Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALAS2	212	genome.wustl.edu	37	X	55042138	55042138	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	55042138	55042138	G	T	SNP	ALAS2	NM_000032.4	human	genbank	58_37c	-1	reviewed	silent	c.1041	p.S347	0.990	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases	PatternScan_AA_TRANSFER_CLASS_2,HMMPfam_Aminotran_1_2,HMMPfam_Preseq_ALAS,superfamily_PLP-dependent transferases	-	no_errors
ASMTL	8623	genome.wustl.edu	37	X	1522276	1522276	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	1522276	1522276	C	T	SNP	ASMTL	NM_004192.3	human	genbank	58_37c	-1	reviewed	silent	c.1752	p.E584	0.991	HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"HMMPfam_Methyltransf_2,HMMPfam_Maf,superfamily_""Winged helix"" DNA-binding domain,superfamily_Maf/Ham1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
CDH6	1004	genome.wustl.edu	37	5	31294263	31294263	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	5	31294263	31294263	C	T	SNP	CDH6	NM_004932.2	human	genbank	58_37c	+1	reviewed	silent	c.423	p.P141	0.039	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
FBN3	84467	genome.wustl.edu	37	19	8191626	8191626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	19	8191626	8191626	C	T	SNP	FBN3	NM_032447.3	human	genbank	58_37c	-1	reviewed	missense	c.2387	p.R796Q	0.996	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FRMPD4	9758	genome.wustl.edu	37	X	12722503	12722503	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	12722503	12722503	C	A	SNP	FRMPD4	NM_014728.3	human	genbank	58_37c	+1	reviewed	missense	c.1096	p.L366I	1.000	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors
ITGB3	3690	genome.wustl.edu	37	17	45367609	45367609	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	17	45367609	45367609	A	G	SNP	ITGB3	NM_000212.2	human	genbank	58_37c	+1	reviewed	missense	c.1094	p.N365S	1.000	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains	HMMPfam_Integrin_beta,HMMSmart_SM00187,HMMSmart_SM00423,HMMPfam_Integrin_B_tail,superfamily_Integrin beta tail domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,HMMPfam_Integrin_b_cyt,PatternScan_INTEGRIN_BETA,superfamily_vWA-like,superfamily_EGF/Laminin,superfamily_Integrin domains	-	no_errors
LCP1	3936	genome.wustl.edu	37	13	46732779	46732779	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	13	46732779	46732779	T	C	SNP	LCP1	NM_002298.4	human	genbank	58_37c	-1	reviewed	missense	c.236	p.H79R	1.000	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMSmart_EFh,superfamily_Calponin-homology,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
LOC653073	653073	genome.wustl.edu	37	15	30382467	30382467	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	15	30382467	30382467	A	G	SNP	LOC653073	XM_001724382.2	human	genbank	58_37c	+1	model	missense	c.1184	p.Q395R	0.998	NULL	NULL	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170135997	170135997	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	170135997	170135997	C	A	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.1450	p.V484L	1.000	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MYO18A	399687	genome.wustl.edu	37	17	27445423	27445423	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	17	27445423	27445423	T	C	SNP	MYO18A	NM_078471.3	human	genbank	58_37c	-1	validated	missense	c.1865	p.N622S	0.999	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYPN	84665	genome.wustl.edu	37	10	69961611	69961611	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	69961611	69961611	G	T	SNP	MYPN	NM_032578.2	human	genbank	58_37c	+1	validated	silent	c.3519	p.V1173	1.000	HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ER_TARGET,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NOTCH2	4853	genome.wustl.edu	37	1	120465265	120465265	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	1	120465265	120465265	C	A	SNP	NOTCH2	NM_024408.2	human	genbank	58_37c	-1	reviewed	missense	c.4996	p.V1666F	0.999	HMMPfam_NODP	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_NL,superfamily_Notch_region,HMMSmart_EGF_CA,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
PCDH19	57526	genome.wustl.edu	37	X	99663130	99663130	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	99663130	99663130	G	C	SNP	PCDH19	NM_001105243.1	human	genbank	58_37c	-1	reviewed	missense	c.466	p.P156A	1.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PHF20	51230	genome.wustl.edu	37	20	34519315	34519315	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	20	34519315	34519315	A	T	SNP	PHF20	NM_016436.4	human	genbank	58_37c	+1	validated	missense	c.2249	p.Q750L	1.000	NULL	HMMSmart_SM00249,HMMSmart_SM00333,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36252921	36252935	+	In_Frame_Del	DEL	AGCATTTCTCAGCTC	AGCATTTCTCAGCTC	-	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	AGCATTTCTCAGCTC	AGCATTTCTCAGCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	21	36252921	36252935	AGCATTTCTCAGCTC	-	DEL	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.441_427	p.ELRNA143in_frame_del	0.001:1.000:1.000:0.995:1.000:1.000:1.000:1.000:0.923:0.846:1.000:1.000:1.000:1.000:1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SEH1L	81929	genome.wustl.edu	37	18	12971157	12971157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	18	12971157	12971157	G	A	SNP	SEH1L	NM_001013437.1	human	genbank	58_37c	+1	reviewed	missense	c.527	p.R176H	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
SH3D19	152503	genome.wustl.edu	37	4	152096472	152096472	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	4	152096472	152096472	G	T	SNP	SH3D19	NM_001009555.3	human	genbank	58_37c	-1	validated	missense	c.44	p.S15Y	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
SLCO2A1	6578	genome.wustl.edu	37	3	133674014	133674014	+	Missense_Mutation	SNP	C	C	T	rs148547180	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	3	133674014	133674014	C	T	SNP	SLCO2A1	NM_005630.2	human	genbank	58_37c	-1	validated	missense	c.421	p.E141K	0.750	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
STAT4	6775	genome.wustl.edu	37	2	191922752	191922752	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	191922752	191922752	G	A	SNP	STAT4	NM_003151.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1198	p.R400*	1.000	superfamily_P53_like_DNA_bnd,HMMPfam_STAT_bind	HMMPfam_SH2,HMMSmart_SH2,superfamily_P53_like_DNA_bnd,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_SSF55550	-	no_errors
TNRC18	27320	genome.wustl.edu	37	7	5427950	5427950	+	Missense_Mutation	SNP	G	A	A	rs112785272	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	7	5427950	5427950	G	A	SNP	TNRC18	NM_001080495.2	human	genbank	58_37c	-1	provisional	missense	c.1505	p.P502L	0.932	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
ZNF804B	219578	genome.wustl.edu	37	7	88964843	88964843	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	7	88964843	88964843	T	C	SNP	ZNF804B	NM_181646.2	human	genbank	58_37c	+1	provisional	silent	c.2547	p.T849	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
