Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
SKI	6497	broad.mit.edu	37	1	2160775	2160775	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:2160775C>T	uc001aja.3	+	1	642	c.570C>T	c.(568-570)CTC>CTT	p.L190L		NM_003036	NP_003027	P12755	SKI_HUMAN	v-ski sarcoma viral oncogene homolog	190					anterior/posterior axis specification|BMP signaling pathway|bone morphogenesis|cell motility|cell proliferation|embryonic limb morphogenesis|face morphogenesis|lens morphogenesis in camera-type eye|myelination in peripheral nervous system|myotube differentiation|negative regulation of activin receptor signaling pathway|negative regulation of BMP signaling pathway|negative regulation of fibroblast proliferation|negative regulation of osteoblast differentiation|negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|neural tube closure|nose morphogenesis|olfactory bulb development|palate development|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|protein homotrimerization|regulation of apoptosis|retina development in camera-type eye|skeletal muscle fiber development|SMAD protein signal transduction|somatic stem cell maintenance|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|PML body|transcription factor complex|transcriptional repressor complex	histone deacetylase inhibitor activity|nucleotide binding|protein domain specific binding|protein kinase binding|repressing transcription factor binding|SMAD binding|transcription corepressor activity|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(77;0.000139)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)			Epithelial(90;2.14e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.72e-29)|GBM - Glioblastoma multiforme(42;2.45e-08)|Colorectal(212;5.33e-05)|COAD - Colon adenocarcinoma(227;0.000228)|Kidney(185;0.00268)|BRCA - Breast invasive adenocarcinoma(365;0.00471)|STAD - Stomach adenocarcinoma(132;0.0147)|KIRC - Kidney renal clear cell carcinoma(229;0.0385)|Lung(427;0.207)		ACGCGCTGCTCTACGGCGGCG	0.692													4	10					0	0	0	0
ASAP3	55616	broad.mit.edu	37	1	23759683	23759683	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:23759683G>A	uc001bha.2	-	22	2334	c.2210C>T	c.(2209-2211)GCC>GTC	p.A737V	ASAP3_uc001bgy.1_Missense_Mutation_p.A241V|ASAP3_uc001bgz.1_RNA|ASAP3_uc010odz.1_Missense_Mutation_p.A627V|ASAP3_uc010oea.1_Missense_Mutation_p.A728V|ASAP3_uc001bhb.2_Missense_Mutation_p.A260V	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	737					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCCCAGGCTGGCGACAGTCTC	0.602													81	93					0	0	0	0
C1orf91	56063	broad.mit.edu	37	1	32682865	32682865	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:32682865C>G	uc009vub.1	-	4	326	c.323G>C	c.(322-324)GGA>GCA	p.G108A	C1orf91_uc001buo.3_RNA|C1orf91_uc001bup.3_RNA|C1orf91_uc010oha.1_RNA|C1orf91_uc001buq.3_Missense_Mutation_p.G108A			Q8WY98	TM234_HUMAN	RecName: Full=UPF0546 membrane protein C1orf91;	108						integral to membrane					0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CTTACGTTTTCCACCAATATC	0.522													29	48					0	0	0	0
KIAA1522	57648	broad.mit.edu	37	1	33236757	33236757	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:33236757C>G	uc001bvv.2	+	6	1936	c.1800C>G	c.(1798-1800)GTC>GTG	p.V600V	KIAA1522_uc001bvu.1_Silent_p.V659V|KIAA1522_uc010ohm.1_Silent_p.V611V|KIAA1522_uc010ohn.1_Intron	NM_020888	NP_065939	Q9P206	K1522_HUMAN	hypothetical protein LOC57648	600	Pro-rich.										0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				ACAGGTTTGTCATACCTCCTC	0.632													80	103					0	0	0	0
CSMD2	114784	broad.mit.edu	37	1	34258100	34258100	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:34258100C>G	uc001bxn.1	-	11	1383	c.1354G>C	c.(1354-1356)GAT>CAT	p.D452H	CSMD2_uc001bxm.1_Missense_Mutation_p.D492H	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	452	CUB 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTCTCCAAATCAAACTCCTCA	0.552													29	65					0	0	0	0
INPP5B	3633	broad.mit.edu	37	1	38339682	38339682	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:38339682C>T	uc001ccg.1	-	18	2028	c.1934G>A	c.(1933-1935)AGA>AAA	p.R645K	INPP5B_uc009vvk.1_Missense_Mutation_p.R586K|INPP5B_uc001ccf.1_Missense_Mutation_p.R481K|INPP5B_uc010oij.1_RNA	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	725					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GAGGAAGCCTCTGCTGGGGTT	0.438													18	18					0	0	0	0
RLF	6018	broad.mit.edu	37	1	40627251	40627251	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:40627251G>A	uc001cfc.3	+	1	211	c.180G>A	c.(178-180)CTG>CTA	p.L60L		NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	60					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			AGACAGAGCTGAGGGAGCAAG	0.617													32	43					0	0	0	0
COL9A2	1298	broad.mit.edu	37	1	40775622	40775622	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:40775622C>G	uc001cfh.1	-	16	904	c.834G>C	c.(832-834)GAG>GAC	p.E278D	COL9A2_uc001cfi.1_Missense_Mutation_p.E97D	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	278	Triple-helical region 3 (COL3).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			CGTCACCCTTCTCCCCAGCTC	0.587													50	81					0	0	0	0
TOE1	114034	broad.mit.edu	37	1	45808853	45808853	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:45808853C>T	uc009vxq.2	+	8	1595	c.1012C>T	c.(1012-1014)CGG>TGG	p.R338W	MUTYH_uc001cno.2_5'Flank|MUTYH_uc001cnk.2_5'Flank|MUTYH_uc010oll.1_5'Flank|MUTYH_uc001cnm.2_5'Flank|MUTYH_uc001cnl.2_5'Flank|MUTYH_uc009vxp.2_5'Flank|MUTYH_uc001cnn.2_5'Flank|TOE1_uc001cnq.3_RNA|TOE1_uc010olm.1_Missense_Mutation_p.R258W|TOE1_uc001cnr.3_RNA	NM_025077	NP_079353	Q96GM8	TOE1_HUMAN	target of EGR1, member 1 (nuclear)	338	Nuclear localization signal.					nuclear speck|nucleolus	nucleic acid binding|zinc ion binding			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)					CAAGCGGCGACGGCGACGACG	0.567													81	129					0	0	0	0
PARS2	25973	broad.mit.edu	37	1	55224213	55224213	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:55224213C>G	uc001cxy.2	-	2	705	c.622G>C	c.(622-624)GAT>CAT	p.D208H		NM_152268	NP_689481	Q7L3T8	SYPM_HUMAN	prolyl-tRNA synthetase (mitochondrial)(putative)	208					prolyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|proline-tRNA ligase activity			ovary(2)	2					L-Proline(DB00172)	GTGTACATATCCTTCATGTAA	0.552													54	56					0	0	0	0
SGIP1	84251	broad.mit.edu	37	1	67109271	67109271	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:67109271G>A	uc001dcr.2	+	7	545	c.328G>A	c.(328-330)GAA>AAA	p.E110K	SGIP1_uc010opd.1_5'UTR|SGIP1_uc001dcs.2_5'UTR|SGIP1_uc001dct.2_5'UTR	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	110	Poly-Glu.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						ATCGGAAGAAGAAGAAGAATC	0.343													22	39					0	0	0	0
ODF2L	57489	broad.mit.edu	37	1	86818601	86818601	+	Missense_Mutation	SNP	C	G	G	rs149282656	byFrequency	TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:86818601C>G	uc001dll.1	-	17	2174	c.1834G>C	c.(1834-1836)GAA>CAA	p.E612Q	ODF2L_uc001dlm.1_Missense_Mutation_p.E596Q|ODF2L_uc001dln.2_Missense_Mutation_p.E583Q|ODF2L_uc001dlo.2_Missense_Mutation_p.E452Q|ODF2L_uc001dlp.2_Missense_Mutation_p.E559Q|ODF2L_uc010osg.1_Missense_Mutation_p.E530Q	NM_020729	NP_065780	Q9ULJ1	ODF2L_HUMAN	outer dense fiber of sperm tails 2-like isoform	612	Potential.					centrosome				ovary(1)	1				all cancers(265;0.0313)|Epithelial(280;0.0611)		AGCTCAGTTTCCAGATCTAAT	0.279													23	31					0	0	0	0
CCDC76	54482	broad.mit.edu	37	1	100613702	100613702	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:100613702G>T	uc001dsv.2	+	10	1089	c.1070G>T	c.(1069-1071)GGA>GTA	p.G357V	CCDC76_uc010ouf.1_RNA|CCDC76_uc009wea.2_Intron	NM_019083	NP_061956	Q9NUP7	TRM13_HUMAN	coiled-coil domain containing 76	357					tRNA processing		metal ion binding|methyltransferase activity			ovary(1)	1		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0814)|all cancers(265;0.133)|COAD - Colon adenocarcinoma(174;0.146)|Lung(183;0.194)		CTAGGCCTTGGAGCAGTGGAA	0.458													19	39					1.96292e-10	2.04633e-10	1	0
PROK1	84432	broad.mit.edu	37	1	110998955	110998955	+	Missense_Mutation	SNP	G	C	C	rs148436202		TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:110998955G>C	uc001dzs.2	+	3	351	c.300G>C	c.(298-300)TTG>TTC	p.L100F		NM_032414	NP_115790	P58294	PROK1_HUMAN	prokineticin 1 precursor	100					angiogenesis|positive regulation of cell division	extracellular region	growth factor activity				0		all_cancers(81;6.23e-06)|all_epithelial(167;2.12e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0239)|all cancers(265;0.0699)|Epithelial(280;0.0753)|Colorectal(144;0.105)|LUSC - Lung squamous cell carcinoma(189;0.135)		CCATGGACTTGAAGAACATCA	0.537													9	94					0	0	0	0
FAM19A3	284467	broad.mit.edu	37	1	113265703	113265703	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:113265703G>A	uc001ecv.2	+	3	250	c.181G>A	c.(181-183)GAG>AAG	p.E61K	FAM19A3_uc001ecu.2_Missense_Mutation_p.E61K|FAM19A3_uc010owk.1_RNA|FAM19A3_uc010owl.1_RNA	NM_182759	NP_877436	Q7Z5A8	F19A3_HUMAN	family with sequence similarity 19 (chemokine	61						extracellular region					0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAACCGCATCGAGGAGCGCTC	0.657													16	22					0	0	0	0
CSDE1	7812	broad.mit.edu	37	1	115275262	115275262	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:115275262G>C	uc001efk.2	-	10	1479	c.1013C>G	c.(1012-1014)TCA>TGA	p.S338*	CSDE1_uc001efi.2_Nonsense_Mutation_p.S384*|CSDE1_uc001efj.2_RNA|CSDE1_uc001efl.2_Nonsense_Mutation_p.S307*|CSDE1_uc001efm.2_Nonsense_Mutation_p.S353*|CSDE1_uc009wgv.2_Nonsense_Mutation_p.S338*|CSDE1_uc001efn.2_Nonsense_Mutation_p.S307*	NM_001007553	NP_001007554	O75534	CSDE1_HUMAN	upstream of NRAS isoform 1	338					male gonad development|regulation of transcription, DNA-dependent	cytoplasm	DNA binding|protein binding|RNA binding			ovary(1)	1	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;2.21e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAATGTATTTGACAGAACTTC	0.373													13	108					0	0	0	0
IGSF3	3321	broad.mit.edu	37	1	117158899	117158899	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:117158899A>G	uc001egr.1	-	3	929	c.224T>C	c.(223-225)ATG>ACG	p.M75T	IGSF3_uc001egq.1_Missense_Mutation_p.M75T	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	75	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		GGAAGAGTCCATGGTGCTGAC	0.542													3	48					0	0	0	0
CD101	9398	broad.mit.edu	37	1	117554213	117554213	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:117554213C>G	uc010oxb.1	+	3	524	c.466C>G	c.(466-468)CTC>GTC	p.L156V	CD101_uc009whd.2_Missense_Mutation_p.L156V|CD101_uc010oxc.1_Missense_Mutation_p.L156V|CD101_uc010oxd.1_Intron	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	156	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TTCTCAGACTCTCGGTAAGGA	0.512													39	73					0	0	0	0
FAM46C	54855	broad.mit.edu	37	1	118165574	118165574	+	Silent	SNP	C	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:118165574C>A	uc001ehe.2	+	2	283	c.84C>A	c.(82-84)GTC>GTA	p.V28V		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	28											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		TGCATGAGGTCCTCACTGAAG	0.557										Multiple Myeloma(3;1.13e-06)			14	64					1.49906e-05	1.52813e-05	1	0
ZNF697	90874	broad.mit.edu	37	1	120165544	120165544	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:120165544G>A	uc001ehy.1	-	3	1536	c.1422C>T	c.(1420-1422)TTC>TTT	p.F474F		NM_001080470	NP_001073939	Q5TEC3	ZN697_HUMAN	zinc finger protein 697	474	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0266)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0577)		AGAAGTCGCTGAAGCGCTTCT	0.647													14	9					0	0	0	0
PIAS3	10401	broad.mit.edu	37	1	145581457	145581458	+	Nonsense_Mutation	DNP	GC	TT	TT			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:145581457_145581458GC>TT	uc001eoc.1	+	9	1129_1130	c.1038_1039GC>TT	c.(1036-1041)CTGCAG>CTTTAG	p.Q347*	NBPF10_uc001emp.3_Intron|PIAS3_uc001eod.1_Nonsense_Mutation_p.Q16*	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	347	SP-RING-type.				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCGCCCACCTGCAGAGCTTCGA	0.505													90	73					0	0	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150525982	150525982	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:150525982G>A	uc001eux.2	+	6	751	c.515G>A	c.(514-516)CGC>CAC	p.R172H	ADAMTSL4_uc001euw.2_Missense_Mutation_p.R172H|ADAMTSL4_uc009wlw.2_Missense_Mutation_p.R172H|ADAMTSL4_uc010pcg.1_Missense_Mutation_p.R172H	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	172					apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CACCGGAACCGCAGGCACCCT	0.577													5	153					0	0	0	0
FAM63A	55793	broad.mit.edu	37	1	150972984	150972984	+	Silent	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:150972984G>C	uc001ewf.2	-	6	2368	c.684C>G	c.(682-684)GTC>GTG	p.V228V	FAM63A_uc001ewc.2_Silent_p.V86V|FAM63A_uc010pcm.1_Silent_p.V133V|FAM63A_uc001ewd.2_Silent_p.V86V|FAM63A_uc001ewe.2_Silent_p.V62V|FAM63A_uc010pcn.1_Silent_p.V276V|FAM63A_uc001ewg.2_Silent_p.V228V	NM_018379	NP_001156731	Q8N5J2	FA63A_HUMAN	hypothetical protein LOC55793 isoform 1	228							protein binding			ovary(1)	1	all_lung(15;1.09e-34)|Lung NSC(24;1.1e-30)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCAGGTCAAAGACACTGCACT	0.527													45	112					0	0	0	0
FLG2	388698	broad.mit.edu	37	1	152327320	152327320	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:152327320G>C	uc001ezw.3	-	3	3015	c.2942C>G	c.(2941-2943)TCA>TGA	p.S981*	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	981	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGATTTTCCTGAGCCTGACTC	0.493													12	592					0	0	0	0
S100A4	6275	broad.mit.edu	37	1	153516241	153516241	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:153516241C>G	uc001fby.2	-	4	418	c.300G>C	c.(298-300)AAG>AAC	p.K100N	S100A5_uc001fbx.2_5'Flank|S100A4_uc001fbz.2_Missense_Mutation_p.K100N|uc009wog.1_5'Flank	NM_019554	NP_062427	P26447	S10A4_HUMAN	S100 calcium-binding protein A4	100					epithelial to mesenchymal transition|positive regulation of I-kappaB kinase/NF-kappaB cascade	nucleus|perinuclear region of cytoplasm	calcium ion binding|RAGE receptor binding				0	all_lung(78;5.98e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTTTTCATTTCTTCCTGGGCT	0.527													85	274					0	0	0	0
NPR1	4881	broad.mit.edu	37	1	153665640	153665640	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:153665640C>G	uc001fcs.3	+	21	3511	c.3090C>G	c.(3088-3090)TTC>TTG	p.F1030L	NPR1_uc010pdz.1_Missense_Mutation_p.F776L|NPR1_uc010pea.1_Missense_Mutation_p.F508L	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	1030	Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	TTGGTGGTTTCGAGCTGGAGC	0.552													41	112					0	0	0	0
DCST2	127579	broad.mit.edu	37	1	155002952	155002952	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:155002952C>G	uc001fgm.2	-	6	1055	c.975G>C	c.(973-975)CTG>CTC	p.L325L	DCST2_uc009wpb.2_RNA	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	325	Helical; (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TGAAGCCCATCAGAGCCAGGG	0.662													5	69					0	0	0	0
BCAN	63827	broad.mit.edu	37	1	156626846	156626846	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:156626846C>G	uc001fpp.2	+	10	2503	c.2167C>G	c.(2167-2169)CTG>GTG	p.L723V		NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	723	C-type lectin.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CGGCGCGCATCTGGCCAGCAT	0.597													29	86					0	0	0	0
OR6N1	128372	broad.mit.edu	37	1	158735618	158735618	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:158735618G>A	uc010piq.1	-	1	855	c.855C>T	c.(853-855)CTC>CTT	p.L285L		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TGAAGGGGTTGAGGAAGGGTG	0.517													72	200					0	0	0	0
TBX19	9095	broad.mit.edu	37	1	168281973	168281973	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:168281973C>T	uc001gfl.2	+	8	1131	c.1080C>T	c.(1078-1080)AGC>AGT	p.S360S	TBX19_uc001gfj.3_Silent_p.S228S|TBX19_uc001gfm.2_Silent_p.S63S	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	360					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GGACCATCAGCAATGGTGCCG	0.617													35	83					0	0	0	0
ABL2	27	broad.mit.edu	37	1	179095631	179095631	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:179095631G>A	uc001gmj.3	-	4	855	c.568C>T	c.(568-570)CTA>TTA	p.L190L	ABL2_uc010pnf.1_Silent_p.L190L|ABL2_uc010png.1_Silent_p.L169L|ABL2_uc010pnh.1_Silent_p.L169L|ABL2_uc009wxe.2_Silent_p.L169L|ABL2_uc001gmg.3_Silent_p.L175L|ABL2_uc001gmi.3_Silent_p.L175L|ABL2_uc001gmh.3_Silent_p.L154L|ABL2_uc010pne.1_Silent_p.L154L|ABL2_uc009wxf.1_Silent_p.L175L|ABL2_uc001gmk.2_Silent_p.L154L	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	190	SH2.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding	p.A190T(1)		lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	CCATTGATTAGACTGCTGAGC	0.537			T	ETV6	AML								48	140					0	0	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200818403	200818403	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:200818403G>C	uc001gvl.2	+	12	2809	c.2539G>C	c.(2539-2541)GAT>CAT	p.D847H	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.D836H|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.D820H	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	847						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GTCACTGGCAGATATAAAAGA	0.453													48	153					0	0	0	0
KLHL12	59349	broad.mit.edu	37	1	202864773	202864773	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:202864773C>T	uc001gyo.1	-	8	1212	c.1012G>A	c.(1012-1014)GAT>AAT	p.D338N	KLHL12_uc001gym.1_Missense_Mutation_p.D71N|KLHL12_uc001gyn.1_Missense_Mutation_p.D188N|KLHL12_uc010pqc.1_Missense_Mutation_p.D376N|KLHL12_uc009xah.1_Intron	NM_021633	NP_067646	Q53G59	KLH12_HUMAN	kelch-like 12	338	Kelch 2.				Wnt receptor signaling pathway		protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.166)			GAACGGCCATCATAGCCACCA	0.507													24	69					0	0	0	0
MYBPH	4608	broad.mit.edu	37	1	203144777	203144777	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:203144777G>C	uc001gzh.1	-	1	166	c.107C>G	c.(106-108)TCA>TGA	p.S36*	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	36					cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		GGTGGACTCTGATACTGCCAC	0.622													85	218					0	0	0	0
FLVCR1	28982	broad.mit.edu	37	1	213032530	213032530	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:213032530C>G	uc001hjt.2	+	1	934	c.736C>G	c.(736-738)CAG>GAG	p.Q246E	LQK1_uc001hjr.3_5'Flank|LQK1_uc001hjs.3_5'Flank	NM_014053	NP_054772	Q9Y5Y0	FLVC1_HUMAN	feline leukemia virus subgroup C cellular	246	Helical; (Potential).				cell death|cellular iron ion homeostasis|heme export|transmembrane transport	integral to plasma membrane	heme transporter activity|protein binding|receptor activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.00733)|all cancers(67;0.013)|GBM - Glioblastoma multiforme(131;0.0845)|Epithelial(68;0.11)		GCTGGGCAATCAGGTAAGTAC	0.562													40	112					0	0	0	0
HHIPL2	79802	broad.mit.edu	37	1	222721362	222721362	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:222721362G>C	uc001hnh.1	-	1	83	c.25C>G	c.(25-27)CTG>GTG	p.L9V		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	9					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CCACCACACAGATTAGGAGTG	0.547													23	47					0	0	0	0
PARP1	142	broad.mit.edu	37	1	226567800	226567800	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:226567800C>G	uc001hqd.3	-	10	1537	c.1366G>C	c.(1366-1368)GAG>CAG	p.E456Q		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	456	Automodification domain.|BRCT.				cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		AGGAAGTCCTCAGACACAACT	0.488								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					18	48					0	0	0	0
WNT9A	7483	broad.mit.edu	37	1	228113207	228113207	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:228113207C>T	uc001hri.2	-	2	197	c.109G>A	c.(109-111)GAG>AAG	p.E37K		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	37					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)				GTCAGGGGCTCGCTGCCCGTC	0.711													7	10					0	0	0	0
C1orf96	126731	broad.mit.edu	37	1	229478177	229478177	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:229478177C>T	uc001htl.3	-	2	114	c.36G>A	c.(34-36)ATG>ATA	p.M12I	C1orf96_uc009xfc.2_RNA	NM_145257	NP_660300	Q6IQ19	CA096_HUMAN	hypothetical protein LOC126731	12						centrosome					0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.178)				GGTAGCGCTTCATGTACTCGC	0.726													10	32					0	0	0	0
