Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM12	8038	genome.wustl.edu	37	10	127708377	127708377	+	Missense_Mutation	SNP	G	G	T	rs56409749	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	127708377	127708377	G	T	SNP	ADAM12	NM_003474.4	human	genbank	58_37c	-1	reviewed	missense	c.2556	p.N852K	0.505	NULL	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ARHGEF6	9459	genome.wustl.edu	37	X	135772826	135772826	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	135772826	135772826	T	C	SNP	ARHGEF6	NM_004840.2	human	genbank	58_37c	-1	reviewed	silent	c.1128	p.P376	0.943	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,superfamily_Calponin-homology domain CH-domain,superfamily_PH domain-like	-	no_errors
ARID1A	8289	genome.wustl.edu	37	1	27099478	27099478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	27099478	27099478	G	A	SNP	ARID1A	NM_006015.4	human	genbank	58_37c	+1	reviewed	missense	c.3715	p.A1239T	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
C14orf39	317761	genome.wustl.edu	37	14	60938273	60938273	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	14	60938273	60938273	G	A	SNP	C14orf39	NM_174978.2	human	genbank	58_37c	-1	validated	nonsense	c.508	p.R170*	0.993	NULL	NULL	-	no_errors
C2orf16	84226	genome.wustl.edu	37	2	27804476	27804476	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	27804476	27804476	C	T	SNP	C2orf16	NM_032266.3	human	genbank	58_37c	+1	validated	silent	c.5037	p.R1679	0.000	NULL	NULL	-	no_errors
C2orf90	0	genome.wustl.edu	37	2	905334	905334	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	905334	905334	A	G	SNP	C2orf90	ENST00000434864	human	ensembl	58_37c	-1	known	silent	c.612	p.I204	0.122	NULL	NULL	-	no_errors
CD36	948	genome.wustl.edu	37	7	80285857	80285857	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	7	80285857	80285857	A	T	SNP	CD36	NM_000072.3	human	genbank	58_37c	+1	reviewed	missense	c.122	p.Q41L	1.000	HMMPfam_CD36	HMMPfam_CD36	-	no_errors
CDC27	996	genome.wustl.edu	37	17	45219239	45219239	+	Missense_Mutation	SNP	C	C	T	rs79201963	byCluster	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	17	45219239	45219239	C	T	SNP	CDC27	NM_001114091.1	human	genbank	58_37c	-1	reviewed	missense	c.1549	p.E517K	1.000	HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
CISH	1154	genome.wustl.edu	37	3	50645371	50645371	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	3	50645371	50645371	T	C	SNP	CISH	NM_013324.5	human	genbank	58_37c	-1	reviewed	silent	c.495	p.P165	0.053	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_SOCS_box,HMMSmart_SM00253,superfamily_SH2 domain	-	no_errors
COL22A1	169044	genome.wustl.edu	37	8	139890151	139890151	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	8	139890151	139890151	C	T	SNP	COL22A1	NM_152888.1	human	genbank	58_37c	-1	validated	missense	c.500	p.R167H	0.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
CYP20A1	57404	genome.wustl.edu	37	2	204137424	204137424	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	204137424	204137424	A	G	SNP	CYP20A1	NM_177538.2	human	genbank	58_37c	+1	reviewed	missense	c.632	p.D211G	1.000	superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450	-	no_errors
DPF2	5977	genome.wustl.edu	37	11	65116380	65116380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	11	65116380	65116380	G	A	SNP	DPF2	NM_006268.3	human	genbank	58_37c	+1	reviewed	silent	c.1077	p.P359	0.489	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	HMMSmart_SM00249,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00355,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DYSF	8291	genome.wustl.edu	37	2	71744138	71744138	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	71744138	71744138	T	C	SNP	DYSF	NM_001130987.1	human	genbank	58_37c	+1	reviewed	missense	c.971	p.L324P	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMSmart_DysFN,HMMSmart_DysFC,superfamily_C2_CaLB,HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors
EPHB1	2047	genome.wustl.edu	37	3	134880927	134880927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	3	134880927	134880927	G	A	SNP	EPHB1	NM_004441.4	human	genbank	58_37c	+1	reviewed	missense	c.1490	p.R497Q	0.998	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
