Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PLEKHN1	84069	genome.wustl.edu	37	1	907488	907488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032129.2	+1	validated	p.L275M	0.993	59	0%	100	30%	0	-	possibly_damaging(0.888)	tolerated(0.08)	deleterious(0.647)	HMMSmart_PH,superfamily_SSF50729
SDF4	51150	genome.wustl.edu	37	1	1159328	1159328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016176.3	-1	validated	p.R116Q	0.145	39	0%	75	30.7%	337	34.7%	benign(0.151)	tolerated(0.4)	neutral(0.029)	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand
SCNN1D	6339	genome.wustl.edu	37	1	1221034	1221034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130413.1	+1	validated	p.K85R	0.000	17	0%	45	35.6%	1	0%	possibly_damaging(0.539)	tolerated(0.66)	neutral(0.185)	NULL
SCNN1D	6339	genome.wustl.edu	37	1	1223177	1223177	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000379099	+1	known	p.R161C	0.996	22	0%	37	37.8%	6	16.6%	-	-	-	HMMPfam_ASC
TAS1R3	83756	genome.wustl.edu	37	1	1267135	1267135	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152228.1	+1	provisional	p.C103	0.948	35	0%	66	37.9%	5	0%	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
CCNL2	81669	genome.wustl.edu	37	1	1325701	1325701	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030937.4	-1	validated	p.I305	0.000	103	0%	173	33.5%	108	43.5%	-	-	-	superfamily_Cyclin-like
ATAD3C	219293	genome.wustl.edu	37	1	1391200	1391200	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039211.2	+1	validated	p.I156	0.979	59	0%	80	42.5%	1	100%	-	-	-	superfamily_SSF52540
ATAD3B	83858	genome.wustl.edu	37	1	1421543	1421543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031921.4	+1	provisional	p.K339N	0.992	47	0%	115	29.6%	34	47%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MIB2	142678	genome.wustl.edu	37	1	1563680	1563680	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000514234	+1	known	p.A497T	0.426	27	0%	63	27%	89	39.3%	-	-	-	HMMSmart_SM00248,superfamily_Ankyrin repeat
MORN1	79906	genome.wustl.edu	37	1	2290058	2290058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024848.1	-1	provisional	p.N281S	0.000	190	0%	354	35.9%	3	33.3%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
MMEL1	79258	genome.wustl.edu	37	1	2526775	2526775	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033467.3	-1	reviewed	p.I499	0.670	63	0%	103	33%	1	100%	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
PRDM16	63976	genome.wustl.edu	37	1	3160683	3160683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022114.3	+1	reviewed	p.Q140H	0.996	55	0%	137	19%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00317,superfamily_SET domain
PRDM16	63976	genome.wustl.edu	37	1	3342265	3342265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022114.3	+1	reviewed	p.Q1019H	1.000	40	0%	75	29.3%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MEGF6	1953	genome.wustl.edu	37	1	3427357	3427357	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000485002	-1	known	p.A248V	0.044	5	0.000	20	0.400	6	16.6%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
TPRG1L	127262	genome.wustl.edu	37	1	3542422	3542422	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182752.3	+1	validated	p.E147*	1.000	58	0%	104	23.1%	24	0%	-	-	-	NULL
CCDC27	148870	genome.wustl.edu	37	1	3670717	3670717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152492.2	+1	validated	p.F118L	0.053	55	0%	106	29.2%	0	-	benign(0.053)	deleterious(0)	neutral(0.448)	NULL
CEP104	9731	genome.wustl.edu	37	1	3755665	3755665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014704.3	-1	validated	p.R252G	0.994	102	0%	94	36.2%	13	30.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CEP104	9731	genome.wustl.edu	37	1	3765296	3765296	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014704.3	-1	validated	p.R55*	0.999	125	0.8%	147	31.3%	17	52.9%	-	-	-	NULL
DFFB	1677	genome.wustl.edu	37	1	3800126	3800126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004402.2	+1	reviewed	p.D280Y	0.000	232	0%	342	28.1%	8	25%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_DFF40,superfamily_His-Me finger endonucleases
NPHP4	261734	genome.wustl.edu	37	1	5927117	5927117	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015102.2	-1	reviewed	p.P1177	0.001	36	0%	73	31.5%	10	60%	-	-	-	NULL
NPHP4	261734	genome.wustl.edu	37	1	6038332	6038332	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015102.2	-1	reviewed	p.E93*	1.000	58	0%	117	28.2%	1	0%	-	-	-	NULL
KCNAB2	8514	genome.wustl.edu	37	1	6142305	6142305	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003636.2	+1	reviewed	p.F84	0.987	92	0%	124	28.2%	17	11.7%	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
CHD5	26038	genome.wustl.edu	37	1	6186679	6186679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015557.1	-1	provisional	p.R1344H	1.000	41	0%	91	36.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1087
CHD5	26038	genome.wustl.edu	37	1	6195406	6195406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015557.1	-1	provisional	p.K918N	1.000	38	0%	109	36.7%	0	-	possibly_damaging(0.95)	deleterious(0.03)	deleterious(0.758)	HMMPfam_SNF2_N
CHD5	26038	genome.wustl.edu	37	1	6196633	6196633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015557.1	-1	provisional	p.Q880H	1.000	100	0%	153	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
GPR153	387509	genome.wustl.edu	37	1	6310578	6310578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207370.2	-1	validated	p.E362D	0.999	31	0%	69	18.8%	1	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
DNAJC11	55735	genome.wustl.edu	37	1	6711655	6711655	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018198.3	-1	validated	p.F213C	1.000	134	0%	234	29.5%	56	39.2%	possibly_damaging(0.654)	tolerated(0.18)	neutral(0.286)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7700578	7700578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015215.1	+1	validated	p.T210M	1.000	52	0%	75	32%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TNFRSF9	3604	genome.wustl.edu	37	1	7997762	7997762	+	Missense_Mutation	SNP	C	C	T	rs186372948	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001561.4	-1	reviewed	p.R134Q	0.785	134	0%	223	33.6%	4	0%	benign(0.272)	tolerated(0.41)	neutral(0.044)	HMMSmart_TNFR
SLC2A5	6518	genome.wustl.edu	37	1	9107748	9107748	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003039.2	-1	validated	p.A113	0.005	256	0%	212	36.8%	8	0%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
H6PD	9563	genome.wustl.edu	37	1	9324568	9324568	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004285.3	+1	reviewed	p.I672	0.620	6	0.000	30	0.200	19	31.5%	-	-	-	HMMPfam_Glucosamine_iso,superfamily_SSF100950
C1orf200	644997	genome.wustl.edu	37	1	9714032	9714032	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000377320	-1	known	p.V103	0.072	94	0%	133	31.6%	0	-	-	-	-	NULL
UBE4B	10277	genome.wustl.edu	37	1	10190565	10190565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105562.1	+1	reviewed	p.S568Y	1.000	119	0%	87	34.5%	14	57.1%	possibly_damaging(0.885)	deleterious(0.04)	deleterious(0.695)	NULL
KIF1B	23095	genome.wustl.edu	37	1	10364025	10364025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183416.3	+1	reviewed	p.R928W	0.978	52	0%	31	22.6%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF1B	23095	genome.wustl.edu	37	1	10380183	10380183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015074.3	+1	reviewed	p.E687A	1.000	111	0%	108	26.9%	2	0%	benign(0.221)	tolerated(0.79)	neutral(0.023)	NULL
CORT	1325	genome.wustl.edu	37	1	10510156	10510156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001302.3	+1	reviewed	p.R9I	0.025	56	0%	112	35.7%	2	50%	unknown(0)	-	-	NULL
APITD1	378708	genome.wustl.edu	37	1	10511634	10511634	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198544.2	+1	reviewed	p.T159	1.000	42	0%	58	13.8%	3	33.3%	-	-	-	HMMPfam_Somatostatin
MTOR	2475	genome.wustl.edu	37	1	11184573	11184573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004958.3	-1	reviewed	p.S2215Y	1.000	145	0%	203	31%	132	43.9%	benign(0.125)	deleterious(0.01)	neutral(0.416)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like,superfamily_ARM-type_fold
MTOR	2475	genome.wustl.edu	37	1	11194485	11194485	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004958.3	-1	reviewed	p.T1723	0.972	112	0%	128	27.3%	76	53.9%	-	-	-	HMMPfam_FAT,superfamily_ARM-type_fold
PTCHD2	57540	genome.wustl.edu	37	1	11594593	11594593	+	Missense_Mutation	SNP	C	C	T	rs140072373	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000304391	+1	known	p.R64C	0.998	32	0%	63	34.9%	24	37.5%	unknown(0)	-	-	NULL
FBXO2	26232	genome.wustl.edu	37	1	11709214	11709214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012168.4	-1	reviewed	p.N229T	0.995	22	0%	46	34.8%	14	50%	benign(0.121)	tolerated(0.55)	neutral(0.017)	HMMPfam_FBA,superfamily_Galactose-binding domain-like
FBXO44	93611	genome.wustl.edu	37	1	11718436	11718436	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014765.1	+1	reviewed	p.F126	1.000	101	0%	192	35.4%	17	23.5%	-	-	-	HMMPfam_FBA,superfamily_Galactose-binding domain-like
FBXO6	26270	genome.wustl.edu	37	1	11733419	11733419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018438.5	+1	reviewed	p.E199K	0.980	53	0%	70	32.9%	67	28.3%	benign(0.005)	tolerated(0.54)	neutral(0.007)	HMMPfam_FBA,superfamily_Galactose-binding domain-like
C1orf187	374946	genome.wustl.edu	37	1	11772431	11772431	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198545.3	+1	validated	p.N264	0.019	38	0%	65	27.7%	2	0%	-	-	-	NULL
MTHFR	4524	genome.wustl.edu	37	1	11860307	11860307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005957.4	-1	reviewed	p.R183L	1.000	133	0.8%	177	39.5%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MTHFR,superfamily_FAD-linked oxidoreductase
CLCN6	1185	genome.wustl.edu	37	1	11897112	11897112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001286.2	+1	reviewed	p.K679N	1.000	40	0%	57	40.4%	17	41.1%	possibly_damaging(0.826)	tolerated(0.08)	deleterious(0.613)	HMMPfam_CBS
VPS13D	55187	genome.wustl.edu	37	1	12395858	12395858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015378.2	+1	reviewed	p.S2842L	1.000	121	0%	31	29%	5	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12415988	12415988	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015378.2	+1	reviewed	p.E3238*	1.000	112	0%	70	37.1%	9	44.4%	-	-	-	NULL
PRAMEF12	390999	genome.wustl.edu	37	1	12835246	12835246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080830.1	+1	provisional	p.R79Q	0.000	92	0%	48	29.2%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF52047
PRAMEF11	440560	genome.wustl.edu	37	1	12885009	12885009	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000331684	-1	known	p.L368V	0.000	192	0%	80	30%	0	-	benign(0.235)	tolerated(0.08)	neutral(0.324)	superfamily_SSF52047
PRAMEF4	400735	genome.wustl.edu	37	1	12939766	12939766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009611.2	-1	validated	p.L346I	0.001	203	0%	91	11%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF52047
PRAMEF18	391003	genome.wustl.edu	37	1	13475258	13475258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099850.1	-1	validated	p.L291I	0.012	114	0%	81	32.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF52047
PRDM2	7799	genome.wustl.edu	37	1	14106627	14106627	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012231.4	+1	reviewed	p.S779	0.973	63	0%	45	20%	6	33.3%	-	-	-	NULL
FHAD1	114827	genome.wustl.edu	37	1	15627773	15627773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052929.1	+1	provisional	p.D251N	1.000	52	0%	70	28.6%	1	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
FHAD1	114827	genome.wustl.edu	37	1	15684770	15684770	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000444385	+1	known	p.R206K	0.108	72	0%	47	25.5%	1	0%	-	-	-	NULL
EFHD2	79180	genome.wustl.edu	37	1	15736734	15736734	+	Missense_Mutation	SNP	C	C	A	rs12131549		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024329.5	+1	validated	p.F89L	1.000	12	0%	31	45.2%	95	26.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF47473
EFHD2	79180	genome.wustl.edu	37	1	15753729	15753729	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000445566	+1	known	p.R83*	1.000	26	0%	57	40.4%	154	21.4%	-	-	-	NULL
PLEKHM2	23207	genome.wustl.edu	37	1	16060342	16060342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015164.2	+1	validated	p.F991L	0.997	45	0%	70	35.7%	108	35.1%	benign(0.021)	tolerated(1)	neutral(0.001)	NULL
SPEN	23013	genome.wustl.edu	37	1	16237756	16237756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015001.2	+1	reviewed	p.F401L	1.000	85	0%	51	39.2%	9	33.3%	possibly_damaging(0.638)	tolerated(0.1)	deleterious(0.510)	HMMSmart_RRM,superfamily_SSF54928
SPEN	23013	genome.wustl.edu	37	1	16257460	16257460	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015001.2	+1	reviewed	p.S1575	0.000	115	0%	94	36.2%	8	37.5%	-	-	-	NULL
NBPF1	55672	genome.wustl.edu	37	1	16890499	16890499	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017940.3	-1	predicted	p.L1104R	0.001	911	0%	356	11.8%	23	17.3%	-	-	-	NULL
NBPF1	55672	genome.wustl.edu	37	1	16913590	16913590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017940.3	-1	predicted	p.E245*	0.001	618	0%	403	16.4%	10	10%	-	-	-	NULL
MST1P9	11223	genome.wustl.edu	37	1	17087480	17087480	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_002729.2	-1	validated	NULL	0.994	190	0%	336	11.6%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	-
PADI2	11240	genome.wustl.edu	37	1	17409058	17409058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007365.2	-1	reviewed	p.F380L	1.000	68	0%	70	40%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PAD,superfamily_SSF55909
PADI4	23569	genome.wustl.edu	37	1	17690187	17690187	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012387.2	+1	reviewed	p.V643	1.000	34	0%	40	20%	0	-	-	-	-	HMMPfam_PAD,superfamily_Pentein
RCC2	55920	genome.wustl.edu	37	1	17749329	17749329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136204.1	-1	validated	p.R176Q	1.000	71	0%	116	29.3%	208	43.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
ARHGEF10L	55160	genome.wustl.edu	37	1	18014184	18014184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018125.3	+1	validated	p.E1042D	1.000	64	0%	82	35.4%	62	24.1%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_WD40 repeat-like
ACTL8	81569	genome.wustl.edu	37	1	18152602	18152602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030812.2	+1	validated	p.S230I	0.000	38	0%	38	21.1%	0	-	possibly_damaging(0.74)	deleterious(0.03)	deleterious(0.635)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
PAX7	5081	genome.wustl.edu	37	1	19027222	19027222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002584.2	+1	reviewed	p.L288M	1.000	24	0%	39	33.3%	0	-	benign(0.155)	tolerated(0.5)	neutral(0.024)	NULL
ALDH4A1	8659	genome.wustl.edu	37	1	19199351	19199351	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003748.3	-1	reviewed	p.A560	0.020	43	0%	81	30.9%	37	40.5%	-	-	-	NULL
IFFO2	126917	genome.wustl.edu	37	1	19243510	19243510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136265.1	-1	validated	p.K330N	0.985	131	0%	211	36%	3	33.3%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	HMMPfam_Filament
UBR4	23352	genome.wustl.edu	37	1	19500089	19500089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020765.2	-1	validated	p.F1003L	0.997	87	0%	46	15.2%	9	22.2%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	NULL
HTR6	3362	genome.wustl.edu	37	1	20005176	20005176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000871.1	+1	provisional	p.F277L	1.000	46	0%	79	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
HTR6	3362	genome.wustl.edu	37	1	20005445	20005445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000871.1	+1	provisional	p.D303N	1.000	75	0%	149	36.2%	0	-	benign(0.307)	tolerated(0.2)	neutral(0.145)	HMMPfam_7tm_1,superfamily_SSF81321
RNF186	54546	genome.wustl.edu	37	1	20141514	20141514	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019062.1	-1	provisional	p.A27	0.000	26	0%	21	33.3%	4	50%	-	-	-	NULL
PLA2G2E	30814	genome.wustl.edu	37	1	20246880	20246880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014589.1	-1	provisional	p.R117C	0.936	52	0%	77	36.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
VWA5B1	127731	genome.wustl.edu	37	1	20639336	20639336	+	Silent	SNP	C	C	T	rs182617737	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039500.2	+1	validated	p.F49	0.997	28	0%	37	27%	0	-	-	-	-	NULL
SH2D5	400745	genome.wustl.edu	37	1	21052436	21052436	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103161.1	-1	validated	p.F123V	1.000	33	0%	82	30.5%	0	-	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	superfamily_SSF50729
HP1BP3	50809	genome.wustl.edu	37	1	21076227	21076227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016287.3	-1	validated	p.S377Y	1.000	108	0%	95	23.2%	68	38.2%	probably_damaging(0.992)	tolerated(0.7)	neutral(0.450)	"HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
HP1BP3	50809	genome.wustl.edu	37	1	21106929	21106929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016287.3	-1	validated	p.A2V	1.000	74	0%	74	27%	41	21.9%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
NBPF3	84224	genome.wustl.edu	37	1	21804666	21804666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032264.2	+1	validated	p.A341V	0.001	93	0%	55	29.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_DUF1220
NBPF3	84224	genome.wustl.edu	37	1	21808158	21808158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032264.2	+1	validated	p.S501L	0.003	149	0%	167	22.2%	2	0%	benign(0.035)	tolerated(0.18)	neutral(0.058)	HMMPfam_DUF1220
RAP1GAP	5909	genome.wustl.edu	37	1	21938262	21938262	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145658.1	-1	validated	p.F284	1.000	143	0%	229	33.2%	20	35%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
USP48	84196	genome.wustl.edu	37	1	22079085	22079085	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032236.5	-1	reviewed	p.Q200H	0.999	172	0%	97	23.7%	17	35.2%	possibly_damaging(0.827)	deleterious(0.01)	deleterious(0.720)	HMMPfam_UCH,superfamily_Cysteine proteinases
HSPG2	3339	genome.wustl.edu	37	1	22198834	22198834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000374695	-1	known	p.F1356L	1.000	60	0%	139	31.7%	24	41.6%	probably_damaging(0.998)	tolerated(0.47)	deleterious(0.485)	superfamily_Concanavalin A-like lectins/glucanases
HSPG2	3339	genome.wustl.edu	37	1	22203084	22203084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000374695	-1	known	p.R916Q	0.000	81	1.2%	153	15%	14	14.2%	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
C1QC	714	genome.wustl.edu	37	1	22970666	22970666	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114101.1	+1	reviewed	p.Y50	0.442	25	0%	22	36.4%	311	0.3%	-	-	-	NULL
C1QB	713	genome.wustl.edu	37	1	22987339	22987339	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000491.3	+1	reviewed	p.F74	0.000	32	0%	32	31.2%	255	0%	-	-	-	HMMPfam_Collagen
EPHB2	2048	genome.wustl.edu	37	1	23110911	23110911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004442.6	+1	reviewed	p.E51D	1.000	66	0%	71	29.6%	12	83.3%	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
HTR1D	3352	genome.wustl.edu	37	1	23520161	23520161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000864.4	-1	validated	p.E184D	1.000	81	0%	82	22%	0	-	benign(0.007)	tolerated(0.58)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
HNRNPR	10236	genome.wustl.edu	37	1	23637776	23637776	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102398.1	-1	reviewed	p.E406*	1.000	206	0%	193	18.1%	157	2.5%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ASAP3	55616	genome.wustl.edu	37	1	23782492	23782492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017707.3	-1	reviewed	p.R77Q	0.852	125	0%	87	31%	4	50%	possibly_damaging(0.695)	tolerated(0.17)	neutral(0.308)	NULL
FUCA1	2517	genome.wustl.edu	37	1	24180867	24180867	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000147.4	-1	reviewed	p.E318*	0.008	47	0%	103	27.2%	88	0%	-	-	-	HMMPfam_Alpha_L_fucos,superfamily_Glyco_hydro_cat
CNR2	1269	genome.wustl.edu	37	1	24201120	24201120	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001841.2	-1	reviewed	p.E330*	0.214	90	0%	122	25.4%	0	-	-	-	-	superfamily_SSF81321
CNR2	1269	genome.wustl.edu	37	1	24201401	24201401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001841.2	-1	reviewed	p.R236Q	1.000	53	0%	68	36.8%	2	0%	probably_damaging(0.992)	tolerated(0.53)	neutral(0.455)	HMMPfam_7tm_1,superfamily_SSF81321
MYOM3	127294	genome.wustl.edu	37	1	24410888	24410888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000413341	-1	known	p.F337L	0.278	106	0%	118	26.3%	0	-	-	-	-	NULL
IL22RA1	58985	genome.wustl.edu	37	1	24448199	24448199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021258.2	-1	reviewed	p.P274L	0.992	57	0%	40	42.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NIPAL3	57185	genome.wustl.edu	37	1	24771720	24771720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020448.4	+1	validated	p.P127L	0.998	225	0%	143	33.6%	18	55.5%	probably_damaging(0.991)	tolerated(0.66)	neutral(0.447)	HMMPfam_DUF803
SRRM1	10250	genome.wustl.edu	37	1	24996003	24996003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005839.3	+1	validated	p.R710I	1.000	93	0%	100	31%	84	44%	unknown(0)	deleterious(0.03)	-	NULL
STMN1	3925	genome.wustl.edu	37	1	26227507	26227507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000374292	-1	known	p.N114T	0.934	318	0%	442	29.4%	640	33.2%	-	-	-	HMMPfam_Stathmin
ENSG00000207237	0	genome.wustl.edu	37	1	26290696	26290696	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384508	+1	novel	NULL	0.005	49	0%	72	15.3%	0	-	-	-	-	-
SLC30A2	7780	genome.wustl.edu	37	1	26365708	26365708	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004434.1	-1	validated	p.I354	0.113	90	0%	176	30.7%	0	-	-	-	-	HMMPfam_Cation_efflux
PDIK1L	149420	genome.wustl.edu	37	1	26448822	26448822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152835.3	+1	validated	p.E260D	1.000	86	0%	68	30.9%	7	85.7%	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CATSPER4	378807	genome.wustl.edu	37	1	26526474	26526474	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198137.1	+1	validated	p.I304	0.953	97	0%	135	35.6%	1	100%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CEP85	64793	genome.wustl.edu	37	1	26581776	26581776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022778.2	+1	provisional	p.S108Y	0.845	244	0%	158	32.9%	7	28.5%	possibly_damaging(0.837)	deleterious(0.01)	deleterious(0.725)	NULL
CEP85	64793	genome.wustl.edu	37	1	26595978	26595978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022778.2	+1	provisional	p.E508K	0.987	63	0%	45	51.1%	9	44.4%	benign(0.059)	tolerated(0.62)	neutral(0.008)	NULL
AIM1L	55057	genome.wustl.edu	37	1	26658052	26658052	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000308182	-1	known	p.A479V	0.915	54	0%	102	27.5%	3	66.6%	-	-	-	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
ZNF683	257101	genome.wustl.edu	37	1	26691551	26691551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114759.1	-1	validated	p.Q162H	0.798	142	0%	162	31.5%	3	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ZNF683	257101	genome.wustl.edu	37	1	26691592	26691592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114759.1	-1	validated	p.A149S	0.027	124	0%	141	33.3%	2	0%	benign(0.007)	tolerated(0.66)	neutral(0.003)	NULL
DHDDS	79947	genome.wustl.edu	37	1	26759441	26759441	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024887.2	+1	validated	p.S2*	1.000	178	0%	331	31.1%	28	50%	-	-	-	NULL
HMGN2	3151	genome.wustl.edu	37	1	26801609	26801609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005517.3	+1	validated	p.Q81H	1.000	215	0%	391	26.3%	432	34.7%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	HMMPfam_HMG14_17,HMMSmart_HMG17
SFN	2810	genome.wustl.edu	37	1	27189931	27189931	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006142.3	+1	validated	p.E76	1.000	54	0%	83	25.3%	21	47.6%	-	-	-	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
C1orf172	126695	genome.wustl.edu	37	1	27277965	27277965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152365.2	-1	validated	p.R303C	1.000	37	0%	70	38.6%	65	43%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WASF2	10163	genome.wustl.edu	37	1	27739149	27739149	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006990.2	-1	reviewed	p.P247	0.994	215	0%	228	26.8%	58	22.4%	-	-	-	NULL
AHDC1	27245	genome.wustl.edu	37	1	27875270	27875270	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029882.2	-1	validated	p.W1119*	1.000	14	0%	26	34.6%	38	31.5%	-	-	-	NULL
C1orf38	9473	genome.wustl.edu	37	1	28209251	28209251	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000456990	+1	known	p.S220F	0.015	85	0%	75	36%	13	7.6%	-	-	-	NULL
PTAFR	5724	genome.wustl.edu	37	1	28477281	28477281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000952.4	-1	validated	p.I84M	0.745	161	0%	169	27.8%	11	0%	possibly_damaging(0.654)	tolerated(0.27)	neutral(0.264)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MED18	54797	genome.wustl.edu	37	1	28661469	28661469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127350.1	+1	validated	p.K205N	0.993	39	0%	28	35.7%	10	50%	possibly_damaging(0.655)	deleterious(0.01)	deleterious(0.636)	HMMPfam_Med18
EPB41	2035	genome.wustl.edu	37	1	29391556	29391556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203343.2	+1	reviewed	p.K601N	1.000	83	0%	80	28.7%	22	40.9%	benign(0.384)	deleterious(0.01)	deleterious(0.528)	HMMPfam_SAB
EPB41	2035	genome.wustl.edu	37	1	29424394	29424394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203343.2	+1	reviewed	p.D665Y	1.000	86	0%	77	26%	33	33.3%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	HMMPfam_4_1_CTD
MECR	51102	genome.wustl.edu	37	1	29533290	29533290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016011.2	-1	validated	p.F178L	0.995	73	0%	56	23.2%	45	33.3%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains
MECR	51102	genome.wustl.edu	37	1	29543117	29543117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016011.2	-1	validated	p.D86G	1.000	146	0%	157	25.5%	36	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_GroES-like,HMMPfam_ADH_N
PTPRU	10076	genome.wustl.edu	37	1	29606106	29606106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005704.3	+1	reviewed	p.R568W	1.000	92	0%	149	25.5%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRU	10076	genome.wustl.edu	37	1	29631892	29631892	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005704.3	+1	reviewed	p.P934	0.998	117	0%	170	37.6%	20	45%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRU	10076	genome.wustl.edu	37	1	29647257	29647257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005704.3	+1	reviewed	p.D1260N	1.000	40	0%	58	34.5%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
FABP3	2170	genome.wustl.edu	37	1	31842265	31842265	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004102.3	-1	reviewed	p.F71	0.452	549	0%	566	35%	26	11.5%	-	-	-	HMMPfam_Lipocalin,superfamily_Lipocalins
COL16A1	1307	genome.wustl.edu	37	1	32158081	32158081	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001856.3	-1	reviewed	p.G396	0.985	119	0%	184	35.3%	2	0%	-	-	-	HMMPfam_Collagen
BAI2	576	genome.wustl.edu	37	1	32198584	32198584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001703.2	-1	reviewed	p.L1205M	1.000	35	0%	62	25.8%	8	37.5%	possibly_damaging(0.693)	tolerated(0.07)	deleterious(0.567)	HMMPfam_7tm_2
KHDRBS1	10657	genome.wustl.edu	37	1	32497146	32497146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006559.1	+1	provisional	p.L177I	0.989	142	0%	138	22.5%	115	23.4%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
CCDC28B	79140	genome.wustl.edu	37	1	32667639	32667639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024296.3	+1	reviewed	p.G35S	1.000	35	0%	77	32.5%	11	54.5%	benign(0.273)	deleterious(0.04)	neutral(0.378)	NULL
EIF3I	8668	genome.wustl.edu	37	1	32696777	32696777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003757.2	+1	validated	p.E320K	1.000	130	0%	157	25.5%	391	30.6%	benign(0.003)	tolerated(0.11)	neutral(0.272)	NULL
ZBTB8B	728116	genome.wustl.edu	37	1	32950888	32950888	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145720.1	+1	provisional	p.E453*	1.000	87	0%	70	30%	2	0%	-	-	-	NULL
PHC2	1912	genome.wustl.edu	37	1	33790594	33790594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198040.2	-1	reviewed	p.R817C	1.000	66	0%	45	35.6%	115	35.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
CSMD2	114784	genome.wustl.edu	37	1	33988938	33988938	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052896.3	-1	validated	p.F3349C	1.000	188	0%	221	38.9%	0	-	benign(0.116)	deleterious(0.01)	neutral(0.415)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34038274	34038274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052896.3	-1	validated	p.P2534S	1.000	94	0%	63	25.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34090742	34090742	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052896.3	-1	validated	p.S1763	0.240	48	0%	55	25.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
C1orf94	84970	genome.wustl.edu	37	1	34666496	34666496	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134734.1	+1	validated	p.S378*	0.004	53	0%	41	36.6%	0	-	-	-	-	NULL
