.P531H	1.000	195	0%	238	41.2%	62	41.9%	benign(0.004)	deleterious(0.03)	neutral(0.364)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ANKUB1	389161	genome.wustl.edu	37	3	149498108	149498108	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001144960.1	-1	predicted	p.P123	0.068	326	0%	369	43.9%	0	-	-	-	-	NULL
SLC7A14	57709	genome.wustl.edu	37	3	170204093	170204093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_020949.2	-1	validated	p.G275E	1.000	359	0%	481	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
ZMAT3	64393	genome.wustl.edu	37	3	178785418	178785418	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_022470.3	-1	reviewed	p.Q41	0.999	315	0%	331	38.1%	10	10%	-	-	-	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182897276	182897276	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015078.2	-1	validated	p.T1079	0.000	149	0%	104	38.5%	0	-	-	-	-	NULL
RTP1	132112	genome.wustl.edu	37	3	186917639	186917639	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_153708.2	+1	validated	p.C191	1.000	38	0%	20	40%	0	-	-	-	-	NULL
CCDC149	91050	genome.wustl.edu	37	4	24810258	24810258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001130726.1	-1	validated	p.R448M	0.995	272	0%	309	33%	5	40%	benign(0.075)	tolerated(0.08)	neutral(0.305)	NULL
PDS5A	23244	genome.wustl.edu	37	4	39929628	39929628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001100399.1	-1	reviewed	p.R99C	1.000	228	0%	276	35.1%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ALB	213	genome.wustl.edu	37	4	74279232	74279232	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000511370	+1	known	p.H158Y	0.476	265	0%	339	38.3%	0	-	-	-	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
BMP2K	55589	genome.wustl.edu	37	4	79792103	79792103	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000502613	+1	known	p.A159T	0.452	35	0%	27	22.2%	1	0%	-	-	-	NULL
BBS12	166379	genome.wustl.edu	37	4	123663115	123663115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_152618.2	+1	reviewed	p.A23V	0.980	260	0.4%	347	36.3%	1	0%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
FAT4	79633	genome.wustl.edu	37	4	126238898	126238898	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_024582.4	+1	validated	p.Y444	0.937	73	1.4%	68	33.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PHF17	79960	genome.wustl.edu	37	4	129793186	129793186	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_199320.2	+1	validated	p.H766	0.000	54	0%	53	41.5%	3	66.6%	-	-	-	NULL
OTUD4	54726	genome.wustl.edu	37	4	146059132	146059132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001102653.1	-1	reviewed	p.P867L	0.052	151	0%	205	34.1%	11	18.1%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
PALLD	23022	genome.wustl.edu	37	4	169589408	169589408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_016081.3	+1	reviewed	p.L326I	1.000	170	0%	242	37.2%	25	36%	probably_damaging(0.971)	deleterious(0.05)	deleterious(0.758)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TPPP	11076	genome.wustl.edu	37	5	666193	666193	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007030.2	-1	validated	p.A119	0.465	70	0%	61	27.9%	1	0%	-	-	-	HMMPfam_p25-alpha
C1QTNF3	114899	genome.wustl.edu	37	5	34033468	34033468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_181435.4	-1	validated	p.R171W	0.996	293	0%	268	30.6%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Collagen
NIPBL	25836	genome.wustl.edu	37	5	37064713	37064713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_133433.3	+1	reviewed	p.A2712T	1.000	150	0%	206	37.4%	31	25.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C5orf28	64417	genome.wustl.edu	37	5	43446552	43446552	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_022483.4	-1	validated	p.S140	0.497	142	0%	165	35.8%	12	25%	-	-	-	NULL
JMY	133746	genome.wustl.edu	37	5	78610592	78610592	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_152405.4	+1	validated	p.S859	0.953	23	0%	23	34.8%	2	50%	-	-	-	NULL
EDIL3	10085	genome.wustl.edu	37	5	83360600	83360600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005711.3	-1	reviewed	p.A291S	1.000	334	0%	432	32.4%	15	0%	benign(0.016)	tolerated(0.06)	neutral(0.323)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
PAM	5066	genome.wustl.edu	37	5	102285660	102285660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000919.3	+1	reviewed	p.R260Q	0.996	64	0%	85	31.8%	117	15.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_PHM_PNGase_F,HMMPfam_Cu2_monoox_C
TMEM173	340061	genome.wustl.edu	37	5	138860415	138860415	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_198282.2	-1	validated	p.A160	0.798	80	0%	89	40.4%	68	1.4%	-	-	-	NULL
ANKHD1	54882	genome.wustl.edu	37	5	139916951	139916951	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000253810	+1	known	p.S2352	1.000	81	0%	87	36.8%	16	0%	-	-	-	NULL
PCDHB17	54661	genome.wustl.edu	37	5	140536909	140536909	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NR_001280.1	+1	provisional	NULL	1.000	111	0%	124	42.7%	0	-	possibly_damaging(0.439)	tolerated(0.57)	neutral(0.149)	-
PCDHGB3	56102	genome.wustl.edu	37	5	140750431	140750431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_018924.2	+1	reviewed	p.A157V	0.404	192	0%	212	34.9%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ARSI	340075	genome.wustl.edu	37	5	149677542	149677542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001012301.2	-1	validated	p.K315N	0.995	15	0.000	9	0.556	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ADRA1B	147	genome.wustl.edu	37	5	159398962	159398962	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000679.3	+1	reviewed	p.C342*	1.000	21	0%	21	38.1%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PTTG1	9232	genome.wustl.edu	37	5	159854736	159854736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004219.2	+1	reviewed	p.D129N	1.000	138	0%	123	35.8%	78	32%	benign(0.008)	tolerated(0.06)	neutral(0.323)	HMMPfam_Securin
GABRB2	2561	genome.wustl.edu	37	5	160721171	160721171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_021911.2	-1	reviewed	p.A486T	1.000	330	0%	399	35.1%	0	-	benign(0.153)	tolerated(0.45)	neutral(0.026)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
RUFY1	80230	genome.wustl.edu	37	5	179036469	179036469	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_025158.3	+1	validated	p.C692	0.864	22	0%	21	38.1%	37	27%	-	-	-	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
E2F3	1871	genome.wustl.edu	37	6	20402602	20402613	+	Splice_Site	DEL	GCCGCCGCCGCT	GCCGCCGCCGCT	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	GCCGCCGCCGCT	GCCGCCGCCGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000378646	+1	known	e1-1	1.000:1.000:1.000:1.000:0.980:0.975:0.976:0.977:0.974:0.982:0.971:0.969	-	-	-	-	-	-	-	-	-	-
HIST1H2BD	3017	genome.wustl.edu	37	6	26158679	26158679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_021063.2	+1	reviewed	p.E94D	1.000	164	0%	136	33.1%	20	15%	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold
BAG6	7917	genome.wustl.edu	37	6	31612093	31612093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000404765	-1	known	p.A516T	1.000	17	0%	12	33.3%	50	28%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
ITPR3	3710	genome.wustl.edu	37	6	33630402	33630402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002224.2	+1	validated	p.R270H	1.000	42	0%	48	39.6%	6	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MIR,superfamily_MIR,HMMSmart_MIR
PPARD	5467	genome.wustl.edu	37	6	35392334	35392334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006238.4	+1	reviewed	p.V286M	1.000	96	0%	90	16.7%	14	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
