Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SLC25A34	284723	genome.wustl.edu	37	1	16064650	16064650	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_207348.1	+1	provisional	p.G169	0.015	18	0.000	7	0.714	0	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CSMD2	114784	genome.wustl.edu	37	1	33985238	33985238	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_052896.3	-1	validated	p.H3448	0.780	294	0%	152	34.2%	2	100%	-	-	-	NULL
CSMD2	114784	genome.wustl.edu	37	1	34052715	34052715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_052896.3	-1	validated	p.V2306I	0.736	23	0%	31	29%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PTPRF	5792	genome.wustl.edu	37	1	44086249	44086249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_002840.3	+1	reviewed	p.R1788Q	1.000	121	0%	124	40.3%	366	51.6%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
B4GALT2	8704	genome.wustl.edu	37	1	44456099	44456099	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001005417.1	+1	reviewed	p.P366	0.002	165	0%	105	20%	80	27.5%	-	-	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
LRRIQ3	127255	genome.wustl.edu	37	1	74507410	74507410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001105659.1	-1	provisional	p.R402Q	0.000	350	0%	297	33%	0	-	possibly_damaging(0.473)	deleterious(0.03)	deleterious(0.520)	NULL
POGZ	23126	genome.wustl.edu	37	1	151381039	151381039	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_015100.2	-1	reviewed	p.R694*	1.000	556	0%	566	21.2%	12	33.3%	-	-	-	NULL
OR2M2	391194	genome.wustl.edu	37	1	248343317	248343317	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001004688.1	+1	provisional	p.S10	0.001	662	0.2%	539	34.7%	0	-	-	-	-	superfamily_SSF81321
CNTNAP5	129684	genome.wustl.edu	37	2	125660527	125660527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_130773.2	+1	reviewed	p.V1168I	1.000	74	0%	81	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
UBR3	130507	genome.wustl.edu	37	2	170815027	170815027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_172070.3	+1	validated	p.M1209V	1.000	375	0.3%	272	13.6%	2	50%	possibly_damaging(0.794)	deleterious(0.03)	deleterious(0.662)	NULL
METTL8	79828	genome.wustl.edu	37	2	172182370	172182370	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000438609	-1	known	p.S174G	0.999	32	0%	27	22.2%	4	0%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PLEKHA3	65977	genome.wustl.edu	37	2	179365846	179365846	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_019091.3	+1	validated	p.R240*	1.000	451	0%	338	22.8%	2	0%	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186696541	186696541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000424728	+1	known	p.F6840S	1.000	108	0%	118	37.3%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
CCDC108	255101	genome.wustl.edu	37	2	219892311	219892311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000409865	-1	known	p.V747M	0.000	54	0%	28	35.7%	2	50%	unknown(0)	-	-	NULL
NKTR	4820	genome.wustl.edu	37	3	42678523	42678523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_005385.3	+1	reviewed	p.K443E	0.996	218	0%	215	36.3%	2	50%	unknown(0)	deleterious(0.02)	-	NULL
ZNF445	353274	genome.wustl.edu	37	3	44489433	44489433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_181489.5	-1	validated	p.A577V	0.000	153	0%	149	36.2%	1	0%	benign(0.003)	tolerated(0.13)	neutral(0.253)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916948	178916950	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_006218.2	+1	reviewed	p.L113in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF54236
PIGG	54872	genome.wustl.edu	37	4	520995	520995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001127178.1	+1	validated	p.R746Q	0.995	26	0%	18	44.4%	20	50%	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1955184	1955184	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001042424.2	+1	reviewed	p.F757	0.997	229	0%	183	29.5%	12	50%	-	-	-	HMMSmart_SM00184,HMMSmart_SM00249
KIAA1109	84162	genome.wustl.edu	37	4	123188077	123188078	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_015312.3	+1	reviewed	p.T2487fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LOC729862	729862	genome.wustl.edu	37	5	28927597	28927597	+	RNA	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	XR_040872.2	+1	model	NULL	0.048	17	0%	10	40%	0	-	-	-	-	-
HSPA4	3308	genome.wustl.edu	37	5	132425285	132425285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_002154.3	+1	validated	p.A426S	1.000	68	0%	75	24%	22	50%	benign(0.036)	tolerated(0.25)	neutral(0.039)	HMMPfam_HSP70,superfamily_SSF100920