GJB5	2709	genome.wustl.edu	37	1	35223084	35223084	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005268.2	+1	provisional	p.F51	0.394	132	0%	135	36.3%	0	-	-	-	-	HMMPfam_Connexin,HMMSmart_CNX
GJB5	2709	genome.wustl.edu	37	1	35223665	35223665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005268.2	+1	provisional	p.S245L	0.479	87	0%	128	36.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35454332	35454332	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007167.3	-1	validated	p.N784S	1.000	69	0%	130	12.3%	2	50%	benign(0.008)	tolerated(0.49)	neutral(0.011)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35469571	35469571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007167.3	-1	validated	p.D664Y	0.999	146	0%	88	22.7%	11	63.6%	possibly_damaging(0.688)	deleterious(0.01)	deleterious(0.651)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35474440	35474440	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007167.3	-1	validated	p.P526	0.892	147	0%	113	31%	4	25%	-	-	-	HMMPfam_zf-FCS,HMMSmart_SM00746
ZMYM1	79830	genome.wustl.edu	37	1	35577418	35577418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024772.3	+1	validated	p.S336Y	0.976	277	0%	330	28.5%	7	14.2%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35578872	35578872	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024772.3	+1	validated	p.Q481*	1.000	53	0%	61	26.2%	3	66.6%	-	-	-	HMMSmart_ZnF_TTF
ZMYM1	79830	genome.wustl.edu	37	1	35579062	35579062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024772.3	+1	validated	p.S544L	0.925	59	0%	72	30.6%	0	-	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35579724	35579724	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024772.3	+1	validated	p.R765*	0.760	94	0%	105	34.3%	3	33.3%	-	-	-	NULL
SFPQ	6421	genome.wustl.edu	37	1	35652825	35652825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005066.2	-1	validated	p.G615R	1.000	199	0%	299	28.4%	533	37.5%	probably_damaging(0.981)	tolerated(0.35)	neutral(0.446)	superfamily_RNA-binding domain RBD
ZMYM4	9202	genome.wustl.edu	37	1	35881153	35881153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005095.2	+1	validated	p.L1383I	1.000	127	0%	90	23.3%	46	36.9%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35881243	35881243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005095.2	+1	validated	p.T1413A	1.000	121	0%	67	35.8%	53	41.5%	possibly_damaging(0.946)	tolerated(0.32)	neutral(0.414)	NULL
KIAA0319L	79932	genome.wustl.edu	37	1	35900677	35900677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024874.4	-1	reviewed	p.K990Q	0.255	50	0%	43	23.3%	43	41.8%	possibly_damaging(0.638)	deleterious(0.04)	deleterious(0.573)	NULL
KIAA0319L	79932	genome.wustl.edu	37	1	35928231	35928231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024874.4	-1	reviewed	p.D429Y	1.000	79	0%	50	28%	12	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00089,superfamily_PKD domain
KIAA0319L	79932	genome.wustl.edu	37	1	35944742	35944742	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000470388	-1	known	p.E72*	0.574	150	0%	93	30.1%	25	16%	-	-	-	NULL
C1orf216	127703	genome.wustl.edu	37	1	36181448	36181448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152374.1	-1	predicted	p.R159C	1.000	108	0%	194	14.4%	12	16.6%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
CLSPN	63967	genome.wustl.edu	37	1	36227667	36227667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022111.2	-1	reviewed	p.R276I	1.000	228	0%	193	14.5%	5	0%	benign(0.418)	deleterious(0)	deleterious(0.580)	NULL
CLSPN	63967	genome.wustl.edu	37	1	36228868	36228868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022111.2	-1	reviewed	p.D213Y	1.000	216	0%	220	12.3%	2	0%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36505935	36505935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024852.2	+1	reviewed	p.R689*	1.000	96	0%	52	32.7%	2	0%	-	-	-	HMMPfam_Piwi,superfamily_RNaseH_fold
MAP7D1	55700	genome.wustl.edu	37	1	36642377	36642377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018067.3	+1	provisional	p.K438M	1.000	32	0%	56	33.9%	119	37.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OSCP1	127700	genome.wustl.edu	37	1	36886190	36886190	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000468441	-1	known	p.L20P	0.998	118	0%	86	36%	7	57.1%	-	-	-	NULL
GRIK3	2899	genome.wustl.edu	37	1	37291209	37291209	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000831.3	-1	reviewed	p.I583	0.739	90	0%	99	24.2%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
ZC3H12A	80149	genome.wustl.edu	37	1	37947216	37947216	+	Missense_Mutation	SNP	C	C	T	rs141438153	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025079.2	+1	validated	p.R200W	0.870	128	0%	175	33.7%	11	27.2%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
RSPO1	284654	genome.wustl.edu	37	1	38079954	38079954	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001038633.2	-1	reviewed	p.K113T	1.000	45	0%	44	38.6%	0	-	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
EPHA10	284656	genome.wustl.edu	37	1	38185187	38185187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099439.1	-1	validated	p.K885N	1.000	67	0%	73	27.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
INPP5B	3633	genome.wustl.edu	37	1	38355260	38355260	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005540.2	-1	reviewed	p.E256*	1.000	165	0%	162	26.5%	4	25%	-	-	-	superfamily_DNase I-like
UTP11L	51118	genome.wustl.edu	37	1	38483411	38483411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016037.3	+1	validated	p.F66C	1.000	141	0%	189	12.2%	38	18.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Utp11
POU3F1	5453	genome.wustl.edu	37	1	38511504	38511504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002699.3	-1	validated	p.K304N	1.000	35	0%	53	13.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
RRAGC	64121	genome.wustl.edu	37	1	39305238	39305238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022157.2	-1	provisional	p.R396Q	0.888	94	0%	80	28.7%	58	39.6%	benign(0.032)	deleterious(0.01)	neutral(0.407)	NULL
RRAGC	64121	genome.wustl.edu	37	1	39305279	39305279	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022157.2	-1	provisional	p.S382	0.957	110	0%	83	31.3%	55	45.4%	-	-	-	NULL
GJA9	81025	genome.wustl.edu	37	1	39340817	39340817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030772.3	-1	provisional	p.E318D	0.027	193	0%	298	32.9%	0	-	benign(0.075)	tolerated(0.06)	neutral(0.328)	NULL
GJA9	81025	genome.wustl.edu	37	1	39341160	39341160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030772.3	-1	provisional	p.R204I	1.000	176	0%	251	16.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC
MACF1	23499	genome.wustl.edu	37	1	39760758	39760758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012090.3	+1	reviewed	p.R737H	0.997	60	0%	38	10.5%	0	-	benign(0.025)	deleterious(0.05)	neutral(0.346)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39800847	39800847	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.E1303*	0.002	86	0%	55	41.8%	1	0%	-	-	-	superfamily_SSF75399
MACF1	23499	genome.wustl.edu	37	1	39801016	39801016	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.I1359S	0.040	53	0%	29	34.5%	0	-	benign(0)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39801383	39801383	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.I1481M	0.005	48	0%	37	10.8%	0	-	benign(0.163)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39823059	39823059	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.E2253*	1.000	73	0%	53	28.3%	5	0%	-	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39827170	39827170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.E2638K	0.000	44	0%	27	44.4%	3	66.6%	benign(0)	tolerated(0.97)	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MACF1	23499	genome.wustl.edu	37	1	39835768	39835768	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000372925	+1	known	p.E1407*	1.000	90	0%	87	37.9%	0	-	possibly_damaging(0.66)	tolerated(0.22)	neutral(0.275)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39854019	39854019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.I3609V	1.000	95	0%	55	34.5%	5	40%	benign(0.001)	tolerated(0.46)	neutral(0.012)	HMMSmart_SPEC,superfamily_Spectrin
KIAA0754	643314	genome.wustl.edu	37	1	39877219	39877219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015038.1	+1	predicted	p.L428I	0.000	127	0%	250	27.2%	1	0%	unknown(0)	tolerated(0.8)	-	NULL
KIAA0754	643314	genome.wustl.edu	37	1	39877556	39877556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015038.1	+1	predicted	p.F540C	0.882	127	0%	296	30.7%	1	0%	unknown(0)	tolerated(0.33)	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39888404	39888404	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000372925	+1	known	p.R2378C	0.987	88	0%	75	32%	6	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39898741	39898741	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.R4267*	1.000	179	0%	87	33.3%	9	22.2%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC
MACF1	23499	genome.wustl.edu	37	1	39913733	39913733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033044.2	+1	reviewed	p.D5109G	1.000	135	0%	100	28%	13	30.7%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
BMP8A	353500	genome.wustl.edu	37	1	39977443	39977443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181809.3	+1	validated	p.F180L	1.000	162	0%	297	11.8%	0	-	benign(0.003)	tolerated(0.31)	neutral(0.027)	HMMPfam_TGFb_propeptide
RLF	6018	genome.wustl.edu	37	1	40701641	40701641	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012421.3	+1	validated	p.L423V	0.998	147	0%	64	45.3%	1	100%	benign(0.111)	tolerated(0.53)	neutral(0.016)	NULL
RLF	6018	genome.wustl.edu	37	1	40703059	40703059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012421.3	+1	validated	p.N895K	1.000	88	0%	38	23.7%	6	50%	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	NULL
COL9A2	1298	genome.wustl.edu	37	1	40781333	40781333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001852.3	-1	reviewed	p.G27C	1.000	16	0%	19	47.4%	3	66.6%	unknown(0)	deleterious(0)	-	NULL
ZNF643	65243	genome.wustl.edu	37	1	40928348	40928348	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000411995	+1	known	p.E204*	0.002	69	0%	65	35.4%	2	50%	benign(0.144)	tolerated(0.21)	neutral(0.056)	NULL
ZNF684	127396	genome.wustl.edu	37	1	41012870	41012870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152373.3	+1	validated	p.F292C	0.933	78	0%	46	30.4%	3	33.3%	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RIMS3	9783	genome.wustl.edu	37	1	41101665	41101665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014747.2	-1	validated	p.E94D	1.000	27	0%	68	22.1%	0	-	possibly_damaging(0.472)	deleterious(0.02)	deleterious(0.539)	NULL
SCMH1	22955	genome.wustl.edu	37	1	41493986	41493986	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031694.2	-1	validated	p.I621	0.993	32	0%	35	28.6%	76	43.4%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
EDN2	1907	genome.wustl.edu	37	1	41949789	41949789	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001956.3	-1	reviewed	p.S50	1.000	18	0%	47	23.4%	13	15.3%	-	-	-	HMMPfam_Endothelin,HMMSmart_SM00272,PatternScan_ENDOTHELIN
HIVEP3	59269	genome.wustl.edu	37	1	42047655	42047655	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024503.3	-1	validated	p.V938	0.902	72	0%	53	26.4%	3	0%	-	-	-	NULL
FOXJ3	22887	genome.wustl.edu	37	1	42654508	42654508	+	Missense_Mutation	SNP	G	G	T	rs58227404		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014947.3	-1	validated	p.F515L	1.000	71	0%	79	26.6%	34	23.5%	possibly_damaging(0.945)	tolerated(0.25)	neutral(0.426)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43119566	43119566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080850.2	+1	validated	p.A740V	0.000	91	0%	84	33.3%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
CCDC30	728621	genome.wustl.edu	37	1	43119673	43119673	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080850.2	+1	validated	p.E776*	0.001	87	0%	84	32.1%	0	-	-	-	-	NULL
PPIH	10465	genome.wustl.edu	37	1	43130588	43130588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006347.3	+1	reviewed	p.F100V	1.000	122	0%	109	30.3%	78	43.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
YBX1	4904	genome.wustl.edu	37	1	43162438	43162438	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000436427	+1	known	p.K210R	0.999	81	0%	90	17.8%	1561	39%	-	-	-	NULL
MED8	112950	genome.wustl.edu	37	1	43853233	43853233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052877.3	-1	reviewed	p.F71L	1.000	194	0%	303	32.3%	40	37.5%	benign(0)	tolerated(1)	-	NULL
SZT2	23334	genome.wustl.edu	37	1	43911655	43911655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015284.2	+1	predicted	p.K2073N	1.000	69	0%	99	14.1%	18	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
SZT2	23334	genome.wustl.edu	37	1	43913519	43913519	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015284.2	+1	predicted	e51-1	1.000	51	0%	66	33.3%	8	62.5%	-	-	-	-
ST3GAL3	6487	genome.wustl.edu	37	1	44201996	44201996	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174963.2	+1	reviewed	p.G21	0.995	338	0%	241	22.8%	3	0%	-	-	-	NULL
IPO13	9670	genome.wustl.edu	37	1	44432257	44432257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014652.3	+1	reviewed	p.R803Q	1.000	136	0%	181	36.5%	40	47.5%	possibly_damaging(0.925)	tolerated(0.08)	deleterious(0.673)	superfamily_ARM-type_fold
PTCH2	8643	genome.wustl.edu	37	1	45294916	45294916	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003738.4	-1	reviewed	p.A428	0.039	12	0%	24	41.7%	3	66.6%	-	-	-	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
HECTD3	79654	genome.wustl.edu	37	1	45469790	45469790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024602.5	-1	validated	p.F763L	0.995	90	0%	128	31.2%	82	36.5%	benign(0)	tolerated(0.91)	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
TESK2	10420	genome.wustl.edu	37	1	45811115	45811115	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007170.2	-1	reviewed	p.I371	1.000	40	0%	50	36%	7	28.5%	-	-	-	NULL
TESK2	10420	genome.wustl.edu	37	1	45813597	45813597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007170.2	-1	reviewed	p.D206N	0.998	61	0%	62	35.5%	5	40%	benign(0.406)	tolerated(0.21)	neutral(0.174)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NASP	4678	genome.wustl.edu	37	1	46081063	46081063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172164.1	+1	reviewed	p.E650K	1.000	90	0%	88	37.5%	186	45.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CYP4A11	1579	genome.wustl.edu	37	1	47400176	47400176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000778.3	-1	reviewed	p.K282N	0.259	183	0%	113	9.7%	0	-	benign(0.023)	tolerated(0.43)	neutral(0.014)	HMMPfam_p450,superfamily_Cytochrome P450
TAL1	6886	genome.wustl.edu	37	1	47685510	47685510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003189.2	-1	validated	p.S293I	1.000	10	0%	30	26.7%	0	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
STIL	6491	genome.wustl.edu	37	1	47767391	47767391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001048166.1	-1	reviewed	p.R99C	1.000	136	0%	121	32.2%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CMPK1	51727	genome.wustl.edu	37	1	47838671	47838671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016308.2	+1	validated	p.F121L	1.000	142	0%	108	32.4%	73	47.9%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_ADK,PatternScan_ADENYLATE_KINASE,superfamily_SSF52540
RNF11	26994	genome.wustl.edu	37	1	51736866	51736866	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014372.4	+1	reviewed	p.R113*	1.000	225	0%	119	29.4%	85	44.7%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
OSBPL9	114883	genome.wustl.edu	37	1	52238276	52238276	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148909.1	+1	reviewed	e14-1	1.000	187	0%	193	39.4%	0	-	-	-	-	-
NRD1	4898	genome.wustl.edu	37	1	52272490	52272490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002525.2	-1	validated	p.D764Y	1.000	398	0%	213	28.2%	65	41.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Metalloenz_metal-bd
NRD1	4898	genome.wustl.edu	37	1	52289395	52289395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002525.2	-1	validated	p.R435I	1.000	89	0%	41	41.5%	36	33.3%	benign(0.023)	tolerated(0.12)	neutral(0.262)	HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd
TXNDC12	51060	genome.wustl.edu	37	1	52490196	52490196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015913.2	-1	provisional	p.R114Q	1.000	194	0%	204	32.4%	41	26.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thioredoxin-like
ZFYVE9	9372	genome.wustl.edu	37	1	52704352	52704352	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004799.2	+1	reviewed	p.K421	0.389	45	0%	24	29.2%	8	50%	-	-	-	NULL
ORC1	4998	genome.wustl.edu	37	1	52861917	52861917	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004153.2	-1	reviewed	p.A174	0.000	242	0%	191	31.4%	9	44.4%	-	-	-	NULL
SCP2	6342	genome.wustl.edu	37	1	53443986	53443986	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002979.3	+1	reviewed	p.E258*	1.000	217	0%	120	29.2%	22	0%	-	-	-	NULL
SCP2	6342	genome.wustl.edu	37	1	53446176	53446176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002979.3	+1	reviewed	p.E312K	1.000	165	0.6%	74	24.3%	29	3.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thiolase_C,superfamily_Thiolase-like
PODN	127435	genome.wustl.edu	37	1	53544344	53544344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153703.3	+1	validated	p.L436M	1.000	29	0%	60	33.3%	7	14.2%	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	superfamily_SSF52047
MAGOH	4116	genome.wustl.edu	37	1	53694592	53694592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002370.2	-1	reviewed	p.S98Y	1.000	139	0%	178	30.3%	137	42.3%	benign(0.004)	tolerated(0.05)	neutral(0.345)	HMMPfam_Mago_nashi,superfamily_Mago nashi protein
TMEM48	55706	genome.wustl.edu	37	1	54266382	54266382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018087.4	-1	validated	p.K402N	0.529	133	0%	131	31.3%	21	47.6%	benign(0.051)	tolerated(0.16)	neutral(0.062)	HMMPfam_Ndc1_Nup
YIPF1	54432	genome.wustl.edu	37	1	54332016	54332016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018982.3	-1	provisional	p.L230I	0.924	31	0%	24	37.5%	52	48%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_Yip1
TMEM59	9528	genome.wustl.edu	37	1	54511386	54511386	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004872.3	-1	provisional	p.F123	0.985	156	0%	128	27.3%	484	38.4%	-	-	-	NULL
USP24	23358	genome.wustl.edu	37	1	55557779	55557779	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015306.2	-1	validated	p.Y1997*	0.091	176	0%	116	33.6%	6	16.6%	-	-	-	NULL
USP24	23358	genome.wustl.edu	37	1	55565540	55565540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015306.2	-1	validated	p.I1598M	1.000	131	0%	63	42.9%	3	33.3%	probably_damaging(0.961)	tolerated(0.24)	neutral(0.442)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP24	23358	genome.wustl.edu	37	1	55612661	55612661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015306.2	-1	validated	p.A571T	1.000	214	0%	96	30.2%	5	60%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
PRKAA2	5563	genome.wustl.edu	37	1	57169786	57169786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006252.3	+1	validated	p.L311V	0.972	119	0%	92	31.5%	1	100%	possibly_damaging(0.597)	deleterious(0.02)	deleterious(0.590)	superfamily_Kinase_like
C1orf168	199920	genome.wustl.edu	37	1	57258224	57258224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004303.4	-1	validated	p.P88T	0.004	184	0%	73	32.9%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
DAB1	1600	genome.wustl.edu	37	1	57480926	57480926	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021080.3	-1	reviewed	p.A358	0.991	38	0%	46	32.6%	0	-	-	-	-	NULL
JUN	3725	genome.wustl.edu	37	1	59247894	59247894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002228.3	-1	reviewed	p.K283N	1.000	141	0%	219	37%	131	40.4%	benign(0.422)	deleterious(0)	deleterious(0.582)	HMMSmart_BRLZ,HMMPfam_bZIP_1
C1orf87	127795	genome.wustl.edu	37	1	60499180	60499180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152377.1	-1	predicted	p.R333C	0.722	241	0%	109	33.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_EF-hand
L1TD1	54596	genome.wustl.edu	37	1	62672573	62672573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019079.4	+1	validated	p.K91N	0.002	40	0%	31	41.9%	0	-	unknown(0)	deleterious(0)	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	62923365	62923365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033407.2	-1	validated	p.A2044V	1.000	236	0%	157	29.9%	22	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
DOCK7	85440	genome.wustl.edu	37	1	62941819	62941819	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000454575	-1	known	p.R1044W	1.000	215	0.5%	250	29.2%	21	47.6%	-	-	-	NULL
DOCK7	85440	genome.wustl.edu	37	1	63005328	63005328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033407.2	-1	validated	p.D1032G	1.000	74	0%	66	9.1%	14	7.1%	probably_damaging(0.995)	tolerated(0.15)	deleterious(0.699)	NULL
DOCK7	85440	genome.wustl.edu	37	1	63027304	63027304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033407.2	-1	validated	p.S728L	1.000	81	0%	52	28.8%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANGPTL3	27329	genome.wustl.edu	37	1	63066790	63066790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014495.2	+1	reviewed	p.S215Y	0.833	127	0%	54	35.2%	0	-	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	NULL
ATG4C	84938	genome.wustl.edu	37	1	63282296	63282296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032852.2	+1	reviewed	p.V71L	0.035	81	0%	50	40%	5	60%	benign(0.002)	tolerated(0.29)	neutral(0.029)	NULL
FOXD3	27022	genome.wustl.edu	37	1	63789273	63789273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012183.2	+1	reviewed	p.F182V	1.000	52	0%	85	17.6%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
ALG6	29929	genome.wustl.edu	37	1	63872050	63872050	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013339.3	+1	reviewed	p.E137*	1.000	248	0%	187	39%	7	42.8%	-	-	-	HMMPfam_Alg6_Alg8
ITGB3BP	23421	genome.wustl.edu	37	1	63919611	63919611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014288.3	-1	provisional	p.K154N	0.010	174	0%	90	30%	36	36.1%	benign(0.399)	deleterious(0.01)	deleterious(0.534)	HMMPfam_NRIF3
PGM1	5236	genome.wustl.edu	37	1	64095098	64095098	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002633.2	+1	reviewed	p.I83	0.994	203	0%	90	27.8%	73	50.6%	-	-	-	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains
RAVER2	55225	genome.wustl.edu	37	1	65296535	65296535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018211.3	+1	validated	p.R635I	1.000	108	0%	70	21.4%	10	30%	possibly_damaging(0.849)	tolerated(0.05)	deleterious(0.671)	NULL
LEPR	3953	genome.wustl.edu	37	1	66036210	66036210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002303.4	+1	reviewed	p.R32I	0.967	147	0%	63	36.5%	0	-	possibly_damaging(0.746)	deleterious(0.02)	deleterious(0.657)	NULL
LEPR	3953	genome.wustl.edu	37	1	66036295	66036295	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002303.4	+1	reviewed	p.S60	0.000	156	0%	81	34.6%	2	0%	-	-	-	NULL
LEPR	3953	genome.wustl.edu	37	1	66062194	66062194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002303.4	+1	reviewed	p.S256Y	1.000	144	0%	120	30%	11	27.2%	possibly_damaging(0.753)	tolerated(0.93)	neutral(0.277)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LEPR	3953	genome.wustl.edu	37	1	66088647	66088647	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002303.4	+1	reviewed	p.G886*	1.000	238	0%	141	35.5%	5	60%	-	-	-	NULL
PDE4B	5142	genome.wustl.edu	37	1	66798193	66798193	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037341.1	+1	reviewed	p.E213*	1.000	159	0%	79	24.1%	3	0%	-	-	-	NULL
PDE4B	5142	genome.wustl.edu	37	1	66827368	66827368	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037341.1	+1	reviewed	p.L304	1.000	127	0%	61	6.6%	3	0%	-	-	-	NULL
TCTEX1D1	200132	genome.wustl.edu	37	1	67242082	67242082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152665.2	+1	validated	p.S111Y	0.998	153	0%	89	32.6%	0	-	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Tctex-1
INSL5	10022	genome.wustl.edu	37	1	67263855	67263855	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005478.3	-1	reviewed	p.P83	0.000	102	0%	25	48%	0	-	-	-	-	HMMSmart_IlGF,superfamily_Insulin-like
MIER1	57708	genome.wustl.edu	37	1	67436541	67436541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020948.3	+1	validated	p.D246Y	1.000	94	0%	47	27.7%	11	36.3%	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_ELM2
WLS	79971	genome.wustl.edu	37	1	68564357	68564357	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002292.2	-1	validated	p.S530	0.000	124	0%	56	39.3%	30	26.6%	-	-	-	NULL
RPE65	6121	genome.wustl.edu	37	1	68910558	68910558	+	Missense_Mutation	SNP	C	C	T	rs61752870		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000329.2	-1	reviewed	p.R85H	1.000	43	0%	49	42.9%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_RPE65
LRRC7	57554	genome.wustl.edu	37	1	70257822	70257822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020794.2	+1	validated	p.E96*	1.000	121	0%	60	30%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
LRRC7	57554	genome.wustl.edu	37	1	70451979	70451979	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020794.2	+1	validated	p.E243*	1.000	175	0%	55	20%	0	-	-	-	-	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
LRRC7	57554	genome.wustl.edu	37	1	70482166	70482166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020794.2	+1	validated	p.F385L	1.000	253	0%	80	37.5%	0	-	possibly_damaging(0.756)	tolerated(0.08)	deleterious(0.579)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like
LRRC7	57554	genome.wustl.edu	37	1	70505248	70505248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020794.2	+1	validated	p.S1209R	0.904	79	0%	28	39.3%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
LRRC40	55631	genome.wustl.edu	37	1	70646777	70646777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017768.4	-1	validated	p.R218I	0.999	70	0%	30	33.3%	4	0%	benign(0.009)	tolerated(0.38)	neutral(0.018)	HMMPfam_LRR_1,superfamily_SSF52058
LRRC40	55631	genome.wustl.edu	37	1	70650530	70650530	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017768.4	-1	validated	p.Q159*	1.000	359	0%	139	29.5%	13	7.6%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
ANKRD13C	81573	genome.wustl.edu	37	1	70761923	70761923	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030816.4	-1	validated	p.E315*	1.000	214	0%	177	29.4%	8	12.5%	-	-	-	NULL
HHLA3	11147	genome.wustl.edu	37	1	70832129	70832129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031693.2	+1	validated	p.L55I	0.275	19	0%	27	22.2%	24	8.3%	possibly_damaging(0.875)	-	-	NULL
CTH	1491	genome.wustl.edu	37	1	70877188	70877188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001902.4	+1	reviewed	p.E30D	1.000	53	0%	62	33.9%	3	33.3%	benign(0.032)	tolerated(0.98)	neutral(0.002)	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases
CTH	1491	genome.wustl.edu	37	1	70887295	70887295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001902.4	+1	reviewed	p.K131N	1.000	234	0%	165	31.5%	2	50%	benign(0.022)	tolerated(0.15)	neutral(0.242)	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases
PTGER3	5733	genome.wustl.edu	37	1	71328078	71328078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000370934	-1	known	p.E418K	0.000	128	0%	90	44.4%	0	-	benign(0.003)	-	-	NULL
PTGER3	5733	genome.wustl.edu	37	1	71439999	71439999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001126044.1	-1	reviewed	p.W384R	1.000	145	0.7%	64	37.5%	1	0%	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
PTGER3	5733	genome.wustl.edu	37	1	71513050	71513050	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198718.1	-1	reviewed	p.L71	1.000	13	0%	28	35.7%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LRRIQ3	127255	genome.wustl.edu	37	1	74648256	74648256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105659.1	-1	provisional	p.R180Q	0.005	114	0%	72	31.9%	0	-	possibly_damaging(0.582)	tolerated(0.22)	neutral(0.242)	NULL
TNNI3K	51086	genome.wustl.edu	37	1	74954882	74954882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001112808.1	+1	validated	p.E812K	0.994	66	0%	44	25%	0	-	possibly_damaging(0.712)	tolerated(0.32)	neutral(0.282)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C1orf173	127254	genome.wustl.edu	37	1	75037039	75037039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002912.4	-1	validated	p.S1452L	0.000	80	0%	53	32.1%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75072417	75072417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002912.4	-1	validated	p.S453P	0.003	269	0%	150	30%	0	-	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	NULL
C1orf173	127254	genome.wustl.edu	37	1	75078489	75078489	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002912.4	-1	validated	p.T335	0.792	85	0%	54	38.9%	0	-	-	-	-	NULL
CRYZ	1429	genome.wustl.edu	37	1	75171991	75171991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130042.1	-1	reviewed	p.L327I	1.000	55	0%	35	31.4%	43	41.8%	benign(0.282)	tolerated(0.06)	neutral(0.409)	NULL