C6orf132	647024	genome.wustl.edu	37	6	42074505	42074505	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000341865	-1	known	p.Q382P	0.002	36	0%	41	51.2%	1	0%	possibly_damaging(0.85)	deleterious(0.03)	deleterious(0.692)	NULL
SRF	6722	genome.wustl.edu	37	6	43144316	43144316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003131.2	+1	reviewed	p.Q358R	1.000	62	0%	72	33.3%	30	6.6%	benign(0.035)	tolerated(0.35)	neutral(0.022)	NULL
CUL9	23113	genome.wustl.edu	37	6	43152526	43152526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015089.2	+1	validated	p.G160S	0.944	47	0%	43	39.5%	6	50%	unknown(0)	deleterious(0)	-	superfamily_ARM repeat
CUL9	23113	genome.wustl.edu	37	6	43164464	43164464	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015089.2	+1	validated	p.T890fs	0.719	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
PGK2	5232	genome.wustl.edu	37	6	49754785	49754785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_138733.4	-1	reviewed	p.R39M	1.000	396	0%	476	41.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGK,superfamily_PGK
PHF3	23469	genome.wustl.edu	37	6	64395512	64395512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015153.2	+1	provisional	p.P630H	1.000	170	0%	217	11.1%	5	20%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
COL9A1	1297	genome.wustl.edu	37	6	70926689	70926689	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001851.4	-1	reviewed	p.G893*	0.990	61	0%	39	17.9%	0	-	-	-	-	HMMPfam_Collagen
IBTK	25998	genome.wustl.edu	37	6	82924475	82924475	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015525.2	-1	reviewed	p.D558A	1.000	159	0%	168	39.9%	3	0%	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	superfamily_POZ domain,HMMPfam_BTB
DOPEY1	23033	genome.wustl.edu	37	6	83863647	83863647	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015018.2	+1	validated	p.Q2092*	1.000	675	0%	719	40.6%	7	14.2%	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90428333	90428333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014611.1	-1	provisional	p.R2112Q	0.977	190	0%	211	33.2%	5	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
REV3L	5980	genome.wustl.edu	37	6	111628688	111628688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002912.3	-1	validated	p.P3043H	1.000	258	0%	339	38.6%	33	30.3%	possibly_damaging(0.563)	tolerated(0.11)	neutral(0.464)	NULL
HDAC2	3066	genome.wustl.edu	37	6	114292261	114292261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001527.3	-1	reviewed	p.T32A	0.312	13	0%	19	47.4%	71	26.7%	unknown(0)	tolerated(0.46)	-	NULL
THEMIS	387357	genome.wustl.edu	37	6	128135050	128135050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001010923.2	-1	reviewed	p.P246S	0.998	224	0%	223	41.3%	0	-	benign(0.006)	tolerated(1)	-	NULL
PTPRK	5796	genome.wustl.edu	37	6	128411093	128411093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001135648.1	-1	validated	p.A403T	1.000	306	0%	353	39.1%	22	9%	benign(0.043)	deleterious(0.03)	neutral(0.367)	HMMSmart_FN3,superfamily_FN_III-like
LAMA2	3908	genome.wustl.edu	37	6	129691112	129691113	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000426.3	+1	reviewed	p.M1647fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
MYB	4602	genome.wustl.edu	37	6	135518269	135518269	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001130173.1	+1	reviewed	p.E458	1.000	194	0%	193	40.9%	0	-	-	-	-	NULL
SHPRH	257218	genome.wustl.edu	37	6	146266636	146266636	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001042683.2	-1	validated	p.L487	1.000	413	0%	426	39.4%	2	0%	-	-	-	"HMMPfam_Linker_histone,HMMSmart_SM00526,HMMSmart_SM00487,superfamily_""Winged helix"" DNA-binding domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"
SYNE1	23345	genome.wustl.edu	37	6	152466677	152466677	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_033071.2	-1	reviewed	p.P8259	0.215	295	0%	419	37.5%	5	0%	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152688201	152688201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000454018	-1	known	p.T492I	0.000	34	0%	33	39.4%	2	50%	benign(0.035)	-	-	NULL
SUN1	23353	genome.wustl.edu	37	7	899941	899941	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000433212	+1	known	p.R416C	0.057	48	2.1%	52	15.4%	40	2.5%	-	-	-	NULL
HOXA7	3204	genome.wustl.edu	37	7	27195932	27195932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006896.3	-1	reviewed	p.G78D	1.000	30	0%	25	36%	0	-	benign(0.05)	tolerated(0.19)	neutral(0.053)	NULL
GLI3	2737	genome.wustl.edu	37	7	42007518	42007518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000168.5	-1	reviewed	p.S703P	1.000	188	0%	210	38.1%	4	25%	possibly_damaging(0.868)	tolerated(0.18)	neutral(0.393)	NULL
TNS3	64759	genome.wustl.edu	37	7	47474967	47474967	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_022748.10	-1	validated	p.P79	0.081	75	0%	82	45.1%	18	16.6%	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
LOC100289506	100289506	genome.wustl.edu	37	7	75959041	75959041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	XM_002342770.1	+1	model	p.G157S	0.987	211	0%	220	33.2%	149	27.5%	-	-	-	NULL
HGF	3082	genome.wustl.edu	37	7	81355324	81355324	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000601.4	-1	reviewed	p.R350	0.998	256	0%	317	38.5%	1	0%	-	-	-	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
ZAN	7455	genome.wustl.edu	37	7	100361739	100361739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003386.1	+1	reviewed	p.C1396Y	0.998	35	0%	36	33.3%	0	-	probably_damaging(0.997)	-	-	HMMPfam_C8
DOCK4	9732	genome.wustl.edu	37	7	111372286	111372286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014705.3	-1	reviewed	p.L1817S	0.995	142	0%	185	37.3%	10	0%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113559032	113559032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002711.3	-1	reviewed	p.P7H	0.952	46	0%	55	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CADPS2	93664	genome.wustl.edu	37	7	122028746	122028746	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000397721	-1	known	p.T621I	1.000	238	0%	262	34.7%	26	7.6%	-	-	-	NULL
GCC1	79571	genome.wustl.edu	37	7	127222495	127222495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_024523.5	-1	reviewed	p.S634L	0.068	124	0%	121	37.2%	13	23%	benign(0.014)	tolerated(0.19)	neutral(0.050)	NULL
FLNC	2318	genome.wustl.edu	37	7	128492798	128492798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001458.4	+1	reviewed	p.R1999Q	1.000	47	0%	38	44.7%	9	0%	benign(0.018)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
CDK5	1020	genome.wustl.edu	37	7	150753877	150753877	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004935.3	-1	validated	p.H67	1.000	75	0%	87	34.5%	31	35.4%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
UBE3C	9690	genome.wustl.edu	37	7	156975019	156975019	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014671.2	+1	validated	p.L330	0.498	188	0%	236	21.2%	17	5.8%	-	-	-	NULL
MTUS1	57509	genome.wustl.edu	37	8	17512152	17512152	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001001924.2	-1	reviewed	p.H1044	0.984	249	0%	323	34.7%	7	14.2%	-	-	-	NULL
SORBS3	10174	genome.wustl.edu	37	8	22428455	22428455	+	Silent	SNP	C	C	T	rs191905902	by1000genomes	TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005775.4	+1	validated	p.N488	0.363	60	0%	42	31%	99	11.1%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
CHRNA6	8973	genome.wustl.edu	37	8	42611890	42611890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004198.2	-1	provisional	p.P151L	1.000	305	0%	336	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