TRPC7	57113	genome.wustl.edu	37	5	135692432	135692432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000513104	-1	known	p.S215L	1.000	40	0%	26	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRP_2
UBR2	23304	genome.wustl.edu	37	6	42641554	42641554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_015255.2	+1	reviewed	p.R1371K	1.000	95	0%	88	15.9%	17	17.6%	benign(0.333)	deleterious(0.04)	neutral(0.453)	NULL
SGK1	6446	genome.wustl.edu	37	6	134494209	134494209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001143676.1	-1	reviewed	p.Q262H	1.000	282	0%	213	37.6%	24	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LOC728416	728416	genome.wustl.edu	37	7	56804101	56804101	+	Missense_Mutation	SNP	A	A	C	rs144059673	by1000genomes	TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	XM_001127426.2	-1	model	p.F61L	0.064	16	0%	20	35%	0	-	-	-	-	HMMPfam_TMA7
RELN	5649	genome.wustl.edu	37	7	103236992	103236992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_005045.3	-1	reviewed	p.E1150D	0.999	116	0%	121	33.9%	0	-	possibly_damaging(0.882)	tolerated(0.54)	neutral(0.352)	NULL
CCDC136	64753	genome.wustl.edu	37	7	128457826	128457826	+	Silent	SNP	C	C	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_022742.3	+1	validated	p.P1126	0.976	952	0%	848	14.3%	0	-	-	-	-	NULL
MTPN	136319	genome.wustl.edu	37	7	135614721	135614721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_145808.3	-1	reviewed	p.A104T	1.000	247	0%	190	13.7%	31	29%	unknown(0)	tolerated(0.22)	-	superfamily_Ankyrin repeat
USP17L1P	401447	genome.wustl.edu	37	8	7191381	7191381	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000382655	+1	known	p.S491	0.000	86	0%	59	44.1%	0	-	-	-	-	NULL
PDLIM2	64236	genome.wustl.edu	37	8	22442613	22442613	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_176871.2	+1	validated	p.S134fs	0.853	-	-	-	-	-	-	-	-	-	NULL
COL22A1	169044	genome.wustl.edu	37	8	139890007	139890007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_152888.1	-1	validated	p.R215H	0.998	45	0%	40	32.5%	2	0%	unknown(0)	deleterious(0.03)	-	HMMSmart_SM00327,superfamily_vWA-like
PRUNE2	158471	genome.wustl.edu	37	9	79259686	79259686	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000426088	-1	known	p.R2221*	1.000	161	0%	156	33.3%	11	81.8%	-	-	-	NULL
SEMA4D	10507	genome.wustl.edu	37	9	91994306	91994306	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_006378.3	-1	validated	p.T634	0.034	180	0%	218	37.6%	14	35.7%	-	-	-	HMMSmart_IG,superfamily_SSF48726
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000371953	+1	known	p.R130G	1.000	389	0%	320	75.9%	27	74%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
FGFR2	2263	genome.wustl.edu	37	10	123325027	123325027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_022970.3	-1	reviewed	p.D101Y	1.000	234	0%	200	67.5%	47	97.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
OR51T1	401665	genome.wustl.edu	37	11	4903499	4903499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001004759.1	+1	provisional	p.R151C	1.000	500	0%	433	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
SPRYD5	84767	genome.wustl.edu	37	11	55653041	55653041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_032681.3	+1	validated	p.T46M	0.000	89	0%	102	38.2%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
CPT1A	1374	genome.wustl.edu	37	11	68530096	68530096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001876.3	-1	reviewed	p.T625M	1.000	53	0%	42	16.7%	51	19.6%	benign(0.077)	deleterious(0.02)	neutral(0.389)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
DYNC2H1	79659	genome.wustl.edu	37	11	103026116	103026116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001080463.1	+1	reviewed	p.W1210C	1.000	95	0%	77	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
KCNA5	3741	genome.wustl.edu	37	12	5153857	5153857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_002234.2	+1	reviewed	p.G182R	1.000	74	0%	60	40%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
C3AR1	719	genome.wustl.edu	37	12	8211383	8211383	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_004054.2	-1	validated	p.H467fs	0.760	-	-	-	-	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
PHC1P1	653441	genome.wustl.edu	37	12	55806565	55806565	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000326184	-1	known	p.V652	0.873	89	0%	51	41.2%	16	0%	-	-	-	NULL
OR6C4	341418	genome.wustl.edu	37	12	55945194	55945194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001005494.1	+1	provisional	p.R62W	0.329	769	0%	668	37%	0	-	benign(0.005)	tolerated(0.05)	neutral(0.345)	HMMPfam_7tm_1,superfamily_SSF81321