LHX8	431707	genome.wustl.edu	37	1	75602349	75602349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001933.1	+1	validated	p.R27H	1.000	23	0%	71	32.4%	0	-	probably_damaging(0.986)	tolerated(0.22)	deleterious(0.476)	NULL
LHX8	431707	genome.wustl.edu	37	1	75608952	75608952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001933.1	+1	validated	p.V180A	1.000	86	0%	98	22.4%	0	-	probably_damaging(0.987)	tolerated(0.45)	neutral(0.449)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LHX8	431707	genome.wustl.edu	37	1	75622730	75622730	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001933.1	+1	validated	p.T321	0.858	214	0%	93	24.7%	0	-	-	-	-	NULL
MSH4	4438	genome.wustl.edu	37	1	76269502	76269502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002440.2	+1	validated	p.D111Y	0.028	98	0%	99	26.3%	0	-	benign(0.417)	deleterious(0.01)	deleterious(0.540)	NULL
MSH4	4438	genome.wustl.edu	37	1	76355016	76355016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002440.2	+1	validated	p.E730K	1.000	70	0%	65	27.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
MSH4	4438	genome.wustl.edu	37	1	76363591	76363591	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002440.2	+1	validated	e18-1	1.000	133	0%	80	31.2%	0	-	-	-	-	-
MSH4	4438	genome.wustl.edu	37	1	76363690	76363690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002440.2	+1	validated	p.K818N	0.540	128	0%	82	29.3%	0	-	benign(0.005)	tolerated(0.25)	neutral(0.037)	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
MSH4	4438	genome.wustl.edu	37	1	76363709	76363709	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002440.2	+1	validated	p.E825*	1.000	104	0%	66	27.3%	0	-	-	-	-	HMMPfam_MutS_V,HMMSmart_MUTSac,superfamily_SSF52540
MSH4	4438	genome.wustl.edu	37	1	76378490	76378490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002440.2	+1	validated	p.R910Q	0.930	80	0%	45	31.1%	0	-	benign(0.091)	tolerated(0.27)	neutral(0.040)	NULL
MSH4	4438	genome.wustl.edu	37	1	76378491	76378491	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002440.2	+1	validated	p.R910	0.340	79	0%	44	36.4%	0	-	-	-	-	NULL
AK5	26289	genome.wustl.edu	37	1	77763393	77763393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174858.1	+1	reviewed	p.T189A	1.000	159	0%	147	25.9%	0	-	possibly_damaging(0.459)	tolerated(0.2)	neutral(0.200)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
AK5	26289	genome.wustl.edu	37	1	77806116	77806116	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174858.1	+1	reviewed	p.E252*	1.000	127	0%	71	31%	0	-	-	-	-	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM73A	374986	genome.wustl.edu	37	1	78338771	78338771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198549.2	+1	predicted	p.R549I	1.000	421	0%	670	30%	0	-	possibly_damaging(0.805)	deleterious(0.04)	deleterious(0.652)	HMMPfam_DUF2217
DNAJB4	11080	genome.wustl.edu	37	1	78470843	78470843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007034.3	+1	provisional	p.D17N	1.000	104	0%	51	9.8%	3	33.3%	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
DNAJB4	11080	genome.wustl.edu	37	1	78478793	78478793	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007034.3	+1	provisional	p.F90L	1.000	111	0%	71	29.6%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Chaperone J-domain
PTGFR	5737	genome.wustl.edu	37	1	78959050	78959050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000959.3	+1	reviewed	p.L208M	1.000	157	0%	176	26.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
IFI44L	10964	genome.wustl.edu	37	1	79093951	79093951	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006820.2	+1	validated	p.S117	0.000	90	0%	23	34.8%	5	0%	-	-	-	NULL
IFI44	10561	genome.wustl.edu	37	1	79125147	79125147	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006417.4	+1	validated	p.R331*	0.216	135	0%	53	20.8%	44	13.6%	-	-	-	superfamily_SSF52540
ENSG00000249107	0	genome.wustl.edu	37	1	79129543	79129543	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513923	-1	known	NULL	0.001	155	0%	91	37.4%	59	45.7%	-	-	-	-
LPHN2	23266	genome.wustl.edu	37	1	82432215	82432215	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000449420	+1	known	p.S621*	1.000	123	0%	120	35%	21	33.3%	-	-	-	NULL
TTLL7	79739	genome.wustl.edu	37	1	84372116	84372116	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024686.4	-1	validated	p.E675*	1.000	245	0%	71	29.6%	1	100%	-	-	-	NULL
TTLL7	79739	genome.wustl.edu	37	1	84408211	84408211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024686.4	-1	validated	p.L220I	1.000	111	0%	48	35.4%	2	50%	probably_damaging(0.967)	tolerated(0.08)	deleterious(0.709)	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
DNASE2B	58511	genome.wustl.edu	37	1	84874135	84874135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021233.2	+1	reviewed	p.Y107H	1.000	126	0%	57	12.3%	0	-	benign(0.327)	deleterious(0)	deleterious(0.547)	HMMPfam_DNase_II
RPF1	80135	genome.wustl.edu	37	1	84962014	84962014	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025065.6	+1	validated	p.T323	1.000	128	0%	117	28.2%	43	37.2%	-	-	-	NULL
SSX2IP	117178	genome.wustl.edu	37	1	85116179	85116179	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014021.3	-1	reviewed	p.S512	0.207	77	0%	96	26%	20	45%	-	-	-	NULL
MCOLN2	255231	genome.wustl.edu	37	1	85405376	85405376	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153259.2	-1	reviewed	p.N324H	0.002	86	0%	38	39.5%	1	0%	benign(0.008)	tolerated(0.17)	neutral(0.059)	NULL
MCOLN2	255231	genome.wustl.edu	37	1	85412774	85412774	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153259.2	-1	reviewed	p.I263	0.971	312	0%	171	35.1%	0	-	-	-	-	NULL
MCOLN3	55283	genome.wustl.edu	37	1	85498634	85498634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018298.9	-1	validated	p.F186V	0.999	263	0%	192	28.6%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
WDR63	126820	genome.wustl.edu	37	1	85551539	85551539	+	Missense_Mutation	SNP	G	G	A	rs145219148	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145172.3	+1	validated	p.R189Q	0.110	153	0%	81	37%	0	-	probably_damaging(0.963)	tolerated(0.1)	deleterious(0.692)	superfamily_WD40 repeat-like
WDR63	126820	genome.wustl.edu	37	1	85587440	85587440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145172.3	+1	validated	p.E642K	1.000	232	0%	101	35.6%	0	-	possibly_damaging(0.796)	tolerated(0.18)	neutral(0.355)	superfamily_WD40 repeat-like
SYDE2	84144	genome.wustl.edu	37	1	85648151	85648151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032184.1	-1	validated	p.F725C	1.000	117	0%	28	32.1%	0	-	possibly_damaging(0.714)	deleterious(0.05)	deleterious(0.603)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CYR61	3491	genome.wustl.edu	37	1	86048591	86048591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001554.4	+1	validated	p.E338K	1.000	49	0%	82	34.1%	102	25.4%	benign(0.313)	deleterious(0.03)	neutral(0.462)	HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot
ZNHIT6	54680	genome.wustl.edu	37	1	86173543	86173543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017953.3	-1	validated	p.V142A	0.985	385	0%	458	32.1%	22	31.8%	possibly_damaging(0.469)	deleterious(0)	deleterious(0.599)	NULL
COL24A1	255631	genome.wustl.edu	37	1	86282563	86282563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152890.5	-1	validated	p.L1287I	0.997	124	0%	108	29.6%	2	0%	benign(0.013)	tolerated(0.21)	neutral(0.044)	HMMPfam_Collagen
COL24A1	255631	genome.wustl.edu	37	1	86591087	86591087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152890.5	-1	validated	p.R311I	0.039	150	0%	78	20.5%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
ODF2L	57489	genome.wustl.edu	37	1	86814481	86814481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020729.2	-1	validated	p.K629N	1.000	119	0%	74	29.7%	1	0%	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	NULL
CLCA2	9635	genome.wustl.edu	37	1	86921078	86921078	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006536.5	+1	reviewed	p.Y900	0.026	212	0%	99	40.4%	0	-	-	-	-	NULL
CLCA1	1179	genome.wustl.edu	37	1	86942157	86942157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001285.3	+1	reviewed	p.H160N	1.000	152	0%	78	23.1%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_CLCA_N
CLCA1	1179	genome.wustl.edu	37	1	86954728	86954728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001285.3	+1	reviewed	p.T411M	0.998	128	0%	54	18.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CLCA4	22802	genome.wustl.edu	37	1	87031041	87031041	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012128.3	+1	reviewed	p.S214	0.870	114	0%	58	10.3%	0	-	-	-	-	HMMPfam_CLCA_N
CLCA4	22802	genome.wustl.edu	37	1	87041204	87041204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012128.3	+1	reviewed	p.L625I	0.998	138	0%	48	35.4%	0	-	benign(0.069)	tolerated(0.19)	neutral(0.054)	HMMPfam_DUF1973
SH3GLB1	51100	genome.wustl.edu	37	1	87185204	87185204	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016009.3	+1	validated	p.E77*	1.000	88	0%	79	26.6%	21	14.2%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
HS2ST1	9653	genome.wustl.edu	37	1	87549891	87549891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012262.3	+1	reviewed	p.K126N	1.000	157	0%	78	28.2%	19	26.3%	benign(0.002)	tolerated(0.68)	neutral(0.002)	HMMPfam_HS2ST,superfamily_P-loop containing nucleoside triphosphate hydrolases
PKN2	5586	genome.wustl.edu	37	1	89271636	89271636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006256.2	+1	validated	p.R580Q	0.998	122	0%	69	34.8%	7	57.1%	benign(0.056)	tolerated(0.39)	neutral(0.019)	NULL
CCBL2	56267	genome.wustl.edu	37	1	89427189	89427189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000260508	-1	known	p.K181Q	1.000	242	0%	62	33.9%	26	73%	benign(0.101)	tolerated(0.19)	neutral(0.057)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
GBP3	2635	genome.wustl.edu	37	1	89479842	89479842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018284.2	-1	reviewed	p.F183L	0.262	127	0%	110	32.7%	28	3.5%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_SSF52540
GBP2	2634	genome.wustl.edu	37	1	89573928	89573928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004120.3	-1	reviewed	p.R569I	0.000	277	0%	211	32.2%	43	4.6%	benign(0.008)	tolerated(0.18)	neutral(0.056)	HMMPfam_GBP_C,superfamily_GBP
GBP2	2634	genome.wustl.edu	37	1	89573944	89573944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004120.3	-1	reviewed	p.E564K	0.000	255	0%	203	25.6%	63	4.7%	benign(0)	tolerated(1)	-	HMMPfam_GBP_C,superfamily_GBP
GBP4	115361	genome.wustl.edu	37	1	89652169	89652169	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052941.4	-1	validated	p.E518	0.000	298	0%	136	26.5%	14	0%	-	-	-	HMMPfam_GBP_C,superfamily_GBP
GBP4	115361	genome.wustl.edu	37	1	89652768	89652768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052941.4	-1	validated	p.Q476H	0.033	134	0%	98	36.7%	29	20.6%	probably_damaging(0.984)	deleterious(0.05)	deleterious(0.776)	HMMPfam_GBP_C,superfamily_GBP
GBP4	115361	genome.wustl.edu	37	1	89657165	89657165	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052941.4	-1	validated	p.S232*	0.006	105	0%	48	31.2%	20	0%	-	-	-	HMMPfam_GBP,superfamily_SSF52540
GBP6	163351	genome.wustl.edu	37	1	89834293	89834293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198460.2	+1	validated	p.Q61H	0.989	158	0%	101	25.7%	0	-	possibly_damaging(0.864)	deleterious(0.01)	deleterious(0.740)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
GBP6	163351	genome.wustl.edu	37	1	89846084	89846084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198460.2	+1	validated	p.K255N	0.001	145	0%	88	22.7%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC8B	23507	genome.wustl.edu	37	1	90048378	90048378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134476.1	+1	validated	p.P57T	1.000	108	0%	51	29.4%	11	54.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
LRRC8C	84230	genome.wustl.edu	37	1	90179289	90179289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032270.4	+1	validated	p.R387I	1.000	51	0%	48	29.2%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
LRRC8D	55144	genome.wustl.edu	37	1	90398641	90398641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134479.1	+1	validated	p.A5V	1.000	143	0%	129	35.7%	21	47.6%	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90399870	90399870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134479.1	+1	validated	p.D415N	1.000	76	0%	62	21%	30	36.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90400589	90400589	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134479.1	+1	validated	p.I654M	0.997	69	0%	53	28.3%	37	35.1%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF52058
ZNF326	284695	genome.wustl.edu	37	1	90478724	90478724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182976.2	+1	validated	p.R285Q	0.983	83	0%	77	27.3%	31	38.7%	probably_damaging(0.988)	tolerated(0.11)	deleterious(0.709)	NULL
ZNF644	84146	genome.wustl.edu	37	1	91403235	91403235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201269.1	-1	validated	p.K1165N	1.000	130	0%	95	29.5%	10	30%	benign(0.027)	deleterious(0)	neutral(0.446)	NULL
HFM1	164045	genome.wustl.edu	37	1	91731603	91731603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017975.3	-1	validated	p.K1315N	0.980	315	0%	186	26.9%	0	-	benign(0.071)	deleterious(0.05)	neutral(0.350)	NULL
HFM1	164045	genome.wustl.edu	37	1	91788701	91788701	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017975.3	-1	validated	p.E828A	1.000	84	0%	87	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec63
HFM1	164045	genome.wustl.edu	37	1	91818152	91818152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017975.3	-1	validated	p.K630E	1.000	117	0%	51	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
HFM1	164045	genome.wustl.edu	37	1	91818159	91818159	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017975.3	-1	validated	p.V627	0.093	120	0%	52	40.4%	0	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDC7	8317	genome.wustl.edu	37	1	91977351	91977351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134419.1	+1	reviewed	p.S148Y	1.000	331	0.6%	160	34.4%	1	0%	possibly_damaging(0.931)	tolerated(0.08)	deleterious(0.677)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TGFBR3	7049	genome.wustl.edu	37	1	92195496	92195496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003243.3	-1	validated	p.K201N	1.000	228	0%	115	31.3%	0	-	possibly_damaging(0.749)	tolerated(0.25)	neutral(0.312)	NULL
BRDT	676	genome.wustl.edu	37	1	92433741	92433741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001726.3	+1	validated	p.E123D	1.000	214	0%	134	34.3%	0	-	possibly_damaging(0.872)	deleterious(0.03)	deleterious(0.704)	HMMSmart_SM00297,superfamily_Bromodomain
BRDT	676	genome.wustl.edu	37	1	92445134	92445134	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001726.3	+1	validated	p.F369	1.000	124	0%	79	34.2%	0	-	-	-	-	HMMSmart_SM00297,superfamily_Bromodomain
EPHX4	253152	genome.wustl.edu	37	1	92508473	92508473	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173567.4	+1	validated	p.I137	0.800	124	0%	73	34.2%	0	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
LOC646817	646817	genome.wustl.edu	37	1	92540513	92540513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_929774.4	-1	model	p.F162L	1.000	37	0%	36	30.6%	0	-	-	-	-	HMMPfam_NAP
KIAA1107	23285	genome.wustl.edu	37	1	92646738	92646738	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015237.2	+1	validated	p.S728	0.000	85	0%	57	31.6%	0	-	-	-	-	NULL
EVI5	7813	genome.wustl.edu	37	1	93169040	93169040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005665.4	-1	validated	p.R203Q	1.000	144	0%	164	67.1%	3	100%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
EVI5	7813	genome.wustl.edu	37	1	93170153	93170153	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005665.4	-1	validated	p.E144*	1.000	267	0%	248	31.5%	1	100%	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
MTF2	22823	genome.wustl.edu	37	1	93592843	93592843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007358.3	+1	validated	p.D326Y	1.000	177	0%	77	35.1%	6	16.6%	possibly_damaging(0.845)	deleterious(0.01)	deleterious(0.730)	NULL
MTF2	22823	genome.wustl.edu	37	1	93602458	93602458	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007358.3	+1	validated	p.I552	1.000	97	0%	64	39.1%	40	52.5%	-	-	-	NULL
TMED5	50999	genome.wustl.edu	37	1	93645610	93645610	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016040.4	-1	validated	e1+1	1.000	29	0%	72	33.3%	3	100%	-	-	-	-
CCDC18	343099	genome.wustl.edu	37	1	93651947	93651947	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206886.2	+1	validated	p.R235*	1.000	107	0%	150	30.7%	0	-	-	-	-	NULL
CCDC18	343099	genome.wustl.edu	37	1	93680450	93680450	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000421014	+1	known	p.E295*	1.000	55	0%	45	22.2%	0	-	benign(0.418)	deleterious(0.01)	deleterious(0.541)	NULL
CCDC18	343099	genome.wustl.edu	37	1	93682248	93682248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206886.2	+1	validated	p.I710R	0.998	103	0%	71	38%	1	0%	possibly_damaging(0.604)	tolerated(0.27)	neutral(0.243)	NULL
CCDC18	343099	genome.wustl.edu	37	1	93698025	93698025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206886.2	+1	validated	p.L897I	0.998	95	0%	76	11.8%	1	0%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	NULL
CCDC18	343099	genome.wustl.edu	37	1	93720073	93720073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206886.2	+1	validated	p.R1200*	1.000	85	0%	33	27.3%	1	0%	-	-	-	superfamily_Prefoldin
FNBP1L	54874	genome.wustl.edu	37	1	93965033	93965033	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000271234	+1	known	p.F11	0.989	100	0%	41	29.3%	38	31.5%	-	-	-	HMMPfam_FCH,HMMSmart_SM00055
BCAR3	8412	genome.wustl.edu	37	1	94033340	94033340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003567.2	-1	reviewed	p.E681D	1.000	157	0%	87	16.1%	20	15%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00147,superfamily_Ras GEF
ABCA4	24	genome.wustl.edu	37	1	94471008	94471008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000350.2	-1	reviewed	p.E2046*	0.991	118	0%	120	33.3%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ABCA4	24	genome.wustl.edu	37	1	94548914	94548914	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000350.2	-1	reviewed	p.I284	1.000	173	0.6%	90	28.9%	0	-	-	-	-	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94639474	94639474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004815.3	-1	validated	p.R1246Q	1.000	99	0%	50	18%	15	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94643202	94643202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004815.3	-1	validated	p.Q957H	0.001	278	0%	133	32.3%	10	20%	possibly_damaging(0.91)	tolerated(0.08)	deleterious(0.662)	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94671238	94671238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004815.3	-1	validated	p.S171L	1.000	98	0%	50	24%	2	100%	benign(0.393)	tolerated(0.08)	neutral(0.426)	NULL
SLC44A3	126969	genome.wustl.edu	37	1	95303289	95303289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114106.1	+1	validated	p.R178*	1.000	238	0%	145	26.2%	47	8.5%	-	-	-	NULL
SLC44A3	126969	genome.wustl.edu	37	1	95310877	95310877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114106.1	+1	validated	p.K310T	0.004	115	0%	97	27.8%	22	90.9%	benign(0.15)	tolerated(0.28)	neutral(0.044)	HMMPfam_DUF580
CNN3	1266	genome.wustl.edu	37	1	95367288	95367288	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001839.3	-1	validated	p.E146	1.000	228	0%	121	33.1%	205	49.2%	-	-	-	superfamily_Calponin-homology domain CH-domain
RWDD3	25950	genome.wustl.edu	37	1	95710119	95710119	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000497058	+1	known	NULL	1.000	116	0%	96	31.2%	18	33.3%	-	-	-	-
PTBP2	58155	genome.wustl.edu	37	1	97278272	97278272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021190.2	+1	reviewed	p.M392I	1.000	120	0%	53	34%	6	66.6%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PTBP2	58155	genome.wustl.edu	37	1	97278312	97278312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021190.2	+1	reviewed	p.R406C	1.000	132	0%	56	28.6%	10	20%	possibly_damaging(0.868)	deleterious(0.03)	deleterious(0.702)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
FRRS1	391059	genome.wustl.edu	37	1	100174544	100174544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013660.2	-1	validated	p.I597M	0.168	130	0%	78	30.8%	9	55.5%	benign(0.019)	-	-	NULL
AGL	178	genome.wustl.edu	37	1	100346288	100346288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000028.2	+1	reviewed	p.L612F	0.022	347	0%	140	33.6%	19	31.5%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_(Trans)glycosidases
HIAT1	64645	genome.wustl.edu	37	1	100515481	100515481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033055.2	+1	validated	p.S34Y	1.000	275	0%	210	21.9%	34	32.3%	benign(0.223)	deleterious(0)	neutral(0.467)	superfamily_MFS_gen_substrate_transporter
CDC14A	8556	genome.wustl.edu	37	1	100889792	100889792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033312.2	+1	reviewed	p.K108N	1.000	183	0%	88	35.2%	2	0%	benign(0.001)	tolerated(0.9)	-	superfamily_(Phosphotyrosine protein) phosphatases II
COL11A1	1301	genome.wustl.edu	37	1	103345304	103345304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080629.2	-1	reviewed	p.S1749A	1.000	81	0%	45	35.6%	0	-	unknown(0)	tolerated(0.77)	-	HMMPfam_COLFI,HMMSmart_COLFI
COL11A1	1301	genome.wustl.edu	37	1	103354310	103354310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080629.2	-1	reviewed	p.P1520L	1.000	127	0%	56	16.1%	0	-	unknown(0)	tolerated(0.06)	-	HMMPfam_Collagen
COL11A1	1301	genome.wustl.edu	37	1	103548444	103548444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080629.2	-1	reviewed	p.R64I	1.000	225	0%	208	25.5%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
AMY2A	279	genome.wustl.edu	37	1	104160098	104160098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000699.2	+1	reviewed	p.F12L	1.000	558	0%	190	23.7%	4	0%	benign(0)	tolerated(1)	-	NULL
NTNG1	22854	genome.wustl.edu	37	1	107867271	107867271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113226.1	+1	validated	p.I205T	1.000	125	0%	63	33.3%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Laminin_N,HMMSmart_SM00136
VAV3	10451	genome.wustl.edu	37	1	108291623	108291623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006113.4	-1	reviewed	p.K490T	1.000	214	0%	98	26.5%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FNDC7	163479	genome.wustl.edu	37	1	109255599	109255599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144937.1	+1	provisional	p.I15S	0.008	376	0%	310	45.2%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
STXBP3	6814	genome.wustl.edu	37	1	109337487	109337487	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007269.2	+1	validated	p.N356	0.971	123	0.8%	51	29.4%	20	40%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
STXBP3	6814	genome.wustl.edu	37	1	109339310	109339310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007269.2	+1	validated	p.R440C	0.983	195	0%	132	26.5%	35	48.5%	possibly_damaging(0.72)	tolerated(0.07)	deleterious(0.580)	HMMPfam_Sec1,superfamily_Sec1-like
GPSM2	29899	genome.wustl.edu	37	1	109472410	109472410	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013296.4	+1	validated	p.I635F	1.000	136	0%	61	32.8%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GoLoco,HMMSmart_GoLoco
WDR47	22911	genome.wustl.edu	37	1	109554274	109554274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142550.1	-1	validated	p.D139Y	1.000	102	0%	86	17.4%	4	50%	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
CELSR2	1952	genome.wustl.edu	37	1	109808788	109808788	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001408.2	+1	reviewed	p.F1991	0.985	54	0%	117	35.9%	19	42.1%	-	-	-	HMMPfam_HRM,HMMSmart_HormR
CELSR2	1952	genome.wustl.edu	37	1	109812637	109812637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001408.2	+1	reviewed	p.F2397S	1.000	221	0%	329	30.1%	55	58.1%	possibly_damaging(0.659)	tolerated(0.15)	deleterious(0.474)	HMMPfam_7tm_2
MYBPHL	343263	genome.wustl.edu	37	1	109839670	109839670	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010985.2	-1	validated	e4+2	1.000	194	0%	164	32.9%	0	-	-	-	-	-
GPR61	83873	genome.wustl.edu	37	1	110086769	110086769	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031936.4	+1	validated	p.G375	1.000	47	0%	75	30.7%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CSF1	1435	genome.wustl.edu	37	1	110459951	110459951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000757.4	+1	validated	p.L88M	0.025	108	0%	137	32.1%	52	21.1%	probably_damaging(0.977)	deleterious(0.05)	deleterious(0.764)	HMMPfam_CSF-1,superfamily_4-helical cytokines
KCNC4	3749	genome.wustl.edu	37	1	110765974	110765974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004978.3	+1	reviewed	p.R356H	1.000	70	0%	80	32.5%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RBM15	64783	genome.wustl.edu	37	1	110882424	110882424	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022768.4	+1	validated	p.N133H	1.000	26	0%	38	34.2%	2	0%	possibly_damaging(0.634)	tolerated(0.08)	deleterious(0.522)	NULL
PROK1	84432	genome.wustl.edu	37	1	110998862	110998862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032414.2	+1	validated	p.F69L	0.999	66	0%	101	39.6%	0	-	possibly_damaging(0.889)	deleterious(0.01)	deleterious(0.755)	HMMPfam_Prokineticin,superfamily_SSF57190
KCNA3	3738	genome.wustl.edu	37	1	111217026	111217026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002232.3	-1	reviewed	p.R136C	1.000	35	0%	60	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
LRIF1	55791	genome.wustl.edu	37	1	111492509	111492509	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018372.3	-1	validated	p.E611	0.005	227	0%	156	27.6%	3	0%	-	-	-	NULL
LRIF1	55791	genome.wustl.edu	37	1	111494075	111494075	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018372.3	-1	validated	p.I477	0.176	275	0%	135	31.1%	7	71.4%	-	-	-	NULL
CEPT1	10390	genome.wustl.edu	37	1	111702063	111702063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007794.1	+1	reviewed	p.A134V	1.000	241	0%	199	32.7%	10	10%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_CDP-OH_P_transf
C1orf88	128344	genome.wustl.edu	37	1	111890344	111890344	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181643.4	+1	validated	p.G70*	1.000	139	0%	279	31.5%	1	0%	-	-	-	NULL
OVGP1	5016	genome.wustl.edu	37	1	111968035	111968035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002557.3	-1	reviewed	p.S96Y	1.000	198	0%	107	21.5%	5	60%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
ADORA3	140	genome.wustl.edu	37	1	112042689	112042689	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000677.3	-1	reviewed	p.I280	0.903	74	0%	59	15.3%	5	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RAP1A	5906	genome.wustl.edu	37	1	112238014	112238014	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010935.1	+1	reviewed	p.E37*	1.000	115	0%	71	36.6%	85	28.2%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM212B	55924	genome.wustl.edu	37	1	112270360	112270360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019099.4	-1	validated	p.E42K	1.000	52	0%	62	38.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KCND3	3752	genome.wustl.edu	37	1	112323370	112323370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004980.3	-1	reviewed	p.S438L	1.000	75	0%	51	21.6%	1	0%	benign(0.045)	deleterious(0.02)	neutral(0.386)	NULL
CTTNBP2NL	55917	genome.wustl.edu	37	1	112998846	112998846	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018704.2	+1	validated	p.I244	0.310	107	0.9%	116	38.8%	11	27.2%	-	-	-	HMMPfam_CortBP2
CTTNBP2NL	55917	genome.wustl.edu	37	1	112999403	112999403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018704.2	+1	validated	p.S430L	0.971	85	0%	77	37.7%	24	58.3%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	HMMPfam_CortBP2
WNT2B	7482	genome.wustl.edu	37	1	113057518	113057518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024494.2	+1	reviewed	p.R69*	1.000	51	0%	74	29.7%	0	-	-	-	-	NULL
CAPZA1	829	genome.wustl.edu	37	1	113192042	113192042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006135.2	+1	reviewed	p.V36I	1.000	184	0%	136	33.8%	75	46.6%	benign(0.067)	tolerated(0.1)	neutral(0.291)	HMMPfam_F-actin_cap_A,superfamily_SSF90096
CAPZA1	829	genome.wustl.edu	37	1	113201661	113201661	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006135.2	+1	reviewed	p.I148	1.000	189	0%	107	18.7%	82	26.8%	-	-	-	HMMPfam_F-actin_cap_A,superfamily_SSF90096
LRIG2	9860	genome.wustl.edu	37	1	113636187	113636187	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014813.1	+1	provisional	e4+1	1.000	95	0%	94	36.2%	0	-	-	-	-	-
LRIG2	9860	genome.wustl.edu	37	1	113657197	113657197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014813.1	+1	provisional	p.F743L	1.000	113	0%	93	23.7%	12	50%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
RSBN1	54665	genome.wustl.edu	37	1	114308700	114308700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018364.3	-1	validated	p.D771Y	1.000	198	0%	225	33.8%	11	54.5%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
RSBN1	54665	genome.wustl.edu	37	1	114340489	114340489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018364.3	-1	validated	p.E291D	0.994	202	0%	117	41.9%	7	28.5%	benign(0.009)	tolerated(0.25)	neutral(0.037)	NULL