OR14A16	284532	broad.mit.edu	37	1	247978846	247978846	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:247978846C>T	uc001idm.1	-	1	186	c.186G>A	c.(184-186)AAG>AAA	p.K62K		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGATAGATTCTTCAAGAAGA	0.418													23	62					0	0	0	0
UPF2	26019	broad.mit.edu	37	10	12070767	12070767	+	Silent	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:12070767G>C	uc001ila.2	-	2	1596	c.1122C>G	c.(1120-1122)CTC>CTG	p.L374L	UPF2_uc001ilb.2_Silent_p.L374L|UPF2_uc001ilc.2_Silent_p.L374L|UPF2_uc009xiz.1_Silent_p.L374L	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	374	MIF4G 1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				CAGTATTCTGGAGCTCCCTGT	0.373													37	43					0	0	0	0
STAM	8027	broad.mit.edu	37	10	17737124	17737124	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:17737124C>T	uc001ipj.1	+	7	828	c.612C>T	c.(610-612)CTC>CTT	p.L204L	STAM_uc010qcf.1_Silent_p.L93L|STAM_uc009xjw.1_5'UTR	NM_003473	NP_003464	Q92783	STAM1_HUMAN	signal transducing adaptor molecule 1	204					cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|early endosome membrane	SH3/SH2 adaptor activity			large_intestine(1)|ovary(1)	2						CATCCAGTCTCTTAACTAACC	0.388													30	51					0	0	0	0
ARMC4	55130	broad.mit.edu	37	10	28151401	28151401	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:28151401G>A	uc009xky.2	-	18	2859	c.2761C>T	c.(2761-2763)CAT>TAT	p.H921Y	ARMC4_uc010qds.1_Missense_Mutation_p.H446Y|ARMC4_uc010qdt.1_Missense_Mutation_p.H613Y|ARMC4_uc001itz.2_Missense_Mutation_p.H921Y	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	921	ARM 8.						binding			ovary(4)|skin(2)	6						ACAACTCCATGATCTGTGATA	0.303													50	90					0	0	0	0
ARMC4	55130	broad.mit.edu	37	10	28151529	28151529	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:28151529G>T	uc009xky.2	-	18	2731	c.2633C>A	c.(2632-2634)TCC>TAC	p.S878Y	ARMC4_uc010qds.1_Missense_Mutation_p.S403Y|ARMC4_uc010qdt.1_Missense_Mutation_p.S570Y|ARMC4_uc001itz.2_Missense_Mutation_p.S878Y	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	878	ARM 7.						binding			ovary(4)|skin(2)	6						ACCAACAAAGGAACGAACCAT	0.348													15	17					4.7546e-09	4.9011e-09	1	0
ANK3	288	broad.mit.edu	37	10	61822996	61822996	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:61822996C>T	uc001jky.2	-	40	12660	c.12468G>A	c.(12466-12468)TCG>TCA	p.S4156S	ANK3_uc001jkw.2_Silent_p.S677S|ANK3_uc009xpa.2_Silent_p.S677S|ANK3_uc001jkx.2_Silent_p.S721S|ANK3_uc010qih.1_Silent_p.S1544S|ANK3_uc001jkz.3_Silent_p.S1537S|ANK3_uc001jkv.2_Silent_p.S76S	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4156	Death.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTGTCAAGACCGAAGTTAAGG	0.348													12	15					0	0	0	0
MYPN	84665	broad.mit.edu	37	10	69881286	69881286	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:69881286G>T	uc001jnm.3	+	3	276	c.91G>T	c.(91-93)GAG>TAG	p.E31*	MYPN_uc001jnl.1_Nonsense_Mutation_p.E31*|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Nonsense_Mutation_p.E31*|MYPN_uc001jnp.1_Nonsense_Mutation_p.E31*|MYPN_uc009xps.2_Nonsense_Mutation_p.E31*|MYPN_uc009xpt.2_Nonsense_Mutation_p.E31*|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	31	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						GGGAAACAATGAGAGGAGTCG	0.522													13	73					9.31168e-06	9.51861e-06	1	0
HKDC1	80201	broad.mit.edu	37	10	70992626	70992626	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:70992626C>G	uc001jpf.3	+	3	466	c.333C>G	c.(331-333)TTC>TTG	p.F111L	HKDC1_uc010qje.1_5'Flank	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	111					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						AGAGTCAGTTCTACCCAACGC	0.602													75	109					0	0	0	0
SAMD8	142891	broad.mit.edu	37	10	76928341	76928341	+	Silent	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:76928341A>G	uc001jwx.1	+	4	820	c.717A>G	c.(715-717)GTA>GTG	p.V239V	SAMD8_uc001jwy.1_Silent_p.V239V	NM_144660	NP_653261	Q96LT4	SAMD8_HUMAN	sterile alpha motif domain containing 8	239	Helical; (Potential).				sphingomyelin biosynthetic process	integral to membrane					0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					TGGGAACTGTATTCTTGCTTC	0.458													82	136					0	0	0	0
GSTO1	9446	broad.mit.edu	37	10	106019428	106019428	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:106019428G>A	uc001kya.2	+	3	247	c.238G>A	c.(238-240)GGT>AGT	p.G80S		NM_004832	NP_004823	P78417	GSTO1_HUMAN	glutathione-S-transferase omega 1	80	GST N-terminal.				xenobiotic metabolic process	cytosol	glutathione transferase activity|monodehydroascorbate reductase (NADH) activity				0		Colorectal(252;0.102)|Breast(234;0.122)		Epithelial(162;8.07e-10)|all cancers(201;2.72e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0147)	Glutathione(DB00143)	AAACAGTCAGGGTCAGCTGAT	0.468													43	63					0	0	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529368	5529368	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:5529368G>T	uc001may.1	-	2	1507	c.1421C>A	c.(1420-1422)CCT>CAT	p.P474H	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	474										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGCCAGGGAGGCTCAGGGAT	0.552													29	18					3.65163e-15	3.86149e-15	1	0
OR52B2	255725	broad.mit.edu	37	11	6191434	6191434	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:6191434G>A	uc010qzy.1	-	1	123	c.123C>T	c.(121-123)GTC>GTT	p.V41V		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTTTCCCAGGACTGCAGTGA	0.478													34	17					0	0	0	0
APBB1	322	broad.mit.edu	37	11	6422239	6422239	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:6422239A>G	uc001mdb.1	-	11	1752	c.1652T>C	c.(1651-1653)GTA>GCA	p.V551A	APBB1_uc001mcz.1_Missense_Mutation_p.V170A|APBB1_uc001mdd.3_Missense_Mutation_p.V329A|APBB1_uc001mda.2_Missense_Mutation_p.V76A|APBB1_uc001mdc.1_Missense_Mutation_p.V549A|APBB1_uc010rab.1_Missense_Mutation_p.V76A	NM_001164	NP_001155	O00213	APBB1_HUMAN	amyloid beta A4 precursor protein-binding,	551	PID 2.				apoptosis|axonogenesis|cell cycle arrest|histone H4 acetylation|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of thymidylate synthase biosynthetic process|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|signal transduction|transcription, DNA-dependent	cytoplasm|growth cone|lamellipodium|nucleus|plasma membrane|synapse	beta-amyloid binding|chromatin binding|histone binding|proline-rich region binding|transcription factor binding			breast(2)	2		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;6.49e-08)|BRCA - Breast invasive adenocarcinoma(625;0.194)		AGCAACAGGTACATTCCCCAG	0.478													9	216					0	0	0	0
MICAL2	9645	broad.mit.edu	37	11	12248645	12248645	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:12248645C>G	uc001mjz.2	+	15	2250	c.1962C>G	c.(1960-1962)CTC>CTG	p.L654L	MICAL2_uc010rch.1_Silent_p.L654L|MICAL2_uc001mka.2_Silent_p.L654L|MICAL2_uc010rci.1_Silent_p.L654L|MICAL2_uc001mkb.2_Silent_p.L654L|MICAL2_uc001mkc.2_Silent_p.L654L|MICAL2_uc001mkd.2_Silent_p.L483L|MICAL2_uc010rcj.1_Silent_p.L56L	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	654						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		ATAACTATCTCAACCTCACAT	0.443													15	7					0	0	0	0
CSTF3	1479	broad.mit.edu	37	11	33182907	33182907	+	Translation_Start_Site	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:33182907G>C	uc001muh.2	-	1	131	c.-35C>G	c.(-37--33)ATCGA>ATGGA		CSTF3_uc001mui.2_Translation_Start_Site|CSTF3_uc001muj.2_Translation_Start_Site|uc001muk.2_5'Flank	NM_001326	NP_001317	Q12996	CSTF3_HUMAN	cleavage stimulation factor subunit 3 isoform 1						mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding				0						ACTGACCGTCGATGGGAAGCT	0.557											OREG0020867	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	20					0	0	0	0
CREB3L1	90993	broad.mit.edu	37	11	46341831	46341831	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:46341831C>G	uc001ncf.2	+	11	1710	c.1275C>G	c.(1273-1275)CTC>CTG	p.L425L	CREB3L1_uc001ncg.2_Silent_p.L59L	NM_052854	NP_443086	Q96BA8	CR3L1_HUMAN	cAMP responsive element binding protein 3-like	425	Lumenal (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		FUS/CREB3L1(6)	soft_tissue(6)|ovary(2)	8				GBM - Glioblastoma multiforme(35;0.0285)		CCCGAAGCCTCCTATTCTACG	0.557			T	FUS	myxofibrosarcoma								13	29					0	0	0	0
PTPMT1	114971	broad.mit.edu	37	11	47587500	47587500	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:47587500G>C	uc001nfs.3	+	2	410	c.217G>C	c.(217-219)GAG>CAG	p.E73Q	PTPMT1_uc001nfv.3_Missense_Mutation_p.R109P|PTPMT1_uc009ylt.2_Missense_Mutation_p.E73Q|PTPMT1_uc001nfu.3_Missense_Mutation_p.R109P|NDUFS3_uc001nft.3_5'UTR	NM_175732	NP_783859	Q8WUK0	PTPM1_HUMAN	protein tyrosine phosphatase, mitochondrial 1	73					inositol phosphate dephosphorylation	mitochondrial inner membrane	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(1)	1						CACCATGAACGAGGAGTACGA	0.677													14	58					0	0	0	0
OR8H1	219469	broad.mit.edu	37	11	56058397	56058397	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:56058397T>G	uc010rje.1	-	1	142	c.142A>C	c.(142-144)ATA>CTA	p.I48L		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	48	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AGGCGGATTATCAATATCATC	0.423													75	201					0	0	0	0
UBXN1	51035	broad.mit.edu	37	11	62445293	62445293	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:62445293C>T	uc001nul.1	-	6	626	c.494G>A	c.(493-495)AGA>AAA	p.R165K	UBXN1_uc001nuj.2_Missense_Mutation_p.R165K|UBXN1_uc001num.1_Missense_Mutation_p.R161K|UBXN1_uc001nuk.2_Missense_Mutation_p.R130K|UBXN1_uc010rme.1_Missense_Mutation_p.R165K	NM_015853	NP_056937	Q04323	UBXN1_HUMAN	UBX domain protein 1	165	Potential.|Interaction with BRCA1.				negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process	cytoplasm	ATPase binding|K6-linked polyubiquitin binding				0						GATCTTTTCTCTAACTCTTTG	0.433													50	105					0	0	0	0
RASGRP2	10235	broad.mit.edu	37	11	64507521	64507521	+	Silent	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:64507521G>T	uc009ypu.2	-	6	713	c.486C>A	c.(484-486)CTC>CTA	p.L162L	RASGRP2_uc001oat.2_Silent_p.L64L|RASGRP2_uc001oau.2_Silent_p.L17L|RASGRP2_uc009ypv.2_Silent_p.L162L|RASGRP2_uc009ypw.2_Silent_p.L162L	NM_001098671	NP_001092141	Q7LDG7	GRP2_HUMAN	RAS guanyl releasing protein 2	162	Ras-GEF.				platelet activation|Ras protein signal transduction|regulation of cell growth|regulation of small GTPase mediated signal transduction	cell junction|cytosol|ruffle membrane|synapse|synaptosome	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity				0						CCAAGTAGGTGAGATGCTCCG	0.607													12	82					5.16669e-11	5.41692e-11	1	0
SF1	7536	broad.mit.edu	37	11	64534668	64534668	+	Silent	SNP	T	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:64534668T>C	uc001obb.1	-	11	1775	c.1398A>G	c.(1396-1398)GGA>GGG	p.G466G	SF1_uc010rnm.1_Silent_p.G158G|SF1_uc010rnn.1_Silent_p.G440G|SF1_uc001oaz.1_Silent_p.G591G|SF1_uc001oba.1_Silent_p.G466G|SF1_uc001obc.1_Silent_p.G466G|SF1_uc001obd.1_Missense_Mutation_p.K468E|SF1_uc001obe.1_Missense_Mutation_p.K353E|SF1_uc010rno.1_Silent_p.G351G	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	466	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						CATTACCTTTTCCTTGATGCA	0.562													40	61					0	0	0	0
MALAT1	378938	broad.mit.edu	37	11	65268712	65268712	+	RNA	SNP	T	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:65268712T>G	uc010roh.1	+	1		c.3480T>G			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TTTGTGGGGGTGGGGGCAAAA	0.393													10	46					0	0	0	0
SHANK2	22941	broad.mit.edu	37	11	70332212	70332212	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:70332212G>T	uc001oqc.2	-	21	4264	c.4186C>A	c.(4186-4188)CTG>ATG	p.L1396M	SHANK2_uc010rqn.1_Missense_Mutation_p.L808M|SHANK2_uc001opz.2_Missense_Mutation_p.L801M|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1017					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACGGATGCCAGAGGGGGAGGA	0.582													34	457					4.92203e-23	5.25016e-23	1	0
DLG2	1740	broad.mit.edu	37	11	84245714	84245714	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:84245714C>G	uc001paj.2	-	2	406	c.103G>C	c.(103-105)GAA>CAA	p.E35Q	DLG2_uc010rsz.1_Missense_Mutation_p.E35Q|DLG2_uc010rta.1_Missense_Mutation_p.E35Q|DLG2_uc001pak.2_Missense_Mutation_p.E140Q|DLG2_uc001pal.1_Missense_Mutation_p.E35Q	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	35						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding	p.E35E(1)		ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				CCTCTTACTTCGTGGGTTAGT	0.398													47	83					0	0	0	0
BIRC2	329	broad.mit.edu	37	11	102233700	102233700	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:102233700G>C	uc001pgy.2	+	4	2468	c.1069G>C	c.(1069-1071)GAA>CAA	p.E357Q	BIRC2_uc010ruq.1_Missense_Mutation_p.E308Q|BIRC2_uc010rur.1_Missense_Mutation_p.E357Q	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	357					cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		TCATCTTCTTGAACAGGTAAA	0.224													8	184					0	0	0	0
MMP27	64066	broad.mit.edu	37	11	102562560	102562560	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:102562560C>G	uc001phd.1	-	10	1502	c.1479G>C	c.(1477-1479)AAG>AAC	p.K493N		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	493					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		AGCTTAAACTCTTATGATACA	0.299													32	585					0	0	0	0
MMP8	4317	broad.mit.edu	37	11	102592421	102592421	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:102592421C>G	uc001phe.2	-	3	519	c.420G>C	c.(418-420)TGG>TGC	p.W140C	MMP8_uc010rut.1_Missense_Mutation_p.W75C|MMP8_uc010ruu.1_Missense_Mutation_p.W117C	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein	140					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		ATGCAACACTCCAGAGTTCAA	0.448													21	350					0	0	0	0
MMP1	4312	broad.mit.edu	37	11	102666324	102666324	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:102666324G>A	uc001phi.2	-	5	783	c.640C>T	c.(640-642)CGT>TGT	p.R214C	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.R148C	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	214	Metalloprotease.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		GCTGCAACACGATGTAAGTTG	0.368													15	168					0	0	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128844701	128844701	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr11:128844701C>T	uc009zcp.2	-	20	2349	c.2349G>A	c.(2347-2349)TTG>TTA	p.L783L	ARHGAP32_uc009zcq.1_Silent_p.L743L|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Silent_p.L434L	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	783					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CTGGTGGGCTCAAGTCAACAT	0.483													25	10					0	0	0	0
LRP6	4040	broad.mit.edu	37	12	12302048	12302048	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:12302048G>T	uc001rah.3	-	14	3176	c.3034C>A	c.(3034-3036)CTG>ATG	p.L1012M	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.L1012M	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1012	LDL-receptor class B 16.|Extracellular (Potential).|Beta-propeller 4.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TGTATTTCCAGGTTCTGACTC	0.428													94	147					1.41219e-46	1.51512e-46	1	0
KIAA1467	57613	broad.mit.edu	37	12	13221564	13221564	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:13221564C>T	uc001rbi.2	+	9	1310	c.1287C>T	c.(1285-1287)AGC>AGT	p.S429S	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	429						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		TTATTTGCAGCCAGCCTACTC	0.418													39	72					0	0	0	0
IRAK3	11213	broad.mit.edu	37	12	66603284	66603284	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:66603284C>T	uc001sth.2	+	3	467	c.365C>T	c.(364-366)CCA>CTA	p.P122L	IRAK3_uc010ssy.1_Missense_Mutation_p.P61L	NM_007199	NP_009130	Q9Y616	IRAK3_HUMAN	interleukin-1 receptor-associated kinase 3	122					interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|negative regulation of innate immune response|negative regulation of interleukin-12 production|negative regulation of interleukin-6 production|negative regulation of macrophage cytokine production|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein catabolic process|negative regulation of protein complex disassembly|negative regulation of toll-like receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of macrophage tolerance induction|positive regulation of NF-kappaB transcription factor activity|response to exogenous dsRNA|response to lipopolysaccharide|response to peptidoglycan	cytoplasm|nucleus	ATP binding|magnesium ion binding|protein heterodimerization activity|protein homodimerization activity|protein serine/threonine kinase activity			lung(3)|ovary(2)|breast(2)|central_nervous_system(1)	8				GBM - Glioblastoma multiforme(28;0.0203)		GGTGGATTTCCAAATATATTA	0.353													21	53					0	0	0	0
KCNC2	3747	broad.mit.edu	37	12	75601539	75601539	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:75601539G>A	uc001sxg.1	-	2	769	c.225C>T	c.(223-225)GGC>GGT	p.G75G	KCNC2_uc009zry.2_Silent_p.G75G|KCNC2_uc001sxe.2_Silent_p.G75G|KCNC2_uc001sxf.2_Silent_p.G75G|KCNC2_uc010stw.1_Silent_p.G75G	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	75	Gly/Pro-rich (insert).|Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						CGAAGCAGCCGCCTGGCCCGg	0.537													7	1					0	0	0	0
C12orf63	374467	broad.mit.edu	37	12	97102560	97102560	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:97102560C>A	uc001tet.1	+	15	2056	c.1978C>A	c.(1978-1980)CCA>ACA	p.P660T		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	660										skin(6)|ovary(1)	7						CAAGAGCAAACCAAACCTACC	0.348													20	41					1.01871e-10	1.06502e-10	1	0
RNFT2	84900	broad.mit.edu	37	12	117217096	117217096	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:117217096C>T	uc009zwn.2	+	7	1058	c.825C>T	c.(823-825)ATC>ATT	p.I275I	RNFT2_uc001twb.3_Silent_p.I275I|RNFT2_uc001twa.3_Silent_p.I185I|RNFT2_uc001twc.3_Silent_p.I23I	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	275	Helical; (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		ACATCACCATCGCCCTCAAGT	0.552													60	81					0	0	0	0
ANAPC5	51433	broad.mit.edu	37	12	121756175	121756175	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:121756175C>T	uc001uag.2	-	15	1920	c.1798G>A	c.(1798-1800)GCG>ACG	p.A600T	ANAPC5_uc010szu.1_Missense_Mutation_p.A266T|ANAPC5_uc001uae.2_Missense_Mutation_p.A164T|ANAPC5_uc010szv.1_Missense_Mutation_p.A202T|ANAPC5_uc001uaf.2_RNA|ANAPC5_uc001uah.2_Missense_Mutation_p.A488T|ANAPC5_uc001uai.1_Intron	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	600	TPR 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					ATGGGCAGCGCGATGGTAGGG	0.552													33	47					0	0	0	0
DDX51	317781	broad.mit.edu	37	12	132627321	132627321	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:132627321C>G	uc001ujy.3	-	3	661	c.622G>C	c.(622-624)GAC>CAC	p.D208H	NOC4L_uc001ujz.1_5'Flank	NM_175066	NP_778236	Q8N8A6	DDX51_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	208					rRNA processing	nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			lung(1)|pancreas(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.59e-08)|Epithelial(86;3.62e-07)|all cancers(50;2.13e-05)		TTCTGCAGGTCAGGATGGACG	0.617													48	93					0	0	0	0
GOLGA3	2802	broad.mit.edu	37	12	133350895	133350895	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:133350895C>T	uc001ukz.1	-	23	4714	c.4155G>A	c.(4153-4155)CCG>CCA	p.P1385P		NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	1385	Potential.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		CCTCGCCTTTCGGCTCCTTTC	0.617													28	49					0	0	0	0
RNF31	55072	broad.mit.edu	37	14	24617533	24617533	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:24617533G>T	uc001wmn.1	+	3	655	c.406G>T	c.(406-408)GAA>TAA	p.E136*	PSME2_uc001wmj.2_5'Flank|PSME2_uc001wmk.2_5'Flank|RNF31_uc001wml.1_5'UTR|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_5'UTR|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	136	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		GAGCTTCCCCGAAGGGCAGGA	0.567													14	38					7.93312e-07	8.132e-07	1	0