F8	2157	genome.wustl.edu	37	X	154194350	154194350	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	154194350	154194350	T	A	SNP	F8	NM_000132.3	human	genbank	58_37c	-1	reviewed	silent	c.1338	p.R446	0.086	superfamily_Cupredoxins	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
HIRA	7290	genome.wustl.edu	37	22	19349345	19349345	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	22	19349345	19349345	G	A	SNP	HIRA	NM_003325.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1885	p.R629*	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_Hira,HMMPfam_HIRA_B,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
KIAA1274	27143	genome.wustl.edu	37	10	72298084	72298084	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	72298084	72298084	C	T	SNP	KIAA1274	NM_014431.2	human	genbank	58_37c	+1	validated	missense	c.1372	p.P458S	1.000	NULL	superfamily_SSF52799	-	no_errors
KIRREL	55243	genome.wustl.edu	37	1	158061187	158061187	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	158061187	158061187	C	A	SNP	KIRREL	NM_018240.5	human	genbank	58_37c	+1	validated	missense	c.1312	p.L438M	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
LOC100287113	0	genome.wustl.edu	37	11	64323714	64323714	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	11	64323714	64323714	G	T	SNP	LOC100287113	XM_002343110.1	human	genbank	58_37c	-1	model	missense	c.247	p.P83T	0.011	NULL	NULL	-	no_errors
LOC727770	727770	genome.wustl.edu	37	1	142827042	142827042	+	RNA	SNP	T	T	G	rs61572869	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	142827042	142827042	T	G	SNP	LOC727770	XR_037208.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.156	-	-	-	pseudogene
LYSMD4	145748	genome.wustl.edu	37	15	100271565	100271565	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	15	100271565	100271565	T	C	SNP	LYSMD4	NM_152449.2	human	genbank	58_37c	-1	validated	missense	c.257	p.Y86C	0.023	NULL	NULL	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56155572	56155572	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	5	56155572	56155572	G	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.664	p.G222fs	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17084538	17084538	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	17084538	17084538	G	C	SNP	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
MTF1	4520	genome.wustl.edu	37	1	38289483	38289483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	1	38289483	38289483	G	A	SNP	MTF1	NM_005955.2	human	genbank	58_37c	-1	reviewed	missense	c.1070	p.T357I	0.073	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MTMR9	66036	genome.wustl.edu	37	8	11180161	11180162	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-	-	TT	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	8	11180161	11180162	-	TT	INS	MTMR9	NM_015458.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1514_1515	p.K506fs	1.000:0.993	NULL	HMMPfam_Myotub-related,superfamily_SSF50729,superfamily_SSF52799	-	no_errors
MYOZ1	58529	genome.wustl.edu	37	10	75394240	75394240	+	Splice_Site	SNP	G	G	A	rs113581761	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	75394240	75394240	G	A	SNP	MYOZ1	NM_021245.2	human	genbank	58_37c	-1	provisional	splice_site	c.502+2	e3+2	0.990	-	-	-	no_errors
PDE2A	5138	genome.wustl.edu	37	11	72300219	72300219	+	Silent	SNP	G	G	A	rs141849669	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	11	72300219	72300219	G	A	SNP	PDE2A	NM_002599.3	human	genbank	58_37c	-1	validated	silent	c.939	p.S313	0.981	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_SM00065,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like	-	no_errors
PHEX	5251	genome.wustl.edu	37	X	22245690	22245690	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	22245690	22245690	T	A	SNP	PHEX	NM_000444.4	human	genbank	58_37c	+1	reviewed	missense	c.2032	p.F678I	0.936	HMMPfam_Peptidase_M13,superfamily_SSF55486	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_SSF55486	-	no_errors
PRF1	5551	genome.wustl.edu	37	10	72358324	72358324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	10	72358324	72358324	G	A	SNP	PRF1	NM_001083116.1	human	genbank	58_37c	-1	reviewed	missense	c.1153	p.R385W	0.039	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_MACPF,HMMSmart_SM00457,PatternScan_MAC_PERFORIN,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