PTPN22	26191	genome.wustl.edu	37	1	114380636	114380636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015967.4	-1	reviewed	p.E462D	0.001	128	0%	111	32.4%	3	0%	benign(0.079)	tolerated(0.41)	neutral(0.020)	NULL
PTPN22	26191	genome.wustl.edu	37	1	114380745	114380745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015967.4	-1	reviewed	p.S426Y	0.003	127	0%	82	34.1%	2	0%	possibly_damaging(0.592)	deleterious(0.01)	deleterious(0.610)	NULL
PTPN22	26191	genome.wustl.edu	37	1	114380974	114380974	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015967.4	-1	reviewed	p.E350*	0.001	317	0%	234	27.8%	2	0%	-	-	-	NULL
BCL2L15	440603	genome.wustl.edu	37	1	114429932	114429932	+	Missense_Mutation	SNP	G	G	T	rs185505258	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010922.2	-1	validated	p.F22L	0.929	256	0%	174	11.5%	1	0%	unknown(0)	deleterious(0)	-	NULL
AP4B1	10717	genome.wustl.edu	37	1	114440547	114440547	+	Missense_Mutation	SNP	C	C	T	rs145803736	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006594.2	-1	validated	p.R406Q	1.000	49	0%	47	27.7%	46	45.6%	possibly_damaging(0.827)	deleterious(0.03)	deleterious(0.678)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
LOC100287722	100287722	genome.wustl.edu	37	1	114447348	114447348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342103.1	+1	model	p.K134N	0.000	74	0%	133	33.8%	16	25%	-	-	-	NULL
TRIM33	51592	genome.wustl.edu	37	1	114945456	114945456	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015906.3	-1	reviewed	p.E940*	1.000	85	0%	94	30.9%	5	40%	-	-	-	superfamily_Bromodomain
TRIM33	51592	genome.wustl.edu	37	1	114948207	114948207	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015906.3	-1	reviewed	p.R865*	1.000	204	0%	126	37.3%	9	22.2%	-	-	-	NULL
BCAS2	10286	genome.wustl.edu	37	1	115112680	115112680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005872.2	-1	validated	p.D162Y	1.000	269	0%	96	21.9%	52	38.4%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_BCAS2
DENND2C	163259	genome.wustl.edu	37	1	115168161	115168161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198459.3	-1	validated	p.L149M	0.168	100	0%	38	18.4%	0	-	benign(0.041)	tolerated(0.22)	neutral(0.045)	NULL
AMPD1	270	genome.wustl.edu	37	1	115216535	115216535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000036.2	-1	reviewed	p.T657A	1.000	129	0%	201	30.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_A_deaminase,superfamily_SSF51556
CSDE1	7812	genome.wustl.edu	37	1	115268887	115268887	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130523.1	-1	validated	p.N544H	1.000	84	0%	96	31.2%	142	69%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
CSDE1	7812	genome.wustl.edu	37	1	115275287	115275287	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130523.1	-1	validated	p.R345*	1.000	222	0%	138	26.8%	104	3.8%	-	-	-	NULL
SYCP1	6847	genome.wustl.edu	37	1	115438113	115438113	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003176.2	+1	validated	p.E435*	1.000	106	0%	127	29.1%	0	-	-	-	-	HMMPfam_SCP-1
TSHB	7252	genome.wustl.edu	37	1	115576076	115576076	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000549.3	+1	reviewed	p.I31	0.120	149	0%	106	46.2%	0	-	-	-	-	HMMSmart_SM00068,HMMPfam_Cys_knot,superfamily_Cystine-knot cytokines
VANGL1	81839	genome.wustl.edu	37	1	116202372	116202372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138959.2	+1	reviewed	p.S61Y	0.581	75	0%	62	33.9%	14	57.1%	possibly_damaging(0.9)	deleterious(0.03)	deleterious(0.721)	HMMPfam_Strabismus
VANGL1	81839	genome.wustl.edu	37	1	116206633	116206633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138959.2	+1	reviewed	p.R186C	1.000	331	0.3%	235	30.6%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Strabismus
CASQ2	845	genome.wustl.edu	37	1	116245599	116245599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001232.3	-1	reviewed	p.E319D	1.000	75	0%	50	42%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Calsequestrin,superfamily_Thioredoxin-like
SLC22A15	55356	genome.wustl.edu	37	1	116569517	116569517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018420.2	+1	validated	p.S201L	1.000	208	0.5%	128	32.8%	2	0%	benign(0.084)	tolerated(0.15)	neutral(0.247)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
MAN1A2	10905	genome.wustl.edu	37	1	117944875	117944875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006699.3	+1	validated	p.E124Q	1.000	115	0%	58	8.6%	9	0%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
MAN1A2	10905	genome.wustl.edu	37	1	117944905	117944905	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006699.3	+1	validated	p.R134*	0.951	116	0.9%	76	30.3%	12	25%	-	-	-	NULL
FAM46C	54855	genome.wustl.edu	37	1	118166276	118166276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017709.3	+1	validated	p.E262D	0.989	72	0%	60	33.3%	32	21.8%	possibly_damaging(0.635)	tolerated(0.84)	neutral(0.223)	HMMPfam_DUF1693
WDR3	10885	genome.wustl.edu	37	1	118495575	118495575	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006784.2	+1	reviewed	p.E720*	1.000	194	0%	104	37.5%	19	5.2%	-	-	-	superfamily_WD40 repeat-like
SPAG17	200162	genome.wustl.edu	37	1	118537067	118537067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206996.2	-1	validated	p.L1714I	1.000	199	0%	85	14.1%	0	-	benign(0.367)	deleterious(0)	deleterious(0.561)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118566083	118566083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206996.2	-1	validated	p.L1305I	1.000	119	0%	39	48.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HSD3B2	3284	genome.wustl.edu	37	1	119962159	119962159	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000198.3	+1	reviewed	p.V87	0.001	98	0%	60	20%	0	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
HSD3B2	3284	genome.wustl.edu	37	1	119965241	119965241	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000198.3	+1	reviewed	p.*373fs	0.971	-	-	-	-	-	-	-	-	-	NULL
PHGDH	26227	genome.wustl.edu	37	1	120279853	120279853	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006623.3	+1	reviewed	p.F303	0.010	90	0%	83	26.5%	432	46%	-	-	-	HMMPfam_2-Hacid_dh
HMGCS2	3158	genome.wustl.edu	37	1	120295908	120295908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005518.3	-1	reviewed	p.A430D	1.000	46	0%	40	40%	0	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
NBPF7	343505	genome.wustl.edu	37	1	120384123	120384123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001047980.1	-1	predicted	p.L147I	0.011	129	0%	81	37%	0	-	-	-	-	NULL
FAM72B	653820	genome.wustl.edu	37	1	120842038	120842038	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100910.1	+1	predicted	p.I72	0.991	628	0%	678	7.5%	7	0%	-	-	-	NULL
FCGR1B	2210	genome.wustl.edu	37	1	120927218	120927218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017986.2	-1	validated	p.E254D	0.301	320	0%	497	20.9%	19	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144857618	144857618	+	Missense_Mutation	SNP	C	C	A	rs3845153		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014644.4	-1	validated	p.A2146S	0.793	266	0.4%	151	13.2%	4	25%	benign(0.001)	tolerated(0.68)	neutral(0.002)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144868123	144868123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014644.4	-1	validated	p.D1772E	0.000	226	0%	124	12.1%	5	0%	benign(0)	tolerated(0.85)	neutral(0.001)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144879400	144879400	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014644.4	-1	validated	p.N1350	0.749	221	0%	96	16.7%	0	-	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144879457	144879457	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014644.4	-1	validated	p.P1331	0.029	147	0%	79	10.1%	6	0%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144909928	144909928	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014644.4	-1	validated	p.E754*	1.000	260	0%	128	10.2%	23	4.3%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144915524	144915524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014644.4	-1	validated	p.R634Q	0.995	323	0%	193	16.1%	40	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144946732	144946732	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014644.4	-1	validated	p.E177*	1.000	217	0%	126	14.3%	2	0%	-	-	-	NULL
LIX1L	128077	genome.wustl.edu	37	1	145492293	145492293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153713.1	+1	provisional	p.S172Y	1.000	181	0%	133	24.1%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR89A	653519	genome.wustl.edu	37	1	145818788	145818788	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001097612.1	-1	validated	p.R27	0.997	425	0%	338	31.7%	18	38.8%	-	-	-	NULL
ACP6	51205	genome.wustl.edu	37	1	147131842	147131842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016361.3	-1	validated	p.D90Y	1.000	98	0%	87	18.4%	8	0%	probably_damaging(0.955)	deleterious(0.02)	deleterious(0.782)	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
GJA8	2703	genome.wustl.edu	37	1	147380926	147380926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005267.4	+1	reviewed	p.T282A	0.988	71	0%	85	34.1%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_Connexin50
NBPF14	25832	genome.wustl.edu	37	1	148021593	148021593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015383.1	-1	predicted	p.G201*	0.001	380	0%	162	7.4%	0	-	-	-	-	HMMPfam_DUF1220
OTUD7B	56957	genome.wustl.edu	37	1	149931670	149931670	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020205.2	-1	validated	p.E260*	1.000	252	0%	159	30.8%	15	20%	-	-	-	HMMPfam_OTU
CA14	23632	genome.wustl.edu	37	1	150235799	150235799	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012113.1	+1	reviewed	p.V274	0.998	105	0%	110	29.1%	1	0%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
C1orf51	148523	genome.wustl.edu	37	1	150257075	150257075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144697.2	+1	predicted	p.A197V	1.000	121	0%	144	34.7%	15	40%	possibly_damaging(0.799)	tolerated(0.2)	neutral(0.350)	NULL
RPRD2	23248	genome.wustl.edu	37	1	150444968	150444968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015203.3	+1	validated	p.R1182C	1.000	149	0%	112	32.1%	68	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ECM1	1893	genome.wustl.edu	37	1	150483956	150483956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004425.3	+1	reviewed	p.F244L	0.998	28	0%	51	31.4%	35	2.8%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_Serum albumin-like,HMMPfam_ECM1
MCL1	4170	genome.wustl.edu	37	1	150550786	150550786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021960.3	-1	reviewed	p.L290F	1.000	170	0%	300	31.3%	150	40%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Bcl-2,HMMSmart_SM00337,superfamily_Bcl-2 inhibitors of programmed cell death
LOC100131311	100131311	genome.wustl.edu	37	1	150551487	150551487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001718187.1	+1	model	p.N148S	0.313	27	0%	53	26.4%	132	29.5%	-	-	-	NULL
HORMAD1	84072	genome.wustl.edu	37	1	150675801	150675801	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032132.3	-1	provisional	p.V339	0.696	128	0%	78	42.3%	0	-	-	-	-	NULL
SETDB1	9869	genome.wustl.edu	37	1	150923291	150923291	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145415.1	+1	reviewed	p.F646	1.000	193	0%	157	34.4%	28	21.4%	-	-	-	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
SETDB1	9869	genome.wustl.edu	37	1	150935080	150935080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145415.1	+1	reviewed	p.R1059Q	0.961	93	0%	94	24.5%	50	30%	benign(0.003)	tolerated(0.4)	neutral(0.016)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ANXA9	8416	genome.wustl.edu	37	1	150967083	150967083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003568.2	+1	validated	p.R295C	1.000	195	0%	280	31.8%	12	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Annexin,HMMPfam_Annexin,HMMSmart_ANX
MLLT11	10962	genome.wustl.edu	37	1	151039956	151039956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006818.3	+1	reviewed	p.E86K	1.000	39	0%	53	37.7%	21	33.3%	benign(0.153)	deleterious(0.04)	neutral(0.362)	NULL
SEMA6C	10500	genome.wustl.edu	37	1	151112165	151112165	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030913.4	-1	reviewed	p.F82	1.000	70	0%	179	35.2%	2	0%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6C	10500	genome.wustl.edu	37	1	151112473	151112473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030913.4	-1	reviewed	p.R71Q	1.000	42	0%	70	35.7%	4	50%	possibly_damaging(0.685)	tolerated(0.15)	deleterious(0.485)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SCNM1	79005	genome.wustl.edu	37	1	151140699	151140699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024041.2	+1	validated	p.R160G	0.194	102	0%	87	39.1%	52	40.3%	benign(0.193)	tolerated(0.46)	neutral(0.030)	NULL
PI4KB	5298	genome.wustl.edu	37	1	151282713	151282713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002651.1	-1	provisional	p.E322K	1.000	71	0%	52	28.8%	12	33.3%	benign(0.001)	tolerated(0.84)	neutral(0.001)	NULL
CGN	57530	genome.wustl.edu	37	1	151506588	151506588	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020770.2	+1	validated	p.R960	0.437	25	0%	24	33.3%	14	57.1%	-	-	-	NULL
CGN	57530	genome.wustl.edu	37	1	151509357	151509359	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020770.2	+1	validated	p.K1154in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TUFT1	7286	genome.wustl.edu	37	1	151547444	151547444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020127.2	+1	validated	p.R261W	0.939	53	0%	20	20%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CELF3	11189	genome.wustl.edu	37	1	151688415	151688415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007185.4	-1	reviewed	p.E28K	1.000	90	0%	179	28.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RORC	6097	genome.wustl.edu	37	1	151787393	151787393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005060.3	-1	reviewed	p.E269D	0.999	56	1.8%	74	27%	3	33.3%	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_Nuclear receptor ligand-binding domain
THEM5	284486	genome.wustl.edu	37	1	151820328	151820328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182578.3	-1	validated	p.V196M	0.001	70	0%	70	14.3%	1	0%	possibly_damaging(0.822)	deleterious(0.04)	deleterious(0.660)	HMMPfam_4HBT,superfamily_SSF54637
THEM5	284486	genome.wustl.edu	37	1	151824925	151824925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182578.3	-1	validated	p.F45S	1.000	84	0%	80	26.3%	0	-	benign(0.033)	deleterious(0)	neutral(0.446)	NULL
TCHHL1	126637	genome.wustl.edu	37	1	152057629	152057629	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008536.1	-1	provisional	p.I843	0.003	321	0.3%	324	15.4%	0	-	-	-	-	NULL
TCHHL1	126637	genome.wustl.edu	37	1	152058118	152058118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008536.1	-1	provisional	p.F680L	0.000	270	0%	263	27.4%	0	-	benign(0.147)	tolerated(0.54)	neutral(0.020)	NULL
TCHHL1	126637	genome.wustl.edu	37	1	152058833	152058833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008536.1	-1	provisional	p.S442Y	0.118	244	0%	343	32.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FLG	2312	genome.wustl.edu	37	1	152281163	152281163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002016.1	-1	reviewed	p.P2067S	0.000	359	0%	252	18.3%	0	-	unknown(0)	tolerated(1)	-	NULL
FLG	2312	genome.wustl.edu	37	1	152283022	152283022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002016.1	-1	reviewed	p.S1447Y	0.000	266	0%	218	31.7%	0	-	possibly_damaging(0.741)	deleterious(0.05)	deleterious(0.617)	NULL
FLG2	388698	genome.wustl.edu	37	1	152325815	152325815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014342.2	-1	provisional	p.H1483N	0.001	407	0%	220	29.1%	0	-	unknown(0)	tolerated(0.17)	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152329372	152329372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014342.2	-1	provisional	p.S297Y	1.000	133	0%	136	34.6%	0	-	unknown(0)	deleterious(0)	-	NULL
LCE3D	84648	genome.wustl.edu	37	1	152552328	152552328	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032563.1	-1	validated	p.C29G	0.980	219	0%	184	29.3%	0	-	unknown(0)	-	-	NULL
LCE2C	353140	genome.wustl.edu	37	1	152648721	152648721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178429.2	+1	validated	p.R77M	0.996	124	0%	101	26.7%	0	-	unknown(0)	-	-	NULL
LCE2A	353139	genome.wustl.edu	37	1	152671633	152671633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178428.3	+1	validated	p.D86N	0.004	63	0%	86	39.5%	0	-	unknown(0)	-	-	NULL
LCE1A	353131	genome.wustl.edu	37	1	152800068	152800068	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178348.1	+1	validated	p.V40	0.105	172	0%	160	31.2%	0	-	-	-	-	NULL
IVL	3713	genome.wustl.edu	37	1	152882445	152882445	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005547.2	+1	reviewed	p.K58Q	0.000	57	0%	42	23.8%	0	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Involucrin_N
IVL	3713	genome.wustl.edu	37	1	152882507	152882507	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005547.2	+1	reviewed	p.Q78	0.003	45	0%	45	24.4%	0	-	-	-	-	NULL
IVL	3713	genome.wustl.edu	37	1	152882631	152882631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005547.2	+1	reviewed	p.N120D	0.000	82	0%	55	12.7%	0	-	unknown(0)	tolerated(0.42)	-	NULL
S100A16	140576	genome.wustl.edu	37	1	153580538	153580538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080388.1	-1	provisional	p.K30N	1.000	67	0%	95	29.5%	141	40.4%	benign(0.141)	deleterious(0.01)	neutral(0.418)	HMMPfam_S_100,superfamily_EF-hand
INTS3	65123	genome.wustl.edu	37	1	153742750	153742750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023015.3	+1	validated	p.E822D	1.000	164	0%	287	29.3%	74	45.9%	benign(0.003)	tolerated(0.62)	neutral(0.004)	NULL
NUP210L	91181	genome.wustl.edu	37	1	154029383	154029383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207308.2	-1	validated	p.L1050I	0.917	171	0%	134	32.1%	0	-	probably_damaging(0.979)	tolerated(0.55)	neutral(0.429)	NULL
NUP210L	91181	genome.wustl.edu	37	1	154091202	154091202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207308.2	-1	validated	p.K470T	0.991	229	0%	211	35.5%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	superfamily_Invasin_intimin
ATP8B2	57198	genome.wustl.edu	37	1	154315399	154315399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020452.3	+1	reviewed	p.S505F	0.967	61	0%	100	35%	2	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
IL6R	3570	genome.wustl.edu	37	1	154401824	154401824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000565.2	+1	reviewed	p.R80G	0.001	54	0%	71	33.8%	9	22.2%	possibly_damaging(0.64)	tolerated(0.22)	neutral(0.266)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TDRD10	126668	genome.wustl.edu	37	1	154517320	154517320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098475.1	+1	validated	p.D283Y	0.350	222	0%	241	12.4%	0	-	probably_damaging(1)	-	-	HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT
CHRNB2	1141	genome.wustl.edu	37	1	154543885	154543885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000748.2	+1	reviewed	p.D196N	1.000	152	0%	229	29.3%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
KCNN3	3782	genome.wustl.edu	37	1	154698462	154698462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002249.4	-1	reviewed	p.R544Q	1.000	76	0%	98	25.5%	26	3.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Small-conductance potassium channel,HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
KCNN3	3782	genome.wustl.edu	37	1	154841557	154841557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002249.4	-1	reviewed	p.I295S	1.000	254	0%	351	26.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_SK_channel
KCNN3	3782	genome.wustl.edu	37	1	154841827	154841827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002249.4	-1	reviewed	p.G205D	1.000	155	0%	184	35.3%	2	100%	benign(0.076)	deleterious(0.02)	neutral(0.389)	NULL
ADAM15	8751	genome.wustl.edu	37	1	155028926	155028926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207197.1	+1	reviewed	p.F327V	0.998	129	0%	251	25.5%	132	57.5%	possibly_damaging(0.731)	tolerated(0.54)	neutral(0.275)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM15	8751	genome.wustl.edu	37	1	155031201	155031201	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207197.1	+1	reviewed	p.R645*	0.006	116	0%	180	27.8%	202	5.4%	-	-	-	HMMSmart_SM00608
MTX1	4580	genome.wustl.edu	37	1	155178721	155178721	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002455.3	+1	validated	p.R42	0.000	10	0%	25	36%	1	100%	-	-	-	NULL
SCAMP3	10067	genome.wustl.edu	37	1	155231472	155231472	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005698.2	-1	reviewed	p.V40	1.000	73	0%	134	25.4%	61	6.5%	-	-	-	NULL
HCN3	57657	genome.wustl.edu	37	1	155247650	155247650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020897.1	+1	validated	p.S90N	1.000	29	0%	58	50%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans_N,superfamily_SSF81324
PKLR	5313	genome.wustl.edu	37	1	155261574	155261574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000298.5	-1	reviewed	p.R531C	0.998	73	0%	111	10.8%	0	-	possibly_damaging(0.925)	deleterious(0.05)	deleterious(0.719)	HMMPfam_PK_C,superfamily_PK C-terminal domain-like
PKLR	5313	genome.wustl.edu	37	1	155265336	155265336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000392414	-1	known	p.T125M	0.996	28	0%	54	35.2%	0	-	-	-	-	HMMPfam_PK,superfamily_Phosphoenolpyruvate/pyruvate domain
FDPS	2224	genome.wustl.edu	37	1	155279870	155279870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135821.1	+1	reviewed	p.Q71H	1.000	112	0%	159	35.8%	170	50.5%	benign(0.021)	tolerated(0.05)	neutral(0.346)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155491082	155491082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018489.2	-1	reviewed	p.E77*	1.000	252	0%	161	15.5%	1	100%	-	-	-	NULL
YY1AP1	55249	genome.wustl.edu	37	1	155629836	155629836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139118.1	-1	reviewed	p.S668Y	0.347	161	0%	118	42.4%	78	38.4%	possibly_damaging(0.942)	deleterious(0.04)	deleterious(0.736)	NULL
GON4L	54856	genome.wustl.edu	37	1	155722107	155722107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037533.1	-1	validated	p.E2038D	0.055	128	0%	139	15.8%	10	30%	benign(0.282)	deleterious(0.02)	deleterious(0.470)	NULL
GON4L	54856	genome.wustl.edu	37	1	155727049	155727049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037533.1	-1	validated	p.F1773L	1.000	83	0%	67	20.9%	22	31.8%	probably_damaging(0.987)	tolerated(0.13)	deleterious(0.689)	HMMPfam_PAH,superfamily_PAH2 domain
CCT3	7203	genome.wustl.edu	37	1	156288809	156288809	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005998.3	-1	reviewed	e8-1	1.000	55	0%	73	30.1%	0	-	-	-	-	-
BCAN	63827	genome.wustl.edu	37	1	156618362	156618362	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021948.3	+1	validated	p.E258*	1.000	34	0%	44	25%	0	-	-	-	-	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
MRPL24	79590	genome.wustl.edu	37	1	156708395	156708395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024540.3	-1	reviewed	p.K34N	1.000	59	0%	84	14.3%	79	20.2%	possibly_damaging(0.44)	tolerated(0.45)	neutral(0.155)	superfamily_Transl_SH3_like
INSRR	3645	genome.wustl.edu	37	1	156821210	156821210	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014215.1	-1	validated	p.Q367	1.000	101	0%	216	17.6%	0	-	-	-	-	HMMPfam_Recep_L_domain,superfamily_SSF52058
LRRC71	149499	genome.wustl.edu	37	1	156894259	156894259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144702.2	+1	validated	p.E118D	1.000	35	0%	57	12.3%	0	-	probably_damaging(0.979)	tolerated(0.11)	deleterious(0.694)	superfamily_RNI-like
FCRL5	83416	genome.wustl.edu	37	1	157512747	157512747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031281.2	-1	validated	p.S342I	0.001	89	0%	64	39.1%	15	0%	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL4	83417	genome.wustl.edu	37	1	157557351	157557351	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031282.2	-1	reviewed	e5-1	0.982	104	0%	58	29.3%	0	-	-	-	-	-
FCRL3	115352	genome.wustl.edu	37	1	157666043	157666043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052939.3	-1	reviewed	p.L307I	0.853	109	0%	42	26.2%	3	0%	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL2	79368	genome.wustl.edu	37	1	157716542	157716542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030764.3	-1	reviewed	p.S504Y	0.000	218	0%	96	35.4%	10	0%	unknown(0)	deleterious(0.04)	-	NULL
FCRL2	79368	genome.wustl.edu	37	1	157740241	157740241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030764.3	-1	reviewed	p.L90I	0.000	150	0%	109	32.1%	0	-	possibly_damaging(0.84)	tolerated(0.41)	neutral(0.337)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD1D	912	genome.wustl.edu	37	1	158152072	158152072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001766.3	+1	reviewed	p.E193D	0.000	56	0%	94	29.8%	7	14.2%	benign(0)	tolerated(1)	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
CD1C	911	genome.wustl.edu	37	1	158262105	158262105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001765.2	+1	reviewed	p.R187Q	0.000	112	0%	48	20.8%	2	0%	possibly_damaging(0.786)	tolerated(0.55)	neutral(0.301)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
CD1E	913	genome.wustl.edu	37	1	158325164	158325164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030893.2	+1	reviewed	p.G144W	0.997	91	0%	105	21.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MHC antigen-recognition domain
OR10T2	128360	genome.wustl.edu	37	1	158368344	158368344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004475.1	-1	provisional	p.L305I	0.005	31	0%	40	27.5%	0	-	benign(0.034)	tolerated(0.5)	neutral(0.012)	superfamily_SSF81321
OR10T2	128360	genome.wustl.edu	37	1	158368795	158368795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004475.1	-1	provisional	p.F154L	0.000	79	0%	37	16.2%	0	-	possibly_damaging(0.946)	tolerated(0.59)	neutral(0.395)	HMMPfam_7tm_1,superfamily_SSF81321
OR10T2	128360	genome.wustl.edu	37	1	158369070	158369070	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004475.1	-1	provisional	p.F63V	0.112	127	0%	77	28.6%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_7tm_1,superfamily_SSF81321
OR10K2	391107	genome.wustl.edu	37	1	158389734	158389734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004476.1	-1	provisional	p.T308I	0.000	64	0%	34	29.4%	0	-	benign(0.019)	tolerated(0.24)	neutral(0.038)	NULL
OR10R2	343406	genome.wustl.edu	37	1	158450173	158450173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004472.1	+1	provisional	p.A169E	0.011	164	0%	95	28.4%	0	-	benign(0.103)	tolerated(0.11)	neutral(0.280)	HMMPfam_7tm_1,superfamily_SSF81321
OR6P1	128366	genome.wustl.edu	37	1	158532670	158532670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000334632	-1	known	p.A242V	0.170	88	0%	65	36.9%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
OR10X1	128367	genome.wustl.edu	37	1	158549602	158549602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004477.1	-1	provisional	p.L30I	0.288	71	0%	34	23.5%	0	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158587355	158587355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003126.2	-1	reviewed	p.T2191N	1.000	155	0%	85	17.6%	0	-	possibly_damaging(0.662)	tolerated(0.07)	deleterious(0.553)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158606513	158606513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003126.2	-1	reviewed	p.R1743I	0.988	132	0%	53	26.4%	0	-	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158613180	158613180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003126.2	-1	reviewed	p.E1458D	0.183	131	0%	44	20.5%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158644362	158644362	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003126.2	-1	reviewed	p.E406*	1.000	102	0%	50	30%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K3	391114	genome.wustl.edu	37	1	158687789	158687789	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005327.2	-1	validated	p.I55	0.000	65	0%	40	22.5%	0	-	-	-	-	superfamily_SSF81321
OR6N1	128372	genome.wustl.edu	37	1	158735553	158735553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005185.1	-1	provisional	p.R307I	0.289	202	0.5%	102	68.6%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	superfamily_SSF81321
LOC646377	646377	genome.wustl.edu	37	1	158848639	158848639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001725569.1	+1	model	p.L75R	0.094	43	0%	32	15.6%	0	-	-	-	-	HMMPfam_PAAD_DAPIN
IFI16	3428	genome.wustl.edu	37	1	158988347	158988347	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005531.2	+1	reviewed	p.K293T	0.000	103	0%	68	10.3%	15	0%	benign(0.076)	tolerated(0.66)	neutral(0.008)	HMMPfam_HIN
IFI16	3428	genome.wustl.edu	37	1	159019294	159019294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000295809	+1	known	p.P524T	0.001	276	0%	149	24.2%	49	4%	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	NULL
IFI16	3428	genome.wustl.edu	37	1	159019380	159019380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000295809	+1	known	p.F552L	0.001	324	0%	143	28%	39	10.2%	benign(0.043)	tolerated(0.65)	neutral(0.005)	NULL