MDGA2	161357	broad.mit.edu	37	14	47426688	47426688	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:47426688G>A	uc001wwj.3	-	9	1967	c.1771C>T	c.(1771-1773)CAG>TAG	p.Q591*	MDGA2_uc001wwi.3_Nonsense_Mutation_p.Q362*|MDGA2_uc010ani.2_Nonsense_Mutation_p.Q151*	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	591	Ig-like 6.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GTGTATTCCTGAGAGTCAAAT	0.448													39	67					0	0	0	0
SYNE2	23224	broad.mit.edu	37	14	64476717	64476717	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:64476717A>T	uc001xgm.2	+	32	4841	c.4611A>T	c.(4609-4611)TTA>TTT	p.L1537F	SYNE2_uc001xgl.2_Missense_Mutation_p.L1537F	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	1537	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGGAGCTCTTAAAACAATATC	0.353													18	32					0	0	0	0
HSPA2	3306	broad.mit.edu	37	14	65008483	65008483	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:65008483G>C	uc001xhj.2	+	2	992	c.916G>C	c.(916-918)GAG>CAG	p.E306Q	HSPA2_uc001xhk.3_Missense_Mutation_p.E306Q	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	306					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		CGCCCGCTTCGAGGAGCTCAA	0.652													10	19					0	0	0	0
TSHR	7253	broad.mit.edu	37	14	81610641	81610641	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:81610641C>T	uc001xvd.1	+	10	2395	c.2239C>T	c.(2239-2241)CTA>TTA	p.L747L		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	747	Cytoplasmic (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	AAACTCCCATCTAACCCCAAA	0.408			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						38	67					0	0	0	0
ZC3H14	79882	broad.mit.edu	37	14	89039315	89039315	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:89039315G>A	uc001xww.2	+	6	1050	c.825G>A	c.(823-825)CCG>CCA	p.P275P	ZC3H14_uc010twd.1_Silent_p.P275P|ZC3H14_uc010twe.1_Silent_p.P275P|ZC3H14_uc001xwx.2_Silent_p.P275P|ZC3H14_uc010twf.1_Silent_p.P120P|ZC3H14_uc001xwy.2_Silent_p.P241P|ZC3H14_uc010twg.1_Silent_p.P120P|ZC3H14_uc001xxa.2_5'Flank	NM_024824	NP_079100	Q6PJT7	ZC3HE_HUMAN	zinc finger CCCH-type containing 14 isoform 1	275						cytoplasm|cytoplasm|nuclear speck	protein binding|RNA binding|zinc ion binding			ovary(2)|skin(1)	3						CGTATAGTCCGTTCTTTAGAA	0.388													4	80					0	0	0	0
EML5	161436	broad.mit.edu	37	14	89131807	89131807	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:89131807C>T	uc001xxg.2	-	23	3337	c.3151G>A	c.(3151-3153)GAT>AAT	p.D1051N	EML5_uc001xxf.2_5'UTR|EML5_uc001xxh.1_Missense_Mutation_p.D190N	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1051	WD 17.					cytoplasm|microtubule				ovary(3)	3						GCTTTACCATCAGGAGAAAAA	0.348													33	57					0	0	0	0
EML5	161436	broad.mit.edu	37	14	89192964	89192964	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:89192964G>C	uc001xxg.2	-	9	1294	c.1108C>G	c.(1108-1110)CGT>GGT	p.R370G		NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	370						cytoplasm|microtubule				ovary(3)	3						GCTGCACAACGAATTGGTTCT	0.368													3	14					0	0	0	0
MOAP1	64112	broad.mit.edu	37	14	93650551	93650551	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:93650551T>C	uc001ybj.2	-	3	407	c.37A>G	c.(37-39)ATG>GTG	p.M13V	C14orf109_uc001ybk.3_5'Flank|C14orf109_uc010auo.2_5'Flank	NM_022151	NP_071434	Q96BY2	MOAP1_HUMAN	modulator of apoptosis 1	13					activation of caspase activity|apoptotic nuclear change	cytoplasm	protein homodimerization activity			skin(2)|ovary(1)	3		all_cancers(154;0.00528)|Acute lymphoblastic leukemia(33;0.0497)|all_epithelial(191;0.125)|all_neural(303;0.13)		Epithelial(152;0.178)|all cancers(159;0.2)|COAD - Colon adenocarcinoma(157;0.204)		ttcatgtccatccccctgcac	0.085													5	169					0	0	0	0
JAG2	3714	broad.mit.edu	37	14	105609974	105609974	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:105609974G>C	uc001yqg.2	-	25	3490	c.3086C>G	c.(3085-3087)TCC>TGC	p.S1029C	JAG2_uc010axf.2_5'UTR|JAG2_uc001yqf.2_Missense_Mutation_p.S433C|JAG2_uc001yqh.2_Missense_Mutation_p.S991C	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	1029	Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		AGGGCTGAAGGACTGCGGCAA	0.682													5	60					0	0	0	0
CYFIP1	23191	broad.mit.edu	37	15	22997806	22997806	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:22997806G>C	uc001yus.2	+	27	3156	c.3052G>C	c.(3052-3054)GAA>CAA	p.E1018Q	CYFIP1_uc001yut.2_Missense_Mutation_p.E1018Q|CYFIP1_uc001yuu.2_Missense_Mutation_p.E587Q|CYFIP1_uc001yuv.2_Missense_Mutation_p.E212Q	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	1018					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		GTCTTTAGAAGAAGTGTGTGA	0.527													98	170					0	0	0	0
OCA2	4948	broad.mit.edu	37	15	28211914	28211914	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:28211914G>A	uc001zbh.3	-	15	1668	c.1558C>T	c.(1558-1560)CTC>TTC	p.L520F	OCA2_uc010ayv.2_Missense_Mutation_p.L496F	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	520	Helical; (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		CAGACCAGGAGAACAAGGCAA	0.438									Oculocutaneous_Albinism				13	23					0	0	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40268942	40268942	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:40268942G>A	uc001zkm.1	+	12	2196	c.2146G>A	c.(2146-2148)GAG>AAG	p.E716K	EIF2AK4_uc010bbj.1_Missense_Mutation_p.E445K	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	716	Protein kinase 2.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		CACTTCGGGCGAGCGCTCGGC	0.716													36	62					0	0	0	0
ZFP106	64397	broad.mit.edu	37	15	42743329	42743329	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:42743329G>A	uc001zpw.2	-	2	1407	c.1072C>T	c.(1072-1074)CTG>TTG	p.L358L	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Silent_p.L141L|ZFP106_uc001zpy.1_Silent_p.L381L	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	358						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TGTAAATCCAGAGTCTTCTGA	0.438													49	63					0	0	0	0
ZFP106	64397	broad.mit.edu	37	15	42743338	42743338	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:42743338G>C	uc001zpw.2	-	2	1398	c.1063C>G	c.(1063-1065)CAG>GAG	p.Q355E	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Missense_Mutation_p.Q138E|ZFP106_uc001zpy.1_Missense_Mutation_p.Q378E	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	355						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		AGAGTCTTCTGAGAAGGGTAA	0.448													49	60					0	0	0	0
ZFP106	64397	broad.mit.edu	37	15	42743875	42743875	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:42743875G>C	uc001zpw.2	-	2	861	c.526C>G	c.(526-528)CAC>GAC	p.H176D	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_5'UTR|ZFP106_uc001zpy.1_Missense_Mutation_p.H199D	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	176						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		CTATGGTTGTGAAACCAAGTC	0.468													34	77					0	0	0	0
SPG11	80208	broad.mit.edu	37	15	44856881	44856881	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:44856881C>T	uc001ztx.2	-	39	7046	c.7015G>A	c.(7015-7017)GAG>AAG	p.E2339K	SPG11_uc010bdw.2_Missense_Mutation_p.E469K|SPG11_uc010ueh.1_Missense_Mutation_p.E2226K|SPG11_uc010uei.1_Intron	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	2339	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		TCGTAGGCCTCAGCCACAATA	0.373													27	38					0	0	0	0
AP4E1	23431	broad.mit.edu	37	15	51233943	51233943	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:51233943G>C	uc001zyx.1	+	10	1177	c.1147G>C	c.(1147-1149)GAT>CAT	p.D383H	AP4E1_uc010ufi.1_3'UTR|AP4E1_uc010ufj.1_RNA|AP4E1_uc010ufk.1_RNA|LOC100132724_uc010ufl.1_5'Flank	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	383					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		TGAATGTTTAGATCATCCTGA	0.333													14	38					0	0	0	0
VPS13C	54832	broad.mit.edu	37	15	62161820	62161820	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr15:62161820C>T	uc002agz.2	-	80	10701	c.10627G>A	c.(10627-10629)GCC>ACC	p.A3543T	VPS13C_uc002aha.2_Missense_Mutation_p.A3500T|VPS13C_uc002ahb.1_Missense_Mutation_p.A3543T|VPS13C_uc002ahc.1_Missense_Mutation_p.A3500T	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3543					protein localization					ovary(2)	2						TCCTTTTTGGCACCTTCAGAA	0.443													4	132					0	0	0	0
HBZ	3050	broad.mit.edu	37	16	202962	202962	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:202962C>T	uc002cft.1	+	1	109	c.54C>T	c.(52-54)ATC>ATT	p.I18I		NM_005332	NP_005323	P02008	HBAZ_HUMAN	hemoglobin, zeta	18						hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		all_cancers(16;4.28e-07)|all_epithelial(16;2.09e-06)|Hepatocellular(16;0.000325)|Lung NSC(18;0.0104)|all_lung(18;0.0239)				GGGCCAAGATCTCCACGCAGG	0.622													17	36					0	0	0	0
ITFG3	83986	broad.mit.edu	37	16	312520	312520	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:312520C>G	uc002cgf.2	+	8	1134	c.939C>G	c.(937-939)CTC>CTG	p.L313L	ITFG3_uc010bqr.2_RNA|ITFG3_uc002cgg.2_Silent_p.L313L|ITFG3_uc010uud.1_RNA|ITFG3_uc002cgh.2_Silent_p.L313L	NM_032039	NP_114428	Q9H0X4	ITFG3_HUMAN	integrin alpha FG-GAP repeat containing 3	313	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1		all_cancers(16;0.000129)|all_epithelial(16;0.000206)|Hepatocellular(16;0.00264)|Lung NSC(18;0.0626)|all_lung(18;0.13)				AGAGCATGCTCAATGCCACCA	0.652													25	38					0	0	0	0
BAIAP3	8938	broad.mit.edu	37	16	1388988	1388988	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:1388988G>C	uc002clk.1	+	3	322	c.322G>C	c.(322-324)GAG>CAG	p.E108Q	BAIAP3_uc002clj.2_Missense_Mutation_p.E73Q|BAIAP3_uc010uuz.1_Missense_Mutation_p.E73Q|BAIAP3_uc010uva.1_Missense_Mutation_p.E73Q|BAIAP3_uc010uvb.1_Missense_Mutation_p.E108Q|BAIAP3_uc010uvc.1_Missense_Mutation_p.E73Q	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	108					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				GCCGTGCCTCGAGGTAAGGGT	0.667													40	66					0	0	0	0
HS3ST6	64711	broad.mit.edu	37	16	1961639	1961639	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:1961639G>A	uc002cnf.2	-	2	888	c.888C>T	c.(886-888)TTC>TTT	p.F296F		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	296											0						ACCTGCGGTTGAAGGGCCGGT	0.701													9	5					0	0	0	0
TNFRSF12A	51330	broad.mit.edu	37	16	3071626	3071626	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:3071626C>T	uc002csv.3	+	3	356	c.270C>T	c.(268-270)TTC>TTT	p.F90F	TNFRSF12A_uc002csw.3_Silent_p.F55F|THOC6_uc002ctb.2_5'Flank|THOC6_uc002ctd.2_5'Flank|THOC6_uc002ctc.2_5'Flank|THOC6_uc002cta.2_5'Flank	NM_016639	NP_057723	Q9NP84	TNR12_HUMAN	tumor necrosis factor receptor superfamily,	90	Helical; (Potential).				angiogenesis|apoptosis	integral to membrane	receptor activity				0						GCCTGACCTTCGTGCTGGGGC	0.652											OREG0023566	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	41					0	0	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857426	9857426	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:9857426G>A	uc002czo.3	-	13	4523	c.3975C>T	c.(3973-3975)TAC>TAT	p.Y1325Y	GRIN2A_uc010uym.1_Silent_p.Y1325Y|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1325	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACAGGCTGCCGTAAAAATTTC	0.527													56	86					0	0	0	0
ACSM1	116285	broad.mit.edu	37	16	20696551	20696551	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:20696551C>G	uc002dhm.1	-	2	435	c.367G>C	c.(367-369)GAG>CAG	p.E123Q	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.E123Q	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	123					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						AGCCACCACTCAGGAACTCGA	0.582													22	74					0	0	0	0
HIRIP3	8479	broad.mit.edu	37	16	30005773	30005773	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:30005773G>A	uc002dve.2	-	4	1154	c.693C>T	c.(691-693)ATC>ATT	p.I231I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvg.1_5'Flank|INO80E_uc002dvh.1_5'Flank|INO80E_uc002dvi.1_5'Flank|INO80E_uc002dvj.1_5'Flank|INO80E_uc002dvk.1_5'Flank|HIRIP3_uc002dvf.2_Intron	NM_003609	NP_003600	Q9BW71	HIRP3_HUMAN	HIRA interacting protein 3	231	Glu-rich.				chromatin assembly or disassembly	nucleus	protein binding			central_nervous_system(1)	1						TCTGGGCTAGGATCTCCTCTT	0.368													6	230					0	0	0	0
PRSS36	146547	broad.mit.edu	37	16	31153248	31153248	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:31153248C>G	uc002ebd.2	-	11	1614	c.1555G>C	c.(1555-1557)GAG>CAG	p.E519Q	PRSS36_uc010vff.1_Missense_Mutation_p.E294Q|PRSS36_uc010vfg.1_Missense_Mutation_p.E514Q|PRSS36_uc010vfh.1_Missense_Mutation_p.E519Q	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	519	Peptidase S1 2.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						CAGGTCCCCTCCTCCTGGCAC	0.557													46	89					0	0	0	0
CHD9	80205	broad.mit.edu	37	16	53260306	53260306	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:53260306G>C	uc002ehb.2	+	4	2089	c.1925G>C	c.(1924-1926)AGA>ACA	p.R642T	CHD9_uc002egy.2_Missense_Mutation_p.R642T|CHD9_uc002egz.1_Missense_Mutation_p.R642T|CHD9_uc002eha.1_Missense_Mutation_p.R642T|CHD9_uc002ehc.2_Missense_Mutation_p.R642T|CHD9_uc002ehd.2_Missense_Mutation_p.R168T	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	642	Lys-rich.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				CAAATTAAAAGAAAAAAATAC	0.289													16	24					0	0	0	0
FTO	79068	broad.mit.edu	37	16	53844097	53844097	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:53844097C>G	uc002ehr.2	+	2	313	c.91C>G	c.(91-93)CTG>GTG	p.L31V	FTO_uc010vha.1_Translation_Start_Site	NM_001080432	NP_001073901	Q9C0B1	FTO_HUMAN	fat mass and obesity associated	31					DNA dealkylation involved in DNA repair|oxidative single-stranded DNA demethylation|oxidative single-stranded RNA demethylation|RNA repair	nucleus	DNA-N1-methyladenine dioxygenase activity|ferrous iron binding|oxidative DNA demethylase activity|oxidative RNA demethylase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCTCCCTTATCTGACCCCCAA	0.264													21	43					0	0	0	0
LRRC36	55282	broad.mit.edu	37	16	67405001	67405001	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:67405001G>A	uc002esv.2	+	9	1369	c.1350G>A	c.(1348-1350)CTG>CTA	p.L450L	LRRC36_uc002esw.2_RNA|LRRC36_uc010ceh.2_Silent_p.L182L|LRRC36_uc002esx.2_Silent_p.L329L|LRRC36_uc010vjk.1_Silent_p.L329L|LRRC36_uc010vjl.1_5'UTR|LRRC36_uc002esy.2_Intron	NM_018296	NP_060766	Q1X8D7	LRC36_HUMAN	leucine rich repeat containing 36 isoform 1	450											0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0669)|Epithelial(162;0.161)		TGCGGACACTGCTGTTGTCTC	0.468													44	70					0	0	0	0
GFOD2	81577	broad.mit.edu	37	16	67709325	67709325	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:67709325C>G	uc002eub.2	-	3	1186	c.891G>C	c.(889-891)CAG>CAC	p.Q297H	GFOD2_uc002eua.1_RNA|GFOD2_uc002euc.2_Missense_Mutation_p.Q192H	NM_030819	NP_110446	Q3B7J2	GFOD2_HUMAN	glucose-fructose oxidoreductase domain	297						proteinaceous extracellular matrix	binding|oxidoreductase activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0151)|Epithelial(162;0.0505)|all cancers(182;0.242)		GCGGGACATCCTGGGGCCCCT	0.667													5	74					0	0	0	0
NRN1L	123904	broad.mit.edu	37	16	67920047	67920047	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:67920047C>G	uc002euu.2	+	3	409	c.383C>G	c.(382-384)TCC>TGC	p.S128C	EDC4_uc002eut.1_3'UTR	NM_198443	NP_940845	Q496H8	NRN1L_HUMAN	neuritin 1-like precursor	128						anchored to membrane|plasma membrane				central_nervous_system(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00415)|Epithelial(162;0.0182)|all cancers(182;0.119)		GGCACAGGCTCCGAAACCAAC	0.667													4	17					0	0	0	0
DPEP2	64174	broad.mit.edu	37	16	68025794	68025794	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:68025794G>C	uc010cey.2	-	4	773	c.609C>G	c.(607-609)TTC>TTG	p.F203L	DPEP2_uc002evd.3_Missense_Mutation_p.F203L|DPEP2_uc002eve.2_Missense_Mutation_p.F203L|DPEP2_uc002evf.2_RNA|DPEP2_uc002evg.2_3'UTR	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	203					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		CCAGCATGTAGAAGGTAGGTA	0.592													28	58					0	0	0	0
DUS2L	54920	broad.mit.edu	37	16	68109341	68109341	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:68109341C>T	uc002evi.2	+	14	1165	c.1016C>T	c.(1015-1017)TCA>TTA	p.S339L	DUS2L_uc002evj.2_Missense_Mutation_p.S339L|DUS2L_uc010vkk.1_Missense_Mutation_p.S304L|DUS2L_uc010cez.2_Missense_Mutation_p.S252L	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	339					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		GCCAAGACTTCAGAGCAGACA	0.567													20	32					0	0	0	0
PLA2G15	23659	broad.mit.edu	37	16	68293433	68293433	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:68293433G>T	uc002evr.2	+	6	1195	c.1112G>T	c.(1111-1113)TGC>TTC	p.C371F	PLA2G15_uc010vld.1_3'UTR|PLA2G15_uc010vle.1_Missense_Mutation_p.C277F|PLA2G15_uc010vlf.1_Missense_Mutation_p.C171F|PLA2G15_uc002evs.2_Missense_Mutation_p.C192F	NM_012320	NP_036452	Q8NCC3	PAG15_HUMAN	lysophospholipase 3 (lysosomal phospholipase A2)	371					fatty acid catabolic process	extracellular region|lysosome	lysophospholipase activity|phosphatidylcholine-sterol O-acyltransferase activity|phospholipid binding			ovary(1)	1						GCCCTGCAGTGCCAGGCCTGG	0.587													21	40					2.89027e-11	3.03891e-11	1	0
ZFHX3	463	broad.mit.edu	37	16	72993190	72993190	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:72993190G>C	uc002fck.2	-	2	1528	c.855C>G	c.(853-855)TTC>TTG	p.F285L	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	285	C2H2-type 1.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GTTTGCACAAGAAACACATCA	0.498													36	80					0	0	0	0
LRRC50	123872	broad.mit.edu	37	16	84209596	84209596	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:84209596G>A	uc002fhl.3	+	11	1937	c.1756G>A	c.(1756-1758)GAA>AAA	p.E586K	LRRC50_uc010vnw.1_Missense_Mutation_p.E350K	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	586					axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						CAGTGACCCTGAACTGGACTA	0.453									Kartagener_syndrome		OREG0023983	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	69					0	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89349254	89349254	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:89349254C>G	uc002fmx.1	-	9	4157	c.3696G>C	c.(3694-3696)AAG>AAC	p.K1232N	ANKRD11_uc002fmy.1_Missense_Mutation_p.K1232N|ANKRD11_uc002fnc.1_Missense_Mutation_p.K1232N|ANKRD11_uc002fnb.1_Missense_Mutation_p.K1189N	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1232	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GTTTATTTTTCTTATCTTGCG	0.443													58	57					0	0	0	0
ANKRD11	29123	broad.mit.edu	37	16	89349405	89349405	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr16:89349405C>T	uc002fmx.1	-	9	4006	c.3545G>A	c.(3544-3546)AGA>AAA	p.R1182K	ANKRD11_uc002fmy.1_Missense_Mutation_p.R1182K|ANKRD11_uc002fnc.1_Missense_Mutation_p.R1182K|ANKRD11_uc002fnb.1_Missense_Mutation_p.R1139K	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1182	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TCTCCTGTCTCTGGGCTCCTT	0.542													58	79					0	0	0	0
WDR81	124997	broad.mit.edu	37	17	1636853	1636853	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:1636853G>C	uc002fti.2	+	7	1102	c.841G>C	c.(841-843)GAG>CAG	p.E281Q	WDR81_uc002fth.2_Missense_Mutation_p.E457Q|WDR81_uc010vqp.1_Missense_Mutation_p.E305Q|WDR81_uc002ftj.2_Missense_Mutation_p.E1508Q|WDR81_uc010vqq.1_Missense_Mutation_p.E139Q	NM_001163811	NP_001157283	Q562E7	WDR81_HUMAN	WD repeat domain 81 isoform 4	281										skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CCCCAACCACGAGCTGGTTGG	0.632													75	122					0	0	0	0
OR1G1	8390	broad.mit.edu	37	17	3030534	3030534	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:3030534G>T	uc002fvc.1	-	1	312	c.312C>A	c.(310-312)TTC>TTA	p.F104L		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CAAATAACATGAAAAAATACA	0.483													10	82					0.000442599	0.000449935	1	0
OR1A2	26189	broad.mit.edu	37	17	3101343	3101343	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:3101343C>T	uc002fvd.1	+	1	531	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TAGCCAATTTCTACTGTGACA	0.473													57	93					0	0	0	0
TRPV1	7442	broad.mit.edu	37	17	3495380	3495380	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:3495380C>G	uc010vrr.1	-	1	792	c.265G>C	c.(265-267)GAC>CAC	p.D89H	TRPV1_uc010vro.1_Missense_Mutation_p.D89H|TRPV1_uc010vrp.1_Missense_Mutation_p.D89H|TRPV1_uc010vrq.1_Missense_Mutation_p.E63D|TRPV1_uc010vrs.1_Missense_Mutation_p.D89H|TRPV1_uc010vrt.1_Missense_Mutation_p.D89H|TRPV1_uc010vru.1_Missense_Mutation_p.D89H	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	89	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	GTGGGGCCGTCTCCTGGCCTC	0.657													12	43					0	0	0	0
