Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB7	0	genome.wustl.edu	37	X	74273323	74273323	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	74273323	74273323	T	C	SNP	ABCB7	NM_004299.3	human	genbank	58_37c	-1	reviewed	missense	c.2144	p.N715S	1.000	NULL	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ADH1C	0	genome.wustl.edu	37	4	100261755	100261755	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	4	100261755	100261755	G	A	SNP	ADH1C	NM_000669.3	human	genbank	58_37c	-1	reviewed	missense	c.941	p.T314M	0.929	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains	-	pseudogene
AIDA	0	genome.wustl.edu	37	1	222849466	222849466	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	222849466	222849466	G	A	SNP	AIDA	NM_022831.2	human	genbank	58_37c	-1	validated	silent	c.555	p.I185	0.933	HMMPfam_DUF1855	HMMPfam_DUF1855,superfamily_Domain from hypothetical 2610208m17rik protein	-	no_errors
AKAP1	0	genome.wustl.edu	37	17	55197673	55197673	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	17	55197673	55197673	C	T	SNP	AKAP1	NM_003488.3	human	genbank	58_37c	+1	reviewed	silent	c.2700	p.Y900	0.003	NULL	HMMSmart_SM00333,HMMSmart_SM00322,HMMPfam_TUDOR,HMMPfam_KH_1,HMMPfam_RII_binding_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),superfamily_Tudor/PWWP/MBT	-	no_errors
ARAF	0	genome.wustl.edu	37	X	47429359	47429359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	47429359	47429359	G	A	SNP	ARAF	NM_001654.3	human	genbank	58_37c	+1	reviewed	missense	c.1487	p.G496E	1.000	superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_RBD,HMMSmart_RBD,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF54236,superfamily_SSF57889	-	no_errors
C19orf33	0	genome.wustl.edu	37	19	38795550	38795551	+	In_Frame_Ins	INS	-	-	AAGAAGGAGAAGGGC	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	19	38795550	38795551	-	AAGAAGGAGAAGGGC	INS	C19orf33	NM_033520.1	human	genbank	58_37c	+1	provisional	in_frame_ins	c.267_268	p.93in_frame_insGKKEK	0.084:0.089	NULL	NULL	-	no_errors
C20orf123	0	genome.wustl.edu	37	20	45173985	45173985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	20	45173985	45173985	G	A	SNP	C20orf123	XM_002343721.1	human	genbank	58_37c	-1	model	missense	c.1010	p.T337M	0.587	HMMPfam_DC_STAMP	HMMPfam_DC_STAMP	-	no_errors
CAND2	0	genome.wustl.edu	37	3	12856688	12856688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	3	12856688	12856688	G	A	SNP	CAND2	NM_012298.2	human	genbank	58_37c	+1	validated	missense	c.776	p.R259H	1.000	superfamily_ARM-type_fold	HMMPfam_HEAT,HMMPfam_TIP120,superfamily_ARM-type_fold	-	no_errors
CCNA2	0	genome.wustl.edu	37	4	122743762	122743762	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	4	122743762	122743762	C	A	SNP	CCNA2	NM_001237.3	human	genbank	58_37c	-1	validated	missense	c.253	p.V85F	0.078	NULL	HMMPfam_Cyclin_C,HMMSmart_SM00385,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin-like	-	no_errors
CD46	0	genome.wustl.edu	37	1	207930364	207930364	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	207930364	207930364	T	G	SNP	CD46	NM_172359.1	human	genbank	58_37c	+1	reviewed	missense	c.103	p.C35G	0.997	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
CDC14C	0	genome.wustl.edu	37	7	48964804	48964804	+	RNA	SNP	A	A	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	7	48964804	48964804	A	T	SNP	CDC14C	NR_003595.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000	-	-	-	pseudogene
CDRT15	0	genome.wustl.edu	37	17	14139702	14139702	+	Missense_Mutation	SNP	G	G	A	rs138924466	byFrequency	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	17	14139702	14139702	G	A	SNP	CDRT15	NM_001007530.1	human	genbank	58_37c	-1	provisional	missense	c.308	p.A103V	0.001	NULL	NULL	-	no_errors
CHIC2	0	genome.wustl.edu	37	4	54880282	54880282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	4	54880282	54880282	C	T	SNP	CHIC2	NM_012110.2	human	genbank	58_37c	-1	reviewed	missense	c.335	p.R112Q	1.000	HMMPfam_Erf4	HMMPfam_Erf4	-	no_errors