CADM3	57863	genome.wustl.edu	37	1	159161787	159161787	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021189.3	+1	validated	p.C84	1.000	49	0%	45	42.2%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CADM3	57863	genome.wustl.edu	37	1	159163227	159163227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021189.3	+1	validated	p.P167S	1.000	148	0%	119	26.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_C2-set_2,superfamily_SSF48726
DARC	2532	genome.wustl.edu	37	1	159175686	159175686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122951.1	+1	reviewed	p.L155M	1.000	48	0%	45	44.4%	8	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
CCDC19	25790	genome.wustl.edu	37	1	159856360	159856360	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012337.2	-1	validated	p.R236	1.000	404	0%	235	28.1%	0	-	-	-	-	NULL
CCDC19	25790	genome.wustl.edu	37	1	159858192	159858192	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012337.2	-1	validated	p.E123*	1.000	75	0%	66	31.8%	0	-	-	-	-	NULL
PIGM	93183	genome.wustl.edu	37	1	160000657	160000657	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145167.2	-1	reviewed	p.G291	0.857	93	0%	76	22.4%	16	43.7%	-	-	-	HMMPfam_Mannosyl_trans
ATP1A2	477	genome.wustl.edu	37	1	160090743	160090743	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000702.3	+1	reviewed	p.G20	0.984	138	0%	125	37.6%	109	41.2%	-	-	-	NULL
ATP1A2	477	genome.wustl.edu	37	1	160097563	160097563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000702.3	+1	reviewed	p.G324S	1.000	59	0%	47	23.4%	196	58.1%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
ATP1A2	477	genome.wustl.edu	37	1	160099160	160099160	+	Missense_Mutation	SNP	G	G	T	rs190449395	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000702.3	+1	reviewed	p.E477D	1.000	107	0%	77	36.4%	119	53.7%	benign(0.397)	deleterious(0.01)	deleterious(0.533)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP1A2	477	genome.wustl.edu	37	1	160105025	160105025	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000447527	+1	known	p.S396L	0.053	68	0%	49	32.7%	273	56.4%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
CASQ1	844	genome.wustl.edu	37	1	160162630	160162630	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001231.4	+1	reviewed	p.F100	0.974	97	0%	148	28.4%	1	0%	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
CASQ1	844	genome.wustl.edu	37	1	160165800	160165800	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001231.4	+1	reviewed	p.F249	1.000	101	0%	116	36.2%	0	-	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
COPA	1314	genome.wustl.edu	37	1	160280028	160280028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098398.1	-1	reviewed	p.F366C	1.000	149	0%	146	28.1%	118	51.6%	probably_damaging(0.977)	tolerated(0.17)	deleterious(0.478)	HMMPfam_Coatomer_WDAD
SLAMF6	114836	genome.wustl.edu	37	1	160460962	160460962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052931.4	-1	reviewed	p.A200D	0.053	121	0%	43	18.6%	5	0%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	superfamily_Immunoglobulin
CD84	8832	genome.wustl.edu	37	1	160535429	160535429	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003874.3	-1	validated	p.I51	0.673	136	0%	47	34%	1	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SLAMF1	6504	genome.wustl.edu	37	1	160607143	160607143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003037.2	-1	validated	p.E85K	0.000	147	0%	154	20.8%	4	0%	benign(0.003)	tolerated(0.9)	-	HMMPfam_SLAM
LY9	4063	genome.wustl.edu	37	1	160766004	160766004	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002348.2	+1	validated	p.D9	0.000	148	0%	160	18.8%	3	0%	-	-	-	NULL
LY9	4063	genome.wustl.edu	37	1	160788072	160788072	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002348.2	+1	validated	p.G469	0.000	397	0%	235	25.5%	2	0%	-	-	-	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161018986	161018986	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001025598.1	-1	validated	p.F609V	0.999	119	0%	169	33.7%	16	0%	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161021228	161021228	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001025598.1	-1	validated	p.P432	0.483	59	0%	97	28.9%	27	0%	-	-	-	NULL
NIT1	4817	genome.wustl.edu	37	1	161089057	161089057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005600.1	+1	provisional	p.G78S	1.000	65	0%	135	30.4%	39	38.4%	benign(0.108)	tolerated(0.14)	neutral(0.258)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
NIT1	4817	genome.wustl.edu	37	1	161089356	161089356	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005600.1	+1	provisional	p.E137	0.999	97	0%	130	24.6%	33	54.5%	-	-	-	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
PPOX	5498	genome.wustl.edu	37	1	161136961	161136961	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000309.3	+1	reviewed	p.I53	0.268	147	0%	233	34.3%	12	25%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
NDUFS2	4720	genome.wustl.edu	37	1	161179031	161179031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004550.4	+1	reviewed	p.E148K	0.997	167	0%	169	30.2%	144	42.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF56762
NR1I3	9970	genome.wustl.edu	37	1	161202644	161202644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077482.1	-1	reviewed	p.F167L	1.000	117	0%	107	32.7%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
SDHC	6391	genome.wustl.edu	37	1	161332256	161332256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001035511.1	+1	reviewed	p.H127N	0.000	200	0%	185	6.5%	103	5.8%	benign(0.017)	-	-	NULL
FCRLA	84824	genome.wustl.edu	37	1	161681867	161681867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032738.3	+1	reviewed	p.I232L	0.000	60	0%	33	39.4%	3	0%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
ATF6	22926	genome.wustl.edu	37	1	161833097	161833097	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007348.2	+1	validated	p.R572*	1.000	130	0%	92	32.6%	33	12.1%	-	-	-	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161954724	161954724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015441.1	-1	provisional	p.Q507H	1.000	232	0%	198	33.3%	10	0%	benign(0.028)	tolerated(1)	neutral(0.002)	HMMPfam_OLF,HMMSmart_SM00284
OLFML2B	25903	genome.wustl.edu	37	1	161987262	161987262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015441.1	-1	provisional	p.F158L	1.000	106	0%	152	11.8%	1	0%	benign(0.406)	tolerated(0.5)	neutral(0.141)	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161993062	161993062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015441.1	-1	provisional	p.E53D	1.000	108	0%	177	32.2%	18	0%	possibly_damaging(0.719)	deleterious(0)	deleterious(0.705)	NULL
DDR2	4921	genome.wustl.edu	37	1	162746018	162746018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014796.1	+1	reviewed	p.R714Q	1.000	124	0%	76	26.3%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
HSD17B7	51478	genome.wustl.edu	37	1	162766450	162766450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016371.2	+1	validated	p.F105L	0.245	189	0%	181	24.9%	15	33.3%	benign(0.001)	tolerated(0.42)	neutral(0.014)	superfamily_NAD(P)-binding Rossmann-fold domains
LMX1A	4009	genome.wustl.edu	37	1	165182974	165182974	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177398.3	-1	validated	p.D191	0.997	175	0%	101	37.6%	0	-	-	-	-	superfamily_Homeodomain-like
LMX1A	4009	genome.wustl.edu	37	1	165322354	165322354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177398.3	-1	validated	p.F74L	1.000	54	0%	103	38.8%	0	-	possibly_damaging(0.836)	deleterious(0.02)	deleterious(0.703)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
RXRG	6258	genome.wustl.edu	37	1	165398117	165398117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006917.3	-1	reviewed	p.T46A	1.000	74	0%	37	24.3%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
LRRC52	440699	genome.wustl.edu	37	1	165532888	165532888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005214.3	+1	validated	p.A257T	0.972	56	0%	31	35.5%	0	-	benign(0.013)	tolerated(0.34)	neutral(0.024)	NULL
TMCO1	54499	genome.wustl.edu	37	1	165712480	165712480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019026.3	-1	validated	p.R131Q	0.994	107	0%	93	23.7%	25	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF841
TMCO1	54499	genome.wustl.edu	37	1	165721403	165721403	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019026.3	-1	validated	p.R87*	1.000	82	0%	109	19.3%	16	0%	-	-	-	HMMPfam_DUF841
TADA1	117143	genome.wustl.edu	37	1	166827485	166827485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053053.3	-1	validated	p.Q242H	0.994	52	0%	47	40.4%	17	52.9%	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
MAEL	84944	genome.wustl.edu	37	1	166960690	166960690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032858.1	+1	validated	p.A101T	0.964	122	0%	198	27.8%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_DUF1898
MAEL	84944	genome.wustl.edu	37	1	166990348	166990348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032858.1	+1	validated	p.F356L	0.999	153	0%	146	28.1%	1	0%	benign(0.004)	tolerated(0.45)	neutral(0.012)	NULL
GPA33	10223	genome.wustl.edu	37	1	167038173	167038173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005814.1	-1	reviewed	p.R134H	0.011	130	0%	163	30.7%	0	-	possibly_damaging(0.907)	tolerated(0.55)	neutral(0.367)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
DUSP27	92235	genome.wustl.edu	37	1	167082984	167082984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080426.1	+1	provisional	p.F50V	1.000	115	0%	110	34.5%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167097069	167097069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080426.1	+1	provisional	p.R901C	0.980	97	1%	140	22.1%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
DUSP27	92235	genome.wustl.edu	37	1	167097771	167097771	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080426.1	+1	provisional	p.E1135*	0.999	43	0%	39	43.6%	0	-	-	-	-	NULL
POU2F1	5451	genome.wustl.edu	37	1	167365638	167365638	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002697.2	+1	provisional	p.L345H	1.000	150	0%	111	36.9%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains
ADCY10	55811	genome.wustl.edu	37	1	167793962	167793962	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018417.4	-1	reviewed	p.I1294	0.001	134	0%	170	28.8%	0	-	-	-	-	superfamily_TPR-like
ADCY10	55811	genome.wustl.edu	37	1	167805733	167805733	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018417.4	-1	reviewed	p.V1041	0.000	99	0%	53	18.9%	0	-	-	-	-	NULL
ADCY10	55811	genome.wustl.edu	37	1	167805745	167805745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018417.4	-1	reviewed	p.F1037L	0.993	94	0%	47	42.6%	0	-	benign(0.004)	tolerated(0.25)	neutral(0.037)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167839646	167839646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018417.4	-1	reviewed	p.R489C	1.000	128	0%	51	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DCAF6	55827	genome.wustl.edu	37	1	168035686	168035686	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018442.2	+1	validated	p.R819*	1.000	79	0%	48	31.2%	33	9%	-	-	-	superfamily_WD40_like
NME7	29922	genome.wustl.edu	37	1	169199982	169199982	+	Nonsense_Mutation	SNP	G	G	A	rs138530600	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013330.3	-1	validated	p.R322*	0.999	124	0%	136	32.4%	16	6.2%	-	-	-	HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases
BLZF1	8548	genome.wustl.edu	37	1	169346043	169346043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003666.2	+1	validated	p.K98N	0.897	153	0%	85	25.9%	11	54.5%	probably_damaging(0.989)	tolerated(0.05)	deleterious(0.785)	NULL
C1orf114	57821	genome.wustl.edu	37	1	169388367	169388367	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021179.1	-1	predicted	p.E367*	0.998	339	0%	149	28.9%	0	-	-	-	-	NULL
C1orf114	57821	genome.wustl.edu	37	1	169390975	169390975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021179.1	-1	predicted	p.D232Y	1.000	160	0%	103	36.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
C1orf114	57821	genome.wustl.edu	37	1	169391085	169391085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021179.1	-1	predicted	p.F195S	0.015	163	0%	102	41.2%	0	-	benign(0.025)	tolerated(0.61)	neutral(0.005)	NULL
F5	2153	genome.wustl.edu	37	1	169492538	169492538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000130.4	-1	reviewed	p.K1982T	1.000	177	0%	59	30.5%	1	0%	possibly_damaging(0.616)	deleterious(0.03)	deleterious(0.579)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
F5	2153	genome.wustl.edu	37	1	169500257	169500257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000130.4	-1	reviewed	p.R1659C	0.826	121	0%	41	17.1%	1	0%	probably_damaging(0.989)	tolerated(0.17)	deleterious(0.498)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169505842	169505842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000130.4	-1	reviewed	p.D1625N	1.000	129	0%	46	43.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169511512	169511512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000130.4	-1	reviewed	p.S939L	0.022	108	0%	76	18.4%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
F5	2153	genome.wustl.edu	37	1	169551753	169551753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000130.4	-1	reviewed	p.L56I	0.011	61	0%	29	27.6%	0	-	benign(0.031)	tolerated(0.18)	neutral(0.058)	superfamily_Cupredoxins
SELP	6403	genome.wustl.edu	37	1	169586578	169586578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003005.3	-1	reviewed	p.R57C	1.000	90	0%	53	37.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
KIFAP3	22920	genome.wustl.edu	37	1	170003558	170003558	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014970.2	-1	reviewed	p.R233	1.000	174	0%	108	27.8%	11	81.8%	-	-	-	HMMPfam_KAP,superfamily_ARM repeat
C1orf129	80133	genome.wustl.edu	37	1	170965743	170965743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025063.2	+1	validated	p.S478Y	0.007	181	0%	107	43%	0	-	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	NULL
LOC646804	646804	genome.wustl.edu	37	1	171052933	171052933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_929761.3	+1	model	p.F101V	0.515	88	0%	50	22%	0	-	-	-	-	NULL
FMO2	2327	genome.wustl.edu	37	1	171165823	171165823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001460.2	+1	reviewed	p.F119L	0.333	130	0%	57	28.1%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_FMO-like,superfamily_SSF51905
FMO1	2326	genome.wustl.edu	37	1	171251154	171251154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002021.1	+1	reviewed	p.P289S	1.000	78	0%	44	34.1%	0	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	HMMPfam_FMO-like,superfamily_NAD(P)-binding Rossmann-fold domains
FMO4	2329	genome.wustl.edu	37	1	171301881	171301881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002022.1	+1	reviewed	p.L221I	0.000	300	0%	168	29.8%	2	0%	benign(0)	tolerated(0.95)	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
DNM3	26052	genome.wustl.edu	37	1	172050998	172050998	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015569.3	+1	validated	p.V483	0.997	184	0%	97	28.9%	0	-	-	-	-	HMMPfam_Dynamin_M
DNM3	26052	genome.wustl.edu	37	1	172061986	172061986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015569.3	+1	validated	p.V506F	1.000	175	0%	96	22.9%	2	50%	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMPfam_Dynamin_M
C1orf9	51430	genome.wustl.edu	37	1	172501619	172501619	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000367723	+1	known	p.G3*	0.005	57	0%	82	26.8%	1	0%	-	-	-	NULL
C1orf9	51430	genome.wustl.edu	37	1	172538254	172538254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014283.3	+1	validated	p.K276N	1.000	85	0%	110	26.4%	13	53.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
C1orf9	51430	genome.wustl.edu	37	1	172559002	172559002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014283.3	+1	validated	p.R921C	1.000	26	0%	19	42.1%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173476104	173476104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178527.3	-1	validated	p.I1039T	0.056	105	0%	65	36.9%	0	-	possibly_damaging(0.767)	tolerated(0.27)	neutral(0.318)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173552668	173552668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178527.3	-1	validated	p.R206K	0.000	118	0%	60	35%	0	-	benign(0.003)	tolerated(0.94)	-	HMMPfam_Na_H_Exchanger
SLC9A11	284525	genome.wustl.edu	37	1	173569289	173569289	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178527.3	-1	validated	p.F65	0.344	81	0%	44	13.6%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
SLC9A11	284525	genome.wustl.edu	37	1	173570897	173570897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178527.3	-1	validated	p.A7T	0.000	194	0%	144	27.8%	0	-	benign(0)	-	-	NULL
ZBTB37	84614	genome.wustl.edu	37	1	173839997	173839997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122770.1	+1	provisional	p.L212I	1.000	98	0%	150	29.3%	4	25%	probably_damaging(0.99)	tolerated(0.05)	deleterious(0.787)	NULL
RC3H1	149041	genome.wustl.edu	37	1	173934064	173934064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172071.2	-1	validated	p.R510Q	0.999	96	0%	60	35%	2	50%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
RABGAP1L	9910	genome.wustl.edu	37	1	174210746	174210746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014857.3	+1	validated	p.G223D	1.000	107	0%	179	30.7%	2	0%	benign(0.019)	tolerated(0.57)	neutral(0.007)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
RABGAP1L	9910	genome.wustl.edu	37	1	174340133	174340133	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014857.3	+1	validated	p.L494	1.000	223	0%	185	36.8%	6	33.3%	-	-	-	NULL
TNR	7143	genome.wustl.edu	37	1	175299271	175299271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003285.2	-1	validated	p.F1244L	1.000	59	0%	37	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
PAPPA2	60676	genome.wustl.edu	37	1	176708769	176708769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020318.2	+1	validated	p.F1269S	1.000	57	0%	19	31.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ASTN1	460	genome.wustl.edu	37	1	176903354	176903354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004319.1	-1	validated	p.S869P	1.000	94	0%	40	20%	6	33.3%	possibly_damaging(0.444)	tolerated(0.17)	neutral(0.204)	HMMSmart_MACPF
ASTN1	460	genome.wustl.edu	37	1	176992636	176992636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004319.1	-1	validated	p.L448I	1.000	30	0%	29	31%	2	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178063631	178063631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000367649	+1	known	p.E2K	1.000	4	0.000	10	0.400	1	100%	benign(0.051)	tolerated(0.06)	neutral(0.326)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178421573	178421573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170692.2	+1	reviewed	p.E581*	1.000	163	0%	92	28.3%	3	0%	-	-	-	HMMPfam_RasGAP,HMMSmart_RasGAP,superfamily_Rho_GAP
C1orf220	400798	genome.wustl.edu	37	1	178514855	178514855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000319387	+1	known	p.L81F	0.004	87	0%	111	28.8%	0	-	unknown(0)	-	-	NULL
RALGPS2	55103	genome.wustl.edu	37	1	178846734	178846734	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152663.3	+1	validated	p.R237*	1.000	131	0%	65	32.3%	1	0%	-	-	-	HMMSmart_SM00147,superfamily_Ras GEF
RALGPS2	55103	genome.wustl.edu	37	1	178855144	178855144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152663.3	+1	validated	p.T361P	1.000	77	0%	45	40%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RALGPS2	55103	genome.wustl.edu	37	1	178861421	178861421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152663.3	+1	validated	p.R435Q	1.000	47	0%	25	36%	1	100%	benign(0.07)	deleterious(0.03)	neutral(0.369)	NULL
ABL2	27	genome.wustl.edu	37	1	179087736	179087736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007314.3	-1	reviewed	p.K403N	1.000	115	0%	102	27.5%	3	0%	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SOAT1	6646	genome.wustl.edu	37	1	179292575	179292575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003101.4	+1	provisional	p.R41Q	0.313	127	0%	60	41.7%	18	38.8%	benign(0.005)	tolerated(0.25)	neutral(0.037)	NULL
SOAT1	6646	genome.wustl.edu	37	1	179307002	179307002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003101.4	+1	provisional	p.K120N	0.984	258	0%	161	30.4%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOAT1	6646	genome.wustl.edu	37	1	179320492	179320492	+	Silent	SNP	G	G	A	rs189625699	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003101.4	+1	provisional	p.P497	0.284	203	0%	133	31.6%	19	47.3%	-	-	-	HMMPfam_MBOAT
AXDND1	126859	genome.wustl.edu	37	1	179352676	179352676	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144696.4	+1	validated	p.T246	0.953	150	0%	73	34.2%	0	-	-	-	-	NULL
TOR1AIP2	163590	genome.wustl.edu	37	1	179816713	179816713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145034.3	-1	validated	p.Q204H	0.011	479	0%	395	30.6%	2	0%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_LAP1C
CEP350	9857	genome.wustl.edu	37	1	179989553	179989553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014810.4	+1	reviewed	p.K882E	1.000	76	0%	53	24.5%	5	40%	benign(0.095)	deleterious(0.04)	neutral(0.356)	NULL
QSOX1	5768	genome.wustl.edu	37	1	180163427	180163427	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002826.4	+1	reviewed	p.F456	0.771	21	0%	39	33.3%	155	46.4%	-	-	-	HMMPfam_Evr1_Alr,superfamily_FAD-dependent thiol oxidase
XPR1	9213	genome.wustl.edu	37	1	180832992	180832992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004736.3	+1	validated	p.E550D	1.000	139	0%	102	26.5%	49	36.7%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_EXS
XPR1	9213	genome.wustl.edu	37	1	180849374	180849374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004736.3	+1	validated	p.K657N	1.000	125	0%	96	26%	81	49.3%	benign(0.018)	tolerated(0.11)	neutral(0.272)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181726111	181726111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000721.2	+1	reviewed	p.R1393H	1.000	250	0.4%	105	38.1%	0	-	benign(0.05)	tolerated(0.17)	neutral(0.062)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181727095	181727095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000721.2	+1	reviewed	p.D1448N	1.000	89	0%	38	31.6%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
RGSL1	353299	genome.wustl.edu	37	1	182458181	182458181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137669.1	+1	validated	p.L521I	0.014	85	0%	50	26%	0	-	-	-	-	NULL
RGSL1	353299	genome.wustl.edu	37	1	182509381	182509381	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137669.1	+1	validated	e15-1	0.873	119	0%	56	42.9%	0	-	-	-	-	-
RNASEL	6041	genome.wustl.edu	37	1	182554923	182554923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021133.2	-1	reviewed	p.S340N	0.318	54	0%	34	38.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHX9	1660	genome.wustl.edu	37	1	182850469	182850469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001357.4	+1	reviewed	p.R899W	0.977	129	0%	83	33.7%	123	86.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HA2
DHX9	1660	genome.wustl.edu	37	1	182852658	182852658	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001357.4	+1	reviewed	p.R1050*	1.000	121	0%	66	40.9%	193	5.1%	-	-	-	HMMPfam_DUF1605
DHX9	1660	genome.wustl.edu	37	1	182856453	182856453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001357.4	+1	reviewed	p.D1233Y	1.000	201	0.5%	179	29.1%	219	65.2%	unknown(0)	deleterious(0.04)	-	NULL
LAMC1	3915	genome.wustl.edu	37	1	183096387	183096387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002293.3	+1	reviewed	p.L991F	0.000	121	0%	93	25.8%	50	28%	benign(0.198)	deleterious(0.04)	neutral(0.368)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
LAMC1	3915	genome.wustl.edu	37	1	183101667	183101667	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002293.3	+1	reviewed	p.N1233	0.993	149	0%	83	26.5%	65	56.9%	-	-	-	NULL
LAMC1	3915	genome.wustl.edu	37	1	183111751	183111751	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002293.3	+1	reviewed	p.S1552	0.327	93	0%	58	24.1%	83	39.7%	-	-	-	NULL
LAMC2	3918	genome.wustl.edu	37	1	183191280	183191280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005562.2	+1	reviewed	p.S233P	1.000	164	0%	145	15.2%	6	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
NCF2	4688	genome.wustl.edu	37	1	183536425	183536425	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000433.3	-1	reviewed	p.E257*	0.992	109	0%	95	33.7%	15	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
APOBEC4	403314	genome.wustl.edu	37	1	183617714	183617714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203454.2	-1	reviewed	p.F68C	1.000	296	0%	205	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APOBEC_N
C1orf21	81563	genome.wustl.edu	37	1	184559933	184559933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030806.3	+1	validated	p.H84Y	1.000	169	0%	114	34.2%	30	33.3%	possibly_damaging(0.666)	tolerated(0.11)	deleterious(0.508)	NULL
EDEM3	80267	genome.wustl.edu	37	1	184663442	184663442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025191.3	-1	validated	p.M852L	0.000	234	0%	89	24.7%	4	75%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
EDEM3	80267	genome.wustl.edu	37	1	184688343	184688343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025191.3	-1	validated	p.H372N	1.000	89	0%	97	30.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
EDEM3	80267	genome.wustl.edu	37	1	184695461	184695461	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025191.3	-1	validated	p.C225	0.999	135	0%	62	22.6%	3	0%	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
FAM129A	116496	genome.wustl.edu	37	1	184868421	184868421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052966.2	-1	validated	p.K26T	1.000	143	0%	50	36%	5	20%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	NULL
TRMT1L	81627	genome.wustl.edu	37	1	185089353	185089353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030934.4	-1	reviewed	p.R667Q	1.000	78	0%	27	29.6%	8	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TRM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SWT1	54823	genome.wustl.edu	37	1	185191052	185191052	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105518.1	+1	validated	p.K731	0.015	171	0%	82	11%	3	0%	-	-	-	NULL
IVNS1ABP	10625	genome.wustl.edu	37	1	185269360	185269360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006469.4	-1	validated	p.R453H	1.000	182	0%	63	39.7%	154	41.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
HMCN1	83872	genome.wustl.edu	37	1	185984479	185984479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031935.2	+1	reviewed	p.R1607*	0.671	73	0%	45	35.6%	2	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185987360	185987360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031935.2	+1	reviewed	p.K1782N	0.960	188	0%	57	31.6%	0	-	benign(0.287)	tolerated(0.19)	neutral(0.138)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	185987376	185987376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031935.2	+1	reviewed	p.R1788C	0.980	184	0%	51	29.4%	1	0%	probably_damaging(0.993)	tolerated(0.05)	deleterious(0.795)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186082064	186082064	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031935.2	+1	reviewed	p.E3704*	1.000	95	0%	71	36.6%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186113763	186113763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031935.2	+1	reviewed	p.P4732S	1.000	134	0%	53	26.4%	7	85.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PRG4	10216	genome.wustl.edu	37	1	186269267	186269267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005807.3	+1	reviewed	p.D41Y	1.000	78	0%	95	33.7%	0	-	unknown(0)	-	-	HMMPfam_Somatomedin_B,HMMSmart_SM00201,superfamily_Somatomedin B domain
PRG4	10216	genome.wustl.edu	37	1	186275471	186275471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005807.3	+1	reviewed	p.R207I	0.000	106	0%	132	27.3%	0	-	unknown(0)	-	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186277029	186277029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005807.3	+1	reviewed	p.K726N	0.001	423	0%	552	25.2%	0	-	unknown(0)	tolerated(0.23)	-	NULL
PRG4	10216	genome.wustl.edu	37	1	186277937	186277937	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005807.3	+1	reviewed	p.K1029I	0.328	283	0%	383	33.2%	0	-	unknown(0)	-	-	NULL
TPR	7175	genome.wustl.edu	37	1	186289548	186289548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003292.2	-1	reviewed	p.S2155L	1.000	121	0%	67	32.8%	112	41.9%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
TPR	7175	genome.wustl.edu	37	1	186308862	186308862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003292.2	-1	reviewed	p.R1355W	1.000	195	0%	72	37.5%	15	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TPR	7175	genome.wustl.edu	37	1	186329918	186329918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003292.2	-1	reviewed	p.L360I	1.000	246	0%	117	14.5%	8	0%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	NULL
PLA2G4A	5321	genome.wustl.edu	37	1	186880450	186880450	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024420.2	+1	reviewed	p.E163*	1.000	140	0%	90	33.3%	10	30%	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4A	5321	genome.wustl.edu	37	1	186934649	186934649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024420.2	+1	reviewed	p.R563K	1.000	157	0%	184	12%	30	26.6%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