TRPV1	7442	broad.mit.edu	37	17	3495440	3495440	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:3495440C>G	uc010vrr.1	-	1	732	c.205G>C	c.(205-207)GAG>CAG	p.E69Q	TRPV1_uc010vro.1_Missense_Mutation_p.E69Q|TRPV1_uc010vrp.1_Missense_Mutation_p.E69Q|TRPV1_uc010vrq.1_Silent_p.V43V|TRPV1_uc010vrs.1_Missense_Mutation_p.E69Q|TRPV1_uc010vrt.1_Missense_Mutation_p.E69Q|TRPV1_uc010vru.1_Missense_Mutation_p.E69Q	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	69	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	GAGTCCAGCTCACCTTCCTCG	0.652													13	25					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:7578212G>A	uc002gim.2	-	6	831	c.637C>T	c.(637-639)CGA>TGA	p.R213*	TP53_uc002gig.1_Nonsense_Mutation_p.R213*|TP53_uc002gih.2_Nonsense_Mutation_p.R213*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.R81*|TP53_uc010cng.1_Nonsense_Mutation_p.R81*|TP53_uc002gii.1_Nonsense_Mutation_p.R81*|TP53_uc010cnh.1_Nonsense_Mutation_p.R213*|TP53_uc010cni.1_Nonsense_Mutation_p.R213*|TP53_uc002gij.2_Nonsense_Mutation_p.R213*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.R120*|TP53_uc002gio.2_Nonsense_Mutation_p.R81*|TP53_uc010vug.1_Nonsense_Mutation_p.R174*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	213	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in sporadic cancers; somatic mutation).|R -> W (in sporadic cancers; somatic mutation).|R -> Q (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R213*(186)|p.R213L(25)|p.R213Q(22)|p.R213fs*34(10)|p.0?(7)|p.R213P(5)|p.R81*(2)|p.R120*(2)|p.R213G(2)|p.K164_P219del(1)|p.D208_V216delDRNTFRHSV(1)|p.D207_R213delDDRNTFR(1)|p.T211_S215delTFRHS(1)|p.R213*33(1)|p.D208fs*1(1)|p.R213>L(1)|p.R209_R213delRNTFR(1)|p.R213fs*2(1)|p.T211fs*28(1)|p.R213_S215>X(1)|p.D207_V216del10(1)|p.R213R(1)|p.R213fs*32(1)|p.R209fs*6(1)|p.R213W(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ACACTATGTCGAAAAGTGTTT	0.532		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			36	8					0	0	0	0
DNAH2	146754	broad.mit.edu	37	17	7623114	7623114	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:7623114G>A	uc002giu.1	+	1	76	c.62G>A	c.(61-63)TGG>TAG	p.W21*	DNAH2_uc002git.2_Nonsense_Mutation_p.W21*|DNAH2_uc010vuk.1_Nonsense_Mutation_p.W21*	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	21	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CAGGCAAGCTGGTCAGGGCGG	0.617													18	24					0	0	0	0
TNFAIP1	7126	broad.mit.edu	37	17	26666552	26666552	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:26666552C>T	uc002hax.1	+	2	24	c.5C>T	c.(4-6)TCG>TTG	p.S2L	TNFAIP1_uc002hay.2_Missense_Mutation_p.S2L|TNFAIP1_uc010waf.1_Intron	NM_021137	NP_066960	Q13829	BACD2_HUMAN	tumor necrosis factor, alpha-induced protein 1	2					apoptosis|cell migration|DNA replication|embryo development|immune response|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|endosome|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0	all_lung(13;0.000294)|Lung NSC(42;0.000964)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		CGGGAGATGTCGGGGGACACC	0.637													17	31					0	0	0	0
PIGS	94005	broad.mit.edu	37	17	26897883	26897883	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:26897883C>T	uc002hbo.2	-	3	646	c.273G>A	c.(271-273)GAG>GAA	p.E91E	PIGS_uc002hbn.2_Silent_p.E83E|PIGS_uc010wap.1_Silent_p.E30E	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	91	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					TCAGAGGAATCTCTCTTTCAT	0.562													5	134					0	0	0	0
KIAA0100	9703	broad.mit.edu	37	17	26965349	26965349	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:26965349G>A	uc002hbu.2	-	13	1532	c.1433C>T	c.(1432-1434)TCC>TTC	p.S478F		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	478						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					CTGAATGTGGGAGTCACTGCC	0.562													28	42					0	0	0	0
NUFIP2	57532	broad.mit.edu	37	17	27613310	27613310	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:27613310C>G	uc002hdy.3	-	2	1791	c.1702G>C	c.(1702-1704)GAG>CAG	p.E568Q	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	568						nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			GTCCGTTTCTCCAGCTCGTAA	0.463													12	84					0	0	0	0
EVI2B	2124	broad.mit.edu	37	17	29632227	29632227	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:29632227G>C	uc002hgk.2	-	2	556	c.401C>G	c.(400-402)TCT>TGT	p.S134C	NF1_uc002hgg.2_Intron|NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron|EVI2B_uc010csq.2_Missense_Mutation_p.S149C	NM_006495	NP_006486	P34910	EVI2B_HUMAN	ecotropic viral integration site 2B precursor	134	Extracellular (Potential).					cytoplasm|integral to plasma membrane				ovary(2)	2		all_cancers(10;6.97e-11)|all_epithelial(10;0.0051)|all_hematologic(16;0.0149)|Breast(31;0.0155)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|all_lung(9;0.0468)|Lung NSC(157;0.094)		UCEC - Uterine corpus endometrioid carcinoma (4;6.64e-05)|all cancers(4;6.88e-13)|Epithelial(4;8.95e-12)|OV - Ovarian serous cystadenocarcinoma(4;1.01e-11)|GBM - Glioblastoma multiforme(4;0.184)		TTGTGTGGTAGAAGTACGGGC	0.448													127	216					0	0	0	0
Unknown	0	broad.mit.edu	37	17	37199482	37199482	+	RNA	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:37199482G>C	uc002hrd.1	+	3		c.2635G>C								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		TGACAGAACTGAGCTTTGGAA	0.353													93	285					0	0	0	0
MED1	5469	broad.mit.edu	37	17	37564043	37564043	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:37564043C>T	uc002hrv.3	-	17	4643	c.4431G>A	c.(4429-4431)CAG>CAA	p.Q1477Q	MED1_uc010wee.1_Silent_p.Q1305Q|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1477	Ser-rich.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		TGGGACTATTCTGATAAGATT	0.438										HNSCC(31;0.082)			27	95					0	0	0	0
KRT27	342574	broad.mit.edu	37	17	38935781	38935781	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:38935781C>T	uc002hvg.2	-	5	986	c.945G>A	c.(943-945)GAG>GAA	p.E315E		NM_181537	NP_853515	Q7Z3Y8	K1C27_HUMAN	keratin 27	315	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity				0		Breast(137;0.000812)				GAAGTTCAATCTCAAGGGTTT	0.453													25	255					0	0	0	0
KRT39	390792	broad.mit.edu	37	17	39118663	39118663	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:39118663G>C	uc002hvo.1	-	4	897	c.861C>G	c.(859-861)TTC>TTG	p.F287L	KRT39_uc010wfm.1_Missense_Mutation_p.F20L	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	287	Coil 2.|Rod.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				CCTGCGTGTTGAACCACTGTT	0.433													82	862					0	0	0	0
NUP85	79902	broad.mit.edu	37	17	73227442	73227442	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:73227442C>T	uc002jng.1	+	12	1362	c.1102C>T	c.(1102-1104)CTG>TTG	p.L368L	NUP85_uc010dgd.1_Silent_p.L323L|NUP85_uc010wrv.1_Silent_p.L322L|NUP85_uc002jnh.1_5'UTR	NM_024844	NP_079120	Q9BW27	NUP85_HUMAN	nucleoporin 85	368					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|nuclear membrane|Nup107-160 complex|spindle	protein binding			ovary(1)	1	all_lung(278;0.14)|Lung NSC(278;0.168)		all cancers(21;3.45e-06)			CAGCATCGCCCTGAGCAACTG	0.582													5	191					0	0	0	0
LRRC30	339291	broad.mit.edu	37	18	7231387	7231387	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr18:7231387G>A	uc010wzk.1	+	1	251	c.251G>A	c.(250-252)CGG>CAG	p.R84Q		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	84	LRR 1.									ovary(1)|liver(1)	2						AACCAGCTCCGGGTTCTCCCT	0.587													23	45					0	0	0	0
RBBP8	5932	broad.mit.edu	37	18	20562197	20562197	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr18:20562197C>G	uc002ktw.2	+	7	776	c.445C>G	c.(445-447)CAA>GAA	p.Q149E	RBBP8_uc002kty.2_Missense_Mutation_p.Q149E|RBBP8_uc002ktz.2_Missense_Mutation_p.Q149E|RBBP8_uc002kua.2_Missense_Mutation_p.Q149E|RBBP8_uc002ktx.1_Missense_Mutation_p.Q149E	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	149	Potential.				cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			TCAACAGCATCAAGCAGCTGA	0.403								Direct_reversal_of_damage|Homologous_recombination					15	21					0	0	0	0
PARD6G	84552	broad.mit.edu	37	18	77960666	77960666	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr18:77960666G>A	uc002lny.2	-	2	388	c.222C>T	c.(220-222)ATC>ATT	p.I74I	PARD6G_uc010xfp.1_Silent_p.I74I	NM_032510	NP_115899	Q9BYG4	PAR6G_HUMAN	PAR-6 gamma protein	74	OPR.				cell cycle|cell division|tight junction assembly	cytosol|tight junction	protein binding				0		all_cancers(4;5.63e-22)|all_epithelial(4;5.86e-15)|all_lung(4;1.32e-05)|Ovarian(4;1.33e-05)|Lung NSC(4;2.77e-05)|Esophageal squamous(42;0.0157)|all_hematologic(56;0.13)|Melanoma(33;0.144)		Epithelial(2;1.48e-13)|all cancers(1;5.77e-13)|OV - Ovarian serous cystadenocarcinoma(15;2.74e-10)|BRCA - Breast invasive adenocarcinoma(31;0.00166)|STAD - Stomach adenocarcinoma(84;0.18)|Lung(128;0.23)		CATCATTGTTGATGGGCAGCA	0.493													6	108					0	0	0	0
ABCA7	10347	broad.mit.edu	37	19	1055346	1055346	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:1055346C>T	uc002lqw.3	+	30	4432	c.4201C>T	c.(4201-4203)CAG>TAG	p.Q1401*	ABCA7_uc010dsb.1_Nonsense_Mutation_p.Q1263*|ABCA7_uc002lqy.2_5'Flank	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1401	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGGTGCGCCAGGGGTGAGC	0.637													5	18					0	0	0	0
C19orf28	126321	broad.mit.edu	37	19	3542796	3542796	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:3542796C>G	uc002lxw.2	-	10	1770	c.1600G>C	c.(1600-1602)GAC>CAC	p.D534H	C19orf28_uc002lxx.2_Intron|C19orf28_uc010dtl.1_5'Flank|C19orf71_uc010xhm.1_Intron	NM_021731	NP_068377	Q6NUT3	CS028_HUMAN	hypothetical protein LOC126321 isoform a	Error:Variant_position_missing_in_Q6NUT3_after_alignment					transmembrane transport	integral to membrane				breast(1)|pancreas(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00251)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCCCCCAGTCTTCCCTGGGC	0.368													11	19					0	0	0	0
ZNF559	84527	broad.mit.edu	37	19	9453221	9453221	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:9453221C>G	uc002mlg.2	+	7	1741	c.1094C>G	c.(1093-1095)TCT>TGT	p.S365C	ZNF559_uc002mlf.2_Missense_Mutation_p.S134C|ZNF559_uc010dwl.1_Missense_Mutation_p.S134C|ZNF559_uc010xkn.1_Missense_Mutation_p.S357C|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Missense_Mutation_p.S429C|ZNF559_uc010dwk.1_Missense_Mutation_p.S134C|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	365	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTTGCTAACTCTTCACATCTT	0.378													13	23					0	0	0	0
TYK2	7297	broad.mit.edu	37	19	10469922	10469922	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:10469922C>G	uc002moc.3	-	15	2482	c.2104G>C	c.(2104-2106)GAG>CAG	p.E702Q	TYK2_uc010dxe.2_Missense_Mutation_p.E517Q|TYK2_uc002mod.2_Missense_Mutation_p.E702Q	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	702	Protein kinase 1.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			TGGCCCCGCTCCCTCCGCAGC	0.637													3	32					0	0	0	0
PLVAP	83483	broad.mit.edu	37	19	17487789	17487789	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:17487789C>G	uc002ngk.1	-	1	359	c.309G>C	c.(307-309)CTG>CTC	p.L103L		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	103	Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						GGCGAGCATTCAGCCACATCT	0.547													10	59					0	0	0	0
NCAN	1463	broad.mit.edu	37	19	19356217	19356217	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:19356217C>T	uc002nlz.2	+	13	3687	c.3588C>T	c.(3586-3588)AAC>AAT	p.N1196N	NCAN_uc002nma.2_Intron	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1196	C-type lectin.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GGCGCTGGAACGATGTCCCCT	0.552													21	56					0	0	0	0
CAPN12	147968	broad.mit.edu	37	19	39234625	39234625	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:39234625C>T	uc002ojd.1	-	1	490	c.181G>A	c.(181-183)GAC>AAC	p.D61N		NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	61	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CCCAGCTGGTCATAGCCAAGG	0.502													22	36					0	0	0	0
ZFP36	7538	broad.mit.edu	37	19	39898586	39898586	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:39898586C>T	uc002olh.1	+	2	286	c.228C>T	c.(226-228)TTC>TTT	p.F76F	ZFP36_uc010egn.1_5'UTR	NM_003407	NP_003398	P26651	TTP_HUMAN	zinc finger protein 36, C3H type, homolog	76					positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	AU-rich element binding|DNA binding|mRNA binding|protein binding|single-stranded RNA binding|zinc ion binding			pancreas(1)	1	all_cancers(60;6.54e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.53e-06)|Ovarian(47;0.0512)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCCCTGGCTTCGCACCGCTGG	0.706													22	33					0	0	0	0
PRX	57716	broad.mit.edu	37	19	40902497	40902497	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:40902497G>C	uc002onr.2	-	7	2031	c.1762C>G	c.(1762-1764)CCA>GCA	p.P588A	PRX_uc002onq.2_Missense_Mutation_p.P449A|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	588	55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGCACCTTTGGAAGCTTCATC	0.567													90	198					0	0	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41447266	41447266	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:41447266C>G	uc010ehh.1	+	5	719	c.711C>G	c.(709-711)AAC>AAG	p.N237K	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450, family 2, subfamily B, polypeptide 6;											ovary(1)|skin(1)	2						TTTACAAAAACCTACAGGAAA	0.527													18	144					0	0	0	0
ZNF284	342909	broad.mit.edu	37	19	44591044	44591044	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:44591044G>C	uc002oyg.1	+	5	1629	c.1413G>C	c.(1411-1413)TTG>TTC	p.L471F	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	471	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				CAGGTATTTTGAGACATAAGA	0.413													33	37					0	0	0	0
MARK4	57787	broad.mit.edu	37	19	45783693	45783693	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:45783693G>A	uc002pbb.1	+	11	1073	c.1068G>A	c.(1066-1068)AAG>AAA	p.K356K	MARK4_uc002paz.1_Missense_Mutation_p.V94I|MARK4_uc002pba.1_Silent_p.K356K|MARK4_uc002pbc.1_Silent_p.K222K			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	356	UBA.				microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCAGCCAGAAGTACAACGAAG	0.607													67	125					0	0	0	0
DHX34	9704	broad.mit.edu	37	19	47884111	47884111	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:47884111C>G	uc010xyn.1	+	15	3362	c.3021C>G	c.(3019-3021)GTC>GTG	p.V1007V	DHX34_uc010xyo.1_Silent_p.V136V	NM_014681	NP_055496	Q14147	DHX34_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 34	1007						intracellular	ATP binding|ATP-dependent helicase activity|RNA binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;7.16e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000489)|GBM - Glioblastoma multiforme(486;0.00413)|Epithelial(262;0.0132)		GGCTAGAAGTCCAGAACATGT	0.438													30	44					0	0	0	0
FAM83E	54854	broad.mit.edu	37	19	49106753	49106753	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:49106753C>T	uc002pjn.2	-	4	1239	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	392										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GGTCTCACCTCGTTGTCCCCA	0.532													12	24					0	0	0	0
TSKS	60385	broad.mit.edu	37	19	50247585	50247585	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:50247585C>G	uc002ppm.2	-	8	1275	c.1264G>C	c.(1264-1266)GAG>CAG	p.E422Q		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	422							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		CCGAACTCCTCCAGAATGGGT	0.597													32	52					0	0	0	0
KLK2	3817	broad.mit.edu	37	19	51379884	51379884	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:51379884C>G	uc002ptv.2	+	3	404	c.363C>G	c.(361-363)CTC>CTG	p.L121L	KLK2_uc010eog.2_Silent_p.L19L|KLK2_uc010yck.1_Silent_p.L121L|KLK2_uc002ptu.2_Silent_p.L121L|KLK2_uc002ptt.2_RNA|KLK2_uc010ycl.1_Silent_p.L104L|KLK2_uc010ycm.1_Silent_p.L19L|KLK2_uc010eoh.2_Silent_p.L19L	NM_005551	NP_005542	P20151	KLK2_HUMAN	kallikrein 2, prostatic isoform 1	121	Peptidase S1.				proteolysis		serine-type endopeptidase activity			ovary(1)|skin(1)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.00871)		GCCATGACCTCATGCTGCTCC	0.582			T	ETV4	prostate								24	42					0	0	0	0
ZNF836	162962	broad.mit.edu	37	19	52659059	52659059	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:52659059G>C	uc010ydi.1	-	5	2251	c.1877C>G	c.(1876-1878)TCA>TGA	p.S626*	ZNF836_uc010ydj.1_Nonsense_Mutation_p.S626*	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	626	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTTATGATTTGAAAGGTTTCC	0.408													77	141					0	0	0	0
ZNF347	84671	broad.mit.edu	37	19	53643671	53643671	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:53643671T>C	uc002qbb.1	-	5	2479	c.2410A>G	c.(2410-2412)AGC>GGC	p.S804G	ZNF347_uc010eql.1_Missense_Mutation_p.S805G|ZNF347_uc002qbc.1_Missense_Mutation_p.S805G	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	804	C2H2-type 20; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		GTAGTTAGGCTTGAACAGATA	0.418													66	101					0	0	0	0
ZNF211	10520	broad.mit.edu	37	19	58146057	58146057	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:58146057G>C	uc002qpq.2	+	2	331	c.151G>C	c.(151-153)GAT>CAT	p.D51H	ZNF211_uc010yhb.1_Missense_Mutation_p.D55H|ZNF211_uc002qpp.2_Missense_Mutation_p.D64H|ZNF211_uc002qpr.2_Missense_Mutation_p.D63H|ZNF211_uc002qps.2_Missense_Mutation_p.D64H|ZNF211_uc002qpt.2_Missense_Mutation_p.D63H|ZNF211_uc010yhc.1_Missense_Mutation_p.D63H|ZNF211_uc010yhd.1_5'UTR|ZNF211_uc010yhe.1_5'UTR	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	51	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGATCTCCTTGATGAGGCTCA	0.498													4	127					0	0	0	0
MZF1	7593	broad.mit.edu	37	19	59080894	59080894	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:59080894C>G	uc002qto.2	-	4	1201	c.640G>C	c.(640-642)GAG>CAG	p.E214Q	LOC100131691_uc002qtm.2_Intron|MZF1_uc002qtn.2_Missense_Mutation_p.E214Q|MZF1_uc010euu.1_Missense_Mutation_p.E255Q	NM_198055	NP_932172	P28698	MZF1_HUMAN	zinc finger protein 42 isoform 2	214					viral reproduction	nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0443)|all cancers(4;7.92e-14)|Epithelial(4;5.57e-11)|OV - Ovarian serous cystadenocarcinoma(4;1.13e-09)|GBM - Glioblastoma multiforme(193;0.0108)|Lung(386;0.182)		TGGGCCTCCTCAGGCAGGAGG	0.597													30	45					0	0	0	0
LPIN1	23175	broad.mit.edu	37	2	11955216	11955216	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:11955216A>G	uc010yjn.1	+	18	2418	c.2144A>G	c.(2143-2145)AAT>AGT	p.N715S	LPIN1_uc010yjm.1_Missense_Mutation_p.N800S|LPIN1_uc002rbt.2_Missense_Mutation_p.N715S|LPIN1_uc010yjo.1_Missense_Mutation_p.N216S	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	715	C-LIP.				fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		TCTTTCAGGAATGGATATAAA	0.488													18	36					0	0	0	0
WDR35	57539	broad.mit.edu	37	2	20113939	20113939	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:20113939G>A	uc002rdi.2	-	27	3362	c.3254C>T	c.(3253-3255)TCA>TTA	p.S1085L	WDR35_uc002rdj.2_Missense_Mutation_p.S1074L|WDR35_uc010ext.2_RNA|WDR35_uc002rdh.2_Intron	NM_001006657	NP_001006658	Q9P2L0	WDR35_HUMAN	WD repeat domain 35 isoform 1	1085										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAAAGCTTTTGAACAAGTCCC	0.433													30	53					0	0	0	0
APOB	338	broad.mit.edu	37	2	21232316	21232316	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:21232316G>T	uc002red.2	-	26	7552	c.7424C>A	c.(7423-7425)GCC>GAC	p.A2475D		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2475					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGCAACTGTGGCCTTGGTTTC	0.418													26	107					2.65835e-16	2.81923e-16	1	0
NLRC4	58484	broad.mit.edu	37	2	32476577	32476577	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:32476577G>A	uc002roi.2	-	4	602	c.356C>T	c.(355-357)CCC>CTC	p.P119L	NLRC4_uc002roj.1_Missense_Mutation_p.P119L|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	119					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TTCACCAAGGGGATAAAAGTT	0.433													27	40					0	0	0	0
NLRC4	58484	broad.mit.edu	37	2	32476659	32476659	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:32476659G>C	uc002roi.2	-	4	520	c.274C>G	c.(274-276)CAG>GAG	p.Q92E	NLRC4_uc002roj.1_Missense_Mutation_p.Q92E|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	92					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TCTGATGTCTGATGAAAAAGA	0.433													25	48					0	0	0	0
