Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BTNL3	10917	genome.wustl.edu	37	5	180420116	180420116	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	180420116	180420116	C	A	SNP	BTNL3	NM_197975.1	human	genbank	58_37c	+1	validated	missense	c.353	p.S118Y	0.000	HMMSmart_IG,superfamily_SSF48726	HMMSmart_IG,HMMPfam_SPRY,HMMSmart_PRY,HMMPfam_V-set,HMMSmart_SPRY,superfamily_SSF48726	-	no_errors
CBLN1	869	genome.wustl.edu	37	16	49315311	49315312	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	16	49315311	49315312	-	A	INS	CBLN1	NM_004352.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.66_65	p.Q22fs	1.000:1.000	NULL	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like	-	no_errors
DHX32	55760	genome.wustl.edu	37	10	127530357	127530357	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	10	127530357	127530357	A	T	SNP	DHX32	NM_018180.2	human	genbank	58_37c	-1	reviewed	missense	c.1498	p.F500I	1.000	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_HA2,HMMPfam_DUF1605,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DTX4	23220	genome.wustl.edu	37	11	58962833	58962833	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	11	58962833	58962833	C	T	SNP	DTX4	NM_015177.1	human	genbank	58_37c	+1	validated	silent	c.1527	p.P509	0.145	NULL	HMMSmart_SM00184,HMMPfam_WWE,HMMSmart_SM00678,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
ENSG00000223468	0	genome.wustl.edu	37	6	46712106	46712106	+	Silent	SNP	T	T	C	rs5007833	byCluster	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-11A-41W-A10F-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	371bff18-75e9-459a-9cf6-417ced089cfc	6	46712106	46712106	T	C	SNP	ENSG00000223468	ENST00000412212	human	ensembl	58_37c	-1	known	silent	c.93	p.K31	0.015	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000229113	0	genome.wustl.edu	37	19	42027743	42027743	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	42027743	42027743	G	A	SNP	ENSG00000229113	ENST00000439847	human	ensembl	58_37c	-1	known	missense	c.541	p.R181W	0.002	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
HHEX	3087	genome.wustl.edu	37	10	94452135	94452135	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	10	94452135	94452135	A	C	SNP	HHEX	NM_002729.4	human	genbank	58_37c	+1	reviewed	silent	c.372	p.L124	1.000	superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
HNRNPD	3184	genome.wustl.edu	37	4	83277695	83277695	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	4	83277695	83277695	T	C	SNP	HNRNPD	NM_031370.2	human	genbank	58_37c	-1	reviewed	missense	c.995	p.Y332C	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_CBFNT,superfamily_RNA-binding domain RBD	-	no_errors
MYO10	4651	genome.wustl.edu	37	5	16675085	16675085	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	16675085	16675085	G	C	SNP	MYO10	NM_012334.2	human	genbank	58_37c	-1	validated	missense	c.4841	p.T1614S	1.000	HMMPfam_MyTH4,HMMSmart_MyTH4	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
OR2G6	391211	genome.wustl.edu	37	1	248685620	248685620	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	248685620	248685620	G	T	SNP	OR2G6	NM_001013355.1	human	genbank	58_37c	+1	validated	missense	c.673	p.V225L	0.001	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHA1	56147	genome.wustl.edu	37	5	140167742	140167742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	140167742	140167742	C	T	SNP	PCDHA1	NM_018900.2	human	genbank	58_37c	+1	reviewed	missense	c.1867	p.R623C	0.997	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHF15	23338	genome.wustl.edu	37	5	133896481	133896481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	5	133896481	133896481	A	G	SNP	PHF15	NM_015288.4	human	genbank	58_37c	+1	provisional	missense	c.518	p.E173G	1.000	HMMPfam_EPL1	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_EPL1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
POP5	51367	genome.wustl.edu	37	12	121018957	121018957	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	121018957	121018957	C	A	SNP	POP5	NM_015918.3	human	genbank	58_37c	-1	validated	nonsense	c.124	p.G42*	1.000	HMMPfam_RNase_P_Rpp14	HMMPfam_RNase_P_Rpp14	-	no_errors
SDPR	8436	genome.wustl.edu	37	2	192700907	192700907	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	2	192700907	192700907	C	T	SNP	SDPR	NM_004657.5	human	genbank	58_37c	-1	reviewed	silent	c.1020	p.A340	0.000	NULL	NULL	-	no_errors
SMARCA4	6597	genome.wustl.edu	37	19	11144187	11144188	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	11144187	11144188	GG	-	DEL	SMARCA4	NM_001128849.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.3768_3769	p.D1257fs	1.000:1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_HSA,HMMSmart_DEXDc,HMMPfam_QLQ,PatternScan_BROMODOMAIN_1,superfamily_SSF52540	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16265833	16265834	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	16265833	16265834	GA	-	DEL	SPEN	NM_015001.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.10906_10907	p.H3638fs	0.999:1.000	superfamily_SPOC-like	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
SRGAP1	57522	genome.wustl.edu	37	12	64474111	64474111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	12	64474111	64474111	C	A	SNP	SRGAP1	NM_020762.2	human	genbank	58_37c	+1	validated	missense	c.1369	p.Q457K	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP	-	no_errors
STAT5B	6777	genome.wustl.edu	37	17	40371806	40371806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	17	40371806	40371806	G	A	SNP	STAT5B	NM_012448.3	human	genbank	58_37c	-1	reviewed	missense	c.605	p.T202M	1.000	HMMPfam_STAT_alpha,superfamily_STAT	HMMPfam_SH2,HMMSmart_SH2,superfamily_P53_like_DNA_bnd,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_SSF55550	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215955505	215955505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	215955505	215955505	C	A	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.10619	p.G3540V	1.000	HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
ZFP112	7771	genome.wustl.edu	37	19	44834085	44834085	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	44834085	44834085	C	T	SNP	ZFP112	NM_001083335.1	human	genbank	58_37c	-1	validated	silent	c.243	p.R81	0.875	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF527	84503	genome.wustl.edu	37	19	37879753	37879753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	19	37879753	37879753	C	T	SNP	ZNF527	NM_032453.1	human	genbank	58_37c	+1	validated	missense	c.802	p.H268Y	0.948	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF672	79894	genome.wustl.edu	37	1	249141669	249141669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B8-01A-21W-A071-09	TCGA-BH-A0B8-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	29798513-2bb1-49f8-8cf3-c903d72072c3	362512ab-407f-47d5-9d9a-dd29647fd176	1	249141669	249141669	G	A	SNP	ZNF672	NM_024836.1	human	genbank	58_37c	+1	provisional	missense	c.196	p.G66S	0.662	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