RGS1	5996	genome.wustl.edu	37	1	192545950	192545950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002922.3	+1	reviewed	p.L89F	1.000	185	0%	90	33.3%	26	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
TROVE2	6738	genome.wustl.edu	37	1	193045117	193045117	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004600.5	+1	validated	p.E250*	1.000	74	0%	47	17%	2	0%	-	-	-	HMMPfam_TROVE
TROVE2	6738	genome.wustl.edu	37	1	193051325	193051325	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004600.5	+1	validated	p.R405*	1.000	124	0%	45	33.3%	7	28.5%	-	-	-	NULL
CDC73	79577	genome.wustl.edu	37	1	193091432	193091432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024529.4	+1	reviewed	p.K34N	1.000	72	0%	130	23.8%	49	51%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196300308	196300308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198503.2	-1	validated	p.F694C	1.000	102	0%	57	36.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KCNT2	343450	genome.wustl.edu	37	1	196398760	196398760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198503.2	-1	validated	p.K256E	1.000	110	0%	35	17.1%	0	-	benign(0.228)	deleterious(0)	neutral(0.467)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
CFHR3	10878	genome.wustl.edu	37	1	196762638	196762638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021023.5	+1	reviewed	p.E330K	0.358	109	0%	164	28%	1	0%	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	NULL
CFHR1	3078	genome.wustl.edu	37	1	196794753	196794753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002113.2	+1	reviewed	p.R69C	0.002	194	0%	141	31.9%	0	-	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR4	10877	genome.wustl.edu	37	1	196883707	196883707	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006684.2	+1	validated	p.Y174	0.446	176	0%	91	37.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR2	3080	genome.wustl.edu	37	1	196928013	196928013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005666.2	+1	validated	p.P206T	0.000	67	0%	26	23.1%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	superfamily_Complement control module/SCR domain
CFHR5	81494	genome.wustl.edu	37	1	196953220	196953220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030787.3	+1	reviewed	p.S128L	0.000	77	0%	67	35.8%	0	-	benign(0.341)	tolerated(0.05)	neutral(0.453)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR5	81494	genome.wustl.edu	37	1	196964960	196964960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030787.3	+1	reviewed	p.F241L	0.020	194	0%	93	26.9%	0	-	possibly_damaging(0.86)	deleterious(0.01)	deleterious(0.738)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197057435	197057435	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.K3371T	1.000	91	0%	41	31.7%	9	22.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ASPM	259266	genome.wustl.edu	37	1	197065198	197065198	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.E2973*	0.237	197	0%	53	28.3%	2	0%	-	-	-	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197065207	197065207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.A2970T	0.728	205	0%	56	32.1%	0	-	benign(0.103)	tolerated(0.33)	neutral(0.032)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197070045	197070045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.R2779I	0.001	91	0%	42	19%	6	50%	probably_damaging(0.986)	tolerated(0.2)	deleterious(0.483)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197070610	197070610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.K2591Q	0.974	117	0%	61	29.5%	0	-	possibly_damaging(0.752)	tolerated(0.13)	deleterious(0.528)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197071325	197071325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.M2352I	0.000	124	0%	28	42.9%	2	0%	benign(0.004)	tolerated(0.41)	neutral(0.015)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197071392	197071392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.R2330M	0.000	145	0%	50	40%	1	100%	benign(0.149)	deleterious(0.01)	neutral(0.419)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197072338	197072338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.H2015N	0.000	132	0%	68	26.5%	2	50%	benign(0.023)	tolerated(0.31)	neutral(0.028)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197072778	197072778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.R1868I	0.345	135	0%	58	36.2%	4	50%	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197112016	197112016	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018136.4	-1	reviewed	p.E456*	0.003	135	0%	161	34.2%	0	-	-	-	-	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197141302	197141302	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194314.2	-1	validated	p.R688*	1.000	66	0%	39	30.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB41	360023	genome.wustl.edu	37	1	197169075	197169075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194314.2	-1	validated	p.E177K	1.000	97	0%	159	23.9%	2	0%	possibly_damaging(0.722)	deleterious(0)	deleterious(0.707)	HMMSmart_SM00225,HMMPfam_BTB
CRB1	23418	genome.wustl.edu	37	1	197397005	197397005	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201253.1	+1	reviewed	p.G850	1.000	87	0%	41	19.5%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CRB1	23418	genome.wustl.edu	37	1	197404293	197404293	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201253.1	+1	reviewed	p.I1100	1.000	64	0%	31	25.8%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
PTPRC	5788	genome.wustl.edu	37	1	198725100	198725100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002838.3	+1	reviewed	p.K1235N	1.000	93	0%	32	18.8%	70	1.4%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NR5A2	2494	genome.wustl.edu	37	1	200017379	200017379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205860.1	+1	validated	p.Q181H	1.000	90	0%	121	39.7%	49	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nuclear receptor ligand-binding domain
KIF14	9928	genome.wustl.edu	37	1	200534279	200534279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014875.2	-1	validated	p.P1330H	0.004	76	0%	74	14.9%	6	16.6%	possibly_damaging(0.462)	deleterious(0)	deleterious(0.596)	NULL
KIF14	9928	genome.wustl.edu	37	1	200558376	200558376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014875.2	-1	validated	p.R1028Q	0.998	361	0%	151	34.4%	2	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200817192	200817192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203459.1	+1	validated	p.S432Y	1.000	71	0%	25	40%	4	50%	possibly_damaging(0.669)	deleterious(0.01)	deleterious(0.643)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200817378	200817378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203459.1	+1	validated	p.S494Y	0.186	72	0%	56	26.8%	3	33.3%	benign(0.124)	tolerated(0.05)	neutral(0.355)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200818688	200818688	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203459.1	+1	validated	p.R931*	0.013	43	0%	35	22.9%	11	54.5%	-	-	-	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200819353	200819353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203459.1	+1	validated	p.F1152L	1.000	185	0%	113	29.2%	5	40%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200822455	200822455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203459.1	+1	validated	p.E1219*	1.000	119	0%	61	29.5%	3	66.6%	-	-	-	NULL
KIF21B	23046	genome.wustl.edu	37	1	200948758	200948758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017596.2	-1	provisional	p.K1342N	1.000	89	0%	158	32.9%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CACNA1S	779	genome.wustl.edu	37	1	201027559	201027559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000069.2	-1	reviewed	p.D1196Y	1.000	115	0%	107	34.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1S	779	genome.wustl.edu	37	1	201041947	201041947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000069.2	-1	reviewed	p.K721N	1.000	123	0%	137	39.4%	0	-	benign(0.399)	tolerated(0.39)	neutral(0.145)	NULL
CACNA1S	779	genome.wustl.edu	37	1	201042743	201042743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000069.2	-1	reviewed	p.E697D	0.999	197	0%	193	26.9%	0	-	probably_damaging(0.992)	tolerated(0.17)	deleterious(0.506)	NULL
CACNA1S	779	genome.wustl.edu	37	1	201044636	201044636	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000069.2	-1	reviewed	p.F645	0.901	83	0%	91	36.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1S	779	genome.wustl.edu	37	1	201047034	201047034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000069.2	-1	reviewed	p.R531H	1.000	27	0%	27	48.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_SSF81324
IGFN1	91156	genome.wustl.edu	37	1	201169383	201169383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000451870	+1	known	p.K159N	0.633	62	0%	64	42.2%	0	-	benign(0.235)	deleterious(0.01)	neutral(0.429)	NULL
PKP1	5317	genome.wustl.edu	37	1	201263172	201263172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000299.2	+1	reviewed	p.P102L	1.000	98	0%	73	31.5%	0	-	benign(0.156)	deleterious(0.01)	neutral(0.420)	NULL
PKP1	5317	genome.wustl.edu	37	1	201287898	201287898	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000299.2	+1	reviewed	p.F403V	1.000	90	0%	76	36.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TNNT2	7139	genome.wustl.edu	37	1	201330449	201330449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000364.2	-1	reviewed	p.E253D	1.000	129	0%	164	33.5%	5	20%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	NULL
LAD1	3898	genome.wustl.edu	37	1	201355838	201355838	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005558.3	-1	reviewed	p.K217	0.572	101	0%	123	30.9%	20	55%	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201777715	201777715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020443.4	+1	reviewed	p.R1336W	1.000	61	0%	84	27.4%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IPO9	55705	genome.wustl.edu	37	1	201832707	201832707	+	Nonsense_Mutation	SNP	C	C	T	rs12135069		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018085.4	+1	validated	p.R534*	1.000	115	0%	59	35.6%	39	12.8%	-	-	-	superfamily_ARM repeat
RNPEP	6051	genome.wustl.edu	37	1	201965345	201965345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020216.3	+1	validated	p.F270V	1.000	340	0%	304	35.9%	163	47.8%	possibly_damaging(0.527)	deleterious(0.02)	deleterious(0.561)	HMMPfam_Peptidase_M1,superfamily_SSF55486
LGR6	59352	genome.wustl.edu	37	1	202276023	202276023	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017403.1	+1	reviewed	p.E388D	0.993	38	0%	36	36.1%	0	-	possibly_damaging(0.755)	tolerated(0.25)	neutral(0.316)	HMMSmart_SM00369,superfamily_RNI-like
LGR6	59352	genome.wustl.edu	37	1	202278220	202278220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017403.1	+1	reviewed	p.G441E	1.000	82	0%	93	43%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
PPP1R12B	4660	genome.wustl.edu	37	1	202394734	202394734	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032105.2	+1	reviewed	p.Q194	0.999	140	0%	102	27.5%	1	0%	-	-	-	superfamily_Ankyrin repeat
PPP1R12B	4660	genome.wustl.edu	37	1	202396302	202396302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032105.2	+1	reviewed	p.R279Q	0.999	170	0%	92	31.5%	1	100%	possibly_damaging(0.501)	tolerated(0.56)	neutral(0.174)	HMMPfam_Ank,superfamily_Ankyrin repeat
PPP1R12B	4660	genome.wustl.edu	37	1	202399863	202399863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032105.2	+1	reviewed	p.R309Q	1.000	172	0%	159	30.2%	1	0%	possibly_damaging(0.707)	tolerated(0.15)	deleterious(0.496)	NULL
PPFIA4	8497	genome.wustl.edu	37	1	203037706	203037706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015053.1	+1	validated	p.D586N	1.000	101	0%	148	39.2%	10	50%	probably_damaging(0.987)	tolerated(0.17)	deleterious(0.495)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
MYBPH	4608	genome.wustl.edu	37	1	203139454	203139454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004997.2	-1	validated	p.T353N	0.118	167	0%	218	16.1%	0	-	benign(0.017)	deleterious(0.03)	neutral(0.365)	superfamily_FN_III-like
CHIT1	1118	genome.wustl.edu	37	1	203191443	203191443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003465.2	-1	reviewed	p.F206V	1.000	65	0%	44	38.6%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
REN	5972	genome.wustl.edu	37	1	204129790	204129790	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000537.3	-1	reviewed	p.F130	0.995	109	0%	167	31.7%	12	0%	-	-	-	HMMPfam_Asp,superfamily_Acid proteases
PPP1R15B	84919	genome.wustl.edu	37	1	204379444	204379444	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032833.3	-1	validated	p.E366*	0.013	54	0%	86	26.7%	7	14.2%	-	-	-	HMMPfam_CReP_N
NFASC	23114	genome.wustl.edu	37	1	204913366	204913366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000367169	+1	known	p.Q41K	0.007	37	0%	38	23.7%	0	-	-	-	-	NULL
NFASC	23114	genome.wustl.edu	37	1	204919692	204919692	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000367173	+1	known	p.F3Y	1.000	290	0%	276	41.3%	1	0%	-	-	-	NULL
NFASC	23114	genome.wustl.edu	37	1	204937992	204937992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015090.3	+1	reviewed	p.E306D	1.000	72	0%	73	30.1%	3	0%	possibly_damaging(0.457)	deleterious(0.01)	deleterious(0.555)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CNTN2	6900	genome.wustl.edu	37	1	205042351	205042351	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005076.2	+1	reviewed	p.I1000	1.000	33	0%	35	37.1%	2	0%	-	-	-	superfamily_FN_III-like
TMEM81	388730	genome.wustl.edu	37	1	205052943	205052943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203376.1	-1	validated	p.R169K	0.026	122	0%	60	35%	4	25%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMSmart_IG,superfamily_SSF48726
MFSD4	148808	genome.wustl.edu	37	1	205568357	205568357	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181644.4	+1	validated	p.R489	1.000	484	0%	292	33.6%	3	33.3%	-	-	-	superfamily_MFS_gen_substrate_transporter
ELK4	2005	genome.wustl.edu	37	1	205588164	205588164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001973.2	-1	reviewed	p.S373I	1.000	114	0%	87	16.1%	15	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RAB7L1	8934	genome.wustl.edu	37	1	205739534	205739534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135662.1	-1	validated	p.S183Y	0.991	148	0%	187	32.1%	13	15.3%	benign(0.004)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
PM20D1	148811	genome.wustl.edu	37	1	205813249	205813249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152491.4	-1	validated	p.D225Y	0.948	64	0%	82	29.3%	0	-	benign(0.068)	deleterious(0.01)	neutral(0.410)	HMMPfam_Peptidase_M20,superfamily_Zn-dependent exopeptidases
FAM72A	729533	genome.wustl.edu	37	1	206141486	206141486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123168.1	+1	predicted	p.C65G	1.000	623	0%	694	10.5%	6	16.6%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
PIGR	5284	genome.wustl.edu	37	1	207110916	207110916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002644.3	-1	reviewed	p.R190I	0.444	69	0%	67	40.3%	367	53.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CR2	1380	genome.wustl.edu	37	1	207643310	207643310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006658.2	+1	reviewed	p.S363Y	0.005	121	0%	60	36.7%	0	-	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR1	1378	genome.wustl.edu	37	1	207785378	207785378	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000651.4	+1	reviewed	p.C2189	0.563	239	0%	164	36%	2	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1L	1379	genome.wustl.edu	37	1	207850826	207850826	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175710.1	+1	validated	p.E64*	0.046	215	0%	199	27.1%	2	50%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1L	1379	genome.wustl.edu	37	1	207850885	207850885	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175710.1	+1	validated	p.V83	0.226	210	0%	193	29%	1	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
LAMB3	3914	genome.wustl.edu	37	1	209796425	209796425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000228.2	-1	reviewed	p.G820S	0.982	24	0%	44	31.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAMB3	3914	genome.wustl.edu	37	1	209797000	209797000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000228.2	-1	reviewed	p.S736	0.009	57	0%	59	35.6%	2	50%	-	-	-	NULL
LAMB3	3914	genome.wustl.edu	37	1	209811991	209811991	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000228.2	-1	reviewed	p.W62*	1.000	51	0%	44	25%	2	0%	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
SERTAD4	56256	genome.wustl.edu	37	1	210415460	210415460	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019605.3	+1	validated	p.D283	0.002	103	0%	130	30.8%	1	0%	-	-	-	NULL
NEK2	4751	genome.wustl.edu	37	1	211847036	211847036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002497.2	-1	validated	p.R115Q	1.000	44	0%	69	30.4%	46	43.4%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NEK2	4751	genome.wustl.edu	37	1	211847640	211847640	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002497.2	-1	validated	p.E104D	0.997	157	0%	245	14.7%	40	15%	benign(0)	tolerated(0.71)	neutral(0.002)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
INTS7	25896	genome.wustl.edu	37	1	212193518	212193518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015434.2	-1	provisional	p.R106I	1.000	169	0%	231	29.4%	4	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_ARM repeat
PPP2R5A	5525	genome.wustl.edu	37	1	212502672	212502672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006243.2	+1	reviewed	p.M126T	1.000	178	0%	172	39.5%	19	31.5%	benign(0.208)	deleterious(0.02)	neutral(0.403)	HMMPfam_B56,superfamily_ARM repeat
BATF3	55509	genome.wustl.edu	37	1	212860285	212860285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018664.2	-1	reviewed	p.R78W	1.000	139	0%	114	24.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BRLZ,HMMPfam_bZIP_1
RPS6KC1	26750	genome.wustl.edu	37	1	213414983	213414983	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012424.3	+1	validated	p.E722*	0.770	71	0%	28	28.6%	6	33.3%	-	-	-	NULL
PROX1	5629	genome.wustl.edu	37	1	214170575	214170575	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002763.3	+1	provisional	p.R233*	1.000	28	0%	54	27.8%	0	-	-	-	-	HMMPfam_Prox1
PROX1	5629	genome.wustl.edu	37	1	214171593	214171593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002763.3	+1	provisional	p.S572L	1.000	52	0%	74	51.4%	0	-	possibly_damaging(0.89)	deleterious(0.04)	deleterious(0.699)	HMMPfam_Prox1
SMYD2	56950	genome.wustl.edu	37	1	214500974	214500974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020197.2	+1	validated	p.L204F	1.000	130	0%	102	10.8%	66	24.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SET,superfamily_SSF82199
CENPF	1063	genome.wustl.edu	37	1	214788267	214788267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016343.3	+1	reviewed	p.K85N	1.000	118	0%	106	32.1%	4	75%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214815334	214815334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016343.3	+1	reviewed	p.R1218I	0.014	23	0%	20	30%	12	33.3%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
KCNK2	3776	genome.wustl.edu	37	1	215259908	215259908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017425.2	+1	reviewed	p.A82S	1.000	104	0%	124	37.9%	0	-	benign(0.027)	tolerated(0.13)	neutral(0.254)	superfamily_Voltage-gated potassium channels
USH2A	7399	genome.wustl.edu	37	1	215844436	215844436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.E4671K	1.000	234	0%	66	25.8%	1	0%	possibly_damaging(0.932)	tolerated(0.57)	neutral(0.385)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215847677	215847677	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.R4526*	0.020	111	0%	50	30%	2	0%	-	-	-	superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215848679	215848679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.R4192C	1.000	150	0%	57	40.4%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216221913	216221913	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.E2042	1.000	167	0%	108	9.3%	3	100%	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216270537	216270537	+	Missense_Mutation	SNP	C	C	T	rs190170807	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.R1549Q	1.000	85	0%	48	22.9%	4	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMSmart_SM00282,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
USH2A	7399	genome.wustl.edu	37	1	216371855	216371855	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.R1295*	0.008	156	0%	66	25.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases
USH2A	7399	genome.wustl.edu	37	1	216498785	216498785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.L335F	1.000	77	0%	42	21.4%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Laminin_N,HMMSmart_SM00136
USH2A	7399	genome.wustl.edu	37	1	216595445	216595445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206933.2	-1	reviewed	p.F78L	0.153	142	0%	88	27.3%	0	-	benign(0)	tolerated(0.9)	-	NULL
SPATA17	128153	genome.wustl.edu	37	1	217822288	217822288	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138796.2	+1	provisional	p.G45*	1.000	176	0%	123	25.2%	0	-	-	-	-	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
RRP15	51018	genome.wustl.edu	37	1	218478455	218478455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016052.3	+1	reviewed	p.R164I	1.000	178	0%	107	32.7%	29	58.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Rrp15p
EPRS	2058	genome.wustl.edu	37	1	220156132	220156132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004446.2	-1	reviewed	p.R1119C	1.000	120	0%	51	15.7%	119	43.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
RAB3GAP2	25782	genome.wustl.edu	37	1	220331161	220331161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012414.3	-1	reviewed	p.L1107F	1.000	147	0%	55	21.8%	15	66.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MARC2	54996	genome.wustl.edu	37	1	220936264	220936264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017898.3	+1	provisional	p.D208Y	0.931	187	0.5%	168	24.4%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PK beta-barrel domain-like
DUSP10	11221	genome.wustl.edu	37	1	221875829	221875829	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007207.3	-1	reviewed	p.F458	0.996	169	0%	173	30.1%	13	38.4%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
MIA3	375056	genome.wustl.edu	37	1	222798158	222798158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198551.2	+1	validated	p.H106N	1.000	182	0%	206	32%	7	14.2%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_SH3-domain
MIA3	375056	genome.wustl.edu	37	1	222801961	222801961	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198551.2	+1	validated	p.K467Q	0.005	48	0%	53	49.1%	15	40%	benign(0.009)	deleterious(0.01)	neutral(0.406)	NULL
MIA3	375056	genome.wustl.edu	37	1	222818993	222818993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198551.2	+1	validated	p.S1192L	0.579	459	0%	409	36.9%	40	52.5%	possibly_damaging(0.737)	tolerated(0.12)	deleterious(0.530)	NULL
MIA3	375056	genome.wustl.edu	37	1	222835662	222835662	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000450260	+1	known	p.R35*	0.497	79	0%	45	13.3%	83	9.6%	-	-	-	NULL
BROX	148362	genome.wustl.edu	37	1	222904777	222904777	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144695.2	+1	validated	p.F356	0.869	135	0%	102	29.4%	22	45.4%	-	-	-	HMMPfam_BRO1
DISP1	84976	genome.wustl.edu	37	1	223116209	223116209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032890.2	+1	reviewed	p.N15S	1.000	95	0%	103	23.3%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DISP1	84976	genome.wustl.edu	37	1	223177976	223177976	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032890.2	+1	reviewed	p.V1079	1.000	91	0%	62	32.3%	5	40%	-	-	-	HMMPfam_Patched,superfamily_SSF82866
TLR5	7100	genome.wustl.edu	37	1	223284994	223284994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003268.5	-1	reviewed	p.F460L	0.932	101	0%	135	30.4%	5	40%	benign(0)	tolerated(1)	-	superfamily_SSF52058
TP53BP2	7159	genome.wustl.edu	37	1	223971876	223971876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031685.2	-1	reviewed	p.E1102K	1.000	141	0%	98	26.5%	17	23.5%	benign(0.028)	deleterious(0.05)	neutral(0.347)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_ANK
TP53BP2	7159	genome.wustl.edu	37	1	223991077	223991077	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031685.2	-1	reviewed	p.E243*	1.000	143	0%	50	30%	9	22.2%	-	-	-	NULL
NVL	4931	genome.wustl.edu	37	1	224463086	224463086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002533.2	-1	validated	p.F679L	1.000	113	0%	105	23.8%	21	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNIH4	29097	genome.wustl.edu	37	1	224544683	224544683	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014184.2	+1	provisional	p.L19	0.986	156	0%	317	33.4%	120	37.5%	-	-	-	HMMPfam_Cornichon
DNAH14	127602	genome.wustl.edu	37	1	225195125	225195125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001373.1	+1	validated	p.S329F	0.914	98	0%	34	20.6%	0	-	benign(0.045)	tolerated(0.1)	neutral(0.289)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225306929	225306929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001373.1	+1	validated	p.R1367C	0.994	48	0%	17	47.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH14	127602	genome.wustl.edu	37	1	225525838	225525838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001373.1	+1	validated	p.F3370L	0.993	169	0%	122	19.7%	0	-	benign(0.025)	tolerated(1)	neutral(0.001)	NULL
DNAH14	127602	genome.wustl.edu	37	1	225555648	225555648	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001373.1	+1	validated	p.F3985I	0.998	140	0%	94	26.6%	0	-	benign(0.026)	deleterious(0.04)	neutral(0.350)	HMMPfam_Dynein_heavy
C1orf55	163859	genome.wustl.edu	37	1	226173020	226173020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152608.3	-1	validated	p.K447E	0.998	129	0%	101	37.6%	6	33.3%	possibly_damaging(0.862)	deleterious(0)	deleterious(0.778)	NULL
LIN9	286826	genome.wustl.edu	37	1	226465561	226465561	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173083.2	-1	provisional	p.Q215	1.000	256	0%	261	35.2%	4	50%	-	-	-	HMMPfam_DIRP
ITPKB	3707	genome.wustl.edu	37	1	226825442	226825442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002221.3	-1	reviewed	p.R855W	1.000	118	0%	149	34.2%	18	44.4%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_IPK,superfamily_SAICAR synthase-like
PSEN2	5664	genome.wustl.edu	37	1	227069694	227069694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000447.2	+1	reviewed	p.R29H	0.959	24	0%	30	33.3%	20	35%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
ADCK3	56997	genome.wustl.edu	37	1	227152729	227152729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020247.4	+1	reviewed	p.A69D	0.000	54	0%	90	18.9%	9	11.1%	benign(0.039)	tolerated(0.4)	neutral(0.018)	NULL
ADCK3	56997	genome.wustl.edu	37	1	227171313	227171313	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020247.4	+1	reviewed	p.M381L	1.000	33	0%	81	42%	22	50%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)
CDC42BPA	8476	genome.wustl.edu	37	1	227216516	227216516	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003607.3	-1	reviewed	p.S1390*	0.840	113	0%	73	31.5%	1	0%	-	-	-	HMMPfam_CNH,HMMSmart_CNH
CDC42BPA	8476	genome.wustl.edu	37	1	227221038	227221038	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000442054	-1	known	p.*479Q	1.000	96	0%	119	21.8%	4	50%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CDC42BPA	8476	genome.wustl.edu	37	1	227268605	227268605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003607.3	-1	reviewed	p.E823D	1.000	330	0%	180	44.4%	2	50%	possibly_damaging(0.754)	tolerated(0.24)	neutral(0.316)	NULL
CDC42BPA	8476	genome.wustl.edu	37	1	227268640	227268640	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003607.3	-1	reviewed	p.E812*	1.000	351	0%	197	17.8%	2	0%	-	-	-	NULL
LOC100130093	100130093	genome.wustl.edu	37	1	227921430	227921430	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_024485.1	+1	validated	NULL	0.001	30	0%	52	26.9%	1	100%	-	-	-	-
LOC100130093	100130093	genome.wustl.edu	37	1	227921893	227921893	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_024485.1	+1	validated	NULL	0.012	8	0.000	14	0.429	1	0%	-	-	-	-
OBSCN	84033	genome.wustl.edu	37	1	228473987	228473987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098623.1	+1	reviewed	p.K3071N	1.000	32	0%	31	48.4%	0	-	probably_damaging(0.997)	tolerated(0.48)	deleterious(0.477)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228481172	228481172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098623.1	+1	reviewed	p.E3662D	0.002	117	0%	134	26.9%	3	33.3%	unknown(0)	tolerated(0.56)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228509683	228509683	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098623.1	+1	reviewed	p.D5047	1.000	25	0%	69	39.1%	1	100%	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228527680	228527680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098623.1	+1	reviewed	p.D5765N	1.000	68	0%	144	25.7%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
OBSCN	84033	genome.wustl.edu	37	1	228538592	228538592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098623.1	+1	reviewed	p.E6123*	1.000	28	0%	75	20%	5	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