VCPIP1	80124	genome.wustl.edu	37	8	67576551	67576551	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_025054.4	-1	validated	p.S881	0.964	230	0%	247	39.7%	2	50%	-	-	-	NULL
STK3	6788	genome.wustl.edu	37	8	99591972	99591972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006281.2	-1	validated	p.L290M	1.000	613	0%	745	37.3%	16	37.5%	probably_damaging(0.996)	tolerated(0.69)	neutral(0.464)	superfamily_Protein kinase-like (PK-like)
WDR67	93594	genome.wustl.edu	37	8	124140595	124140595	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_145647.3	+1	validated	p.T653	0.013	246	0%	316	39.6%	4	0%	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
KIAA0196	9897	genome.wustl.edu	37	8	126087249	126087249	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014846.3	-1	reviewed	p.V323	1.000	378	0%	504	38.7%	10	10%	-	-	-	HMMPfam_Strumpellin
EIF2C2	27161	genome.wustl.edu	37	8	141559317	141559317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000220592	-1	known	p.A495V	1.000	75	0%	67	35.8%	9	11.1%	benign(0.02)	deleterious(0.01)	neutral(0.407)	NULL
EPPK1	83481	genome.wustl.edu	37	8	144942392	144942392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_031308.1	-1	validated	p.G1677D	0.999	123	0%	109	35.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00250,superfamily_Plakin repeat
RANBP6	26953	genome.wustl.edu	37	9	6012624	6012625	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_012416.2	-1	validated	p.V995fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CCL21	6366	genome.wustl.edu	37	9	34709787	34709787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002989.2	-1	reviewed	p.I59V	0.987	80	0%	68	36.8%	36	0%	benign(0.007)	tolerated(0.29)	neutral(0.029)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines
NPR2	4882	genome.wustl.edu	37	9	35802224	35802224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003995.3	+1	reviewed	p.H552Y	1.000	396	0%	581	12.7%	9	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ALDH1A1	216	genome.wustl.edu	37	9	75516131	75516133	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000689.3	-1	reviewed	p.K499in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ALDH-like
TLE4	7091	genome.wustl.edu	37	9	82323671	82323671	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000496114	+1	known	p.C202R	0.007	61	1.6%	36	27.8%	7	0%	-	-	-	NULL
SLC28A3	64078	genome.wustl.edu	37	9	86914629	86914631	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_022127.1	-1	provisional	p.WS178in_frame_delC	0.504:0.877:0.995	-	-	-	-	-	-	-	-	-	NULL
WNK2	65268	genome.wustl.edu	37	9	96015197	96015197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006648.3	+1	reviewed	p.T623A	1.000	31	0%	22	27.3%	3	0%	unknown(0)	tolerated(0.19)	-	superfamily_Kinase_like
TRIM32	22954	genome.wustl.edu	37	9	119460227	119460227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001099679.1	+1	reviewed	p.R69H	1.000	134	0%	124	33.1%	4	25%	possibly_damaging(0.54)	deleterious(0.01)	deleterious(0.589)	superfamily_SSF57850
TTLL11	158135	genome.wustl.edu	37	9	124585093	124585093	+	Missense_Mutation	SNP	G	G	A	rs182523001	by1000genomes	TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001139442.1	-1	validated	p.P726S	0.269	37	0%	58	41.4%	1	100%	possibly_damaging(0.452)	tolerated(0.09)	neutral(0.445)	NULL
ZBTB43	23099	genome.wustl.edu	37	9	129595572	129595572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001135776.1	+1	validated	p.A262T	0.014	54	0%	66	36.4%	1	0%	benign(0.007)	tolerated(0.06)	neutral(0.323)	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131346739	131346739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001130438.1	+1	validated	p.R791L	1.000	103	0%	103	33%	28	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
C9orf114	51490	genome.wustl.edu	37	9	131588379	131588379	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_016390.2	-1	validated	p.S187	0.001	125	0%	120	37.5%	17	29.4%	-	-	-	HMMPfam_DUF171,superfamily_Nucleic_acid_OB,superfamily_SSF75217
ENSG00000249728	0	genome.wustl.edu	37	9	133346366	133346366	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000503205	-1	novel	NULL	0.000	120	0%	97	34%	0	-	-	-	-	-
SEC16A	9919	genome.wustl.edu	37	9	139371310	139371310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014866.1	-1	validated	p.P253L	0.001	67	0%	61	59%	12	41.6%	unknown(0)	deleterious(0)	-	NULL
TUBB4B	10383	genome.wustl.edu	37	9	140136440	140136440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006088.5	+1	validated	p.G82W	1.000	79	0%	41	24.4%	196	25%	probably_damaging(1)	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
PNPLA7	375775	genome.wustl.edu	37	9	140361772	140361772	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001098537.1	-1	validated	p.A1012	0.438	70	0%	71	36.6%	1	0%	-	-	-	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
GAD2	2572	genome.wustl.edu	37	10	26507977	26507977	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000818.2	+1	reviewed	p.L98	1.000	213	0%	241	40.2%	0	-	-	-	-	NULL
ARMC4	55130	genome.wustl.edu	37	10	28274003	28274003	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_018076.2	-1	validated	p.L174	0.806	249	0%	361	41%	0	-	-	-	-	NULL
HNRNPF	3185	genome.wustl.edu	37	10	43882717	43882717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001098204.1	-1	reviewed	p.R206W	0.997	101	0%	72	40.3%	235	35.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RGR	5995	genome.wustl.edu	37	10	86008737	86008737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002921.3	+1	reviewed	p.A103V	0.308	30	0%	32	53.1%	0	-	benign(0.01)	tolerated(0.17)	neutral(0.059)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PAPSS2	9060	genome.wustl.edu	37	10	89472995	89472995	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001015880.1	+1	reviewed	p.I103	0.987	150	0%	182	38.5%	5	0%	-	-	-	HMMPfam_APS_kinase,superfamily_SSF52540
PKD2L1	9033	genome.wustl.edu	37	10	102052703	102052703	+	Splice_Site	SNP	A	A	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_016112.2	-1	reviewed	e11+2	1.000	239	0%	281	28.8%	0	-	-	-	-	-
MMP21	118856	genome.wustl.edu	37	10	127460875	127460875	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_147191.1	-1	reviewed	p.T297	0.000	177	0%	262	32.1%	1	100%	-	-	-	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
SYCE1	93426	genome.wustl.edu	37	10	135369361	135369361	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001143764.1	-1	validated	p.C214	0.250	81	0%	77	33.8%	0	-	-	-	-	NULL
PNPLA2	57104	genome.wustl.edu	37	11	822494	822494	+	Missense_Mutation	SNP	C	C	T	rs121918259		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_020376.2	+1	provisional	p.P195L	1.000	142	0%	184	39.1%	76	30.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MUC2	4583	genome.wustl.edu	37	11	1092570	1092570	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002457.2	+1	reviewed	p.T1463	0.375	1263	0.2%	1471	20.1%	0	-	-	-	-	NULL
NAP1L4	4676	genome.wustl.edu	37	11	2981001	2981001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005969.3	-1	reviewed	p.G249W	1.000	392	0.3%	485	38.4%	86	22%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAP
C11orf16	56673	genome.wustl.edu	37	11	8948674	8948674	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_020643.2	-1	validated	p.V124	0.000	77	0%	62	40.3%	0	-	-	-	-	NULL
PTH	5741	genome.wustl.edu	37	11	13514356	13514356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000315.2	-1	reviewed	p.A16V	0.999	298	0%	361	39.9%	0	-	benign(0.298)	deleterious(0.01)	deleterious(0.498)	HMMPfam_Parathyroid