TTC27	55622	broad.mit.edu	37	2	32983539	32983539	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:32983539G>C	uc002rom.2	+	13	1864	c.1633G>C	c.(1633-1635)GAG>CAG	p.E545Q	TTC27_uc010ymx.1_Missense_Mutation_p.E495Q|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	545	TPR 3.|HAT 1.						protein binding			central_nervous_system(1)	1						GGAGTTTCAAGAGTGTGTAGA	0.522													34	60					0	0	0	0
GALM	130589	broad.mit.edu	37	2	38893363	38893363	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:38893363G>A	uc002rqy.2	+	1	312	c.60G>A	c.(58-60)GAG>GAA	p.E20E		NM_138801	NP_620156	Q96C23	GALM_HUMAN	galactose mutarotase	20					hexose metabolic process	cytoplasm	aldose 1-epimerase activity|carbohydrate binding				0		all_hematologic(82;0.248)				GGACAGTGGAGAAGTTCCAGC	0.597													15	42					0	0	0	0
FAM161A	84140	broad.mit.edu	37	2	62067353	62067353	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:62067353G>A	uc010ypo.1	-	3	888	c.786C>T	c.(784-786)ATC>ATT	p.I262I	FAM161A_uc002sbm.3_Silent_p.I262I|FAM161A_uc002sbn.3_Silent_p.I72I|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Silent_p.I153I	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	262					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						GTACCATTTCGATATCTGATT	0.393													37	69					0	0	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522815	95522815	+	RNA	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:95522815A>G	uc010fhp.2	-	1		c.6T>C				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ATCTTCTGCAATTCGGAGTCC	0.652													3	102					0	0	0	0
TRIM43	129868	broad.mit.edu	37	2	96260159	96260159	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:96260159G>C	uc002suv.2	+	2	524	c.388G>C	c.(388-390)GAA>CAA	p.E130Q		NM_138800	NP_620155	Q96BQ3	TRI43_HUMAN	tripartite motif-containing 43	130	Potential.					intracellular	zinc ion binding			ovary(1)	1						CCATCCCATCGAAGAGGCAGC	0.488													37	53					0	0	0	0
FAHD2B	151313	broad.mit.edu	37	2	97749505	97749505	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:97749505T>C	uc002sxm.2	-	8	1083	c.932A>G	c.(931-933)AAC>AGC	p.N311S		NM_199336	NP_955368	Q6P2I3	FAH2B_HUMAN	fumarylacetoacetate hydrolase domain containing	311							hydrolase activity|metal ion binding				0						CACCACCTTGTTGATGATGAC	0.567													38	88					0	0	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105912815	105912815	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:105912815G>A	uc002tcq.2	-	4	1120	c.1036C>T	c.(1036-1038)CAG>TAG	p.Q346*	TGFBRAP1_uc010fjc.2_Nonsense_Mutation_p.Q116*|TGFBRAP1_uc002tcr.3_Nonsense_Mutation_p.Q346*	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	346					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						TTACAAACCTGAAATTTTTCC	0.328													37	74					0	0	0	0
GCC2	9648	broad.mit.edu	37	2	109103017	109103017	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:109103017G>A	uc002tec.2	+	16	3997	c.3843G>A	c.(3841-3843)CTG>CTA	p.L1281L	GCC2_uc002ted.2_Silent_p.L1180L	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1281	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ACGAGCACCTGAAAACCTCTG	0.473													50	79					0	0	0	0
IL1F8	27177	broad.mit.edu	37	2	113780314	113780314	+	Silent	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:113780314G>C	uc002tiq.1	-	6	536	c.432C>G	c.(430-432)CTC>CTG	p.L144L		NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	144					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						CCTTCTTCCTGAGATGGTGAT	0.433													51	68					0	0	0	0
DBI	1622	broad.mit.edu	37	2	120128369	120128369	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:120128369G>A	uc002tlv.2	+	3	305	c.181G>A	c.(181-183)GAG>AAG	p.E61K	DBI_uc010yyh.1_Missense_Mutation_p.E78K|DBI_uc010yyi.1_Missense_Mutation_p.E78K|DBI_uc010yyj.1_RNA|DBI_uc010yyk.1_Missense_Mutation_p.E103K|DBI_uc010yyl.1_Missense_Mutation_p.E78K|DBI_uc010yym.1_Missense_Mutation_p.E71K|DBI_uc010yyn.1_Missense_Mutation_p.E78K|DBI_uc002tlw.2_Missense_Mutation_p.E78K|DBI_uc010yyo.1_RNA|DBI_uc002tlx.2_Missense_Mutation_p.E62K	NM_001079862	NP_001073331	P07108	ACBP_HUMAN	diazepam binding inhibitor isoform 3	61	ACB.				transport		benzodiazepine receptor binding|fatty-acyl-CoA binding				0						TGCCTGGAATGAGCTGAAAGG	0.418													14	27					0	0	0	0
ERCC3	2071	broad.mit.edu	37	2	128038127	128038127	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:128038127C>G	uc002toh.1	-	9	1518	c.1423G>C	c.(1423-1425)GAC>CAC	p.D475H	ERCC3_uc002toe.1_Missense_Mutation_p.D230H|ERCC3_uc002tof.1_Missense_Mutation_p.D411H|ERCC3_uc002tog.1_Missense_Mutation_p.D411H	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	475	Helicase ATP-binding.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		ACAATTTTGTCATCTTCGCGG	0.507			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				17	45					0	0	0	0
GPR39	2863	broad.mit.edu	37	2	133402856	133402856	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:133402856T>G	uc002ttl.2	+	2	1508	c.1039T>G	c.(1039-1041)TCC>GCC	p.S347A	LYPD1_uc002ttm.3_3'UTR|LYPD1_uc002ttn.2_3'UTR|LYPD1_uc002tto.2_3'UTR	NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	347	Helical; Name=7; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						GTACACGGTGTCCTCGCAGCA	0.622													23	72					0	0	0	0
YSK4	80122	broad.mit.edu	37	2	135744048	135744048	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:135744048C>G	uc002tue.1	-	7	2425	c.2394G>C	c.(2392-2394)CAG>CAC	p.Q798H	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.Q685H|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.Q526H|YSK4_uc002tui.3_Missense_Mutation_p.Q815H	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	798							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GGAATTCATTCTGTTTCATGG	0.393													21	70					0	0	0	0
KYNU	8942	broad.mit.edu	37	2	143797996	143797996	+	Splice_Site	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:143797996G>A	uc002tvl.2	+	13	1172	c.1042_splice	c.e13-1	p.I348_splice	KYNU_uc010fnm.2_Splice_Site_p.I348_splice	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a						anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TCATTCCACAGATCTTTAAGC	0.333													21	50					0	0	0	0
ABCB11	8647	broad.mit.edu	37	2	169788945	169788945	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:169788945A>G	uc002ueo.1	-	24	3281	c.3155T>C	c.(3154-3156)TTT>TCT	p.F1052S	ABCB11_uc010zda.1_Missense_Mutation_p.F494S|ABCB11_uc010zdb.1_Missense_Mutation_p.F528S	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1052	Cytoplasmic (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	CAGCAGTTGAAAAAAGCGTGC	0.373													8	10					0	0	0	0
ABCB11	8647	broad.mit.edu	37	2	169792772	169792772	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:169792772G>C	uc002ueo.1	-	22	2908	c.2782C>G	c.(2782-2784)CGA>GGA	p.R928G	ABCB11_uc010zda.1_Missense_Mutation_p.R370G|ABCB11_uc010zdb.1_Missense_Mutation_p.R404G	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	928	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TGCTTATCTCGAGAGGCAAAT	0.488													18	29					0	0	0	0
PDK1	5163	broad.mit.edu	37	2	173429336	173429336	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:173429336C>G	uc002uhr.2	+	4	616	c.516C>G	c.(514-516)GTC>GTG	p.V172V	PDK1_uc010zdz.1_Silent_p.V17V|PDK1_uc010zea.1_RNA|PDK1_uc002uhq.1_Silent_p.V192V|PDK1_uc002uhs.2_Silent_p.V172V|PDK1_uc010zeb.1_Silent_p.V192V	NM_002610	NP_002601	Q15118	PDK1_HUMAN	pyruvate dehydrogenase kinase 1 precursor	172	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|small GTPase mediated signal transduction	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(3)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.12)			TGGATCCTGTCACCAGCCAGA	0.443									Autosomal_Dominant_Polycystic_Kidney_Disease				26	55					0	0	0	0
TTC30A	92104	broad.mit.edu	37	2	178482268	178482268	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:178482268C>G	uc002ulo.2	-	1	1427	c.1162G>C	c.(1162-1164)GAG>CAG	p.E388Q		NM_152275	NP_689488	Q86WT1	TT30A_HUMAN	tetratricopeptide repeat domain 30A	388					cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000423)|Epithelial(96;0.00373)|all cancers(119;0.0169)			CGAAGCTGCTCAGTCAGCATC	0.463													99	122					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179392320	179392320	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:179392320C>T	uc010zfg.1	-	311	100053	c.99829G>A	c.(99829-99831)GAG>AAG	p.E33277K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E26972K|TTN_uc010zfi.1_Missense_Mutation_p.E26905K|TTN_uc010zfj.1_Missense_Mutation_p.E26780K|TTN_uc002umq.2_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34204							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTTCATCTCAGTCATGCTG	0.478													36	35					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179458787	179458787	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:179458787C>G	uc010zfg.1	-	246	50853	c.50629G>C	c.(50629-50631)GAG>CAG	p.E16877Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E10572Q|TTN_uc010zfi.1_Missense_Mutation_p.E10505Q|TTN_uc010zfj.1_Missense_Mutation_p.E10380Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17804							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGATCTTCTCTAAAGCAAGT	0.438													60	112					0	0	0	0
MFSD6	54842	broad.mit.edu	37	2	191362379	191362379	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:191362379C>G	uc002urz.2	+	7	2430	c.2106C>G	c.(2104-2106)CTC>CTG	p.L702L	MFSD6_uc010zge.1_Silent_p.L164L	NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	702					transmembrane transport	integral to membrane				ovary(2)	2						TCTATGCACTCTACCAAATTA	0.463													33	26					0	0	0	0
ITCH	83737	broad.mit.edu	37	20	33001680	33001680	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:33001680C>T	uc010geu.1	+	6	662	c.470C>T	c.(469-471)TCA>TTA	p.S157L	ITCH_uc002xak.2_Missense_Mutation_p.S157L|ITCH_uc010zuj.1_Missense_Mutation_p.S47L	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	157					apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						ACTACATGTTCAGAAAGTAAG	0.328													22	28					0	0	0	0
CEP250	11190	broad.mit.edu	37	20	34090860	34090860	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:34090860C>G	uc002xcm.2	+	31	5334	c.4663C>G	c.(4663-4665)CTG>GTG	p.L1555V	CEP250_uc010zve.1_Missense_Mutation_p.L923V	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1555	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GTTGGTTACTCTGGAATGCCT	0.498													27	82					0	0	0	0
CEP250	11190	broad.mit.edu	37	20	34091370	34091370	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:34091370G>C	uc002xcm.2	+	31	5844	c.5173G>C	c.(5173-5175)GAG>CAG	p.E1725Q	CEP250_uc010zve.1_Missense_Mutation_p.E1093Q	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1725	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CGGGAGCCTAGAGCACATGAA	0.577													56	92					0	0	0	0
RBM12	10137	broad.mit.edu	37	20	34242517	34242517	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:34242517C>T	uc002xdq.2	-	3	960	c.728G>A	c.(727-729)GGC>GAC	p.G243D	CPNE1_uc010zvj.1_5'Flank|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.G243D|RBM12_uc002xds.2_Missense_Mutation_p.G243D	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	243	Pro-rich.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GGGCGGCATGCCCGACATGGG	0.552													4	128					0	0	0	0
MYL9	10398	broad.mit.edu	37	20	35173441	35173441	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:35173441G>T	uc002xfl.1	+	2	248	c.154G>T	c.(154-156)GAG>TAG	p.E52*	uc002xfk.3_Intron|MYL9_uc002xfm.1_Nonsense_Mutation_p.E52*	NM_006097	NP_006088	P24844	MYL9_HUMAN	myosin regulatory light chain 9 isoform a	52	|EF-hand 1.				axon guidance|muscle contraction|regulation of muscle contraction	cytosol|muscle myosin complex	calcium ion binding|structural constituent of muscle				0	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CATTGACAAGGAGGACCTGCA	0.542													13	74					3.41278e-10	3.53776e-10	1	0
C20orf117	140710	broad.mit.edu	37	20	35444081	35444081	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:35444081C>T	uc002xgd.1	-	5	1377	c.1050G>A	c.(1048-1050)AAG>AAA	p.K350K	C20orf117_uc002xge.1_RNA	NM_199181	NP_954650	O94964	K0889_HUMAN	hypothetical protein LOC140710 isoform 2	350											0		Myeloproliferative disorder(115;0.00874)				ACTGCAGCTTCTTGACCTTGC	0.647													6	9					0	0	0	0
ZHX3	23051	broad.mit.edu	37	20	39831571	39831571	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:39831571C>G	uc002xjs.1	-	3	2364	c.1986G>C	c.(1984-1986)GAG>GAC	p.E662D	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Missense_Mutation_p.E662D|ZHX3_uc002xjt.1_Missense_Mutation_p.E662D|ZHX3_uc002xju.1_Missense_Mutation_p.E662D|ZHX3_uc002xjv.1_Missense_Mutation_p.E662D|ZHX3_uc002xjw.1_Missense_Mutation_p.E662D|ZHX3_uc010ggg.1_Missense_Mutation_p.E662D	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	662	Homeobox 3.				negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				TTTTCCGTCTCTCTGAAAACC	0.493													103	182					0	0	0	0
SFRS6	6431	broad.mit.edu	37	20	42086714	42086714	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:42086714G>C	uc010zwg.1	+	1	211	c.41G>C	c.(40-42)CGG>CCG	p.R14P	SFRS6_uc002xki.2_5'UTR|SFRS6_uc002xkk.2_Missense_Mutation_p.R14P	NM_006275	NP_006266	Q13247	SRSF6_HUMAN	arginine/serine-rich splicing factor 6	14	RRM 1.				mRNA 3'-end processing|mRNA export from nucleus|mRNA splice site selection|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TACAACGTCCGGGAGAAGGAC	0.647													27	39					0	0	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871400	51871400	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:51871400G>C	uc002xwo.2	+	2	2359	c.1403G>C	c.(1402-1404)AGG>ACG	p.R468T		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	468					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AAAAAAGAAAGGCCAGAGGAA	0.423													56	96					0	0	0	0
HUNK	30811	broad.mit.edu	37	21	33371383	33371383	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr21:33371383G>C	uc002yph.2	+	11	2391	c.2031G>C	c.(2029-2031)CAG>CAC	p.Q677H		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	677					multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						AGCGCCATCAGAGTCTGCAGC	0.612													30	63					0	0	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467896	35467896	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr21:35467896C>G	uc002yto.2	+	2	911	c.399C>G	c.(397-399)CTC>CTG	p.L133L	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	133	Helical; (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						CTCTGATTCTCTATATTTTCA	0.448													92	170					0	0	0	0
UMODL1	89766	broad.mit.edu	37	21	43531075	43531075	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr21:43531075C>T	uc002zaf.1	+	11	1743	c.1743C>T	c.(1741-1743)CTC>CTT	p.L581L	UMODL1_uc002zad.1_Silent_p.L509L|UMODL1_uc002zae.1_Silent_p.L509L|UMODL1_uc002zag.1_Silent_p.L581L|C21orf128_uc002zak.2_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	581	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CAGCAGCCCTCGGCCTAGAGA	0.657													18	42					0	0	0	0
DGCR5	26220	broad.mit.edu	37	22	18979430	18979430	+	RNA	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:18979430G>C	uc002zom.1	+	6		c.2716G>C			DGCR5_uc002zon.1_RNA	NR_002733				Homo sapiens mRNA for KIAA1647 protein, partial cds.												0						CGTCCTGGTGGAGTTCACCCT	0.577													16	22					0	0	0	0
TSSK2	23617	broad.mit.edu	37	22	19119070	19119070	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:19119070T>G	uc002zow.2	+	1	750	c.158T>G	c.(157-159)GTG>GGG	p.V53G	DGCR14_uc002zot.2_3'UTR|DGCR14_uc002zou.2_3'UTR|DGCR14_uc002zov.2_RNA	NM_053006	NP_443732	Q96PF2	TSSK2_HUMAN	testis-specific serine kinase 2	53	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1	Colorectal(54;0.0993)					ACTGACTTTGTGGAGAGATTC	0.498													22	30					0	0	0	0
TOP3B	8940	broad.mit.edu	37	22	22317203	22317203	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:22317203C>G	uc002zvs.2	-	12	1702	c.1267G>C	c.(1267-1269)GAC>CAC	p.D423H	TOP3B_uc010gtm.1_5'UTR|TOP3B_uc002zvr.2_Missense_Mutation_p.D148H|TOP3B_uc010gtl.2_Missense_Mutation_p.D423H|TOP3B_uc002zvt.3_Missense_Mutation_p.D423H	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	423					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		TACTTGCAGTCATGGCTGACC	0.612													36	64					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	22758781	22758781	+	RNA	SNP	T	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:22758781T>C	uc011aim.1	+	52		c.5866T>C								Parts of antibodies, mostly variable regions.												0						CGCAGCCGCCTTCAGTGTCTG	0.587													3	62					0	0	0	0
CABIN1	23523	broad.mit.edu	37	22	24483645	24483645	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:24483645G>A	uc002zzi.1	+	23	3631	c.3504G>A	c.(3502-3504)CTG>CTA	p.L1168L	CABIN1_uc002zzj.1_Silent_p.L1118L|CABIN1_uc002zzl.1_Silent_p.L1168L	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1168					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GAGGCGAGCTGCCCCCTGAGC	0.567													54	63					0	0	0	0
RFPL2	10739	broad.mit.edu	37	22	32590359	32590359	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:32590359C>G	uc003amg.3	-	3	1174	c.238G>C	c.(238-240)GAG>CAG	p.E80Q	RFPL2_uc003ame.3_5'Flank|RFPL2_uc003amf.3_5'UTR|RFPL2_uc003amh.3_Intron	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	80							zinc ion binding			skin(1)	1						CCTCTGTCCTCCAGCTGCTTC	0.562													15	23					0	0	0	0
RAC2	5880	broad.mit.edu	37	22	37637674	37637674	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:37637674G>A	uc003arc.2	-	2	177	c.60C>T	c.(58-60)CTC>CTT	p.L20L		NM_002872	NP_002863	P15153	RAC2_HUMAN	ras-related C3 botulinum toxin substrate 2	20					axon guidance|platelet activation|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|protein binding			breast(2)|central_nervous_system(1)|skin(1)	4						TGTAGCTGATGAGAAGGCAGG	0.622													52	72					0	0	0	0
TOB2	10766	broad.mit.edu	37	22	41832490	41832490	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:41832490C>G	uc003azz.1	-	2	1567	c.860G>C	c.(859-861)GGA>GCA	p.G287A		NM_016272	NP_057356	Q14106	TOB2_HUMAN	transducer of ERBB2, 2	287				QGSGTPGPFGGSGAGTCNSSSFDMAQVFGGGANSLFLEKT -> RAAAPQARLEAVGLAPATAAALTWPRYLEVVPTASSWR RH (in Ref. 1; BAA10971).	female gamete generation|negative regulation of cell proliferation	cytoplasm|nucleus				ovary(1)	1						CCCACTGCCTCCAAACGGGCC	0.378													25	24					0	0	0	0
SAPS2	9701	broad.mit.edu	37	22	50854547	50854547	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr22:50854547G>A	uc003blb.1	+	7	1001	c.579G>A	c.(577-579)CAG>CAA	p.Q193Q	SAPS2_uc003bky.1_Silent_p.Q193Q|SAPS2_uc003bkz.1_Silent_p.Q193Q|SAPS2_uc003blc.2_Silent_p.Q193Q|SAPS2_uc003bla.1_Silent_p.Q193Q	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	193						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		AGGTCATCCAGAGGCTTGTGG	0.517													10	78					0	0	0	0
TMEM40	55287	broad.mit.edu	37	3	12777058	12777058	+	Silent	SNP	C	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:12777058C>A	uc003bxg.1	-	11	805	c.678G>T	c.(676-678)CTG>CTT	p.L226L	TMEM40_uc003bxh.1_Silent_p.L196L|TMEM40_uc003bxi.1_Silent_p.L150L|TMEM40_uc011auv.1_Silent_p.L242L	NM_018306	NP_060776	Q8WWA1	TMM40_HUMAN	transmembrane protein 40	226						integral to membrane					0						AGTTACCTGTCAGCCTAAACT	0.403													7	69					2.74318e-10	2.85167e-10	1	0
FBLN2	2199	broad.mit.edu	37	3	13670672	13670672	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:13670672G>T	uc011avb.1	+	12	2706	c.2581G>T	c.(2581-2583)GAG>TAG	p.E861*	FBLN2_uc011auz.1_Nonsense_Mutation_p.E887*|FBLN2_uc011ava.1_Nonsense_Mutation_p.E908*|FBLN2_uc011avc.1_Nonsense_Mutation_p.E908*	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	861	EGF-like 6; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			AGACGTGAATGAGTGTGAGAC	0.667													16	9					1.33834e-09	1.38345e-09	1	0
PRSS50	29122	broad.mit.edu	37	3	46759219	46759219	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:46759219C>G	uc003cqe.1	-	1	155	c.96G>C	c.(94-96)CTG>CTC	p.L32L	PRSS50_uc003cqf.1_Intron	NM_013270	NP_037402	Q9UI38	TSP50_HUMAN	testes-specific protease 50 precursor	32					proteolysis	endoplasmic reticulum	serine-type endopeptidase activity|threonine-type endopeptidase activity				0						CTGCAGACCTCAGCAACAGAA	0.721													6	2					0	0	0	0