COL15A1	0	genome.wustl.edu	37	9	101822233	101822233	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	9	101822233	101822233	C	A	SNP	COL15A1	NM_001855.3	human	genbank	58_37c	+1	reviewed	missense	c.3400	p.L1134M	0.994	HMMPfam_Endostatin	HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Endostatin,HMMPfam_Laminin_G_2,superfamily_C-type_lectin_fold	-	no_errors
CPN1	0	genome.wustl.edu	37	10	101823406	101823406	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	10	101823406	101823406	A	G	SNP	CPN1	NM_001308.2	human	genbank	58_37c	-1	reviewed	missense	c.836	p.I279T	1.000	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain,superfamily_Zn-dependent exopeptidases	-	no_errors
DDI1	0	genome.wustl.edu	37	11	103908332	103908332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	11	103908332	103908332	C	T	SNP	DDI1	NM_001001711.2	human	genbank	58_37c	+1	validated	missense	c.782	p.S261L	0.999	superfamily_Pept_Aspartic,HMMPfam_Asp_protease	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_Pept_Aspartic,HMMPfam_Asp_protease,superfamily_SSF54236	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31242869	31242869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	12	31242869	31242869	G	A	SNP	DDX11	ENST00000404673	human	ensembl	58_37c	+1	known	missense	c.842	p.R281K	0.203	HMMSmart_DEXDc2	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540	-	no_errors
DYNC2H1	0	genome.wustl.edu	37	11	103091479	103091479	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	11	103091479	103091479	G	T	SNP	DYNC2H1	NM_001080463.1	human	genbank	58_37c	+1	reviewed	missense	c.9074	p.G3025V	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000005206	0	genome.wustl.edu	37	19	2353046	2353046	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	19	2353046	2353046	C	G	SNP	ENSG00000005206	ENST00000452401	human	ensembl	58_37c	+1	known	missense	c.1615	p.P539A	0.000	NULL	HMMPfam_PA,HMMSmart_SM00730,HMMPfam_Peptidase_A22B,superfamily_Transferrin receptor ectodomain apical domain	-	no_errors
ENSG00000230974	0	genome.wustl.edu	37	4	49152536	49152536	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	4	49152536	49152536	C	A	SNP	ENSG00000230974	ENST00000447635	human	ensembl	58_37c	-1	known	nonsense	c.43	p.G15*	0.000	NULL	NULL	-	no_stop_codon
FAM127C	0	genome.wustl.edu	37	X	134156443	134156443	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	134156443	134156443	A	C	SNP	FAM127C	NM_001078173.1	human	genbank	58_37c	-1	validated	missense	c.47	p.L16R	0.000	NULL	NULL	-	no_errors
FAM58A	0	genome.wustl.edu	37	X	152858123	152858123	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	152858123	152858123	A	G	SNP	FAM58A	NM_152274.3	human	genbank	58_37c	-1	reviewed	missense	c.496	p.C166R	0.882	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FZD6	0	genome.wustl.edu	37	8	104342280	104342280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	8	104342280	104342280	C	T	SNP	FZD6	NM_003506.3	human	genbank	58_37c	+1	reviewed	missense	c.1939	p.R647W	0.800	NULL	superfamily_Frizzled_Cys-rich,HMMPfam_Frizzled,HMMPfam_Fz,HMMSmart_FRI	-	no_errors
GLS	0	genome.wustl.edu	37	2	191827682	191827682	+	Missense_Mutation	SNP	C	C	T	rs17853842	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	2	191827682	191827682	C	T	SNP	GLS	ENST00000412247	human	ensembl	58_37c	+1	known	missense	c.479	p.P160L	0.049	NULL	superfamily_Ankyrin repeat,superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase	-	no_start_codon
GRB14	0	genome.wustl.edu	37	2	165378582	165378582	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	2	165378582	165378582	G	A	SNP	GRB14	NM_004490.2	human	genbank	58_37c	-1	reviewed	missense	c.724	p.H242Y	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_RA,HMMSmart_RA,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_PH,HMMSmart_PH,HMMPfam_BPS,superfamily_SSF50729,superfamily_SSF55550	-	no_errors