NAV2	89797	genome.wustl.edu	37	11	19970408	19970408	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_182964.5	+1	validated	p.N809	0.995	51	0%	60	33.3%	5	60%	-	-	-	NULL
SLC17A6	57084	genome.wustl.edu	37	11	22363168	22363168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_020346.2	+1	validated	p.D61N	1.000	25	0%	24	25%	0	-	benign(0.075)	tolerated(0.19)	neutral(0.054)	superfamily_MFS_gen_substrate_transporter
MPPED2	744	genome.wustl.edu	37	11	30601859	30601859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001584.2	-1	reviewed	p.N21T	1.000	429	0%	503	44.5%	17	29.4%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
HIPK3	10114	genome.wustl.edu	37	11	33308665	33308665	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005734.3	+1	validated	p.A235	0.863	174	0%	177	14.7%	5	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AMBRA1	55626	genome.wustl.edu	37	11	46529855	46529855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_017749.2	-1	validated	p.R652H	1.000	131	0%	193	31.6%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR5T3	390154	genome.wustl.edu	37	11	56020471	56020471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001004747.1	+1	provisional	p.K266E	0.997	353	0%	435	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR9I1	219954	genome.wustl.edu	37	11	57886350	57886350	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001005211.1	-1	validated	p.C189	0.997	148	0%	239	30.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5A2	219981	genome.wustl.edu	37	11	59190377	59190377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001001954.1	-1	provisional	p.G17V	0.986	91	0%	143	37.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
TMEM216	51259	genome.wustl.edu	37	11	61165375	61165375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_016499.4	+1	validated	p.M59T	1.000	366	0%	381	35.4%	31	38.7%	benign(0.134)	deleterious(0)	neutral(0.456)	HMMPfam_Transmemb_17
SPTBN2	6712	genome.wustl.edu	37	11	66453435	66453435	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006946.2	-1	reviewed	p.P2360	0.056	37	0%	28	35.7%	32	59.3%	-	-	-	NULL
AIP	9049	genome.wustl.edu	37	11	67254537	67254537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003977.2	+1	reviewed	p.R54W	0.725	73	0%	113	37.2%	59	22%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FKBP_C,superfamily_SSF54534
UNC93B1	81622	genome.wustl.edu	37	11	67765851	67765851	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000227471	-1	known	p.T253	0.594	104	0%	152	28.9%	35	22.8%	-	-	-	NULL
STARD10	10809	genome.wustl.edu	37	11	72492049	72492049	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006645.2	-1	validated	p.E60*	1.000	141	0%	161	44.1%	43	6.9%	-	-	-	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
ODZ4	26011	genome.wustl.edu	37	11	78380911	78380911	+	Missense_Mutation	SNP	C	C	T	rs144957611	by1000genomes	TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001098816.2	-1	validated	p.R2160H	1.000	139	0%	178	36.5%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
LOC653111	653111	genome.wustl.edu	37	11	89768543	89768543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	XM_926073.2	+1	model	p.C55Y	0.306	401	0%	478	33.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00184,superfamily_RING/U-box
FAT3	120114	genome.wustl.edu	37	11	92616097	92616097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001008781.2	+1	validated	p.A4159T	1.000	185	0.5%	129	43.4%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
FUT4	2526	genome.wustl.edu	37	11	94278534	94278534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002033.3	+1	reviewed	p.A412V	1.000	37	2.7%	47	31.9%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glyco_transf_10
ALKBH8	91801	genome.wustl.edu	37	11	107422591	107422591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_138775.2	-1	validated	p.G215C	0.998	300	0%	408	36.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ATM	472	genome.wustl.edu	37	11	108205764	108205766	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000051.3	+1	reviewed	p.G2695in_frame_del	0.997:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat
CRYAB	1410	genome.wustl.edu	37	11	111781056	111781056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001885.1	-1	reviewed	p.R107C	1.000	200	0%	232	19.8%	73	5.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP20,superfamily_HSP20-like chaperones
CRTAM	56253	genome.wustl.edu	37	11	122726508	122726508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_019604.2	+1	validated	p.R199Q	0.048	257	0%	292	35.6%	0	-	benign(0.149)	tolerated(0.26)	neutral(0.047)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
KCNA5	3741	genome.wustl.edu	37	12	5154218	5154218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002234.2	+1	reviewed	p.G302E	0.003	56	0%	27	51.9%	1	0%	benign(0)	tolerated(0.15)	neutral(0.241)	superfamily_Voltage-gated potassium channels
CD163	9332	genome.wustl.edu	37	12	7640677	7640677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004244.4	-1	validated	p.R476M	1.000	117	0%	99	47.5%	3	0%	probably_damaging(0.984)	tolerated(0.16)	deleterious(0.490)	superfamily_SRCR-like
ETV6	2120	genome.wustl.edu	37	12	12006464	12006464	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001987.4	+1	reviewed	p.P144	0.104	364	0%	503	31.8%	14	14.2%	-	-	-	NULL
DUSP16	80824	genome.wustl.edu	37	12	12674020	12674020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_030640.2	-1	reviewed	p.M5V	1.000	380	0%	453	34%	14	28.5%	unknown(0)	-	-	NULL
LDHB	3945	genome.wustl.edu	37	12	21790088	21790088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002300.6	-1	reviewed	p.A252T	1.000	250	0%	223	35.4%	871	40%	possibly_damaging(0.559)	deleterious(0)	deleterious(0.635)	HMMPfam_Ldh_1_C,superfamily_LDH C-terminal domain-like
ETNK1	55500	genome.wustl.edu	37	12	22796738	22796738	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_018638.4	+1	reviewed	p.Y155	0.124	183	0%	172	38.4%	13	53.8%	-	-	-	superfamily_Kinase_like
ENSG00000223722	0	genome.wustl.edu	37	12	31907747	31907747	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000453713	+1	known	p.L32	0.028	125	0%	108	43.5%	1	0%	-	-	-	NULL
CNTN1	1272	genome.wustl.edu	37	12	41419028	41419028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001843.2	+1	reviewed	p.R867K	1.000	115	0%	127	37%	9	0%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SENP1	29843	genome.wustl.edu	37	12	48468123	48468123	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014554.2	-1	validated	p.S308	1.000	254	0%	360	37.8%	11	36.3%	-	-	-	NULL
KCNH3	23416	genome.wustl.edu	37	12	49943259	49943259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_012284.1	+1	validated	p.A502T	1.000	53	0%	35	28.6%	22	40.9%	probably_damaging(0.997)	tolerated(0.22)	deleterious(0.508)	superfamily_SSF81324
KRT80	144501	genome.wustl.edu	37	12	52585571	52585571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_182507.2	-1	reviewed	p.P39L	0.000	26	0%	13	76.9%	4	50%	probably_damaging(0.958)	tolerated(0.69)	neutral(0.404)	NULL
TENC1	23371	genome.wustl.edu	37	12	53453102	53453102	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015319.2	+1	reviewed	p.R569	0.018	22	0.000	9	0.556	11	0%	-	-	-	NULL
ITGA5	3678	genome.wustl.edu	37	12	54797076	54797076	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002205.2	-1	reviewed	p.P603	0.007	345	0%	378	40.2%	83	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_SSF69179
PHC1P1	653441	genome.wustl.edu	37	12	55806640	55806640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000379664	-1	known	p.C564R	0.199	201	0%	251	37.8%	11	0%	-	-	-	NULL
