Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CCDC11	220136	genome.wustl.edu	37	18	47777321	47777321	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	18	47777321	47777321	T	C	SNP	CCDC11	NM_145020.3	human	genbank	58_37c	-1	validated	missense	c.803	p.H268R	0.896	NULL	NULL	-	no_errors
DCLK1	9201	genome.wustl.edu	37	13	36700119	36700119	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	13	36700119	36700119	G	A	SNP	DCLK1	NM_004734.3	human	genbank	58_37c	-1	validated	silent	c.156	p.S52	0.889	HMMSmart_DCX,superfamily_SSF89837	HMMSmart_S_TKc,HMMPfam_DCX,HMMSmart_DCX,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF89837	-	no_errors
EBF2	64641	genome.wustl.edu	37	8	25897605	25897605	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	8	25897605	25897605	C	T	SNP	EBF2	NM_022659.2	human	genbank	58_37c	-1	validated	missense	c.421	p.E141K	1.000	NULL	HMMSmart_HLH,HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set,PatternScan_COE	-	no_errors
EXOC3	11336	genome.wustl.edu	37	5	453697	453697	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-11A-12W-A100-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	5ab7bda1-93fb-4bbe-b6c8-3c40d57dd066	5	453697	453697	A	G	SNP	EXOC3	NM_007277.4	human	genbank	58_37c	+1	reviewed	missense	c.577	p.M193V	1.000	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors
FLG	2312	genome.wustl.edu	37	1	152282524	152282524	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	1	152282524	152282524	G	A	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	missense	c.4838	p.S1613L	0.001	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
GPR182	11318	genome.wustl.edu	37	12	57389644	57389644	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	12	57389644	57389644	G	A	SNP	GPR182	NM_007264.3	human	genbank	58_37c	+1	reviewed	silent	c.651	p.A217	0.002	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GRN	2896	genome.wustl.edu	37	17	42427851	42427851	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	17	42427851	42427851	T	G	SNP	GRN	NM_002087.2	human	genbank	58_37c	+1	reviewed	silent	c.504	p.G168	0.001	HMMPfam_Granulin,HMMSmart_SM00277,PatternScan_GRANULINS	HMMPfam_Granulin,HMMSmart_SM00277,PatternScan_GRANULINS,PatternScan_PA2_HIS,superfamily_Granulin repeat	-	no_errors
ITGB5	3693	genome.wustl.edu	37	3	124540269	124540269	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	3	124540269	124540269	T	C	SNP	ITGB5	NM_002213.3	human	genbank	58_37c	-1	provisional	missense	c.833	p.D278G	0.986	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,HMMSmart_PSI,HMMSmart_EGF,HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,HMMPfam_Integrin_b_cyt,PatternScan_INTEGRIN_BETA,superfamily_SSF53300,superfamily_SSF57196,superfamily_SSF69179	-	no_errors
LOC100132364	0	genome.wustl.edu	37	16	69776213	69776240	+	Frame_Shift_Del	DEL	TTTGCCTGCGGGAACTCGCTCTTCACCT	TTTGCCTGCGGGAACTCGCTCTTCACCT	-	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	TTTGCCTGCGGGAACTCGCTCTTCACCT	TTTGCCTGCGGGAACTCGCTCTTCACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	16	69776213	69776240	TTTGCCTGCGGGAACTCGCTCTTCACCT	-	DEL	NOB1	NM_014062.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.1261_1234	p.R412fs	0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.004:0.002:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.001:0.027:0.989:0.996:1.000:1.000:1.000:1.000	NULL	HMMSmart_PINc,HMMPfam_NOB1_Zn_bind	-	no_errors
LST-3TM12	338821	genome.wustl.edu	37	12	21168658	21168658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	12	21168658	21168658	G	A	SNP	LST-3TM12	NM_001009562.4	human	genbank	58_37c	+1	validated	missense	c.29	p.R10K	1.000	HMMPfam_OATP,superfamily_MFS general substrate transporter	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	12011144	12011144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	17	12011144	12011144	C	T	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	missense	c.551	p.S184L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MTMR15	22909	genome.wustl.edu	37	15	31197787	31197788	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	15	31197787	31197788	TG	-	DEL	MTMR15	NM_014967.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.921_922	p.V308fs	0.000:0.000	NULL	HMMSmart_SM00734,HMMPfam_VRR_NUC	-	no_errors
NINL	22981	genome.wustl.edu	37	20	25459629	25459629	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	20	25459629	25459629	G	C	SNP	NINL	NM_025176.4	human	genbank	58_37c	-1	validated	missense	c.2131	p.L711V	0.000	NULL	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
NUP160	23279	genome.wustl.edu	37	11	47814420	47814420	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	11	47814420	47814420	T	C	SNP	NUP160	NM_015231.1	human	genbank	58_37c	-1	validated	missense	c.3368	p.N1123S	1.000	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
PCDHB12	56124	genome.wustl.edu	37	5	140590267	140590267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	5	140590267	140590267	G	A	SNP	PCDHB12	NM_018932.3	human	genbank	58_37c	+1	reviewed	silent	c.1788	p.S596	0.988	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3R4	30849	genome.wustl.edu	37	3	130452677	130452677	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	3	130452677	130452677	G	C	SNP	PIK3R4	NM_014602.2	human	genbank	58_37c	-1	validated	missense	c.1165	p.L389V	1.000	superfamily_ARM-type_fold	HMMPfam_HEAT,HMMPfam_Pkinase_Tyr,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
RNGTT	8732	genome.wustl.edu	37	6	89600290	89600290	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	6	89600290	89600290	C	T	SNP	RNGTT	NM_003800.3	human	genbank	58_37c	-1	validated	missense	c.820	p.V274I	1.000	HMMPfam_mRNA_cap_enzyme,superfamily_DNA ligase/mRNA capping enzyme catalytic domain	HMMPfam_DSPc,HMMPfam_mRNA_cap_enzyme,HMMPfam_mRNA_cap_C,superfamily_Nucleic acid-binding proteins,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_DNA ligase/mRNA capping enzyme catalytic domain	-	no_errors
RPSA	3921	genome.wustl.edu	37	3	39452384	39452384	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	3	39452384	39452384	A	C	SNP	RPSA	NM_001012321.1	human	genbank	58_37c	+1	reviewed	missense	c.392	p.H131P	1.000	HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_2	HMMPfam_Ribosomal_S2,superfamily_Ribosomal_S2,PatternScan_RIBOSOMAL_S2_1,PatternScan_RIBOSOMAL_S2_2	-	no_errors
SGSM1	129049	genome.wustl.edu	37	22	25308612	25308612	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DP-01A-21W-A071-09	TCGA-BH-A0DP-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	5a83cbfe-1803-42ca-820b-a4045e413f90	63666721-38a8-46c4-b519-89dba2c58eb1	22	25308612	25308612	G	T	SNP	SGSM1	NM_001039948.2	human	genbank	58_37c	+1	validated	missense	c.2986	p.A996S	1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_RUN,HMMSmart_SM00593	-	no_errors