GRID2IP	0	genome.wustl.edu	37	7	6542661	6542661	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	7	6542661	6542661	C	T	SNP	GRID2IP	NM_001145118.1	human	genbank	58_37c	-1	validated	missense	c.3041	p.R1014Q	1.000	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
INHBA	0	genome.wustl.edu	37	7	41729517	41729517	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	7	41729517	41729517	A	T	SNP	INHBA	NM_002192.2	human	genbank	58_37c	-1	reviewed	missense	c.1012	p.W338R	1.000	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
KIF6	0	genome.wustl.edu	37	6	39507794	39507794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	6	39507794	39507794	G	A	SNP	KIF6	NM_145027.4	human	genbank	58_37c	-1	validated	missense	c.1630	p.L544F	1.000	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC100130800	0	genome.wustl.edu	37	1	110714851	110714851	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	110714851	110714851	G	C	SNP	LOC100130800	XM_001719118.1	human	genbank	58_37c	-1	model	missense	c.46	p.P16A	0.002	NULL	NULL	-	no_errors
LOC284441	0	genome.wustl.edu	37	19	20369097	20369097	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	19	20369097	20369097	C	T	SNP	LOC284441	NR_003128.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.557	-	-	-	pseudogene
LOC728310	0	genome.wustl.edu	37	15	29088506	29088523	+	RNA	DEL	CTCCTGATCCCGTAGCTC	CTCCTGATCCCGTAGCTC	-	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	CTCCTGATCCCGTAGCTC	CTCCTGATCCCGTAGCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	15	29088506	29088523	CTCCTGATCCCGTAGCTC	-	DEL	LOC728310	XR_078490.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.220:0.284:0.294:0.271:0.220:0.227:0.201:0.214:0.229:0.214:0.212:0.219:0.322:0.587:0.890:0.940:0.965:0.985	-	-	-	no_errors
MAP2K4	0	genome.wustl.edu	37	17	12016616	12016616	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	17	12016616	12016616	G	T	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	missense	c.752	p.S251I	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MORC4	0	genome.wustl.edu	37	X	106221352	106221352	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	X	106221352	106221352	G	T	SNP	MORC4	NM_024657.4	human	genbank	58_37c	-1	reviewed	missense	c.1014	p.N338K	1.000	NULL	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,HMMPfam_zf-CW	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100646938	100646938	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	7	100646938	100646938	C	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.13523	p.T4508R	0.006	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MYBPC1	0	genome.wustl.edu	37	12	102045070	102045070	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	12	102045070	102045070	C	T	SNP	MYBPC1	NM_002465.2	human	genbank	58_37c	+1	validated	silent	c.1425	p.I475	1.000	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NBAS	0	genome.wustl.edu	37	2	15307434	15307434	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	2	15307434	15307434	T	C	SNP	NBAS	NM_015909.2	human	genbank	58_37c	-1	validated	missense	c.6854	p.N2285S	0.992	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
PRMT1	0	genome.wustl.edu	37	19	50183820	50183820	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	19	50183820	50183820	C	G	SNP	PRMT1	NM_001536.3	human	genbank	58_37c	+1	validated	missense	c.167	p.S56C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
PRSS50	0	genome.wustl.edu	37	3	46759116	46759116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	3	46759116	46759116	C	T	SNP	PRSS50	NM_013270.4	human	genbank	58_37c	-1	validated	missense	c.118	p.A40T	0.000	NULL	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	-	no_errors