SLC39A5	283375	genome.wustl.edu	37	12	56625331	56625331	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001135195.1	+1	validated	p.D91	0.967	89	0%	74	37.8%	0	-	-	-	-	NULL
SLC16A7	9194	genome.wustl.edu	37	12	60098706	60098706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004731.3	+1	provisional	p.V42I	1.000	199	0%	297	32%	0	-	benign(0.253)	tolerated(0.39)	neutral(0.042)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
PTPRB	5787	genome.wustl.edu	37	12	71031124	71031124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001109754.1	-1	reviewed	p.S18A	0.993	240	0%	273	31.5%	2	0%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	superfamily_Ricin B-like lectins
ZFC3H1	196441	genome.wustl.edu	37	12	72026210	72026210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_144982.4	-1	validated	p.R968W	1.000	113	0%	114	36.8%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MYF6	4618	genome.wustl.edu	37	12	81101799	81101799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002469.2	+1	reviewed	p.R101C	1.000	63	0%	51	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
C12orf29	91298	genome.wustl.edu	37	12	88433990	88433990	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001009894.2	+1	validated	p.A52	0.998	236	0%	321	38.9%	11	45.4%	-	-	-	NULL
SPIC	121599	genome.wustl.edu	37	12	101880174	101880174	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_152323.1	+1	provisional	p.P124	0.042	181	0%	207	38.2%	0	-	-	-	-	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
CKAP4	10970	genome.wustl.edu	37	12	106633935	106633935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006825.3	-1	validated	p.R226W	1.000	165	0%	146	42.5%	97	26.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C12orf34	84915	genome.wustl.edu	37	12	110182028	110182028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_032829.2	+1	validated	p.R26H	1.000	17	0%	10	50%	7	14.2%	possibly_damaging(0.897)	deleterious(0.02)	deleterious(0.737)	NULL
ATXN2	6311	genome.wustl.edu	37	12	111907943	111907943	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002973.3	-1	reviewed	p.Y1095	1.000	178	0%	247	36.4%	25	36%	-	-	-	NULL
DDX54	79039	genome.wustl.edu	37	12	113596744	113596744	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001111322.1	-1	reviewed	p.Q863*	0.990	18	0%	21	28.6%	44	43.1%	-	-	-	NULL
TESC	54997	genome.wustl.edu	37	12	117484422	117484422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_017899.3	-1	validated	p.A207V	0.294	43	0%	29	27.6%	24	12.5%	benign(0.113)	deleterious(0)	neutral(0.454)	superfamily_EF-hand
RNF10	9921	genome.wustl.edu	37	12	121001391	121001391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014868.4	+1	reviewed	p.R499H	0.204	135	0.7%	134	35.1%	120	32.5%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
HNF1A	6927	genome.wustl.edu	37	12	121432115	121432115	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000545.5	+1	reviewed	p.P291fs	0.964	-	-	-	-	-	-	-	-	-	HMMPfam_HNF-1B_C
HCAR2	338442	genome.wustl.edu	37	12	123187646	123187646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_177551.3	-1	validated	p.S62N	1.000	143	0%	175	38.3%	1	0%	benign(0.044)	tolerated(0.57)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
PIWIL1	9271	genome.wustl.edu	37	12	130834471	130834471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004764.3	+1	reviewed	p.A335T	1.000	200	0%	246	38.6%	0	-	benign(0.092)	tolerated(0.24)	neutral(0.044)	HMMPfam_PAZ,superfamily_PAZ domain
RIMBP2	23504	genome.wustl.edu	37	12	130926735	130926735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015347.4	-1	validated	p.V371I	0.996	250	0.4%	243	28.4%	0	-	benign(0.004)	tolerated(0.23)	neutral(0.042)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PSPC1	55269	genome.wustl.edu	37	13	20277470	20277470	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001042414.1	-1	validated	p.S473A	1.000	215	0%	278	20.5%	18	38.8%	benign(0.039)	tolerated(0.26)	neutral(0.036)	NULL
USPL1	10208	genome.wustl.edu	37	13	31195355	31195355	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005800.4	+1	validated	p.H26	1.000	374	0%	418	33.5%	1	100%	-	-	-	NULL
ZAR1L	646799	genome.wustl.edu	37	13	32885607	32885607	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001136571.1	-1	reviewed	p.A152	0.000	19	0.000	7	0.714	0	-	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	35806714	35806714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015678.4	+1	validated	p.R1912C	1.000	342	0%	375	31.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
POU4F1	5457	genome.wustl.edu	37	13	79176526	79176526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006237.3	-1	validated	p.T95M	1.000	14	0%	10	60%	0	-	unknown(0)	deleterious(0.02)	-	NULL
MYO16	23026	genome.wustl.edu	37	13	109793504	109793504	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015011.1	+1	validated	p.A1626	0.000	57	0%	41	41.5%	0	-	-	-	-	NULL
LOC100289447	100289447	genome.wustl.edu	37	13	113803630	113803630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	XM_002344234.1	-1	model	p.R56W	0.960	33	0%	41	46.3%	1	0%	-	-	-	NULL
OR4K2	390431	genome.wustl.edu	37	14	20344843	20344843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001005501.1	+1	provisional	p.Q139H	0.000	437	0.2%	566	36.6%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF40	55701	genome.wustl.edu	37	14	21542635	21542635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_018071.3	+1	validated	p.T249M	0.985	62	0%	71	23.9%	14	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SALL2	6297	genome.wustl.edu	37	14	21993142	21993142	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005407.1	-1	validated	p.P240	0.007	86	0%	96	38.5%	12	8.3%	-	-	-	NULL
CEBPE	1053	genome.wustl.edu	37	14	23587814	23587814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001805.2	-1	reviewed	p.G163S	0.987	11	0%	14	28.6%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
LOC728667	728667	genome.wustl.edu	37	14	24296568	24296568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	XM_001128080.3	-1	model	p.I13T	0.001	10	0%	11	54.5%	0	-	-	-	-	NULL
CIDEB	27141	genome.wustl.edu	37	14	24774960	24774960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014430.2	-1	validated	p.R180H	0.975	107	0.9%	104	33.7%	18	16.6%	benign(0.043)	deleterious(0)	neutral(0.447)	NULL
NPAS3	64067	genome.wustl.edu	37	14	34204508	34204508	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_173159.2	+1	reviewed	p.R261	0.011	243	0%	332	40.7%	4	75%	-	-	-	NULL
LOC100287214	100287214	genome.wustl.edu	37	14	65008083	65008083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	XM_002343281.1	-1	model	p.A371T	0.895	41	0%	33	33.3%	33	6%	-	-	-	HMMPfam_NAD-GH
GSTZ1	2954	genome.wustl.edu	37	14	77794294	77794294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_145870.2	+1	reviewed	p.P86S	0.941	89	0%	83	39.8%	10	30%	benign(0.028)	tolerated(0.07)	neutral(0.321)	superfamily_Thioredoxin-like
DICER1	23405	genome.wustl.edu	37	14	95569702	95569702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_030621.3	-1	reviewed	p.S1344L	1.000	88	0%	112	41.1%	11	45.4%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
RTL1	388015	genome.wustl.edu	37	14	101349909	101349909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001134888.2	-1	reviewed	p.R406H	0.020	58	0%	46	41.3%	70	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Acid proteases
MIR1247	100302145	genome.wustl.edu	37	14	102026702	102026702	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000408206	-1	known	NULL	1.000	21	0%	12	66.7%	2	0%	-	-	-	-