PTH1R	5745	broad.mit.edu	37	3	46935398	46935398	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:46935398T>G	uc003cqm.2	+	4	280	c.77T>G	c.(76-78)GTG>GGG	p.V26G	PTH1R_uc003cqn.2_Missense_Mutation_p.V26G	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	26						cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						GCTTGGCAGGTGGATGCAGAT	0.572									Ollier_disease_/_Maffuci_syndrome				6	17					0	0	0	0
SLMAP	7871	broad.mit.edu	37	3	57743444	57743444	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:57743444C>T	uc003dje.1	+	1	271	c.66C>T	c.(64-66)GTC>GTT	p.V22V	SLMAP_uc003djc.1_Silent_p.V22V|SLMAP_uc003djd.1_Silent_p.V22V|SLMAP_uc003djf.1_Silent_p.V22V	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	22	Necessary for targeting to centrosomes (By similarity).|Cytoplasmic (Potential).				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		AGCGTCATGTCTACCTGGACG	0.572													26	9					0	0	0	0
LRIG1	26018	broad.mit.edu	37	3	66432706	66432706	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:66432706C>G	uc003dmx.2	-	16	2622	c.2608G>C	c.(2608-2610)GAG>CAG	p.E870Q	SLC25A26_uc011bft.1_Intron|LRIG1_uc011bfu.1_Missense_Mutation_p.E490Q|LRIG1_uc003dmw.2_Missense_Mutation_p.E536Q|LRIG1_uc010hnz.2_Missense_Mutation_p.E586Q|LRIG1_uc010hoa.2_Missense_Mutation_p.E847Q	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	870	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		CCATTGCTCTCAATGTGCCCA	0.567													56	38					0	0	0	0
HTR1F	3355	broad.mit.edu	37	3	88040493	88040493	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:88040493G>C	uc003dqr.2	+	2	752	c.594G>C	c.(592-594)TTG>TTC	p.L198F		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	198	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	CATTGATTTTGATCCTTTACT	0.408													51	16					0	0	0	0
DCBLD2	131566	broad.mit.edu	37	3	98518387	98518387	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:98518387G>A	uc003dtd.2	-	16	2520	c.2157C>T	c.(2155-2157)CTC>CTT	p.L719L	DCBLD2_uc003dte.2_Silent_p.L733L	NM_080927	NP_563615	Q96PD2	DCBD2_HUMAN	discoidin, CUB and LCCL domain containing 2	719	Cytoplasmic (Potential).				cell adhesion|intracellular receptor mediated signaling pathway|negative regulation of cell growth|wound healing	cell surface|integral to plasma membrane				ovary(2)|central_nervous_system(1)	3						CAGTCCTGGAGAGAAGTGTAT	0.572													67	253					0	0	0	0
HSPBAP1	79663	broad.mit.edu	37	3	122474119	122474119	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:122474119C>G	uc003efu.1	-	5	852	c.729G>C	c.(727-729)CTG>CTC	p.L243L	HSPBAP1_uc003efv.1_3'UTR	NM_024610	NP_078886	Q96EW2	HBAP1_HUMAN	Hspb associated protein 1	243	JmjC.					cytoplasm				ovary(1)|lung(1)	2				GBM - Glioblastoma multiforme(114;0.0531)		GTCCTGGGCTCAGTGTAACCG	0.448													19	55					0	0	0	0
UROC1	131669	broad.mit.edu	37	3	126219702	126219702	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:126219702G>A	uc003eiz.1	-	11	1013	c.981C>T	c.(979-981)CAC>CAT	p.H327H	UROC1_uc010hsi.1_Silent_p.H387H	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	327					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		TGTCCAATTCGTGGACCAGGC	0.637													23	40					0	0	0	0
CHST13	166012	broad.mit.edu	37	3	126260987	126260987	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:126260987A>T	uc003eja.2	+	3	592	c.592A>T	c.(592-594)AGG>TGG	p.R198W		NM_152889	NP_690849	Q8NET6	CHSTD_HUMAN	carbohydrate sulfotransferase 13	198	Lumenal (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.151)		CGCCTTCCAGAGGCGCTACGG	0.547													9	11					0	0	0	0
ACAD11	84129	broad.mit.edu	37	3	132345633	132345633	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:132345633C>G	uc003eov.3	-	9	1479	c.1099G>C	c.(1099-1101)GAT>CAT	p.D367H	ACAD11_uc011blr.1_5'UTR|ACAD11_uc003eoy.2_Missense_Mutation_p.D367H	NM_032169	NP_115545	Q709F0	ACD11_HUMAN	putative acyl-CoA dehydrogenase	367						peroxisome	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|transferase activity, transferring phosphorus-containing groups			ovary(1)	1						CCAGTAGTATCAATCTGTGGT	0.338													19	55					0	0	0	0
ZBTB38	253461	broad.mit.edu	37	3	141161524	141161524	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:141161524C>G	uc003etw.2	+	8	1276	c.294C>G	c.(292-294)GTC>GTG	p.V98V	ZBTB38_uc010hun.2_Silent_p.V95V|ZBTB38_uc010huo.2_Silent_p.V98V|ZBTB38_uc003ety.2_Silent_p.V98V|ZBTB38_uc010hup.2_Silent_p.V99V	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	98	BTB.				positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CAGTCGTTGTCAAGAGACAGG	0.438													8	64					0	0	0	0
MED12L	116931	broad.mit.edu	37	3	151072985	151072985	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:151072985C>G	uc003eyp.2	+	16	2408	c.2370C>G	c.(2368-2370)CTC>CTG	p.L790L	MED12L_uc011bnz.1_Silent_p.L650L|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_5'Flank	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	790					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCACTAAACTCCAGCTCCTTT	0.358													32	63					0	0	0	0
MED12L	116931	broad.mit.edu	37	3	151078367	151078367	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:151078367C>T	uc003eyp.2	+	19	2864	c.2826C>T	c.(2824-2826)CTC>CTT	p.L942L	MED12L_uc011bnz.1_Silent_p.L802L|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Silent_p.L106L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	942					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTAGCCACCTCAGAAGTAAAT	0.428													68	173					0	0	0	0
IGSF10	285313	broad.mit.edu	37	3	151155107	151155107	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:151155107C>G	uc011bod.1	-	6	7242	c.7242G>C	c.(7240-7242)AGG>AGC	p.R2414S	IGSF10_uc011bob.1_Missense_Mutation_p.R441S|IGSF10_uc011boc.1_Missense_Mutation_p.R393S	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2414	Ig-like C2-type 10.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CAACTTTATTCCTAGCTGCAC	0.393													62	131					0	0	0	0
IGSF10	285313	broad.mit.edu	37	3	151155347	151155347	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:151155347C>G	uc011bod.1	-	6	7002	c.7002G>C	c.(7000-7002)CTG>CTC	p.L2334L	IGSF10_uc011bob.1_Silent_p.L361L|IGSF10_uc011boc.1_Silent_p.L313L	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2334					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCGGTCTTCTCAGCATTTCCA	0.448													67	178					0	0	0	0
BCHE	590	broad.mit.edu	37	3	165548470	165548470	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:165548470C>T	uc003fem.3	-	2	512	c.352G>A	c.(352-354)GAA>AAA	p.E118K	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	118					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	AAACAGTCTTCACTGAGGTCA	0.388													23	64					0	0	0	0
FNDC3B	64778	broad.mit.edu	37	3	172070742	172070742	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:172070742G>A	uc003fhy.2	+	22	2836	c.2664G>A	c.(2662-2664)CTG>CTA	p.L888L	FNDC3B_uc003fhz.3_Silent_p.L888L	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	888	Fibronectin type-III 7.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		GCCTTGTACTGAACTGGGAAG	0.542													31	95					0	0	0	0
YEATS2	55689	broad.mit.edu	37	3	183493896	183493896	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:183493896C>T	uc003fly.2	+	18	2757	c.2562C>T	c.(2560-2562)CTC>CTT	p.L854L	YEATS2_uc003flz.2_5'UTR	NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	854					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			CTTACATCCTCAAGCAAACTC	0.318													11	33					0	0	0	0
EPHB3	2049	broad.mit.edu	37	3	184295229	184295229	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:184295229G>C	uc003foz.2	+	6	1890	c.1453G>C	c.(1453-1455)GAC>CAC	p.D485H		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	485	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			AGTCATCCTGGACTACGAGAT	0.602													3	130					0	0	0	0
EPHB3	2049	broad.mit.edu	37	3	184298534	184298534	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:184298534C>T	uc003foz.2	+	13	2843	c.2406C>T	c.(2404-2406)ATC>ATT	p.I802I		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	802	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			AGATCCCCATCCGCTGGACTG	0.642													15	76					0	0	0	0
EPHB3	2049	broad.mit.edu	37	3	184298946	184298946	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:184298946C>T	uc003foz.2	+	14	3162	c.2725C>T	c.(2725-2727)CAG>TAG	p.Q909*		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	909	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			TGCCAGCGCTCAGTCTGGGTT	0.572													48	127					0	0	0	0
TMEM41A	90407	broad.mit.edu	37	3	185209541	185209541	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:185209541C>G	uc003fpj.2	-	5	675	c.579G>C	c.(577-579)TTG>TTC	p.L193F	TMEM41A_uc003fpk.2_Nonstop_Mutation_p.*93S	NM_080652	NP_542383	Q96HV5	TM41A_HUMAN	transmembrane protein 41A precursor	193	Helical; (Potential).					integral to membrane					0	all_cancers(143;7.78e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			TATATGGGATCAAACCTGGAA	0.423													21	52					0	0	0	0
PPP1R2	5504	broad.mit.edu	37	3	195243706	195243706	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:195243706T>A	uc003fup.2	-	6	982	c.606A>T	c.(604-606)TTA>TTT	p.L202F		NM_006241	NP_006232	P41236	IPP2_HUMAN	protein phosphatase 1, regulatory subunit 2	202					glycogen metabolic process|regulation of phosphoprotein phosphatase activity|regulation of signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity			urinary_tract(1)	1	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)		Epithelial(36;2.64e-22)|all cancers(36;2.69e-20)|OV - Ovarian serous cystadenocarcinoma(49;3.52e-19)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;9.55e-05)		ATGAACTTCGTAATTTGTTTT	0.358													29	27					0	0	0	0
PAK2	5062	broad.mit.edu	37	3	196554193	196554193	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr3:196554193G>C	uc003fwy.3	+	14	1799	c.1477G>C	c.(1477-1479)GAA>CAA	p.E493Q		NM_002577	NP_002568	Q13177	PAK2_HUMAN	p21-activated kinase 2	493	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of apoptosis|regulation of defense response to virus by virus|regulation of growth|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|nucleus|perinuclear region of cytoplasm|plasma membrane	ATP binding|identical protein binding|protein kinase binding|protein serine/threonine kinase activity|protein tyrosine kinase activator activity			ovary(1)|lung(1)	2	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;6.38e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00405)		TTCAGCCAAAGAATTATTACA	0.358													41	82					0	0	0	0
SLC34A2	10568	broad.mit.edu	37	4	25671434	25671434	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr4:25671434C>T	uc003grr.2	+	7	882	c.801C>T	c.(799-801)ATC>ATT	p.I267I	SLC34A2_uc003grs.2_Silent_p.I266I|SLC34A2_uc010iev.2_Silent_p.I266I	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	267	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TGAAAGTCATCACTAAGCCCT	0.483													74	41					0	0	0	0
ARAP2	116984	broad.mit.edu	37	4	36130348	36130348	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr4:36130348G>C	uc003gsq.1	-	21	3785	c.3447C>G	c.(3445-3447)ATC>ATG	p.I1149M		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1149	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCTTTTGATAGATATATTTGC	0.294													25	44					0	0	0	0
PDS5A	23244	broad.mit.edu	37	4	39929692	39929692	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr4:39929692G>A	uc003guv.3	-	3	771	c.231C>T	c.(229-231)TTC>TTT	p.F77F	PDS5A_uc010ifo.2_Silent_p.F37F|PDS5A_uc003guw.3_Silent_p.F77F	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	77					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						TCCTGAGGAAGAATTCAGATG	0.423													35	33					0	0	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356015	40356015	+	Silent	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr4:40356015G>C	uc003gva.1	+	5	934	c.918G>C	c.(916-918)ACG>ACC	p.T306T		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	306	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	ACATAGCCACGATGGCCCTGA	0.433													56	216					0	0	0	0
MOBKL1A	92597	broad.mit.edu	37	4	71835700	71835700	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr4:71835700C>T	uc003hfw.2	+	3	424	c.234C>T	c.(232-234)TTC>TTT	p.F78F	MOBKL1A_uc003hfv.1_Silent_p.F78F|MOBKL1A_uc011cba.1_Silent_p.F83F	NM_173468	NP_775739	Q7L9L4	MOL1A_HUMAN	MOB1, Mps One Binder kinase activator-like 1A	78					hippo signaling cascade|protein autophosphorylation	cytoplasm|nucleus	kinase activator activity|kinase binding|metal ion binding				0		all_hematologic(202;0.21)	Lung(101;0.235)			TCACAGACTTCTGTACAGAAG	0.338													3	29					0	0	0	0
GRIA2	2891	broad.mit.edu	37	4	158254442	158254442	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr4:158254442G>C	uc003ipm.3	+	8	1551	c.1092G>C	c.(1090-1092)CAG>CAC	p.Q364H	GRIA2_uc011cit.1_Missense_Mutation_p.Q317H|GRIA2_uc003ipl.3_Missense_Mutation_p.Q364H|GRIA2_uc003ipk.3_Missense_Mutation_p.Q317H|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	364	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	AGTTTGACCAGAATGGAAAAA	0.358													23	19					0	0	0	0
C5orf51	285636	broad.mit.edu	37	5	41904484	41904484	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:41904484C>G	uc003jmo.2	+	1	15	c.15C>G	c.(13-15)GTC>GTG	p.V5V		NM_175921	NP_787117	A6NDU8	CE051_HUMAN	hypothetical protein LOC285636	5											0						CGGCCGCAGTCTCTAGTGTGG	0.667													22	39					0	0	0	0
FBXO4	26272	broad.mit.edu	37	5	41934106	41934106	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:41934106C>G	uc003jmq.2	+	4	761	c.705C>G	c.(703-705)ATC>ATG	p.I235M	FBXO4_uc003jmp.2_Missense_Mutation_p.I235M|FBXO4_uc003jmr.2_Missense_Mutation_p.I235M	NM_012176	NP_036308	Q9UKT5	FBX4_HUMAN	F-box only protein 4 isoform 1	235					positive regulation of protein ubiquitination|protein polyubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|telomere maintenance|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	protein binding|protein homodimerization activity|ubiquitin-protein ligase activity			liver(1)	1		Lung NSC(810;4.15e-05)|Breast(839;0.00093)|Ovarian(839;0.00965)|Myeloproliferative disorder(839;0.0255)|all_neural(839;0.0604)				ACATTCTAATCTTATATTCAA	0.328													16	69					0	0	0	0
HSD17B4	3295	broad.mit.edu	37	5	118865666	118865666	+	Silent	SNP	A	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:118865666A>C	uc003ksj.2	+	21	1968	c.1845A>C	c.(1843-1845)ACA>ACC	p.T615T	HSD17B4_uc011cwg.1_Silent_p.T591T|HSD17B4_uc011cwh.1_Silent_p.T597T|HSD17B4_uc011cwi.1_Silent_p.T640T|HSD17B4_uc003ksk.3_Silent_p.T468T|HSD17B4_uc011cwj.1_Silent_p.T468T|HSD17B4_uc010jcn.1_Silent_p.T353T|HSD17B4_uc010jco.1_Missense_Mutation_p.H84P	NM_000414	NP_000405	P51659	DHB4_HUMAN	hydroxysteroid (17-beta) dehydrogenase 4	615	Enoyl-CoA hydratase 2.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3-hydroxyacyl-CoA dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity|estradiol 17-beta-dehydrogenase activity|isomerase activity|long-chain-enoyl-CoA hydratase activity|protein binding|sterol binding|sterol transporter activity			ovary(1)|pancreas(1)	2		all_cancers(142;0.0206)|Prostate(80;0.0322)		OV - Ovarian serous cystadenocarcinoma(64;0.000247)|Epithelial(69;0.000849)|all cancers(49;0.0122)	NADH(DB00157)	CAGCTAAGACACCCTCTGAGG	0.378													5	65					0	0	0	0
ZNF608	57507	broad.mit.edu	37	5	123974878	123974878	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:123974878G>C	uc003ktq.1	-	8	4603	c.4480C>G	c.(4480-4482)CAG>GAG	p.Q1494E	ZNF608_uc003ktr.1_RNA|ZNF608_uc003ktp.1_Missense_Mutation_p.Q189E	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1494						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		GCCACCTGCTGAGAGGCAACA	0.423													16	31					0	0	0	0
SEC24A	10802	broad.mit.edu	37	5	134060674	134060674	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:134060674G>A	uc003kzs.2	+	23	3460	c.3172G>A	c.(3172-3174)GAG>AAG	p.E1058K	SEC24A_uc011cxu.1_Missense_Mutation_p.E822K	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	1058					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCTAAGGGATGAGAGTCCAAT	0.318													23	43					0	0	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736827	140736827	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:140736827C>T	uc003ljq.1	+	1	2060	c.2060C>T	c.(2059-2061)TCG>TTG	p.S687L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGB2_uc003ljs.1_5'Flank|PCDHGA4_uc003ljp.1_Missense_Mutation_p.S687L|PCDHGB2_uc011dar.1_5'Flank	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	687	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGACGACTCGGGCCTCACA	0.617													25	40					0	0	0	0
MFAP3	4238	broad.mit.edu	37	5	153433244	153433244	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:153433244G>C	uc003lvf.2	+	3	1576	c.1060G>C	c.(1060-1062)GAT>CAT	p.D354H	MFAP3_uc010jib.2_Missense_Mutation_p.D354H|MFAP3_uc011ddb.1_Missense_Mutation_p.D208H	NM_001135037	NP_001128509	P55082	MFAP3_HUMAN	microfibrillar-associated protein 3 isoform 2	354	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	Renal(175;0.00488)	Lung NSC(249;0.00145)|all_lung(500;0.00226)|all_neural(177;0.122)|Breast(839;0.14)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)	OV - Ovarian serous cystadenocarcinoma(192;9.69e-06)|GBM - Glioblastoma multiforme(465;0.0201)		TAACTACAAAGATGGGGCATA	0.408													25	36					0	0	0	0
ATP10B	23120	broad.mit.edu	37	5	160049574	160049574	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:160049574C>G	uc003lym.1	-	14	2486	c.1639G>C	c.(1639-1641)GAT>CAT	p.D547H	ATP10B_uc010jit.1_5'Flank|ATP10B_uc003lyn.2_Missense_Mutation_p.D105H	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	547	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGGTTTTTATCTGGAGTTACA	0.507													45	65					0	0	0	0
ATP10B	23120	broad.mit.edu	37	5	160071214	160071214	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:160071214C>T	uc003lym.1	-	9	1646	c.799G>A	c.(799-801)GAG>AAG	p.E267K	ATP10B_uc003lyp.2_Missense_Mutation_p.E267K|ATP10B_uc011deg.1_Missense_Mutation_p.E311K|ATP10B_uc003lyo.2_Missense_Mutation_p.E239K	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	267	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGAAGACTCTCACAGCCAAAG	0.512													28	54					0	0	0	0
SLC17A3	10786	broad.mit.edu	37	6	25862469	25862469	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:25862469G>A	uc003nfi.3	-	3	405	c.295C>T	c.(295-297)CCT>TCT	p.P99S	SLC17A3_uc003nfk.3_Missense_Mutation_p.P99S|SLC17A3_uc011djz.1_Missense_Mutation_p.P99S|SLC17A3_uc011dka.1_Missense_Mutation_p.P99S	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	99					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						ACCTTTGCAGGAAGACTCTTT	0.383													17	14					0	0	0	0
OR2B6	26212	broad.mit.edu	37	6	27925541	27925541	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:27925541G>A	uc011dkx.1	+	1	523	c.523G>A	c.(523-525)GAT>AAT	p.D175N		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTATGTGATAGATCACTTTCT	0.483													51	39					0	0	0	0
DHX16	8449	broad.mit.edu	37	6	30624384	30624384	+	Silent	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:30624384G>C	uc003nqz.2	-	14	2513	c.2301C>G	c.(2299-2301)CTC>CTG	p.L767L	DHX16_uc003nqy.2_Silent_p.L286L|DHX16_uc011dmo.1_Silent_p.L707L	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	767	Helicase C-terminal.				mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CTAAGCTCTTGAGCAGCAACA	0.557													73	102					0	0	0	0
CFB	629	broad.mit.edu	37	6	31915793	31915793	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:31915793T>A	uc003nyj.3	+	6	1110	c.832T>A	c.(832-834)TCA>ACA	p.S278T	CFB_uc011dor.1_Missense_Mutation_p.S780T|CFB_uc003nyi.2_Missense_Mutation_p.S278T	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	278	VWFA.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GCTAGATGGATCAGACAGCAT	0.537													30	42					0	0	0	0