PSMB5	0	genome.wustl.edu	37	14	23503966	23503975	+	Frame_Shift_Del	DEL	GCCAGGCTCA	GCCAGGCTCA	-	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	GCCAGGCTCA	GCCAGGCTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	14	23503966	23503975	GCCAGGCTCA	-	DEL	PSMB5	NM_002797.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.125_116	p.L39fs	0.893:0.953:0.950:0.957:0.939:0.758:0.734:0.839:0.999:1.000	NULL	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_errors
PTTG1	0	genome.wustl.edu	37	5	159854736	159854736	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	5	159854736	159854736	G	A	SNP	PTTG1	NM_004219.2	human	genbank	58_37c	+1	reviewed	missense	c.385	p.D129N	1.000	HMMPfam_Securin	HMMPfam_Securin	-	no_errors
RAD54L2	0	genome.wustl.edu	37	3	51673686	51673686	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	3	51673686	51673686	G	A	SNP	RAD54L2	NM_015106.2	human	genbank	58_37c	+1	validated	nonsense	c.2112	p.W704*	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RERE	0	genome.wustl.edu	37	1	8617573	8617573	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	8617573	8617573	C	T	SNP	RERE	NM_001042681.1	human	genbank	58_37c	-1	reviewed	missense	c.532	p.D178N	1.000	HMMPfam_BAH,HMMSmart_SM00439	HMMPfam_GATA,HMMSmart_SM00401,HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_Atrophin-1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
SLTM	0	genome.wustl.edu	37	15	59186732	59186732	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	15	59186732	59186732	C	T	SNP	SLTM	NM_024755.2	human	genbank	58_37c	-1	validated	missense	c.1277	p.C426Y	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,superfamily_SSF68906	-	no_errors
SPEN	0	genome.wustl.edu	37	1	16202935	16202936	+	Frame_Shift_Ins	INS	-	-	TA	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	16202935	16202936	-	TA	INS	SPEN	NM_015001.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.643_644	p.H216fs	1.000:1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
TJP1	0	genome.wustl.edu	37	15	30024679	30024679	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	15	30024679	30024679	C	A	SNP	TJP1	NM_003257.3	human	genbank	58_37c	-1	validated	nonsense	c.1975	p.E659*	1.000	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ZU5,HMMSmart_SM00218,superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,HMMPfam_SH3_2,HMMPfam_Gua_kin_assoc_C,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
UAP1L1	0	genome.wustl.edu	37	9	139972912	139972912	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	9	139972912	139972912	G	T	SNP	UAP1L1	ENST00000360271	human	ensembl	58_37c	+1	known	silent	c.84	p.G28	0.000	HMMPfam_UDPGP	HMMPfam_UDPGP,superfamily_SSF53448	-	no_errors
USH1C	0	genome.wustl.edu	37	11	17531172	17531172	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	11	17531172	17531172	G	T	SNP	USH1C	NM_153676.3	human	genbank	58_37c	-1	reviewed	missense	c.1744	p.L582I	0.002	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
ZNF180	0	genome.wustl.edu	37	19	44980904	44980904	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	19	44980904	44980904	A	T	SNP	ZNF180	NM_013256.3	human	genbank	58_37c	-1	validated	silent	c.1794	p.T598	0.388	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF469	0	genome.wustl.edu	37	16	88494721	88494721	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	16	88494721	88494721	T	A	SNP	ZNF469	NM_001127464.1	human	genbank	58_37c	+1	reviewed	missense	c.843	p.H281Q	0.067	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF691	0	genome.wustl.edu	37	1	43317408	43317408	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BH-A204-01A-11D-A159-09	TCGA-BH-A204-11A-53D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2454d30f-1ca5-4f01-bfce-6ae10e84e75a	38726a6a-7c67-43c9-b795-71512b2a6f7f	1	43317408	43317408	A	G	SNP	ZNF691	NM_015911.2	human	genbank	58_37c	+1	provisional	missense	c.779	p.H260R	0.845	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