PPP1R13B	23368	genome.wustl.edu	37	14	104206407	104206407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000380023	-1	known	p.R627C	0.000	132	0%	203	45.3%	16	25%	unknown(0)	deleterious(0)	-	NULL
PPP1R13B	23368	genome.wustl.edu	37	14	104212711	104212711	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015316.2	-1	reviewed	p.S383	0.985	70	0%	70	34.3%	10	10%	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105407055	105407055	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_138420.2	-1	validated	p.L4911	0.000	73	0%	107	16.8%	3	0%	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28431880	28431880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004667.4	-1	reviewed	p.I2890fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Galactose-binding domain-like
CHRFAM7A	89832	genome.wustl.edu	37	15	30663322	30663322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_139320.1	-1	reviewed	p.S197P	1.000	756	0%	1120	22.1%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
RYR3	6263	genome.wustl.edu	37	15	33795931	33795931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001036.3	+1	validated	p.G91S	0.997	186	0%	206	37.4%	0	-	benign(0)	-	-	HMMPfam_Ins145_P3_rec
RPUSD2	27079	genome.wustl.edu	37	15	40866195	40866195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_152260.1	+1	provisional	p.A458V	0.030	87	0%	61	39.3%	15	40%	benign(0.036)	tolerated(0.25)	neutral(0.039)	superfamily_PsdUridine_synth_cat_dom
DUOX2	50506	genome.wustl.edu	37	15	45397963	45397963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014080.4	-1	reviewed	p.V738M	0.000	104	0%	109	45%	1	100%	benign(0.409)	tolerated(0.11)	neutral(0.404)	NULL
ZWILCH	55055	genome.wustl.edu	37	15	66801172	66801172	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NR_003105.1	+1	validated	NULL	0.317	324	0%	477	19.3%	0	-	-	-	-	-
PKM2	5315	genome.wustl.edu	37	15	72499084	72499085	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002654.3	-1	reviewed	p.V375fs	0.072:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_PK,superfamily_PK C-terminal domain-like,superfamily_Phosphoenolpyruvate/pyruvate domain
MAN2C1	4123	genome.wustl.edu	37	15	75650841	75650841	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006715.2	-1	validated	p.L789	1.000	32	0%	22	31.8%	42	28.5%	-	-	-	HMMPfam_Glyco_hydro_38C
UBE2Q2	92912	genome.wustl.edu	37	15	76161328	76161330	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_173469.2	+1	validated	p.E145in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
AKAP13	11214	genome.wustl.edu	37	15	86125132	86125132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_006738.4	+1	reviewed	p.M1278T	0.000	81	0%	93	34.4%	2	0%	benign(0.006)	tolerated(0.27)	neutral(0.034)	NULL
SYNM	23336	genome.wustl.edu	37	15	99670283	99670284	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000336292	+1	known	p.E575fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
MEF2A	4205	genome.wustl.edu	37	15	100211863	100211863	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005587.2	+1	reviewed	e3+1	1.000	131	0%	137	25.5%	2	0%	-	-	-	-
WFIKKN1	117166	genome.wustl.edu	37	16	683716	683716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_053284.2	+1	reviewed	p.A436T	1.000	20	0%	15	40%	0	-	possibly_damaging(0.647)	tolerated(0.14)	deleterious(0.477)	superfamily_TIMP_like
CRAMP1L	57585	genome.wustl.edu	37	16	1703129	1703129	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_020825.3	+1	validated	p.Q337*	1.000	68	0%	68	44.1%	7	14.2%	-	-	-	NULL
IGFALS	3483	genome.wustl.edu	37	16	1841980	1841980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004970.2	-1	reviewed	p.A147T	0.649	13	0%	15	33.3%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_LRR_1,superfamily_SSF52058
MSRB1	51734	genome.wustl.edu	37	16	1989129	1989129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_016332.2	-1	reviewed	p.A112V	0.425	176	0%	207	41.1%	20	20%	benign(0)	tolerated(0.05)	neutral(0.345)	superfamily_Mss4-like
PKD1	5310	genome.wustl.edu	37	16	2140405	2140405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001009944.2	-1	reviewed	p.R4109C	0.989	22	0%	16	31.2%	13	15.3%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_PKD_channel
E4F1	1877	genome.wustl.edu	37	16	2282891	2282892	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004424.3	+1	reviewed	p.K289fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
VPS35	55737	genome.wustl.edu	37	16	46706254	46706254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_018206.4	-1	reviewed	p.E431K	1.000	186	0%	247	35.6%	55	23.6%	benign(0.042)	tolerated(0.76)	neutral(0.004)	HMMPfam_Vps35
CNEP1R1	255919	genome.wustl.edu	37	16	50068024	50068024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_153261.4	+1	provisional	p.R115Q	1.000	364	0%	568	33.1%	14	7.1%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_Tmemb_18A
GINS3	64785	genome.wustl.edu	37	16	58437109	58437109	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001126129.1	+1	reviewed	p.T137	0.000	92	0%	108	31.5%	7	0%	-	-	-	HMMPfam_Psf3
C16orf86	388284	genome.wustl.edu	37	16	67701560	67701560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000291011	+1	known	p.P53S	0.000	58	0%	87	33.3%	0	-	-	-	-	NULL
NFATC3	4775	genome.wustl.edu	37	16	68225386	68225386	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_173165.1	+1	reviewed	p.P938	0.999	211	0%	257	38.1%	49	22.4%	-	-	-	NULL
PHLPP2	23035	genome.wustl.edu	37	16	71692625	71692625	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015020.2	-1	validated	p.L693	1.000	608	0%	763	18.2%	2	0%	-	-	-	HMMSmart_SM00364,superfamily_L domain-like
WDR59	79726	genome.wustl.edu	37	16	74937909	74937909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_030581.3	-1	validated	p.S601N	1.000	151	0%	124	31.5%	15	46.6%	benign(0.103)	tolerated(0.27)	neutral(0.042)	NULL
TRPV1	7442	genome.wustl.edu	37	17	3494438	3494438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000399752	-1	known	p.C140G	0.000	137	0%	126	34.9%	0	-	benign(0.014)	-	-	NULL
SPNS2	124976	genome.wustl.edu	37	17	4439685	4439687	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001124758.1	+1	provisional	p.F526in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NEURL4	84461	genome.wustl.edu	37	17	7232441	7232441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_032442.2	-1	validated	p.Q64R	1.000	14	0%	10	40%	4	25%	unknown(0)	tolerated(0.67)	-	HMMPfam_Neuralized,HMMSmart_SM00588
ALOX12B	242	genome.wustl.edu	37	17	7976472	7976472	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001139.2	-1	reviewed	p.D640	0.426	110	0%	92	47.8%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
FLCN	201163	genome.wustl.edu	37	17	17124885	17124885	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_144997.5	-1	reviewed	p.T279	0.002	40	0%	41	39%	16	12.5%	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18024994	18024994	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_016239.3	+1	reviewed	p.P960	0.000	14	0%	13	30.8%	0	-	-	-	-	NULL
LLGL1	3996	genome.wustl.edu	37	17	18146112	18146112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004140.3	+1	reviewed	p.A1058T	0.072	53	0%	55	12.7%	25	0%	benign(0.03)	tolerated(0.08)	neutral(0.301)	NULL
FBXW10	10517	genome.wustl.edu	37	17	18651252	18651252	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_031456.3	+1	validated	e2-2	0.038	413	0%	487	32.6%	0	-	-	-	-	-
FBXW10	10517	genome.wustl.edu	37	17	18668134	18668134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_031456.3	+1	validated	p.K505E	0.988	663	0%	819	9.8%	0	-	benign(0.227)	tolerated(0.46)	neutral(0.035)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