RAB4A	5867	genome.wustl.edu	37	1	229433322	229433322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004578.2	+1	provisional	p.K128N	1.000	96	0%	70	25.7%	97	37.1%	probably_damaging(0.982)	tolerated(0.34)	neutral(0.450)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
NUP133	55746	genome.wustl.edu	37	1	229631308	229631308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018230.2	-1	reviewed	p.S327F	1.000	246	0%	172	37.2%	15	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nup133_N
ABCB10	23456	genome.wustl.edu	37	1	229661841	229661841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012089.2	-1	reviewed	p.S583Y	1.000	65	0%	73	21.9%	14	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ABCB10	23456	genome.wustl.edu	37	1	229676362	229676362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012089.2	-1	reviewed	p.F398L	1.000	172	0%	146	37.7%	10	60%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
URB2	9816	genome.wustl.edu	37	1	229772856	229772856	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014777.2	+1	provisional	p.G832	0.000	129	0%	123	13.8%	8	0%	-	-	-	NULL
GALNT2	2590	genome.wustl.edu	37	1	230338891	230338891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004481.3	+1	reviewed	p.R77W	0.997	73	0%	62	30.6%	36	27.7%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
COG2	22796	genome.wustl.edu	37	1	230822824	230822824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007357.2	+1	reviewed	p.I508M	0.704	54	0%	39	38.5%	26	46.1%	benign(0.047)	tolerated(0.25)	neutral(0.040)	NULL
AGT	183	genome.wustl.edu	37	1	230846067	230846067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000029.3	-1	reviewed	p.A177V	0.880	37	0%	31	45.2%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
TTC13	79573	genome.wustl.edu	37	1	231042706	231042706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024525.4	-1	validated	p.S843L	0.998	135	0%	112	37.5%	12	33.3%	benign(0.309)	deleterious(0.02)	deleterious(0.480)	NULL
ARV1	64801	genome.wustl.edu	37	1	231131730	231131730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022786.1	+1	provisional	p.V225L	1.000	88	0%	46	37%	22	0%	possibly_damaging(0.797)	deleterious(0)	deleterious(0.744)	HMMPfam_Arv1
LOC644006	644006	genome.wustl.edu	37	1	231157378	231157378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_929433.4	+1	model	p.G8C	0.003	141	0%	106	26.4%	0	-	-	-	-	NULL
LOC644006	644006	genome.wustl.edu	37	1	231157860	231157860	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_929433.4	+1	model	p.K168	0.646	99	0%	63	31.7%	0	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
GNPAT	8443	genome.wustl.edu	37	1	231401482	231401482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014236.3	+1	reviewed	p.F241V	1.000	138	0%	61	34.4%	29	48.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
C1orf124	83932	genome.wustl.edu	37	1	231487247	231487247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032018.4	+1	validated	p.E216D	1.000	128	0%	87	24.1%	14	42.8%	benign(0.38)	tolerated(0.17)	neutral(0.180)	NULL
C1orf124	83932	genome.wustl.edu	37	1	231488746	231488746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032018.4	+1	validated	p.R370I	0.013	93	0%	98	21.4%	9	33.3%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
C1orf124	83932	genome.wustl.edu	37	1	231488759	231488759	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032018.4	+1	validated	p.S374	0.000	80	0%	92	33.7%	9	55.5%	-	-	-	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232941931	232941931	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019090.2	+1	validated	p.L388	0.001	164	0%	297	13.8%	1	0%	-	-	-	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232942970	232942970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019090.2	+1	validated	p.T734N	0.001	81	0%	114	33.3%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
NTPCR	84284	genome.wustl.edu	37	1	233091386	233091386	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032324.1	+1	provisional	p.E40*	1.000	167	0%	206	31.6%	8	12.5%	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC35F3	148641	genome.wustl.edu	37	1	234041362	234041362	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173508.2	+1	provisional	p.D47	1.000	16	0%	45	35.6%	0	-	-	-	-	NULL
TARBP1	6894	genome.wustl.edu	37	1	234536999	234536999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005646.3	-1	reviewed	p.K1333N	1.000	143	0%	175	29.1%	32	59.3%	benign(0.055)	tolerated(0.46)	neutral(0.015)	NULL
TARBP1	6894	genome.wustl.edu	37	1	234546220	234546220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005646.3	-1	reviewed	p.D1255Y	1.000	84	0%	78	26.9%	2	0%	possibly_damaging(0.952)	tolerated(0.84)	neutral(0.396)	superfamily_ARM-type_fold
GGPS1	9453	genome.wustl.edu	37	1	235498608	235498608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037277.1	+1	reviewed	p.R10I	1.000	118	0%	148	31.1%	9	22.2%	possibly_damaging(0.478)	deleterious(0.01)	deleterious(0.564)	superfamily_Terpenoid_synth
B3GALNT2	148789	genome.wustl.edu	37	1	235629002	235629002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152490.2	-1	validated	p.F264L	1.000	114	0%	72	34.7%	9	22.2%	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
LYST	1130	genome.wustl.edu	37	1	235880032	235880032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000081.2	-1	reviewed	p.R3203C	1.000	144	0%	68	29.4%	3	33.3%	probably_damaging(1)	-	-	HMMPfam_Beach,superfamily_BEACH domain
LYST	1130	genome.wustl.edu	37	1	235916528	235916528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000081.2	-1	reviewed	p.S2426P	1.000	57	0%	39	23.1%	2	50%	probably_damaging(0.984)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235918905	235918905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000081.2	-1	reviewed	p.D2368Y	1.000	110	0%	60	31.7%	1	100%	probably_damaging(0.992)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235969265	235969265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000081.2	-1	reviewed	p.K1057N	0.018	136	0%	70	34.3%	1	0%	benign(0.002)	tolerated(0.34)	neutral(0.023)	NULL
LYST	1130	genome.wustl.edu	37	1	235969998	235969998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000081.2	-1	reviewed	p.R813Q	1.000	120	0%	65	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LYST	1130	genome.wustl.edu	37	1	235972773	235972773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000081.2	-1	reviewed	p.V449I	1.000	78	0%	28	25%	0	-	probably_damaging(0.996)	tolerated(0.34)	deleterious(0.485)	NULL
LGALS8	3964	genome.wustl.edu	37	1	236711336	236711336	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006499.3	+1	reviewed	p.E319*	0.941	135	0%	102	30.4%	19	21%	-	-	-	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
HEATR1	55127	genome.wustl.edu	37	1	236766583	236766583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018072.4	-1	validated	p.R79Q	1.000	190	0%	150	37.3%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACTN2	88	genome.wustl.edu	37	1	236906324	236906324	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103.2	+1	reviewed	p.T412	0.000	117	0%	166	35.5%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MTR	4548	genome.wustl.edu	37	1	237024542	237024542	+	Missense_Mutation	SNP	G	G	T	rs190455607	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000254.2	+1	reviewed	p.D721Y	1.000	238	0%	118	28%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_B12-binding_2,superfamily_Methionine synthase domain
RYR2	6262	genome.wustl.edu	37	1	237540624	237540624	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001035.2	+1	reviewed	p.G155	0.521	110	0%	60	38.3%	0	-	-	-	-	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
RYR2	6262	genome.wustl.edu	37	1	237620023	237620023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001035.2	+1	reviewed	p.Y534H	1.000	135	0%	77	27.3%	0	-	possibly_damaging(0.928)	-	-	HMMPfam_RYDR_ITPR
RYR2	6262	genome.wustl.edu	37	1	237863556	237863556	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001035.2	+1	reviewed	p.S3052	0.061	68	0%	41	17.1%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237875111	237875111	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001035.2	+1	reviewed	p.T3433P	0.002	117	0%	65	26.2%	0	-	benign(0.001)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237880518	237880518	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001035.2	+1	reviewed	p.E3448	0.996	115	0%	98	26.5%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237982395	237982395	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001035.2	+1	reviewed	p.I4831	0.654	253	0%	171	15.2%	0	-	-	-	-	HMMPfam_Ion_trans
CHRM3	1131	genome.wustl.edu	37	1	240070898	240070898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000740.2	+1	reviewed	p.F49L	1.000	85	0%	30	56.7%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	superfamily_SSF81321
RGS7	6000	genome.wustl.edu	37	1	240978044	240978044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002924.4	-1	validated	p.R273W	1.000	203	0%	147	35.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_G-gamma,HMMSmart_GGL,superfamily_G-protein_gamma-like
CHML	1122	genome.wustl.edu	37	1	241798572	241798572	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001821.3	-1	reviewed	p.S166*	0.001	212	0%	313	29.4%	15	40%	-	-	-	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
WDR64	128025	genome.wustl.edu	37	1	241920634	241920634	+	Missense_Mutation	SNP	T	T	G	rs74150406	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144625.4	+1	validated	p.V317G	0.000	184	0%	55	36.4%	0	-	possibly_damaging(0.647)	tolerated(0.12)	deleterious(0.488)	superfamily_WD40 repeat-like
EXO1	9156	genome.wustl.edu	37	1	242020654	242020654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006027.4	+1	reviewed	p.R138Q	1.000	92	0%	152	35.5%	23	30.4%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_XPG_I,HMMSmart_SM00484,superfamily_PIN domain-like
PLD5	200150	genome.wustl.edu	37	1	242271077	242271077	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152666.1	-1	provisional	p.R287*	1.000	89	0%	40	25%	0	-	-	-	-	HMMPfam_PLD_envelope,superfamily_SSF56024
CEP170	9859	genome.wustl.edu	37	1	243291574	243291574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014812.2	-1	reviewed	p.K1481R	1.000	119	0%	56	21.4%	14	21.4%	probably_damaging(0.98)	tolerated(0.74)	neutral(0.425)	NULL
CEP170	9859	genome.wustl.edu	37	1	243328246	243328246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014812.2	-1	reviewed	p.R1006C	1.000	246	0%	123	19.5%	8	37.5%	benign(0.408)	tolerated(0.05)	deleterious(0.477)	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243437887	243437887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006642.2	+1	validated	p.D117N	0.517	95	0%	91	23.1%	10	20%	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
ADSS	159	genome.wustl.edu	37	1	244572911	244572911	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001126.2	-1	reviewed	p.E450*	1.000	79	0%	65	26.2%	40	40%	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPPDE1	51029	genome.wustl.edu	37	1	244855248	244855248	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016076.3	+1	validated	p.G93*	1.000	129	0%	57	33.3%	12	41.6%	-	-	-	HMMPfam_DUF862
HNRNPU-AS1	284702	genome.wustl.edu	37	1	245005756	245005756	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026778.1	-1	predicted	NULL	0.000	27	0%	28	25%	9	66.6%	-	-	-	-
KIF26B	55083	genome.wustl.edu	37	1	245849515	245849515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018012.3	+1	provisional	p.S1077L	1.000	11	0%	27	37%	4	75%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247013967	247013967	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015446.4	-1	validated	p.E1781*	0.189	101	0%	68	19.1%	18	22.2%	-	-	-	NULL
ZNF695	57116	genome.wustl.edu	37	1	247151184	247151184	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020394.3	-1	validated	p.P211	0.003	82	0%	114	13.2%	2	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF670	93474	genome.wustl.edu	37	1	247201686	247201686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033213.2	-1	validated	p.Q79K	0.980	41	0%	41	31.7%	1	0%	possibly_damaging(0.659)	tolerated(0.11)	deleterious(0.504)	NULL
ZNF496	84838	genome.wustl.edu	37	1	247464520	247464520	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032752.1	-1	provisional	p.I355	0.262	48	0%	52	25%	24	45.8%	-	-	-	NULL
NLRP3	114548	genome.wustl.edu	37	1	247582254	247582254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079821.2	+1	reviewed	p.D53G	0.870	43	0%	37	10.8%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
NLRP3	114548	genome.wustl.edu	37	1	247588414	247588414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079821.2	+1	reviewed	p.D557Y	0.077	105	0%	62	21%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLRP3	114548	genome.wustl.edu	37	1	247588595	247588595	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079821.2	+1	reviewed	p.K617T	0.982	73	0%	36	22.2%	1	0%	possibly_damaging(0.455)	deleterious(0.03)	deleterious(0.513)	NULL
NLRP3	114548	genome.wustl.edu	37	1	247599413	247599413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079821.2	+1	reviewed	p.K880N	0.006	116	0%	112	32.1%	0	-	possibly_damaging(0.927)	deleterious(0.01)	deleterious(0.780)	superfamily_SSF52047
OR2W5	441932	genome.wustl.edu	37	1	247654499	247654499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004698.2	+1	validated	p.E24K	0.096	217	0%	220	31.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2C3	81472	genome.wustl.edu	37	1	247695427	247695427	+	Silent	SNP	C	C	T	rs34220133	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198074.4	-1	validated	p.R129	0.998	93	0%	168	25.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2C3	81472	genome.wustl.edu	37	1	247695697	247695697	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198074.4	-1	validated	p.S39	0.000	128	0%	246	36.6%	0	-	-	-	-	superfamily_SSF81321
OR2C3	81472	genome.wustl.edu	37	1	247695788	247695788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198074.4	-1	validated	p.S9Y	0.000	48	0%	90	41.1%	0	-	benign(0.079)	tolerated(1)	neutral(0.005)	superfamily_SSF81321
C1orf150	148823	genome.wustl.edu	37	1	247737634	247737634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145278.3	+1	provisional	p.P120S	0.003	124	0%	60	21.7%	0	-	probably_damaging(0.958)	tolerated(0.25)	neutral(0.439)	NULL
OR14A16	284532	genome.wustl.edu	37	1	247978842	247978842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001966.1	-1	provisional	p.L64I	0.026	119	0%	83	31.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR14A16	284532	genome.wustl.edu	37	1	247978950	247978950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001966.1	-1	provisional	p.L28I	0.000	96	0%	58	29.3%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	superfamily_SSF81321
OR14A16	284532	genome.wustl.edu	37	1	247978955	247978955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001966.1	-1	provisional	p.S26L	0.000	93	0%	56	35.7%	0	-	benign(0.125)	deleterious(0)	neutral(0.455)	superfamily_SSF81321
TRIM58	25893	genome.wustl.edu	37	1	248028107	248028107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015431.3	+1	validated	p.A206V	1.000	39	0%	53	39.6%	0	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	NULL
OR2T8	343172	genome.wustl.edu	37	1	248084899	248084899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005522.1	+1	validated	p.E194K	0.003	224	0%	152	21.7%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_7tm_1,superfamily_SSF81321
OR2AK2	391191	genome.wustl.edu	37	1	248128727	248128727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004491.1	+1	provisional	p.L32I	0.001	165	0%	95	26.3%	0	-	benign(0.223)	tolerated(0.35)	neutral(0.042)	superfamily_SSF81321
OR2AK2	391191	genome.wustl.edu	37	1	248128839	248128839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004491.1	+1	provisional	p.R69I	0.001	208	0%	148	38.5%	0	-	benign(0.058)	deleterious(0.02)	neutral(0.387)	HMMPfam_7tm_1,superfamily_SSF81321
OR2AK2	391191	genome.wustl.edu	37	1	248129190	248129190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004491.1	+1	provisional	p.S186Y	0.005	99	0%	75	30.7%	0	-	benign(0.021)	deleterious(0.01)	neutral(0.407)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L5	81466	genome.wustl.edu	37	1	248185343	248185343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000355281	+1	known	p.L32I	0.004	186	0.5%	99	32.3%	0	-	benign(0.013)	tolerated(0.38)	neutral(0.018)	superfamily_SSF81321
OR2L3	391192	genome.wustl.edu	37	1	248224026	248224026	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004687.1	+1	provisional	p.G15*	0.035	273	0%	199	29.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2M5	127059	genome.wustl.edu	37	1	248308947	248308947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004690.1	+1	provisional	p.F166L	0.027	320	0%	255	31.4%	0	-	possibly_damaging(0.571)	tolerated(0.37)	neutral(0.214)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248343380	248343380	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004688.1	+1	provisional	p.V31	0.008	399	0%	323	25.1%	0	-	-	-	-	superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248343728	248343728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004688.1	+1	provisional	p.F147L	0.000	246	0%	178	25.8%	0	-	benign(0.053)	tolerated(0.07)	neutral(0.323)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T33	391195	genome.wustl.edu	37	1	248436537	248436537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004695.1	-1	provisional	p.E194K	0.006	258	0%	134	20.1%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T33	391195	genome.wustl.edu	37	1	248436600	248436600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004695.1	-1	provisional	p.D173N	0.000	124	0%	86	17.4%	0	-	benign(0.013)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T12	127064	genome.wustl.edu	37	1	248458370	248458370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004692.1	-1	provisional	p.E171K	0.002	202	0%	161	9.9%	0	-	possibly_damaging(0.872)	tolerated(0.28)	neutral(0.371)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512981	248512981	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001918.1	+1	provisional	p.I302S	0.000	16	0%	11	36.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248569366	248569366	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030904.1	+1	provisional	p.S24*	0.000	113	0%	51	25.5%	0	-	-	-	-	NULL
OR2T10	127069	genome.wustl.edu	37	1	248756388	248756388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004693.1	-1	provisional	p.M228V	0.074	52	0%	63	41.3%	0	-	possibly_damaging(0.579)	deleterious(0)	deleterious(0.643)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SH3BP5L	80851	genome.wustl.edu	37	1	249108694	249108694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030645.1	-1	provisional	p.R164Q	0.999	60	0%	102	27.5%	47	46.8%	benign(0.152)	tolerated(0.81)	neutral(0.014)	HMMPfam_SH3BP5
TPO	7173	genome.wustl.edu	37	2	1440123	1440123	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000547.5	+1	reviewed	p.K150T	0.036	170	0%	168	32.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Heme-dependent peroxidases
PXDN	7837	genome.wustl.edu	37	2	1647335	1647335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012293.1	-1	validated	p.N1253D	1.000	30	0%	55	40%	3	0%	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PXDN	7837	genome.wustl.edu	37	2	1657529	1657529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012293.1	-1	validated	p.A659P	1.000	96	0%	144	39.6%	6	0%	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
PXDN	7837	genome.wustl.edu	37	2	1684054	1684054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012293.1	-1	validated	p.G214E	0.999	98	0%	186	31.7%	4	0%	probably_damaging(0.994)	tolerated(0.73)	neutral(0.454)	HMMSmart_SM00082,superfamily_L domain-like
MYT1L	23040	genome.wustl.edu	37	2	1890318	1890318	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015025.2	-1	validated	p.E900*	1.000	55	0%	70	35.7%	0	-	-	-	-	HMMPfam_zf-C2HC,superfamily_SSF103637
MYT1L	23040	genome.wustl.edu	37	2	1921092	1921092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015025.2	-1	validated	p.K499N	1.000	206	0%	172	32%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MYT1L	23040	genome.wustl.edu	37	2	1926852	1926852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015025.2	-1	validated	p.S230F	1.000	273	0%	207	30%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
COLEC11	78989	genome.wustl.edu	37	2	3673667	3673667	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199235.1	+1	validated	p.E60*	0.065	72	0%	125	26.4%	0	-	-	-	-	NULL
CMPK2	129607	genome.wustl.edu	37	2	6991612	6991612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207315.2	-1	validated	p.E399*	0.962	131	0%	105	29.5%	11	27.2%	-	-	-	HMMPfam_Thymidylate_kin,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIDINS220	57498	genome.wustl.edu	37	2	8871069	8871069	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020738.2	-1	validated	p.F1699	0.033	235	0%	278	32.4%	26	15.3%	-	-	-	NULL
KIDINS220	57498	genome.wustl.edu	37	2	8926151	8926151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020738.2	-1	validated	p.K650T	1.000	123	0%	88	27.3%	8	25%	possibly_damaging(0.493)	deleterious(0.05)	deleterious(0.510)	HMMPfam_KAP_NTPase
KIDINS220	57498	genome.wustl.edu	37	2	8940583	8940583	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020738.2	-1	validated	p.E283*	1.000	116	0%	86	38.4%	13	23%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ASAP2	8853	genome.wustl.edu	37	2	9484673	9484673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003887.2	+1	reviewed	p.R288C	1.000	172	0%	121	34.7%	19	31.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ASAP2	8853	genome.wustl.edu	37	2	9508556	9508556	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003887.2	+1	reviewed	p.L488	1.000	69	0%	72	36.1%	20	70%	-	-	-	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
CPSF3	51692	genome.wustl.edu	37	2	9580718	9580718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016207.2	+1	provisional	p.N287H	1.000	108	0%	106	26.4%	54	44.4%	benign(0.114)	tolerated(0.15)	neutral(0.250)	NULL
NOL10	79954	genome.wustl.edu	37	2	10811786	10811786	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024894.2	-1	validated	p.E120*	1.000	123	0%	80	27.5%	6	0%	-	-	-	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
NOL10	79954	genome.wustl.edu	37	2	10824709	10824709	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024894.2	-1	validated	p.L32	0.304	140	0%	172	22.1%	6	66.6%	-	-	-	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
ATP6V1C2	245973	genome.wustl.edu	37	2	10915115	10915115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039362.1	+1	reviewed	p.R248H	1.000	242	0%	458	33.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-ATPase_C
KCNF1	3754	genome.wustl.edu	37	2	11052828	11052828	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002236.4	+1	reviewed	p.V92	0.995	48	0%	92	34.8%	0	-	-	-	-	HMMPfam_K_tetra,superfamily_POZ domain
KCNF1	3754	genome.wustl.edu	37	2	11053302	11053302	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002236.4	+1	reviewed	p.F250	0.985	21	0%	32	37.5%	2	50%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ROCK2	9475	genome.wustl.edu	37	2	11376042	11376042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004850.3	-1	reviewed	p.E170A	1.000	97	0%	66	30.3%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LPIN1	23175	genome.wustl.edu	37	2	11919723	11919723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145693.1	+1	reviewed	p.K267N	0.873	100	0%	197	30.5%	2	0%	benign(0.424)	tolerated(0.89)	neutral(0.138)	NULL
LPIN1	23175	genome.wustl.edu	37	2	11945210	11945210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145693.1	+1	reviewed	p.G690D	1.000	101	0%	102	33.3%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LNS2,HMMSmart_LNS2,superfamily_SSF56784
TRIB2	28951	genome.wustl.edu	37	2	12863502	12863502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021643.3	+1	reviewed	p.F129L	1.000	99	0%	141	26.2%	16	25%	possibly_damaging(0.917)	tolerated(0.13)	deleterious(0.621)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NBAS	51594	genome.wustl.edu	37	2	15417095	15417095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015909.2	-1	validated	p.E1757K	0.317	137	0.7%	51	31.4%	18	33.3%	possibly_damaging(0.643)	tolerated(0.5)	neutral(0.236)	NULL
NBAS	51594	genome.wustl.edu	37	2	15448448	15448448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015909.2	-1	validated	p.K1563N	1.000	51	0%	31	29%	27	37%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
DDX1	1653	genome.wustl.edu	37	2	15744594	15744594	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004939.1	+1	reviewed	p.L196	0.993	208	0%	327	29.7%	58	39.6%	-	-	-	HMMPfam_SPRY,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00449,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD51AP2	729475	genome.wustl.edu	37	2	17695282	17695282	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099218.2	-1	provisional	p.G1109*	0.008	83	0%	106	34%	0	-	-	-	-	NULL
RAD51AP2	729475	genome.wustl.edu	37	2	17699010	17699010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099218.2	-1	provisional	p.N225H	0.991	100	0%	140	15.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
VSNL1	7447	genome.wustl.edu	37	2	17773444	17773444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003385.4	+1	reviewed	p.L35I	1.000	110	0%	50	30%	15	46.6%	benign(0.016)	tolerated(0.13)	neutral(0.253)	superfamily_EF-hand
VSNL1	7447	genome.wustl.edu	37	2	17836635	17836635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003385.4	+1	reviewed	p.L184I	1.000	82	0%	66	24.2%	19	36.8%	benign(0.363)	tolerated(0.25)	neutral(0.152)	superfamily_EF-hand
SMC6	79677	genome.wustl.edu	37	2	17896306	17896306	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142286.1	-1	validated	p.E518*	1.000	83	0%	40	22.5%	12	8.3%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
GEN1	348654	genome.wustl.edu	37	2	17962005	17962005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130009.1	+1	validated	p.S509L	0.000	119	0%	64	40.6%	9	33.3%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
MSGN1	343930	genome.wustl.edu	37	2	17998239	17998239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105569.1	+1	provisional	p.P152S	1.000	37	0%	56	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
WDR35	57539	genome.wustl.edu	37	2	20160353	20160353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006657.1	-1	reviewed	p.S417Y	1.000	97	0%	103	29.1%	6	33.3%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_WD40 repeat-like
MATN3	4148	genome.wustl.edu	37	2	20192873	20192873	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002381.4	-1	reviewed	p.*487	0.929	121	0%	239	28.9%	1	100%	-	-	-	NULL
MATN3	4148	genome.wustl.edu	37	2	20194155	20194155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002381.4	-1	reviewed	p.R437Q	0.306	102	1%	139	28.1%	4	0%	benign(0.411)	tolerated(0.39)	neutral(0.149)	superfamily_EGF/Laminin
C2orf43	60526	genome.wustl.edu	37	2	20939875	20939875	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021925.2	-1	predicted	p.R187*	1.000	101	0%	60	35%	0	-	-	-	-	HMMPfam_DUF2305,superfamily_SSF53474
C2orf43	60526	genome.wustl.edu	37	2	21001179	21001179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021925.2	-1	predicted	p.F15L	0.073	163	0%	85	38.8%	2	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
APOB	338	genome.wustl.edu	37	2	21225468	21225468	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000384.2	-1	reviewed	p.L4276V	0.118	150	0%	53	28.3%	0	-	benign(0)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21229728	21229728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000384.2	-1	reviewed	p.T3338A	1.000	75	0%	35	20%	0	-	probably_damaging(0.999)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21231843	21231843	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000384.2	-1	reviewed	p.F2633V	0.897	61	0%	27	37%	0	-	benign(0.393)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21237331	21237331	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000384.2	-1	reviewed	p.L1277	0.999	172	0%	93	25.8%	0	-	-	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21250836	21250836	+	Missense_Mutation	SNP	G	G	T	rs147173587	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000384.2	-1	reviewed	p.S644Y	1.000	186	0%	132	12.9%	0	-	probably_damaging(0.999)	-	-	HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
ATAD2B	54454	genome.wustl.edu	37	2	23974917	23974917	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017552.1	-1	validated	p.*1459L	1.000	73	0%	51	37.3%	5	40%	-	-	-	NULL
ATAD2B	54454	genome.wustl.edu	37	2	23977080	23977080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017552.1	-1	validated	p.R1435H	1.000	49	0%	22	36.4%	4	75%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TP53I3	9540	genome.wustl.edu	37	2	24307143	24307143	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004881.2	-1	reviewed	p.K18	0.986	42	0%	83	41%	39	41%	-	-	-	superfamily_GroES-like
PFN4	375189	genome.wustl.edu	37	2	24344109	24344109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199346.1	-1	provisional	p.R60Q	0.997	164	0%	294	32.7%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Profilin,HMMSmart_SM00392,superfamily_Profilin (actin-binding protein)