RGL4	266747	genome.wustl.edu	37	22	24040406	24040406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	22	24040406	24040406	G	A	SNP	RGL4	NM_153615.1	human	genbank	58_37c	+1	provisional	missense	c.1268	p.R423Q	0.068	HMMSmart_SM00147,superfamily_Ras GEF	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF	-	no_errors
SCYL1	57410	genome.wustl.edu	37	11	65305349	65305349	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	11	65305349	65305349	C	T	SNP	SCYL1	NM_020680.3	human	genbank	58_37c	+1	reviewed	nonsense	c.2029	p.Q677*	0.067	NULL	HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat	-	no_errors
SLC35B2	347734	genome.wustl.edu	37	6	44223035	44223035	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	6	44223035	44223035	T	G	SNP	SLC35B2	NM_178148.2	human	genbank	58_37c	-1	validated	missense	c.707	p.E236A	1.000	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	PatternScan_COPPER_BLUE,HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115109800	115109800	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	12	115109800	115109800	T	-	DEL	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2078	p.N693fs	1.000	NULL	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TLR2	7097	genome.wustl.edu	37	4	154624747	154624747	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	4	154624747	154624747	C	T	SNP	TLR2	NM_003264.3	human	genbank	58_37c	+1	reviewed	nonsense	c.688	p.R230*	0.683	superfamily_SSF52058	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
TMOD1	7111	genome.wustl.edu	37	9	100308545	100308545	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	9	100308545	100308545	C	A	SNP	TMOD1	NM_003275.3	human	genbank	58_37c	+1	reviewed	missense	c.199	p.L67I	1.000	HMMPfam_Tropomodulin	HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors
TRPC4	7223	genome.wustl.edu	37	13	38237581	38237581	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	13	38237581	38237581	A	T	SNP	TRPC4	NM_003306.1	human	genbank	58_37c	-1	validated	missense	c.1660	p.C554S	1.000	HMMPfam_Ion_trans	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ion_trans,HMMPfam_TRP_2,PatternScan_RIBOSOMAL_S2_1	-	no_errors
UQCRFS1	7386	genome.wustl.edu	37	19	29698494	29698494	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	19	29698494	29698494	C	T	SNP	UQCRFS1	NM_006003.2	human	genbank	58_37c	-1	validated	silent	c.786	p.T262	0.000	HMMPfam_Rieske,superfamily_Rieske_dom	HMMPfam_UCR_TM,superfamily_UCR_TM_region,superfamily_AlphaBeta_subunt,HMMPfam_Ubiq-Cytc-red_N,HMMPfam_Rieske,superfamily_Rieske_dom	-	no_errors
UXS1	80146	genome.wustl.edu	37	2	106761718	106761718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	2	106761718	106761718	C	T	SNP	UXS1	NM_025076.3	human	genbank	58_37c	-1	validated	missense	c.385	p.V129M	1.000	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
XPOT	11260	genome.wustl.edu	37	12	64818467	64818467	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	12	64818467	64818467	T	C	SNP	XPOT	NM_007235.3	human	genbank	58_37c	+1	reviewed	missense	c.1271	p.L424P	1.000	superfamily_ARM-type_fold	HMMPfam_Xpo1,superfamily_ARM-type_fold	-	no_errors
ZMYM3	9203	genome.wustl.edu	37	X	70467688	70467691	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	AGTA	AGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	X	70467688	70467691	AGTA	-	DEL	ZMYM3	NM_005096.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2044_2041	p.Y681fs	1.000:1.000:1.000:1.000	HMMPfam_zf-FCS,HMMSmart_SM00746	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors
ZNF131	7690	genome.wustl.edu	37	5	43174806	43174806	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	5	43174806	43174806	A	G	SNP	ZNF131	NM_003432.1	human	genbank	58_37c	+1	validated	silent	c.1341	p.L447	0.477	NULL	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF98	148198	genome.wustl.edu	37	19	22586248	22586248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	1ddc3a98-e0b9-4b8e-b3d3-9d39eb7d8264	252cb470-d9b2-40bd-a168-2bef4078d8df	19	22586248	22586248	C	T	SNP	ZNF98	NM_001098626.1	human	genbank	58_37c	-1	validated	missense	c.97	p.A33T	0.004	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
