Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CALN1	83698	genome.wustl.edu	37	7	71743768	71743768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	7	71743768	71743768	G	A	SNP	CALN1	ENST00000433253	human	ensembl	58_37c	-1	known	missense	c.151	p.R51C	0.609	NULL	NULL	-	no_errors
DSPP	1834	genome.wustl.edu	37	4	88536014	88536031	+	In_Frame_Del	DEL	AGCAGTGACAGCAGCAAC	AGCAGTGACAGCAGCAAC	-	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	AGCAGTGACAGCAGCAAC	AGCAGTGACAGCAGCAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	4	88536014	88536031	AGCAGTGACAGCAGCAAC	-	DEL	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2200_2217	p.SSNSSD737in_frame_del	0.982:0.984:0.971:0.984:0.992:0.996:0.999:0.998:0.991:0.966:0.949:0.901:0.734:0.619:0.291:0.240:0.238:0.228	NULL	NULL	-	no_errors
GSN	2934	genome.wustl.edu	37	9	124062270	124062270	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-11A-34D-A10Y-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	5fcc5f15-40eb-496a-9224-b945b471c43e	9	124062270	124062270	T	G	SNP	GSN	NM_000177.4	human	genbank	58_37c	+1	reviewed	missense	c.131	p.V44G	0.000	NULL	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152191571	152191571	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	1	152191571	152191571	C	G	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.2534	p.G845A	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IGSF10	285313	genome.wustl.edu	37	3	151161292	151161292	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	3	151161292	151161292	G	A	SNP	IGSF10	NM_178822.4	human	genbank	58_37c	-1	validated	missense	c.5443	p.R1815C	0.999	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00082,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195506172	195506172	+	Missense_Mutation	SNP	G	G	C	rs146696934	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	3	195506172	195506172	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11895	p.H3965Q	0.136	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NKAP	79576	genome.wustl.edu	37	X	119077341	119077341	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-11A-34D-A10Y-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	5fcc5f15-40eb-496a-9224-b945b471c43e	X	119077341	119077341	C	T	SNP	NKAP	NM_024528.3	human	genbank	58_37c	-1	reviewed	silent	c.228	p.S76	0.002	NULL	HMMPfam_DUF926	-	no_errors
PCDHGA12	26025	genome.wustl.edu	37	5	140810665	140810665	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	5	140810665	140810665	A	C	SNP	PCDHGA12	NM_003735.2	human	genbank	58_37c	+1	reviewed	missense	c.339	p.K113N	0.910	HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
ROR1	4919	genome.wustl.edu	37	1	64624790	64624790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	1	64624790	64624790	C	T	SNP	ROR1	NM_005012.2	human	genbank	58_37c	+1	validated	missense	c.1301	p.S434L	1.000	NULL	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,superfamily_Kringle-like,PatternScan_KRINGLE_1,HMMPfam_Fz,superfamily_Immunoglobulin	-	no_errors
SACS	26278	genome.wustl.edu	37	13	23910597	23910597	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	13	23910597	23910597	C	G	SNP	SACS	NM_014363.4	human	genbank	58_37c	-1	reviewed	missense	c.7418	p.W2473S	1.000	NULL	HMMPfam_ubiquitin,superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Ubiquitin-like,superfamily_Nucleotidyltransferase substrate binding subunit/domain	-	no_errors
TCF4	6925	genome.wustl.edu	37	18	52928746	52928746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	18	52928746	52928746	G	A	SNP	TCF4	NM_001083962.1	human	genbank	58_37c	-1	reviewed	missense	c.941	p.A314V	1.000	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
TIAM1	7074	genome.wustl.edu	37	21	32617864	32617864	+	Silent	SNP	G	G	A	rs145539627	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	21	32617864	32617864	G	A	SNP	TIAM1	NM_003253.2	human	genbank	58_37c	-1	validated	silent	c.1524	p.H508	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,PatternScan_DH_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_PH,HMMSmart_PH,HMMPfam_RBD,HMMSmart_RBD,superfamily_SSF50729	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578290	7578290	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	17	7578290	7578290	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	splice_site	c.560-1	e5-1	1.000	-	-	-	no_errors
TPST1	8460	genome.wustl.edu	37	7	65705728	65705728	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	7	65705728	65705728	C	T	SNP	TPST1	NM_003596.3	human	genbank	58_37c	+1	validated	nonsense	c.316	p.R106*	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
VPS53	55275	genome.wustl.edu	37	17	505056	505056	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B7-01A-12D-A10Y-09	TCGA-BH-A0B7-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2627cdc1-dc02-4816-8628-cab8c8e79139	b3a3a5b7-80bf-49fa-8d4f-ad3086209295	17	505056	505056	C	T	SNP	VPS53	NM_001128159.1	human	genbank	58_37c	-1	reviewed	silent	c.1197	p.T399	0.005	HMMPfam_Vps53_N	HMMPfam_Vps53_N	-	no_errors