LIG3	3980	genome.wustl.edu	37	17	33319549	33319549	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_013975.2	+1	reviewed	p.D431	1.000	171	0%	202	34.7%	20	30%	-	-	-	HMMPfam_DNA_ligase_A_N
TAF15	8148	genome.wustl.edu	37	17	34147241	34147242	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_139215.1	+1	reviewed	p.Q60fs	0.730:0.805	-	-	-	-	-	-	-	-	-	NULL
DUSP14	11072	genome.wustl.edu	37	17	35872828	35872828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007026.2	+1	validated	p.V152I	1.000	52	0%	81	33.3%	48	29.1%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
CACNB1	782	genome.wustl.edu	37	17	37331662	37331662	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000723.3	-1	reviewed	p.S527	0.797	85	0%	57	31.6%	4	25%	-	-	-	NULL
SMARCE1	6605	genome.wustl.edu	37	17	38787038	38787038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003079.4	-1	reviewed	p.V319I	0.000	362	0.3%	409	36.7%	240	32.5%	benign(0.176)	tolerated(0.52)	neutral(0.025)	NULL
KRT25	147183	genome.wustl.edu	37	17	38907470	38907470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_181534.3	-1	reviewed	p.E260K	1.000	199	0%	211	36%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
SPATA20	64847	genome.wustl.edu	37	17	48632646	48632646	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_022827.2	+1	provisional	p.C737	0.990	244	0%	259	39%	43	27.9%	-	-	-	NULL
KCNH6	81033	genome.wustl.edu	37	17	61613096	61613096	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_030779.2	+1	reviewed	p.L390	1.000	48	0%	46	32.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
APOH	350	genome.wustl.edu	37	17	64224207	64224207	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000042.2	-1	reviewed	p.R58*	0.086	374	0%	423	34.3%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
DNAI2	64446	genome.wustl.edu	37	17	72308222	72308222	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_023036.4	+1	reviewed	p.A525	0.008	77	0%	65	40%	0	-	-	-	-	superfamily_WD40 repeat-like
LGALS3BP	3959	genome.wustl.edu	37	17	76970878	76970878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005567.3	-1	reviewed	p.E90K	0.519	51	0%	35	34.3%	343	27.9%	possibly_damaging(0.888)	deleterious(0.02)	deleterious(0.730)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
MC4R	4160	genome.wustl.edu	37	18	58038903	58038903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005912.2	-1	reviewed	p.A227V	1.000	66	0%	88	36.4%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MBP	4155	genome.wustl.edu	37	18	74696766	74696766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001025101.1	-1	reviewed	p.D279N	0.000	164	0%	171	35.7%	0	-	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	HMMPfam_Myelin_MBP
CSNK1G2	1455	genome.wustl.edu	37	19	1979769	1979769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001319.6	+1	validated	p.V341I	0.987	66	0%	54	35.2%	71	15.4%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
THOP1	7064	genome.wustl.edu	37	19	2810761	2810761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003249.3	+1	provisional	p.T589M	0.978	14	0%	10	40%	52	23%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Peptidase_M3,superfamily_SSF55486
TRIP10	9322	genome.wustl.edu	37	19	6750397	6750397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004240.2	+1	validated	p.P441L	0.922	91	0%	52	46.2%	43	13.9%	benign(0.123)	tolerated(0.25)	neutral(0.047)	superfamily_SH3-domain
MUC16	94025	genome.wustl.edu	37	19	9000565	9000565	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_024690.2	-1	validated	p.T13473	0.000	453	0.7%	618	34.3%	3	66.6%	-	-	-	HMMSmart_SM00200,superfamily_SEA domain
ZNF442	79973	genome.wustl.edu	37	19	12460636	12460636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_030824.2	-1	validated	p.R588Q	0.000	269	0.7%	423	39.5%	2	50%	benign(0.023)	tolerated(0.73)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RFX1	5989	genome.wustl.edu	37	19	14076300	14076300	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002918.4	-1	validated	p.H724	0.055	210	0%	261	14.2%	11	0%	-	-	-	NULL
ZNF333	84449	genome.wustl.edu	37	19	14829567	14829567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_032433.2	+1	validated	p.K476N	1.000	137	0%	181	35.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
EMR2	30817	genome.wustl.edu	37	19	14862336	14862336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_013447.2	-1	reviewed	p.L646F	0.000	149	0%	146	30.8%	1	0%	benign(0.052)	tolerated(0.26)	neutral(0.037)	HMMPfam_7tm_2
SYDE1	85360	genome.wustl.edu	37	19	15223273	15223273	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_033025.4	+1	provisional	p.R565	0.997	63	0%	68	33.8%	24	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
NOTCH3	4854	genome.wustl.edu	37	19	15276271	15276271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000435.2	-1	reviewed	p.T1908M	0.989	94	2.1%	107	31.8%	246	12.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BRD4	23476	genome.wustl.edu	37	19	15349732	15349732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_058243.2	-1	reviewed	p.R1281Q	1.000	22	0%	11	45.5%	39	41%	probably_damaging(0.998)	-	-	NULL
AP1M1	8907	genome.wustl.edu	37	19	16318899	16318899	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001130524.1	+1	reviewed	p.L113	1.000	196	0%	174	43.7%	45	15.5%	-	-	-	superfamily_Longin_like
ARHGAP33	115703	genome.wustl.edu	37	19	36269430	36269430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_052948.3	+1	reviewed	p.R112Q	0.994	106	0%	98	13.3%	2	0%	benign(0.166)	tolerated(0.09)	neutral(0.311)	superfamily_PX
ZNF570	148268	genome.wustl.edu	37	19	37975632	37975632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_144694.1	+1	provisional	p.R370C	0.748	187	0%	219	33.8%	2	0%	probably_damaging(0.997)	tolerated(0.19)	deleterious(0.516)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38189094	38189094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_032689.4	-1	validated	p.M646I	0.004	212	0%	272	34.9%	2	50%	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HNRNPUL1	11100	genome.wustl.edu	37	19	41808765	41808765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007040.3	+1	reviewed	p.R628H	1.000	56	0%	55	38.2%	86	24.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZNF816	125893	genome.wustl.edu	37	19	53454681	53454681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001031665.1	-1	validated	p.Q116R	0.008	382	0%	460	18.3%	5	20%	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	NULL
TMC4	147798	genome.wustl.edu	37	19	54675821	54675821	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001145303.1	-1	validated	p.L43	0.987	76	0%	65	29.2%	12	41.6%	-	-	-	NULL
HSPBP1	23640	genome.wustl.edu	37	19	55777607	55777607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001130106.1	-1	validated	p.D230N	1.000	41	0%	25	60%	61	24.5%	possibly_damaging(0.716)	tolerated(0.09)	deleterious(0.555)	superfamily_ARM repeat
ZSCAN18	65982	genome.wustl.edu	37	19	58619251	58619251	+	RNA	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NR_027135.1	-1	validated	NULL	0.000	46	0%	57	24.6%	0	-	-	-	-	-
NINL	22981	genome.wustl.edu	37	20	25472135	25472135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_025176.4	-1	validated	p.R446M	0.026	49	0%	45	40%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNTA1	6640	genome.wustl.edu	37	20	31998073	31998073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003098.2	-1	reviewed	p.R369C	1.000	35	0%	25	44%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RBPJL	11317	genome.wustl.edu	37	20	43936838	43936838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_014276.2	+1	reviewed	p.E26D	1.000	122	0%	116	37.9%	0	-	possibly_damaging(0.643)	tolerated(0.24)	neutral(0.263)	NULL