TAPBP	6892	broad.mit.edu	37	6	33272808	33272808	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:33272808G>A	uc003odx.1	-	4	997	c.826C>T	c.(826-828)CCA>TCA	p.P276S	TAPBP_uc010jus.1_Missense_Mutation_p.P294S|TAPBP_uc003ody.2_Missense_Mutation_p.P276S|TAPBP_uc003odz.2_Missense_Mutation_p.P276S|TAPBP_uc010jut.1_Missense_Mutation_p.P189S|TAPBP_uc011drc.1_Missense_Mutation_p.P276S	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	276	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						TGCAGGTATGGCAGGTGTATG	0.587													108	138					0	0	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34835329	34835329	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:34835329G>A	uc003oju.3	+	17	3888	c.3654G>A	c.(3652-3654)GAG>GAA	p.E1218E	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_RNA	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	1218										ovary(3)	3						TGCAAGCAGAGGAACTGACCC	0.547													40	89					0	0	0	0
LHFPL5	222662	broad.mit.edu	37	6	35773513	35773513	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:35773513G>A	uc003olg.1	+	1	443	c.66G>A	c.(64-66)TCG>TCA	p.S22S		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	22						integral to membrane				skin(1)	1						TGCGGAACTCGCGAGCCGTGG	0.617													30	122					0	0	0	0
ZNF318	24149	broad.mit.edu	37	6	43307216	43307216	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:43307216G>C	uc003oux.2	-	10	4598	c.4520C>G	c.(4519-4521)TCA>TGA	p.S1507*	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1507	Pro-rich.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TGGCTGTGCTGAGGCCATGAT	0.532													20	45					0	0	0	0
ELOVL5	60481	broad.mit.edu	37	6	53138060	53138060	+	Silent	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:53138060A>G	uc003pbq.1	-	6	1027	c.579T>C	c.(577-579)CGT>CGC	p.R193R	ELOVL5_uc003pbr.1_Silent_p.R193R|ELOVL5_uc011dwx.1_Silent_p.R220R|ELOVL5_uc003pbs.1_Intron|ELOVL5_uc003pbt.3_5'Flank	NM_021814	NP_068586	Q9NYP7	ELOV5_HUMAN	elongation of very long chain fatty acids-like	193				YFGATLNSFIHVLMYSYYGLSSVPSMRPYLWWKKYITQGQL LQFVLTIIQTSCGVIWPCTFPLGWLYFQIGYMISLIALFTN FYIQTYNKKGASRR -> SVCADNHPDQLRGHLAVHIPSWL VVFPDWIHDFPDCSLHKLLHSDLQQERGLPKERPPEGPPEW VHGCCEWTHQQLFTPGKQCEAKEAAEGLKSKN (in Ref. 4; BAD93035).	fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Lung NSC(77;0.116)					AGAGGTATGGACGCATGGAAG	0.502													3	119					0	0	0	0
FAM83B	222584	broad.mit.edu	37	6	54792428	54792428	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:54792428C>A	uc003pck.2	+	4	848	c.732C>A	c.(730-732)TAC>TAA	p.Y244*		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	244										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ACGGTTCTTACAGGTAAGATC	0.299													44	83					2.74695e-27	2.9386e-27	1	0
KHDC1	80759	broad.mit.edu	37	6	73951446	73951446	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:73951446C>G	uc003pgo.2	-	5	1021	c.520G>C	c.(520-522)GAG>CAG	p.E174Q	KHDC1_uc011dyl.1_Intron|KHDC1_uc003pgn.3_Missense_Mutation_p.E101Q	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	174						integral to membrane	RNA binding			skin(1)	1						TCCAGCATCTCCAGGCCTGCA	0.582													27	35					0	0	0	0
ME1	4199	broad.mit.edu	37	6	83921771	83921771	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:83921771G>A	uc003pjy.2	-	14	1697	c.1591C>T	c.(1591-1593)CCT>TCT	p.P531S	ME1_uc011dzb.1_Missense_Mutation_p.P456S|ME1_uc011dzc.1_Missense_Mutation_p.P365S	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	531					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TGCGGTTCAGGATAAACTGTG	0.358													32	56					0	0	0	0
MAP3K7	6885	broad.mit.edu	37	6	91228236	91228236	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:91228236C>G	uc003pnz.1	-	16	1732	c.1570G>C	c.(1570-1572)GAA>CAA	p.E524Q	MAP3K7_uc003pny.1_Missense_Mutation_p.E61Q|MAP3K7_uc003poa.1_Intron|MAP3K7_uc003pob.1_Missense_Mutation_p.E497Q|MAP3K7_uc003poc.1_Intron	NM_145331	NP_663304	O43318	M3K7_HUMAN	mitogen-activated protein kinase kinase kinase 7	524					activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|histone H3 acetylation|I-kappaB phosphorylation|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytosol|endosome membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)	6		all_cancers(76;6.4e-08)|Acute lymphoblastic leukemia(125;1.43e-09)|Prostate(29;9.32e-09)|all_hematologic(105;3.69e-06)|all_epithelial(107;0.000187)|Ovarian(999;0.0164)		OV - Ovarian serous cystadenocarcinoma(136;2.05e-11)|all cancers(137;3.25e-11)|GBM - Glioblastoma multiforme(226;0.0416)|BRCA - Breast invasive adenocarcinoma(108;0.0429)		CAATGCTGTTCAAACACTGCC	0.284													11	24					0	0	0	0
HACE1	57531	broad.mit.edu	37	6	105281023	105281023	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:105281023C>T	uc003pqu.1	-	6	705	c.428G>A	c.(427-429)CGG>CAG	p.R143Q	HACE1_uc010kcy.1_5'UTR|HACE1_uc010kcz.1_Missense_Mutation_p.R143Q	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	143	ANK 3.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		TAGTTCTGTCCGCCCATTCAC	0.423													25	75					0	0	0	0
IFNGR1	3459	broad.mit.edu	37	6	137540429	137540429	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:137540429C>G	uc003qho.2	-	1	139	c.36G>C	c.(34-36)CAG>CAC	p.Q12H	IFNGR1_uc011edm.1_5'Flank|IFNGR1_uc011edn.1_5'UTR	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	12					regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	TGCTCACACCCTGCATGACAA	0.692													12	21					0	0	0	0
GPR126	57211	broad.mit.edu	37	6	142689043	142689043	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:142689043C>G	uc010khc.2	+	3	852	c.441C>G	c.(439-441)ATC>ATG	p.I147M	GPR126_uc010khd.2_Missense_Mutation_p.I147M|GPR126_uc010khe.2_Missense_Mutation_p.I147M|GPR126_uc010khf.2_Missense_Mutation_p.I147M|GPR126_uc003qix.2_Missense_Mutation_p.I147M	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	147	CUB.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		CCAGCTACATCAGAGGTATGT	0.408													17	33					0	0	0	0
LATS1	9113	broad.mit.edu	37	6	149983190	149983190	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:149983190G>C	uc003qmu.1	-	8	3616	c.3068C>G	c.(3067-3069)TCT>TGT	p.S1023C	LATS1_uc010kif.1_Missense_Mutation_p.S918C	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	1023	AGC-kinase C-terminal.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		GTATGAAGCAGACTGCTGTCT	0.388													14	107					0	0	0	0
LATS1	9113	broad.mit.edu	37	6	150001095	150001095	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:150001095C>G	uc003qmu.1	-	5	3057	c.2509G>C	c.(2509-2511)GAT>CAT	p.D837H	LATS1_uc010kif.1_Missense_Mutation_p.D732H|LATS1_uc003qmv.1_Missense_Mutation_p.D837H	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	837	Protein kinase.				cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		CCATCACGATCAATCAAAATA	0.363													29	49					0	0	0	0
MTRF1L	54516	broad.mit.edu	37	6	153311053	153311053	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:153311053C>G	uc003qpi.3	-	7	1225	c.1120G>C	c.(1120-1122)GAA>CAA	p.E374Q	MTRF1L_uc003qpl.3_3'UTR|MTRF1L_uc011efa.1_Missense_Mutation_p.E338Q|MTRF1L_uc003qpj.3_Missense_Mutation_p.E232Q|MTRF1L_uc003qpk.3_3'UTR	NM_019041	NP_061914	Q9UGC7	RF1ML_HUMAN	mitochondrial translational release factor	374						mitochondrion	translation release factor activity, codon specific				0		Ovarian(120;0.125)		OV - Ovarian serous cystadenocarcinoma(155;4.24e-10)|BRCA - Breast invasive adenocarcinoma(81;0.0888)		GAAATAATTTCTACTAAAGAT	0.333													37	80					0	0	0	0
PDGFA	5154	broad.mit.edu	37	7	552064	552064	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:552064C>G	uc003sir.2	-	3	1032	c.189G>C	c.(187-189)CTG>CTC	p.L63L	PDGFA_uc003sis.2_Silent_p.L63L|PDGFA_uc003sit.1_Silent_p.L77L	NM_002607	NP_002598	P04085	PDGFA_HUMAN	platelet-derived growth factor alpha isoform 1	63					actin cytoskeleton organization|angiogenesis|cell projection assembly|embryo development|hair follicle development|lung alveolus development|negative chemotaxis|negative regulation of phosphatidylinositol biosynthetic process|negative regulation of platelet activation|organ morphogenesis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of DNA replication|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of MAP kinase activity|positive regulation of mesenchymal cell proliferation|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein kinase B signaling cascade|regulation of actin cytoskeleton organization|regulation of branching involved in salivary gland morphogenesis by epithelial-mesenchymal signaling|regulation of peptidyl-tyrosine phosphorylation|regulation of smooth muscle cell migration|skin development	cell surface|endoplasmic reticulum lumen|extracellular space|Golgi membrane|microvillus|platelet alpha granule lumen	collagen binding|eukaryotic cell surface binding|growth factor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein heterodimerization activity|protein homodimerization activity				0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|Epithelial(4;1.1e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.7e-17)|all cancers(6;4.89e-15)		CGTGAGCTCTCAGGCTGGTGT	0.597													26	79					0	0	0	0
LOC389458	389458	broad.mit.edu	37	7	5112576	5112576	+	Missense_Mutation	SNP	G	C	C	rs140476131		TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:5112576G>C	uc003snr.2	+	8	772	c.459G>C	c.(457-459)GAG>GAC	p.E153D	LOC389458_uc010kst.2_Missense_Mutation_p.E48Q					Synthetic construct DNA, clone: pF1KB3788, Homo sapiens RBAK gene for RB-associated KRAB repressor, complete cds, without stop codon, in Flexi system.												0						CGGAGACGGAGAGCTGCGGGC	0.657													32	99					0	0	0	0
PMS2	5395	broad.mit.edu	37	7	6029573	6029573	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:6029573G>C	uc003spl.2	-	10	1089	c.1002C>G	c.(1000-1002)ATC>ATG	p.I334M	PMS2_uc003spj.2_Missense_Mutation_p.I228M|PMS2_uc003spk.2_Missense_Mutation_p.I199M|PMS2_uc011jwl.1_Missense_Mutation_p.I199M|PMS2_uc010ktg.2_Missense_Mutation_p.I23M|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Missense_Mutation_p.I334M	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	334					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		GAGTAACATTGATATCAACGC	0.239			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				36	35					0	0	0	0
NOD1	10392	broad.mit.edu	37	7	30492447	30492447	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:30492447C>T	uc003tav.2	-	6	1109	c.586G>A	c.(586-588)GAG>AAG	p.E196K	NOD1_uc010kvs.2_Intron	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	196	NACHT.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						AAGATGGTCTCACCCTGCTCA	0.627													42	13					0	0	0	0
AUTS2	26053	broad.mit.edu	37	7	70227855	70227855	+	Splice_Site	SNP	G	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:70227855G>T	uc003tvw.3	+	7	1486	c.743_splice	c.e7-1	p.D248_splice	AUTS2_uc003tvx.3_Splice_Site_p.D248_splice	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1											ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CTCCCATGCAGATCCGGAGTT	0.522													44	225					2.24722e-20	2.39011e-20	1	0
ARPC1B	10095	broad.mit.edu	37	7	98988657	98988657	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:98988657G>A	uc003upz.2	+	6	731	c.642G>A	c.(640-642)GGG>GGA	p.G214G	ARPC1B_uc003uqa.2_Silent_p.G214G|ARPC1B_uc003uqb.2_Silent_p.G214G|ARPC1B_uc003uqc.2_Silent_p.G214G|ARPC1B_uc003uqd.2_Silent_p.G26G	NM_005720	NP_005711	O15143	ARC1B_HUMAN	actin related protein 2/3 complex subunit 1B	214					cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton				0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CAGCCAGCGGGAGCCGCGTGG	0.632													16	47					0	0	0	0
ZNF394	84124	broad.mit.edu	37	7	99097680	99097680	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:99097680C>T	uc003uqs.2	-	1	198	c.37G>A	c.(37-39)GAC>AAC	p.D13N	ZNF394_uc003uqt.2_5'UTR|ZNF394_uc003uqu.1_Missense_Mutation_p.D13N	NM_032164	NP_115540	Q53GI3	ZN394_HUMAN	zinc finger protein 394	13					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					AACTCGGCGTCACTGCCGCGC	0.597													52	48					0	0	0	0
C7orf51	222950	broad.mit.edu	37	7	100087172	100087172	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:100087172G>A	uc003uvd.1	+	4	1987	c.1828G>A	c.(1828-1830)GCC>ACC	p.A610T	C7orf51_uc003uve.1_Missense_Mutation_p.A392T	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	610										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCACGTCATCGCCAGCGCAGG	0.637													35	95					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100679095	100679095	+	Silent	SNP	G	C	C	rs149059191	byFrequency	TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:100679095G>C	uc003uxp.1	+	3	4451	c.4398G>C	c.(4396-4398)CCG>CCC	p.P1466P	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1466	Extracellular (Potential).|Ser-rich.|22.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCAACACGCCGGTGGCCAATT	0.478													161	432					0	0	0	0
LAMB1	3912	broad.mit.edu	37	7	107601753	107601753	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:107601753C>T	uc003vew.2	-	17	2342	c.2007G>A	c.(2005-2007)CCG>CCA	p.P669P	LAMB1_uc003vev.2_Silent_p.P693P|LAMB1_uc003vex.2_Silent_p.P669P	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	669	Laminin IV type B.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CAAAGCACACCGGCCGAGGAA	0.463													9	55					0	0	0	0
OR2A14	135941	broad.mit.edu	37	7	143826410	143826410	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:143826410G>A	uc011kua.1	+	1	205	c.205G>A	c.(205-207)GAC>AAC	p.D69N		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GGCCATTGTTGACATATCCTA	0.463													79	140					0	0	0	0
KCNH2	3757	broad.mit.edu	37	7	150648119	150648119	+	Missense_Mutation	SNP	G	A	A	rs79624542		TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:150648119G>A	uc003wic.2	-	8	2048	c.2035C>T	c.(2035-2037)CGG>TGG	p.R679W	KCNH2_uc003wib.2_Missense_Mutation_p.R339W|KCNH2_uc011kux.1_Missense_Mutation_p.R583W|KCNH2_uc003wid.2_Missense_Mutation_p.R339W|KCNH2_uc003wie.2_Missense_Mutation_p.R679W	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	679	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	TCCCGCACCCGCAGCATCTGT	0.632													27	32					0	0	0	0
GALNTL5	168391	broad.mit.edu	37	7	151711769	151711769	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:151711769C>G	uc003wkp.2	+	8	1290	c.1067C>G	c.(1066-1068)TCT>TGT	p.S356C	GALNTL5_uc003wkq.2_Missense_Mutation_p.S107C|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.S245C	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	356	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		ATCCCCTGCTCTCGAGTAGGA	0.413													34	52					0	0	0	0
VIPR2	7434	broad.mit.edu	37	7	158823439	158823439	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:158823439C>G	uc003woh.2	-	13	1371	c.1185G>C	c.(1183-1185)CCG>CCC	p.P395P	VIPR2_uc010lqx.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	395	Cytoplasmic (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		CGGACGGGGTCGGGCACCGGC	0.706													4	7					0	0	0	0
FLJ10661	286042	broad.mit.edu	37	8	8088411	8088411	+	RNA	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:8088411A>G	uc011kwt.1	+	2		c.275A>G			FLJ10661_uc010lrq.2_RNA|FLJ10661_uc003wsf.3_RNA	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						GAGCTGCTGCAGGATATTTTG	0.488													3	14					0	0	0	0
MTMR7	9108	broad.mit.edu	37	8	17228648	17228648	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:17228648G>C	uc003wxm.2	-	3	447	c.208C>G	c.(208-210)CTG>GTG	p.L70V		NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	70							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CGAATCAGCAGAGGGCATCCG	0.453													6	94					0	0	0	0
MTUS1	57509	broad.mit.edu	37	8	17613105	17613105	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:17613105G>A	uc003wxv.2	-	2	686	c.212C>T	c.(211-213)TCT>TTT	p.S71F	MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.S71F|MTUS1_uc010lsz.2_Missense_Mutation_p.S71F	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	71						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		AAGGCTTAAAGAAATATTTTC	0.388													6	76					0	0	0	0
SLC39A14	23516	broad.mit.edu	37	8	22262337	22262337	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:22262337C>G	uc003xbq.3	+	2	289	c.114C>G	c.(112-114)ATC>ATG	p.I38M	SLC39A14_uc011kzg.1_Missense_Mutation_p.I38M|SLC39A14_uc003xbp.3_Missense_Mutation_p.I38M|SLC39A14_uc011kzh.1_Missense_Mutation_p.I38M	NM_001128431	NP_001121903	Q15043	S39AE_HUMAN	solute carrier family 39 (zinc transporter),	38	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lamellipodium|plasma membrane	zinc ion transmembrane transporter activity				0				Colorectal(74;0.019)|COAD - Colon adenocarcinoma(73;0.0731)		CACCAGCTATCAGCGCTGCCT	0.602													3	76					0	0	0	0
ANK1	286	broad.mit.edu	37	8	41545690	41545690	+	Silent	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:41545690G>C	uc003xok.2	-	35	4326	c.4242C>G	c.(4240-4242)CTC>CTG	p.L1414L	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.L730L|ANK1_uc003xoi.2_Silent_p.L1414L|ANK1_uc003xoj.2_Silent_p.L1414L|ANK1_uc003xol.2_Silent_p.L1414L|ANK1_uc003xom.2_Silent_p.L1455L	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1414	55 kDa regulatory domain.|Death.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			AGCTGAGACCGAGGTGCTCTG	0.512													76	43					0	0	0	0
NSMAF	8439	broad.mit.edu	37	8	59522253	59522253	+	Silent	SNP	T	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:59522253T>C	uc003xtt.2	-	10	811	c.597A>G	c.(595-597)AAA>AAG	p.K199K	NSMAF_uc011lee.1_Silent_p.K230K|NSMAF_uc003xtu.2_Silent_p.K199K	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	199	GRAM.				ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				CCATTTCTGCTTTGCATTCCA	0.428													57	32					0	0	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68208741	68208741	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:68208741G>A	uc003xxo.1	-	5	954	c.564C>T	c.(562-564)CTC>CTT	p.L188L		NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	188					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TCTGATTGATGAGATTTTTGC	0.378													42	101					0	0	0	0
SULF1	23213	broad.mit.edu	37	8	70539481	70539481	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:70539481G>C	uc010lza.1	+	16	2604	c.1887G>C	c.(1885-1887)GAG>GAC	p.E629D	SULF1_uc003xyd.2_Missense_Mutation_p.E629D|SULF1_uc003xye.2_Missense_Mutation_p.E629D|SULF1_uc003xyf.2_Missense_Mutation_p.E629D|SULF1_uc003xyg.2_Missense_Mutation_p.E629D|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_5'Flank	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	629					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			TCCATTGTGAGAGAGAACTGT	0.388													8	64					0	0	0	0
CNGB3	54714	broad.mit.edu	37	8	87645092	87645092	+	Missense_Mutation	SNP	C	T	T	rs147876778	byFrequency	TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:87645092C>T	uc003ydx.2	-	11	1254	c.1208G>A	c.(1207-1209)CGA>CAA	p.R403Q	CNGB3_uc010maj.2_Missense_Mutation_p.R265Q	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	403	Cytoplasmic (Potential).		R -> Q (in macular degeneration).		signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						AATTAAAGTTCGAACTGCCCA	0.328													18	42					0	0	0	0
ESRP1	54845	broad.mit.edu	37	8	95653588	95653588	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:95653588C>T	uc003ygq.3	+	1	225	c.42C>T	c.(40-42)ATC>ATT	p.I14I	ESRP1_uc003ygr.3_Silent_p.I14I|ESRP1_uc003ygs.3_Silent_p.I14I|ESRP1_uc003ygt.3_Silent_p.I14I|ESRP1_uc003ygu.3_Silent_p.I14I	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	14					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TTTTTGGGATCACTGCTGGGG	0.587													10	88					0	0	0	0
ABRA	137735	broad.mit.edu	37	8	107782023	107782023	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:107782023C>T	uc003ymm.3	-	1	450	c.396G>A	c.(394-396)GAG>GAA	p.E132E		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	132					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			CAGCATCCCTCTCGTACCTGT	0.542													62	155					0	0	0	0
KCNV1	27012	broad.mit.edu	37	8	110980590	110980590	+	Silent	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:110980590G>A	uc003ynr.3	-	3	1572	c.1230C>T	c.(1228-1230)TTC>TTT	p.F410F	KCNV1_uc010mcw.2_Silent_p.F410F	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	410	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			ATATACACATGAAGGCCACGA	0.478													39	123					0	0	0	0
FAM83A	84985	broad.mit.edu	37	8	124219708	124219708	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:124219708A>C	uc003ypv.2	+	5	3099	c.1085A>C	c.(1084-1086)CAC>CCC	p.H362P	FAM83A_uc003ypw.2_Intron|FAM83A_uc003ypy.2_Intron|FAM83A_uc003ypx.2_Missense_Mutation_p.H362P|FAM83A_uc003ypz.2_Intron	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	362	Pro-rich.									ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			GCGGCCCCACACCCGCCTCCA	0.766													5	13					0	0	0	0