ATXN2	6311	genome.wustl.edu	37	12	111948236	111948236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_002973.3	-1	reviewed	p.T730M	0.979	487	0%	343	14.9%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SGCG	6445	genome.wustl.edu	37	13	23894792	23894792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_000231.2	+1	reviewed	p.R199W	0.945	21	0%	26	34.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sarcoglycan_1
ATP8A2	51761	genome.wustl.edu	37	13	26343298	26343298	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_016529.4	+1	validated	p.H833	0.004	87	0%	68	20.6%	0	-	-	-	-	superfamily_HAD-like
NALCN	259232	genome.wustl.edu	37	13	101833649	101833649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000376196	-1	known	p.A602T	0.000	114	0%	69	18.8%	0	-	unknown(0)	-	-	NULL
COL4A2	1284	genome.wustl.edu	37	13	111160399	111160399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001846.2	+1	reviewed	p.A1571G	0.998	60	0%	38	39.5%	512	15%	possibly_damaging(0.743)	deleterious(0.02)	deleterious(0.655)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
DHRS7	51635	genome.wustl.edu	37	14	60616839	60616839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_016029.2	-1	validated	p.P234S	1.000	244	0%	230	11.7%	22	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-binding Rossmann-fold domains
SIPA1L1	26037	genome.wustl.edu	37	14	72139332	72139332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_015556.1	+1	provisional	p.P1033S	1.000	100	0%	75	36%	24	50%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	superfamily_PDZ domain-like
IGHV2-5	28457	genome.wustl.edu	37	14	106494557	106494557	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	ENST00000390597	-1	known	p.T7	0.110	74	0%	81	42%	29	0%	-	-	-	NULL
GSG2	83903	genome.wustl.edu	37	17	3628867	3628867	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_031965.2	+1	validated	p.S546	0.062	131	0%	114	12.3%	3	0%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
USP6	9098	genome.wustl.edu	37	17	5074102	5074102	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_004505.2	+1	validated	p.G1282	1.000	154	0%	121	35.5%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
TP53	7157	genome.wustl.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_000546.4	-1	reviewed	p.C238F	1.000	93	0%	93	40.9%	123	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
MYO15A	51168	genome.wustl.edu	37	17	18045435	18045435	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_016239.3	+1	reviewed	p.R1898*	1.000	61	0%	39	17.9%	0	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPOP	8405	genome.wustl.edu	37	17	47696639	47696639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001007226.1	-1	reviewed	p.K103N	1.000	303	0%	264	75.4%	21	90.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
TANC2	26115	genome.wustl.edu	37	17	61492980	61492980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_025185.3	+1	validated	p.R1287Q	1.000	143	0%	150	12.7%	0	-	possibly_damaging(0.742)	tolerated(0.13)	deleterious(0.524)	superfamily_TPR-like
KLK5	25818	genome.wustl.edu	37	19	51446942	51446942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001077491.1	-1	reviewed	p.T276M	1.000	94	0%	114	39.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZNF880	400713	genome.wustl.edu	37	19	52887246	52887247	+	In_Frame_Ins	INS	-	-	CAA	rs34678014	byCluster;by1000genomes	TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001145434.1	+1	validated	p.141in_frame_insN	0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
INPP5J	27124	genome.wustl.edu	37	22	31523364	31523364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001002837.1	+1	validated	p.V177M	1.000	18	0.000	9	0.667	8	25%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
NLGN4X	57502	genome.wustl.edu	37	X	5821435	5821435	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_020742.2	-1	reviewed	p.A428	0.927	58	0%	46	19.6%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
NHS	4810	genome.wustl.edu	37	X	17750487	17750487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_198270.2	+1	reviewed	p.R1599Q	1.000	112	0%	87	49.4%	2	0%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64717130	64717130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_001010888.3	+1	reviewed	p.R232C	1.000	149	0%	108	38%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARR3	407	genome.wustl.edu	37	X	69500109	69500109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M7-01A-11W-A062-09	TCGA-BG-A0M7-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6093cd06-411a-4fcf-9e3f-b74145de3ea2	40782819-85b9-4d4b-b8d4-5a2b993292db	NM_004312.2	+1	validated	p.L324M	0.997	308	0%	260	16.5%	0	-	benign(0.251)	tolerated(0.07)	neutral(0.345)	HMMPfam_Arrestin_C,superfamily_E set domains