BMP7	655	genome.wustl.edu	37	20	55748340	55748340	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000433911	-1	known	p.R276C	0.995	125	0%	160	37.5%	1	0%	-	-	-	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines
MIR124-3	406909	genome.wustl.edu	37	20	61809921	61809921	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000384866	+1	known	NULL	1.000	11	0%	18	33.3%	0	-	-	-	-	-
USP25	29761	genome.wustl.edu	37	21	17236657	17236657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_013396.3	+1	validated	p.R803H	1.000	234	0%	257	33.9%	18	5.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
APP	351	genome.wustl.edu	37	21	27372418	27372418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_000484.3	-1	reviewed	p.K315N	1.000	116	0%	107	29.9%	587	26.5%	unknown(0)	deleterious(0.02)	-	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,superfamily_BPTI-like
ITSN1	6453	genome.wustl.edu	37	21	35138239	35138239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003024.2	+1	reviewed	p.M283I	1.000	183	0%	249	32.9%	9	11.1%	unknown(0)	deleterious(0)	-	HMMSmart_SM00027,HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
PCBP3	54039	genome.wustl.edu	37	21	47316228	47316228	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_020528.2	+1	reviewed	p.E39	1.000	123	0%	146	41.8%	3	0%	-	-	-	NULL
MYH9	4627	genome.wustl.edu	37	22	36681937	36681937	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002473.4	-1	reviewed	p.D1708	0.696	85	0%	63	42.9%	532	11.8%	-	-	-	HMMPfam_Myosin_tail_1
SREBF2	6721	genome.wustl.edu	37	22	42289188	42289188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004599.2	+1	reviewed	p.R759H	1.000	136	0%	103	18.4%	39	12.8%	possibly_damaging(0.807)	tolerated(0.07)	deleterious(0.623)	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	709	709	+	RNA	SNP	G	G	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000389680	+1	known	NULL	NULL	1011	0%	443	74.5%	3263	80.7%	-	-	-	-
IL3RA	3563	genome.wustl.edu	37	X	1471355	1471355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_002183.2	+1	reviewed	p.F191S	0.000	386	0%	347	32.6%	32	0%	benign(0.001)	tolerated(0.42)	neutral(0.014)	superfamily_FN_III-like
ASMTL	8623	genome.wustl.edu	37	X	1540581	1540581	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_004192.3	-1	reviewed	p.A405	0.011	462	0.2%	577	35.7%	36	16.6%	-	-	-	HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
MXRA5	25878	genome.wustl.edu	37	X	3239694	3239694	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015419.3	-1	reviewed	p.T1344	0.000	300	0%	423	35.5%	15	6.6%	-	-	-	NULL
MXRA5	25878	genome.wustl.edu	37	X	3242913	3242913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015419.3	-1	reviewed	p.K271N	0.758	253	0.4%	279	30.8%	7	0%	possibly_damaging(0.919)	tolerated(0.08)	deleterious(0.669)	HMMSmart_SM00082,superfamily_L domain-like
NLGN4X	57502	genome.wustl.edu	37	X	5821640	5821640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_020742.2	-1	reviewed	p.G360D	1.000	208	0.5%	183	40.4%	0	-	possibly_damaging(0.844)	tolerated(0.16)	neutral(0.383)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
GEMIN8	54960	genome.wustl.edu	37	X	14027101	14027101	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001042479.1	-1	reviewed	p.Q220	1.000	76	0%	94	33%	25	0%	-	-	-	NULL
CA5B	11238	genome.wustl.edu	37	X	15800723	15800723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007220.3	+1	reviewed	p.R297Q	0.127	217	0.5%	224	35.3%	4	25%	benign(0.003)	tolerated(0.6)	neutral(0.004)	NULL
CASK	8573	genome.wustl.edu	37	X	41390295	41390295	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003688.3	-1	reviewed	p.Q824*	1.000	271	0%	311	36.3%	17	23.5%	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_GuKc,superfamily_SSF52540
UBA1	7317	genome.wustl.edu	37	X	47062426	47062426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_003334.3	+1	reviewed	p.T440A	1.000	230	0%	200	33.5%	133	11.2%	benign(0.004)	tolerated(0.32)	neutral(0.024)	NULL
CDK16	5127	genome.wustl.edu	37	X	47085615	47085615	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	ENST00000428400	+1	known	p.V348	0.002	139	0%	96	37.5%	4	0%	-	-	-	NULL
ZNF41	7592	genome.wustl.edu	37	X	47315702	47315702	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007130.2	-1	reviewed	p.T56	0.970	215	0%	240	42.5%	6	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
WDR45	11152	genome.wustl.edu	37	X	48934103	48934103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_007075.3	-1	reviewed	p.R142Q	1.000	429	0.2%	486	35.8%	76	0%	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	superfamily_WD40_like
GPKOW	27238	genome.wustl.edu	37	X	48973985	48973985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_015698.4	-1	validated	p.V249A	0.028	137	0%	95	29.5%	19	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_KOW,HMMSmart_KOW
TRO	7216	genome.wustl.edu	37	X	54957331	54957331	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001039705.1	+1	reviewed	p.T1392S	0.001	102	0%	127	37%	38	42.1%	possibly_damaging(0.891)	tolerated(0.06)	deleterious(0.673)	NULL
LAS1L	81887	genome.wustl.edu	37	X	64751259	64751259	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_031206.4	-1	validated	p.P164	0.999	451	0%	578	32.5%	12	0%	-	-	-	HMMPfam_Las1
ACRC	93953	genome.wustl.edu	37	X	70823892	70823892	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_052957.4	+1	validated	p.P255	0.006	273	0%	239	12.6%	0	-	-	-	-	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73963292	73963292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001008537.2	-1	validated	p.P367H	0.926	218	0%	259	37.5%	0	-	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
PCDH19	57526	genome.wustl.edu	37	X	99661983	99661983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001105243.1	-1	reviewed	p.G538D	0.994	183	0%	219	38.8%	16	93.7%	possibly_damaging(0.813)	tolerated(0.11)	deleterious(0.579)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
NKAP	79576	genome.wustl.edu	37	X	119070294	119070294	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_024528.3	-1	reviewed	p.S213	0.624	468	0%	656	37%	15	0%	-	-	-	NULL
CT47B1	643311	genome.wustl.edu	37	X	120008908	120008908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001145718.1	-1	validated	p.A206V	0.000	213	0%	157	31.8%	0	-	unknown(0)	tolerated(0.2)	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129148372	129148372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_021946.3	+1	reviewed	p.D542N	0.053	76	0%	86	41.9%	5	0%	benign(0.112)	deleterious(0)	neutral(0.454)	NULL
ELF4	2000	genome.wustl.edu	37	X	129208049	129208049	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001127197.1	-1	reviewed	p.S105	0.000	426	0%	458	33%	9	0%	-	-	-	NULL
HCFC1	3054	genome.wustl.edu	37	X	153236189	153236189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_005334.2	-1	reviewed	p.G35S	1.000	58	0%	52	38.5%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
FLNA	2316	genome.wustl.edu	37	X	153581221	153581221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11U-01A-11D-A122-09	TCGA-B5-A11U-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	55a56538-7ae6-44b8-8eca-2576b9334be2	019d284d-5381-4c5e-a089-5e72c027ef84	NM_001110556.1	-1	reviewed	p.G2100R	1.000	171	0%	224	31.7%	453	0.2%	possibly_damaging(0.837)	deleterious(0.05)	deleterious(0.665)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