TRIB1	10221	broad.mit.edu	37	8	126445719	126445719	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:126445719G>A	uc003yrx.2	+	2	1103	c.521G>A	c.(520-522)CGG>CAG	p.R174Q	TRIB1_uc011lis.1_Missense_Mutation_p.R8Q|TRIB1_uc010mdn.2_5'Flank	NM_025195	NP_079471	Q96RU8	TRIB1_HUMAN	G-protein-coupled receptor induced protein	174	Protein kinase.				JNK cascade|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|regulation of MAP kinase activity|response to lipopolysaccharide	cytoplasm|nucleus	ATP binding|mitogen-activated protein kinase kinase binding|protein kinase activity|protein kinase inhibitor activity|transcription factor binding|ubiquitin protein ligase binding|ubiquitin-protein ligase regulator activity			lung(1)	1	all_hematologic(1;4.97e-05)|Ovarian(258;0.00167)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)			GTGCGAAGCCGGAAGAGGCTG	0.572													94	202					0	0	0	0
PUF60	22827	broad.mit.edu	37	8	144902849	144902849	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:144902849G>C	uc003yzs.2	-	5	399	c.335C>G	c.(334-336)TCA>TGA	p.S112*	PUF60_uc003yzr.2_Intron|PUF60_uc003yzt.2_Intron|PUF60_uc003yzq.2_Nonsense_Mutation_p.S69*|PUF60_uc003yzu.1_Nonsense_Mutation_p.S101*	NM_078480	NP_510965	Q9UHX1	PUF60_HUMAN	poly-U binding splicing factor 60KDa isoform a	112	Inhibits homodimerization.|Inhibits transcriptional repression, interaction with ERCC3 and apoptosis induction.				apoptosis|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleus|ribonucleoprotein complex	DNA binding|nucleotide binding|protein binding|RNA binding				0	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;6.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			TTGCAAAGGTGAGAGAGGATC	0.547													78	246					0	0	0	0
PLEC	5339	broad.mit.edu	37	8	144990596	144990596	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:144990596C>G	uc003zaf.1	-	32	13974	c.13804G>C	c.(13804-13806)GAG>CAG	p.E4602Q	PLEC_uc003zab.1_Missense_Mutation_p.E4465Q|PLEC_uc003zac.1_Missense_Mutation_p.E4469Q|PLEC_uc003zad.2_Missense_Mutation_p.E4465Q|PLEC_uc003zae.1_Missense_Mutation_p.E4433Q|PLEC_uc003zag.1_Missense_Mutation_p.E4443Q|PLEC_uc003zah.2_Missense_Mutation_p.E4451Q|PLEC_uc003zaj.2_Missense_Mutation_p.E4492Q	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	4602	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCGGCAGCCTCCAGCAGCCGC	0.677													57	151					0	0	0	0
PARP10	84875	broad.mit.edu	37	8	145052088	145052088	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:145052088G>C	uc003zal.3	-	10	2826	c.2718C>G	c.(2716-2718)TTC>TTG	p.F906L	PLEC_uc003zaj.2_5'Flank|PARP10_uc003zak.3_Missense_Mutation_p.F603L|PARP10_uc011lku.1_Missense_Mutation_p.F918L|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.F897L	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	906	PARP catalytic.|Myc binding.					Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCGGCCGCAGAAGCTGCGGT	0.721													7	38					0	0	0	0
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:20414343A>G	uc003zoe.2	-	5	760	c.501T>C	c.(499-501)AGT>AGC	p.S167S	MLLT3_uc011lne.1_Silent_p.S135S|MLLT3_uc011lnf.1_Silent_p.S164S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Missense_Mutation_p.V129A	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	167	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctactgctgctgc	0.139			T	MLL	ALL								4	53					0	0	0	0
NTRK2	4915	broad.mit.edu	37	9	87636301	87636301	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:87636301C>G	uc004aoa.1	+	20	3356	c.2418C>G	c.(2416-2418)CTC>CTG	p.L806L	NTRK2_uc004anz.1_Silent_p.L822L	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	806	Protein kinase.|Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						TCCATACCCTCCTTCAGAACT	0.597										TSP Lung(25;0.17)			88	16					0	0	0	0
DAB2IP	153090	broad.mit.edu	37	9	124530800	124530800	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:124530800C>G	uc004bln.2	+	10	1772	c.1703C>G	c.(1702-1704)TCC>TGC	p.S568C	DAB2IP_uc004blo.2_Missense_Mutation_p.S472C|DAB2IP_uc004blp.2_Missense_Mutation_p.S23C	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	596					activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						CTGGAGATCTCCAACCCCGAG	0.587													5	141					0	0	0	0
OR1B1	347169	broad.mit.edu	37	9	125391590	125391590	+	Silent	SNP	T	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:125391590T>G	uc011lyz.1	-	1	225	c.225A>C	c.(223-225)CTA>CTC	p.L75L		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TAACTGTGGATAGCCCCATGT	0.522													48	10					0	0	0	0
TTF1	7270	broad.mit.edu	37	9	135266215	135266215	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:135266215C>G	uc004cbl.2	-	7	2043	c.1991G>C	c.(1990-1992)AGA>ACA	p.R664T	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Missense_Mutation_p.R149T	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	664	Myb-like 2.				negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		ACCACGATTTCTTTCTGTAGA	0.358													107	26					0	0	0	0
RNF208	727800	broad.mit.edu	37	9	140114909	140114909	+	Silent	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:140114909C>T	uc004clz.1	-	1	867	c.756G>A	c.(754-756)CGG>CGA	p.R252R		NM_031297	NP_112587	Q9H0X6	RN208_HUMAN	ring finger protein 208	252							zinc ion binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		ACAGTGGGTTCCGCACGTGGC	0.701													17	8					0	0	0	0
EXD3	54932	broad.mit.edu	37	9	140249213	140249213	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:140249213T>C	uc004cmp.2	-	9	966	c.770A>G	c.(769-771)AAC>AGC	p.N257S	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_5'UTR|EXD3_uc004cmq.1_Intron|EXD3_uc010ncg.1_Missense_Mutation_p.N196S	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	257					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						AATGGCCGCGTTGGGACACAG	0.697													28	5					0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070139	141070139	+	Missense_Mutation	SNP	C	T	T	rs143443709	by1000genomes	TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:141070139C>T	uc004com.2	+	3	298	c.37C>T	c.(37-39)CTC>TTC	p.L13F	TUBBP5_uc010ncq.2_Missense_Mutation_p.L127F					RecName: Full=Putative tubulin beta-4q chain;												0						CGGGCAGGTCCTCAGGCCAGA	0.667													7	118					0	0	0	0
Unknown	0	broad.mit.edu	37	X	221851	221851	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:221851C>T	uc004cpd.1	-	4	1026	c.415G>A	c.(415-417)GAG>AAG	p.E139K	uc004cpe.1_Missense_Mutation_p.E252K	NM_012227	NP_036359			pseudoautosomal GTP-binding protein-like																		ACTGTGGCCTCCTTATACAGC	0.512													37	12					0	0	0	0
PPP2R3B	28227	broad.mit.edu	37	X	299609	299609	+	Silent	SNP	C	G	G			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:299609C>G	uc004cpg.2	-	11	1575	c.1374G>C	c.(1372-1374)CTG>CTC	p.L458L	PPP2R3B_uc004cpf.2_Silent_p.L59L	NM_013239	NP_037371	Q9Y5P8	P2R3B_HUMAN	protein phosphatase 2, regulatory subunit B'',	458					cell cycle arrest|protein dephosphorylation	nucleus|protein phosphatase type 2A complex	calcium ion binding|protein phosphatase type 2A regulator activity|protein serine/threonine phosphatase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGCAGCGCTTCAGGTCCTGCA	0.622													26	111					0	0	0	0
USP11	8237	broad.mit.edu	37	X	47098752	47098752	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:47098752G>C	uc004dhp.2	+	3	418	c.418G>C	c.(418-420)GAG>CAG	p.E140Q	USP11_uc004dhq.2_5'UTR	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	140	DUSP.				protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						CCCCACAGATGAGATAAACTG	0.562													17	5					0	0	0	0
ARHGEF9	23229	broad.mit.edu	37	X	62917013	62917013	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:62917013G>C	uc004dvl.2	-	4	1392	c.553C>G	c.(553-555)CTA>GTA	p.L185V	ARHGEF9_uc004dvj.1_Missense_Mutation_p.L74V|ARHGEF9_uc004dvk.1_Missense_Mutation_p.L47V|ARHGEF9_uc011mos.1_Missense_Mutation_p.L164V|ARHGEF9_uc004dvm.1_Missense_Mutation_p.L164V|ARHGEF9_uc011mot.1_Missense_Mutation_p.L132V|ARHGEF9_uc004dvn.2_Missense_Mutation_p.L192V	NM_015185	NP_056000	O43307	ARHG9_HUMAN	Cdc42 guanine exchange factor 9	185	DH.				apoptosis|induction of apoptosis by extracellular signals|ion transmembrane transport|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(5)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	8						ACGTGCTCTAGGAAGCAGGGT	0.458													16	2					0	0	0	0
ITGB1BP2	26548	broad.mit.edu	37	X	70524109	70524109	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:70524109C>T	uc004dzr.1	+	9	741	c.712C>T	c.(712-714)CCA>TCA	p.P238S	BCYRN1_uc011mpt.1_Intron|ITGB1BP2_uc004dzs.1_Missense_Mutation_p.P220S	NM_012278	NP_036410	Q9UKP3	ITBP2_HUMAN	integrin beta 1 binding protein 2	238	CS.				muscle organ development|signal transduction		SH3 domain binding			ovary(1)	1	Renal(35;0.156)					TGGCCAGATTCCACTTCCTGC	0.473													46	13					0	0	0	0
ACRC	93953	broad.mit.edu	37	X	70814205	70814205	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:70814205G>C	uc004eae.2	+	5	666	c.165G>C	c.(163-165)AGG>AGC	p.R55S	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	55						nucleus				ovary(3)	3	Renal(35;0.156)					TCCAGTCAAGGAGTGGTGACA	0.403													32	8					0	0	0	0
OCRL	4952	broad.mit.edu	37	X	128692624	128692624	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:128692624G>C	uc004euq.2	+	7	619	c.454G>C	c.(454-456)GAA>CAA	p.E152Q	OCRL_uc004eur.2_Missense_Mutation_p.E152Q	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	152					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						TCTTGGATTTGAAGACAATTT	0.408													3	52					0	0	0	0
HDGF	3068	broad.mit.edu	37	1	156713644	156713648	+	Frame_Shift_Del	DEL	TGCCT	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:156713644_156713648delTGCCT	uc001fpy.3	-	5	834_838	c.512_516delAGGCA	c.(511-516)GAGGCAfs	p.E171fs	MRPL24_uc001fpw.1_5'Flank|MRPL24_uc001fpx.1_5'Flank|HDGF_uc009wsd.2_Frame_Shift_Del_p.E139fs|HDGF_uc001fpz.3_Frame_Shift_Del_p.E164fs|HDGF_uc009wse.2_Frame_Shift_Del_p.E187fs|HDGF_uc010phr.1_Frame_Shift_Del_p.E194fs|HDGF_uc009wsf.2_Frame_Shift_Del_p.E139fs|HDGF_uc009wsg.2_Frame_Shift_Del_p.E171fs	NM_004494	NP_004485	P51858	HDGF_HUMAN	hepatoma-derived growth factor isoform a	171_172	Glu-rich.				cell proliferation|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	DNA binding|growth factor activity|heparin binding|nucleotide binding			lung(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)	Breast(1374;0.198)		Colorectal(1306;0.018)		CAGGGTTTTCTGCCTCCTTGGGACG	0.605													---	---	---							
LYST	1130	broad.mit.edu	37	1	235964315	235964327	+	Frame_Shift_Del	DEL	TTCCCCTTGAGTG	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr1:235964315_235964327delTTCCCCTTGAGTG	uc001hxj.2	-	9	3958_3970	c.3783_3795delCACTCAAGGGGAA	c.(3781-3795)CTCACTCAAGGGGAAfs	p.L1261fs	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Frame_Shift_Del_p.L1261fs	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1261_1265					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			GATAAATTATTTCCCCTTGAGTGAGGTTTTCGA	0.366									Chediak-Higashi_syndrome				---	---	---							
TM9SF3	56889	broad.mit.edu	37	10	98336475	98336475	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:98336475delT	uc001kmm.3	-	2	431	c.214delA	c.(214-216)AGTfs	p.S72fs	TM9SF3_uc010qot.1_Frame_Shift_Del_p.S72fs	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	72						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		TGACTGATACTTTTTTTTGAC	0.363													---	---	---							
Unknown	0	broad.mit.edu	37	10	134206066	134206068	+	IGR	DEL	TGG	-	-	rs72458419		TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr10:134206066_134206068delTGG								LRRC27 (11056 upstream) : PWWP2B (4634 downstream)																							gtggtggtaatggtgatgatggt	0.000													---	---	---							
PDE3A	5139	broad.mit.edu	37	12	20782960	20782977	+	In_Frame_Del	DEL	AACTGCCAAACAAAGCCT	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr12:20782960_20782977delAACTGCCAAACAAAGCCT	uc001reh.1	+	6	1681_1698	c.1659_1676delAACTGCCAAACAAAGCCT	c.(1657-1677)ACAACTGCCAAACAAAGCCTA>ACA	p.TAKQSL554del		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	554_559					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CTGCTGACACAACTGCCAAACAAAGCCTAGGTTCTCAC	0.500													---	---	---							
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													---	---	---							
MYH10	4628	broad.mit.edu	37	17	8415820	8415822	+	In_Frame_Del	DEL	TTC	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:8415820_8415822delTTC	uc002gll.2	-	22	2902_2904	c.2806_2808delGAA	c.(2806-2808)GAAdel	p.E936del	MYH10_uc002glm.2_In_Frame_Del_p.E967del|MYH10_uc010cnx.2_In_Frame_Del_p.E945del	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	936	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						TTTGGTTTCTTTCTTCTTCTTCT	0.350													---	---	---							
Unknown	0	broad.mit.edu	37	17	42025266	42025267	+	IGR	INS	-	A	A	rs112096102		TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:42025266_42025267insA								PPY (5433 upstream) : PYY (4842 downstream)																							gactccgtgtcaaaaaaaaaaa	0.257													---	---	---							
AKAP1	8165	broad.mit.edu	37	17	55183460	55183460	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr17:55183460delA	uc002iux.2	+	2	866	c.635delA	c.(634-636)GAAfs	p.E212fs	AKAP1_uc010wnl.1_Frame_Shift_Del_p.E212fs|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Frame_Shift_Del_p.E212fs	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	212					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					GTGTTGGGGGAAAAGGTGCTT	0.587													---	---	---							
Unknown	0	broad.mit.edu	37	19	34109532	34109533	+	IGR	INS	-	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:34109532_34109533insT								PEPD (96731 upstream) : CHST8 (3328 downstream)																							tcttcctcttctcttcttcttc	0.000													---	---	---							
GLTSCR2	29997	broad.mit.edu	37	19	48258620	48258620	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:48258620delG	uc002phm.2	+	9	1093	c.1069delG	c.(1069-1071)GCGfs	p.A357fs	GLTSCR2_uc002phk.2_Frame_Shift_Del_p.A357fs|GLTSCR2_uc002phl.2_Frame_Shift_Del_p.A357fs|GLTSCR2_uc010elj.2_Frame_Shift_Del_p.A357fs|GLTSCR2_uc010elk.1_RNA|SNORD23_uc010ell.2_5'Flank	NM_015710	NP_056525	Q9NZM5	GSCR2_HUMAN	glioma tumor suppressor candidate region gene 2	357						nucleolus				central_nervous_system(1)	1		all_cancers(25;1.47e-06)|all_lung(116;6.89e-05)|all_epithelial(76;0.000108)|Lung NSC(112;0.000117)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000301)|OV - Ovarian serous cystadenocarcinoma(262;0.00031)|Epithelial(262;0.0149)|GBM - Glioblastoma multiforme(486;0.0278)		ACAGCAGGCCGCGTTGCGGGC	0.657													---	---	---							
SCAF1	58506	broad.mit.edu	37	19	50156573	50156573	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr19:50156573delC	uc002poq.2	+	7	3051	c.2927delC	c.(2926-2928)ACCfs	p.T976fs		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	976					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GTTCCTAGCACCCCGCCCCCC	0.682													---	---	---							
CD8B	926	broad.mit.edu	37	2	87085532	87085533	+	Frame_Shift_Ins	INS	-	T	T	rs137953763	byFrequency	TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:87085532_87085533insT	uc002srz.2	-	2	100_101	c.50_51insA	c.(49-51)CATfs	p.H17fs	RMND5A_uc002srs.3_Intron|CD8B_uc002srw.2_Frame_Shift_Ins_p.H17fs|CD8B_uc002srx.2_Frame_Shift_Ins_p.H17fs|CD8B_uc002sry.2_Frame_Shift_Ins_p.H17fs|CD8B_uc010fgt.2_Frame_Shift_Ins_p.H17fs|CD8B_uc002ssa.2_Frame_Shift_Ins_p.H17fs|CD8B_uc010yto.1_Frame_Shift_Ins_p.H17fs	NM_004931	NP_004922	P10966	CD8B_HUMAN	CD8b antigen isoform 5 precursor	17					immune response|regulation of defense response to virus by virus|regulation of immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway|viral reproduction	early endosome|extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			upper_aerodigestive_tract(1)|skin(1)	2						CTGAGTTGCCATGGAGAACTAG	0.490													---	---	---							
RNPEPL1	57140	broad.mit.edu	37	2	241517130	241517131	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr2:241517130_241517131delAG	uc002vzi.2	+	11	1899_1900	c.1306_1307delAG	c.(1306-1308)AGAfs	p.R436fs	RNPEPL1_uc010fzf.2_Frame_Shift_Del_p.R342fs|RNPEPL1_uc002vzj.2_Frame_Shift_Del_p.R84fs	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	436					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		CAACCTGCGCAGAGCCATCCAG	0.663													---	---	---							
DLGAP4	22839	broad.mit.edu	37	20	35155318	35155330	+	Frame_Shift_Del	DEL	GAGGCCCGCAAGA	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:35155318_35155330delGAGGCCCGCAAGA	uc002xff.2	+	13	3289_3301	c.2854_2866delGAGGCCCGCAAGA	c.(2854-2868)GAGGCCCGCAAGAGAfs	p.E952fs	DLGAP4_uc010zvp.1_Frame_Shift_Del_p.E952fs|DLGAP4_uc002xfg.2_Frame_Shift_Del_p.E248fs|DLGAP4_uc002xfh.2_Frame_Shift_Del_p.E416fs|DLGAP4_uc002xfi.2_3'UTR|DLGAP4_uc002xfj.2_Frame_Shift_Del_p.E248fs|uc002xfk.3_Intron	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	955_959					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GCAGCGCCAGGAGGCCCGCAAGAGACTCCTGGC	0.638													---	---	---							
Unknown	0	broad.mit.edu	37	20	55336590	55336592	+	IGR	DEL	TGA	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr20:55336590_55336592delTGA								TFAP2C (122254 upstream) : BMP7 (407217 downstream)																							gtggtaacggtgatgatgatggt	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	5	67455003	67455003	+	IGR	DEL	A	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr5:67455003delA								CD180 (962386 upstream) : PIK3R1 (56601 downstream)																							TTTTTTTTTTATCTATCAAGC	0.214													---	---	---							
Unknown	0	broad.mit.edu	37	6	34158925	34158925	+	IGR	DEL	A	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr6:34158925delA								GRM4 (45056 upstream) : HMGA1 (45652 downstream)																							GTCATTGTGGaaaaaaaaaaa	0.294													---	---	---							
IQUB	154865	broad.mit.edu	37	7	123109372	123109372	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr7:123109372delT	uc003vkn.2	-	9	2054	c.1477delA	c.(1477-1479)ATCfs	p.I493fs	IQUB_uc003vko.2_Frame_Shift_Del_p.I493fs|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Frame_Shift_Del_p.I493fs	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	493										ovary(3)|large_intestine(1)	4						CTGGCTCTGATGGTGAACTGC	0.353													---	---	---							
TOX	9760	broad.mit.edu	37	8	59750796	59750798	+	In_Frame_Del	DEL	CTT	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:59750796_59750798delCTT	uc003xtw.1	-	5	987_989	c.766_768delAAG	c.(766-768)AAGdel	p.K256del		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	256	Nuclear localization signal (Potential).					nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				CATTGGGATCCTTCTTCTTCTTC	0.453													---	---	---							
MYBL1	4603	broad.mit.edu	37	8	67488453	67488453	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr8:67488453delT	uc003xwj.2	-	10	1666	c.1259delA	c.(1258-1260)AACfs	p.N420fs	MYBL1_uc003xwl.2_Frame_Shift_Del_p.N420fs|MYBL1_uc003xwk.2_Frame_Shift_Del_p.N419fs	NM_001080416	NP_001073885	P10243	MYBA_HUMAN	v-myb myeloblastosis viral oncogene homolog	420	Negative regulatory domain (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)	3			Epithelial(68;0.00211)|all cancers(69;0.00726)|OV - Ovarian serous cystadenocarcinoma(28;0.00989)|BRCA - Breast invasive adenocarcinoma(89;0.0938)			ATTACAAGTGTTTTTTTTCCC	0.403													---	---	---							
Unknown	0	broad.mit.edu	37	9	31644562	31644563	+	IGR	INS	-	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chr9:31644562_31644563insT								None (None upstream) : ACO1 (740038 downstream)																							CACAAGGAGAGTTTTTTTTTTT	0.371													---	---	---							
ATXN3L	92552	broad.mit.edu	37	X	13337468	13337469	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-4227-01A-01D-1870-08	TCGA-BB-4227-10A-01D-1870-08									Somatic	Phase_I	Capture				Illumina GAIIx	c1b315bb-773b-4fd0-88ec-d11044996adc	cca35864-76be-4095-afb4-eb4ca15b142c	g.chrX:13337468_13337469insT	uc010ned.2	-	1	1050_1051	c.585_586insA	c.(583-588)AAATTAfs	p.K195fs		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	195_196					protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						TGTTTTACTAATTTTTTTCCAT	0.381													---	---	---							