ITSN2	50618	genome.wustl.edu	37	2	24426503	24426503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006277.2	-1	reviewed	p.L1696I	0.774	100	0%	128	24.2%	8	12.5%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
ITSN2	50618	genome.wustl.edu	37	2	24435522	24435522	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006277.2	-1	reviewed	p.R1362	0.999	47	0%	84	34.5%	15	40%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ITSN2	50618	genome.wustl.edu	37	2	24498657	24498657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006277.2	-1	reviewed	p.R669H	0.950	341	0%	199	26.1%	3	33.3%	benign(0.009)	deleterious(0.03)	neutral(0.365)	NULL
ITSN2	50618	genome.wustl.edu	37	2	24522991	24522991	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006277.2	-1	reviewed	p.E377	0.985	252	0%	169	35.5%	7	85.7%	-	-	-	NULL
NCOA1	8648	genome.wustl.edu	37	2	24920614	24920614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003743.4	+1	reviewed	p.F299C	1.000	168	0%	130	33.8%	15	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PYP-like sensor domain (PAS domain)
NCOA1	8648	genome.wustl.edu	37	2	24930403	24930403	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003743.4	+1	reviewed	p.K688N	1.000	105	0%	64	32.8%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRC-1
EFR3B	22979	genome.wustl.edu	37	2	25315992	25315992	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014971.1	+1	validated	p.R69*	1.000	68	0%	63	31.7%	0	-	-	-	-	superfamily_ARM repeat
EFR3B	22979	genome.wustl.edu	37	2	25377195	25377195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014971.1	+1	validated	p.L814M	1.000	162	0%	195	32.3%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DNMT3A	1788	genome.wustl.edu	37	2	25463181	25463181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022552.3	-1	reviewed	p.R771Q	1.000	42	0%	57	33.3%	35	45.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DTNB	1838	genome.wustl.edu	37	2	25610229	25610229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021907.3	-1	reviewed	p.R585H	1.000	66	0%	103	27.2%	48	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HADHB	3032	genome.wustl.edu	37	2	26501647	26501647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000183.2	+1	reviewed	p.R203Q	1.000	193	0%	145	32.4%	173	45%	possibly_damaging(0.87)	tolerated(0.05)	deleterious(0.683)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
GPR113	165082	genome.wustl.edu	37	2	26538501	26538501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145168.1	-1	validated	p.H271Y	0.109	47	0%	55	30.9%	0	-	benign(0.332)	tolerated(0.12)	neutral(0.364)	NULL
OTOF	9381	genome.wustl.edu	37	2	26703156	26703156	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194248.2	-1	reviewed	p.E609D	1.000	74	0%	101	35.6%	0	-	benign(0.178)	tolerated(0.38)	neutral(0.034)	NULL
C2orf70	339778	genome.wustl.edu	37	2	26785555	26785555	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105519.1	+1	predicted	e1+1	1.000	24	0%	33	30.3%	0	-	-	-	-	-
DPYSL5	56896	genome.wustl.edu	37	2	27151171	27151171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020134.3	+1	validated	p.E217K	1.000	154	0%	117	25.6%	0	-	probably_damaging(0.974)	tolerated(0.08)	deleterious(0.716)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
AGBL5	60509	genome.wustl.edu	37	2	27278702	27278702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021831.5	+1	validated	p.S354Y	0.457	76	0%	122	29.5%	80	41.2%	benign(0.398)	tolerated(0.19)	neutral(0.177)	superfamily_Zn-dependent exopeptidases
AGBL5	60509	genome.wustl.edu	37	2	27282156	27282156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021831.5	+1	validated	p.S658Y	1.000	92	0%	100	29%	45	48.8%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
AGBL5	60509	genome.wustl.edu	37	2	27293055	27293055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021831.5	+1	validated	p.S862I	0.956	251	0%	467	30.4%	13	61.5%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
DNAJC5G	285126	genome.wustl.edu	37	2	27503296	27503296	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173650.1	+1	provisional	e5-1	0.990	12	0%	16	37.5%	0	-	-	-	-	-
EIF2B4	8890	genome.wustl.edu	37	2	27592809	27592809	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172195.3	-1	reviewed	p.L24	0.405	32	0%	82	36.6%	2	0%	-	-	-	NULL
PPM1G	5496	genome.wustl.edu	37	2	27605374	27605374	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177983.1	-1	reviewed	p.E434*	1.000	232	0%	356	28.9%	104	3.8%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
C2orf16	84226	genome.wustl.edu	37	2	27799972	27799972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032266.3	+1	validated	p.S178Y	0.042	76	0%	62	35.5%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27802913	27802913	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032266.3	+1	validated	p.G1158	1.000	62	0%	49	24.5%	0	-	-	-	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27803796	27803796	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032266.3	+1	validated	p.R1453*	0.003	40	0%	50	30%	1	0%	-	-	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27804814	27804814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032266.3	+1	validated	p.S1792I	0.004	157	0%	117	20.5%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
PPP1CB	5500	genome.wustl.edu	37	2	29001819	29001819	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002709.2	+1	reviewed	p.K110T	1.000	229	0%	139	29.5%	67	52.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
TRMT61B	55006	genome.wustl.edu	37	2	29073103	29073103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017910.3	-1	validated	p.L466I	1.000	188	0%	119	33.6%	24	29.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GCD14,superfamily_SSF53335
C2orf71	388939	genome.wustl.edu	37	2	29294673	29294673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029883.1	-1	provisional	p.L819F	0.000	61	0%	63	38.1%	0	-	possibly_damaging(0.693)	tolerated(0.19)	neutral(0.297)	NULL
LCLAT1	253558	genome.wustl.edu	37	2	30785079	30785079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182551.3	+1	validated	p.F182L	1.000	87	0%	67	22.4%	9	33.3%	benign(0.009)	tolerated(1)	neutral(0.001)	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
CAPN13	92291	genome.wustl.edu	37	2	30977201	30977201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144575.2	-1	validated	p.P299L	0.000	110	0%	63	30.2%	0	-	benign(0.025)	deleterious(0.05)	neutral(0.346)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
EHD3	30845	genome.wustl.edu	37	2	31457652	31457652	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014600.2	+1	validated	p.F55	0.997	49	0%	97	39.2%	1	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
XDH	7498	genome.wustl.edu	37	2	31628822	31628822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000379.3	-1	reviewed	p.E17D	1.000	267	0%	141	29.8%	0	-	benign(0.017)	tolerated(0.22)	neutral(0.043)	HMMPfam_Fer2,superfamily_Ferredoxin
SPAST	6683	genome.wustl.edu	37	2	32323892	32323892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014946.3	+1	reviewed	p.S205Y	1.000	89	0%	54	53.7%	3	0%	possibly_damaging(0.691)	deleterious(0.03)	deleterious(0.612)	NULL
SPAST	6683	genome.wustl.edu	37	2	32379559	32379559	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014946.3	+1	reviewed	p.T615	0.664	95	0%	75	33.3%	20	35%	-	-	-	NULL
YIPF4	84272	genome.wustl.edu	37	2	32515602	32515602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032312.3	+1	validated	p.D44Y	1.000	195	0%	286	32.9%	16	31.2%	possibly_damaging(0.677)	tolerated(0.07)	deleterious(0.560)	NULL
YIPF4	84272	genome.wustl.edu	37	2	32530671	32530671	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032312.3	+1	validated	p.F237L	1.000	274	0%	270	32.2%	7	28.5%	unknown(0)	tolerated(0.08)	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32660609	32660609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016252.3	+1	reviewed	p.D1152G	1.000	96	0%	80	27.5%	1	0%	benign(0.099)	tolerated(0.2)	neutral(0.057)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32735613	32735613	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016252.3	+1	reviewed	p.F3420V	1.000	155	0%	78	35.9%	6	50%	benign(0.249)	tolerated(0.18)	neutral(0.082)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32774537	32774537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016252.3	+1	reviewed	p.R4378Q	1.000	141	0%	60	41.7%	39	12.8%	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32832645	32832645	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016252.3	+1	reviewed	p.R4732*	1.000	188	0%	121	38%	48	33.3%	-	-	-	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
LTBP1	4052	genome.wustl.edu	37	2	33498722	33498722	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206943.2	+1	reviewed	e16-1	1.000	86	0%	47	36.2%	0	-	-	-	-	-
LTBP1	4052	genome.wustl.edu	37	2	33526625	33526625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206943.2	+1	reviewed	p.H1133R	0.495	186	0%	84	35.7%	166	37.9%	benign(0.017)	tolerated(0.05)	neutral(0.346)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
RASGRP3	25780	genome.wustl.edu	37	2	33783768	33783768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001139488.1	+1	validated	p.V579F	0.849	91	0%	95	41.1%	2	0%	possibly_damaging(0.608)	tolerated(0.19)	neutral(0.260)	NULL
VIT	5212	genome.wustl.edu	37	2	37032606	37032606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053276.3	+1	validated	p.K396N	1.000	75	0%	71	32.4%	0	-	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
STRN	6801	genome.wustl.edu	37	2	37076884	37076884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003162.2	-1	validated	p.P716S	1.000	123	0%	73	30.1%	11	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STRN	6801	genome.wustl.edu	37	2	37111077	37111077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003162.2	-1	validated	p.E395G	1.000	130	0%	104	22.1%	7	14.2%	possibly_damaging(0.86)	tolerated(0.18)	neutral(0.389)	NULL
STRN	6801	genome.wustl.edu	37	2	37126713	37126713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003162.2	-1	validated	p.D250N	1.000	180	0%	121	30.6%	6	16.6%	benign(0.017)	tolerated(0.34)	neutral(0.024)	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37234403	37234403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019024.1	-1	validated	p.H1523N	1.000	111	0%	62	38.7%	13	38.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
QPCT	25797	genome.wustl.edu	37	2	37596908	37596908	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012413.3	+1	reviewed	p.F268	0.630	168	0%	76	23.7%	1	0%	-	-	-	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
FAM82A1	151393	genome.wustl.edu	37	2	38156621	38156621	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000354545	+1	known	p.I67	0.017	98	0%	221	35.3%	1	100%	-	-	-	NULL
ATL2	64225	genome.wustl.edu	37	2	38545723	38545723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135673.1	-1	validated	p.D186G	1.000	76	0%	64	26.6%	23	39.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
HNRPLL	92906	genome.wustl.edu	37	2	38800455	38800455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138394.3	-1	validated	p.G330E	1.000	111	0%	57	40.4%	49	40.8%	benign(0.075)	tolerated(0.18)	neutral(0.061)	superfamily_RNA-binding domain RBD
ARHGEF33	100271715	genome.wustl.edu	37	2	39156109	39156109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145451.2	+1	validated	p.R46I	1.000	164	0%	84	33.3%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
ARHGEF33	100271715	genome.wustl.edu	37	2	39180311	39180311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145451.2	+1	validated	p.F354L	1.000	359	0%	334	24.6%	1	100%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CDKL4	344387	genome.wustl.edu	37	2	39440541	39440541	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009565.1	-1	provisional	p.N121	0.918	92	0%	66	19.7%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAP4K3	8491	genome.wustl.edu	37	2	39485561	39485561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003618.2	-1	reviewed	p.L800I	1.000	145	0%	135	11.1%	14	14.2%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_CNH,HMMSmart_SM00036
THUMPD2	80745	genome.wustl.edu	37	2	39997087	39997087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025264.4	-1	validated	p.K115N	1.000	265	0%	360	28.3%	4	50%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	NULL
SLC8A1	6546	genome.wustl.edu	37	2	40366764	40366764	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000359719	-1	known	p.R181*	0.924	65	0%	39	30.8%	7	0%	-	-	-	NULL
SLC8A1	6546	genome.wustl.edu	37	2	40655630	40655630	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000359719	-1	known	p.P9S	1.000	86	0%	52	32.7%	0	-	-	-	-	HMMPfam_Calx-beta
SLC8A1	6546	genome.wustl.edu	37	2	40657093	40657093	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021097.2	-1	validated	p.E110*	1.000	151	0%	59	13.6%	0	-	-	-	-	HMMPfam_Na_Ca_ex
PKDCC	91461	genome.wustl.edu	37	2	42281425	42281425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138370.2	+1	validated	p.R338W	1.000	23	0%	54	29.6%	85	42.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
COX7A2L	9167	genome.wustl.edu	37	2	42588288	42588288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004718.2	-1	reviewed	p.F5C	1.000	27	0%	44	18.2%	158	35.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MTA3	57504	genome.wustl.edu	37	2	42935107	42935107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020744.2	+1	provisional	p.I405M	0.894	151	0%	113	34.5%	35	48.5%	benign(0.023)	deleterious(0.03)	neutral(0.365)	HMMPfam_GATA,HMMSmart_ZnF_GATA
HAAO	23498	genome.wustl.edu	37	2	42996959	42996959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012205.2	-1	reviewed	p.R175Q	0.728	51	0%	92	25%	7	0%	probably_damaging(0.953)	tolerated(0.58)	neutral(0.402)	superfamily_RmlC-like cupins
THADA	63892	genome.wustl.edu	37	2	43520309	43520309	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083953.1	-1	validated	p.I1494	0.484	77	0%	111	17.1%	36	44.4%	-	-	-	PatternScan_FORMATE_NITRITE_TP_1
PLEKHH2	130271	genome.wustl.edu	37	2	43921651	43921651	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172069.3	+1	validated	p.E140*	1.000	152	0%	94	18.1%	0	-	-	-	-	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43927015	43927015	+	Silent	SNP	C	C	T	rs187276353	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172069.3	+1	validated	p.L306	0.057	84	0%	87	21.8%	0	-	-	-	-	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43927453	43927453	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172069.3	+1	validated	p.A452	0.007	92	0%	105	30.5%	0	-	-	-	-	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43958731	43958731	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172069.3	+1	validated	p.K978T	1.000	122	0%	52	40.4%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMSmart_SM00139
PLEKHH2	130271	genome.wustl.edu	37	2	43971009	43971009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172069.3	+1	validated	p.F1146V	1.000	114	0%	68	35.3%	0	-	probably_damaging(0.957)	tolerated(0.22)	neutral(0.443)	HMMSmart_SM00295
ABCG5	64240	genome.wustl.edu	37	2	44051394	44051394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022436.2	-1	reviewed	p.S361Y	0.980	176	0%	164	34.8%	0	-	possibly_damaging(0.66)	deleterious(0.03)	deleterious(0.598)	NULL
SLC3A1	6519	genome.wustl.edu	37	2	44547593	44547593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000341.3	+1	reviewed	p.N625D	0.002	104	0%	41	19.5%	27	40.7%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
SIX2	10736	genome.wustl.edu	37	2	45233309	45233309	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016932.4	-1	reviewed	p.*292Y	1.000	160	0%	251	37.8%	3	33.3%	-	-	-	NULL
SRBD1	55133	genome.wustl.edu	37	2	45829068	45829068	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018079.4	-1	validated	p.E79*	0.000	248	0%	111	20.7%	7	0%	-	-	-	NULL
EPAS1	2034	genome.wustl.edu	37	2	46605824	46605824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001430.4	+1	reviewed	p.S491Y	0.688	153	0%	199	35.7%	17	5.8%	probably_damaging(0.955)	tolerated(0.19)	neutral(0.448)	NULL
ATP6V1E2	90423	genome.wustl.edu	37	2	46739761	46739761	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080653.3	-1	validated	p.I30	1.000	151	0.7%	110	65.5%	9	88.8%	-	-	-	HMMPfam_vATP-synt_E
SOCS5	9655	genome.wustl.edu	37	2	46985893	46985893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014011.4	+1	reviewed	p.S75Y	1.000	114	0%	59	39%	2	100%	possibly_damaging(0.527)	deleterious(0.03)	deleterious(0.542)	NULL
SOCS5	9655	genome.wustl.edu	37	2	46986317	46986317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014011.4	+1	reviewed	p.E216D	0.998	39	0%	16	31.2%	2	0%	possibly_damaging(0.472)	tolerated(0.72)	neutral(0.158)	NULL
SOCS5	9655	genome.wustl.edu	37	2	46986685	46986685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014011.4	+1	reviewed	p.K339T	1.000	50	0%	16	31.2%	22	36.3%	possibly_damaging(0.836)	tolerated(0.11)	deleterious(0.591)	NULL
MSH6	2956	genome.wustl.edu	37	2	48018102	48018102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000179.2	+1	reviewed	p.K99N	1.000	51	0%	103	31.1%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
MSH6	2956	genome.wustl.edu	37	2	48025792	48025792	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000179.2	+1	reviewed	p.E224*	0.040	83	0%	71	26.8%	11	9%	-	-	-	superfamily_Tudor/PWWP/MBT
FBXO11	80204	genome.wustl.edu	37	2	48045990	48045990	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025133.3	-1	reviewed	p.F561C	1.000	134	0%	135	36.3%	41	46.3%	benign(0.034)	deleterious(0.02)	neutral(0.385)	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like,superfamily_SSF81383
PPP1R21	129285	genome.wustl.edu	37	2	48687280	48687280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135629.1	+1	validated	p.R196Q	1.000	115	0%	103	26.2%	19	36.8%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
PPP1R21	129285	genome.wustl.edu	37	2	48725652	48725652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135629.1	+1	validated	p.K571N	1.000	113	0%	81	38.3%	7	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TTKRSYEDQ
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48874030	48874030	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172311.1	+1	reviewed	p.D980A	0.570	136	0%	82	28%	0	-	benign(0.006)	tolerated(0.29)	neutral(0.029)	HMMPfam_TFIIA
LHCGR	3973	genome.wustl.edu	37	2	48950829	48950829	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000233.3	-1	reviewed	p.I130	1.000	131	0%	106	21.7%	0	-	-	-	-	superfamily_L domain-like
GTF2A1L	11036	genome.wustl.edu	37	2	48960031	48960031	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172196.1	+1	reviewed	e9-1	0.000	98	0%	52	26.9%	0	-	-	-	-	-
FSHR	2492	genome.wustl.edu	37	2	49190358	49190358	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000145.3	-1	reviewed	p.L534	1.000	115	0%	65	35.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FSHR	2492	genome.wustl.edu	37	2	49244629	49244629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000145.3	-1	reviewed	p.L125M	1.000	237	0%	61	16.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
NRXN1	9378	genome.wustl.edu	37	2	50779987	50779987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135659.1	-1	reviewed	p.K539N	1.000	208	0%	179	29.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_ConA_like_lec_gl
GPR75	10936	genome.wustl.edu	37	2	54081633	54081633	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006794.2	-1	validated	p.S87	1.000	53	0%	78	23.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SPTBN1	6711	genome.wustl.edu	37	2	54845327	54845327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003128.2	+1	reviewed	p.E254K	1.000	77	0%	54	37%	23	4.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
SPTBN1	6711	genome.wustl.edu	37	2	54851977	54851977	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003128.2	+1	reviewed	p.E407*	1.000	54	0%	43	30.2%	29	3.4%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54856534	54856534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003128.2	+1	reviewed	p.D755Y	1.000	32	0%	35	25.7%	33	15.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EML6	400954	genome.wustl.edu	37	2	55122439	55122439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039753.2	+1	validated	p.R962S	1.000	221	0%	156	32.1%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
EML6	400954	genome.wustl.edu	37	2	55155464	55155464	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039753.2	+1	validated	p.R1230	0.133	68	0%	84	17.9%	3	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
EML6	400954	genome.wustl.edu	37	2	55197221	55197221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039753.2	+1	validated	p.R1956Q	1.000	190	0%	103	12.6%	2	0%	possibly_damaging(0.656)	deleterious(0.03)	deleterious(0.596)	HMMSmart_SM00320,HMMPfam_WD40
RTN4	57142	genome.wustl.edu	37	2	55200750	55200750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020532.4	-1	reviewed	p.I1162T	1.000	200	0%	118	36.4%	107	39.2%	benign(0.342)	deleterious(0)	deleterious(0.552)	HMMPfam_Reticulon
RTN4	57142	genome.wustl.edu	37	2	55214800	55214800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020532.4	-1	reviewed	p.K1016N	1.000	86	0%	89	40.4%	90	34.4%	benign(0.245)	deleterious(0.02)	neutral(0.408)	HMMPfam_Reticulon
C2orf63	130162	genome.wustl.edu	37	2	55433439	55433439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152385.2	-1	validated	p.L325I	1.000	193	0%	108	29.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
RPS27A	6233	genome.wustl.edu	37	2	55460516	55460516	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135592.2	+1	reviewed	p.T22	0.887	101	0%	199	35.2%	1517	37.9%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
MTIF2	4528	genome.wustl.edu	37	2	55471182	55471182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005369.1	-1	reviewed	p.L432I	1.000	123	0%	79	26.6%	38	50%	probably_damaging(0.987)	tolerated(0.23)	deleterious(0.478)	HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor
CCDC88A	55704	genome.wustl.edu	37	2	55530249	55530249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135597.1	-1	validated	p.P1475L	1.000	184	0%	140	30.7%	3	0%	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55559782	55559782	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135597.1	-1	validated	p.L925	0.973	250	0%	235	32.8%	1	0%	-	-	-	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55562165	55562165	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135597.1	-1	validated	p.E598*	1.000	104	0%	66	33.3%	0	-	-	-	-	NULL
CCDC104	112942	genome.wustl.edu	37	2	55772054	55772054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080667.5	+1	validated	p.E313D	1.000	120	0%	51	21.6%	71	50.7%	possibly_damaging(0.862)	tolerated(0.53)	neutral(0.341)	NULL
SMEK2	57223	genome.wustl.edu	37	2	55795425	55795425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122964.1	-1	validated	p.L614I	1.000	104	0%	127	26%	24	41.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM repeat
SMEK2	57223	genome.wustl.edu	37	2	55825750	55825750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122964.1	-1	validated	p.F241L	1.000	88	0%	97	19.6%	23	13%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_DUF625,superfamily_ARM repeat
CCDC85A	114800	genome.wustl.edu	37	2	56419636	56419636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080433.1	+1	provisional	p.D101Y	1.000	40	0%	86	44.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2216
VRK2	7444	genome.wustl.edu	37	2	58350346	58350346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130480.1	+1	reviewed	p.S218R	1.000	118	0%	93	28%	21	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
REL	5966	genome.wustl.edu	37	2	61118884	61118884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002908.2	+1	validated	p.K26T	1.000	161	0%	124	22.6%	4	25%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	PatternScan_REL_1,superfamily_P53_like_DNA_bnd,HMMPfam_RHD
C2orf74	339804	genome.wustl.edu	37	2	61389978	61389978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143959.1	+1	validated	p.F40V	0.004	122	0%	131	26.7%	3	0%	benign(0.075)	tolerated(0.14)	neutral(0.255)	NULL
USP34	9736	genome.wustl.edu	37	2	61415279	61415279	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000411912	-1	known	p.R1210S	1.000	59	0%	70	32.9%	126	37.3%	-	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61415788	61415788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014709.3	-1	validated	p.T3364A	0.994	114	0%	76	35.5%	112	35.7%	benign(0.004)	tolerated(1)	-	NULL
USP34	9736	genome.wustl.edu	37	2	61538750	61538750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014709.3	-1	validated	p.L1248V	1.000	102	0%	46	43.5%	8	37.5%	possibly_damaging(0.793)	-	-	NULL
USP34	9736	genome.wustl.edu	37	2	61558426	61558426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014709.3	-1	validated	p.R972K	1.000	234	0%	103	30.1%	7	42.8%	benign(0.002)	-	-	NULL
FAM161A	84140	genome.wustl.edu	37	2	62067000	62067000	+	Missense_Mutation	SNP	C	C	T	rs182330974	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032180.2	-1	validated	p.R380Q	0.002	137	0%	93	28%	0	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMPfam_UPF0564
FAM161A	84140	genome.wustl.edu	37	2	62067193	62067193	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032180.2	-1	validated	p.E316*	0.000	225	0%	121	38.8%	1	0%	-	-	-	HMMPfam_UPF0564
CEP68	23177	genome.wustl.edu	37	2	65309732	65309732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015147.2	+1	validated	p.R723C	0.239	161	0%	122	29.5%	11	9%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	superfamily_Spectrin repeat
RAB1A	5861	genome.wustl.edu	37	2	65315768	65315768	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004161.4	-1	reviewed	p.T159	0.996	115	0%	75	37.3%	322	43.4%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACTR2	10097	genome.wustl.edu	37	2	65482738	65482738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005386.2	+1	reviewed	p.M220I	1.000	198	0%	126	27%	154	41.5%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ETAA1	54465	genome.wustl.edu	37	2	67631277	67631277	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019002.3	+1	validated	p.I488S	0.000	42	0%	32	31.2%	3	0%	benign(0.041)	deleterious(0.04)	neutral(0.351)	NULL
APLF	200558	genome.wustl.edu	37	2	68740234	68740234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173545.2	+1	validated	p.D122Y	0.999	70	0%	31	35.5%	0	-	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
BMP10	27302	genome.wustl.edu	37	2	69093541	69093541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014482.1	-1	reviewed	p.T166I	1.000	85	0%	35	20%	0	-	benign(0.001)	tolerated(0.36)	neutral(0.020)	HMMPfam_TGFb_propeptide
BMP10	27302	genome.wustl.edu	37	2	69093667	69093667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014482.1	-1	reviewed	p.R124Q	1.000	54	0%	22	27.3%	0	-	benign(0.033)	tolerated(0.6)	neutral(0.006)	HMMPfam_TGFb_propeptide
ANTXR1	84168	genome.wustl.edu	37	2	69302780	69302780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032208.2	+1	reviewed	p.N184S	1.000	332	0%	225	26.2%	24	4.1%	probably_damaging(0.979)	tolerated(0.39)	neutral(0.438)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ANTXR1	84168	genome.wustl.edu	37	2	69350208	69350208	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032208.2	+1	reviewed	p.E288*	1.000	219	0%	181	25.4%	22	9%	-	-	-	HMMPfam_Anth_Ig
AAK1	22848	genome.wustl.edu	37	2	69736382	69736382	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000409068	-1	known	e13+1	1.000	76	0%	92	41.3%	7	57.1%	-	-	-	-
TIA1	7072	genome.wustl.edu	37	2	70463223	70463223	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022173.2	-1	reviewed	p.K37N	1.000	99	0%	95	25.3%	67	43.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
SNRPG	6637	genome.wustl.edu	37	2	70515289	70515289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429728	-1	known	p.I23T	0.991	124	0%	152	33.6%	200	45.5%	-	-	-	NULL
ADD2	119	genome.wustl.edu	37	2	70904961	70904961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001617.3	-1	reviewed	p.R478C	0.993	97	0%	84	64.3%	1	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
ATP6V1B1	525	genome.wustl.edu	37	2	71191979	71191979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001692.3	+1	reviewed	p.K454N	1.000	35	0%	50	32%	8	75%	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
MPHOSPH10	10199	genome.wustl.edu	37	2	71376430	71376430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005791.1	+1	reviewed	p.K581N	1.000	76	0%	53	34%	15	53.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Mpp10
PAIP2B	400961	genome.wustl.edu	37	2	71415636	71415636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020459.1	-1	validated	p.K115N	1.000	134	0%	95	13.7%	20	15%	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	HMMPfam_PAM2
DYSF	8291	genome.wustl.edu	37	2	71766338	71766338	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130987.1	+1	reviewed	p.S515	0.948	145	1.4%	208	33.2%	3	0%	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
DYSF	8291	genome.wustl.edu	37	2	71780260	71780260	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130987.1	+1	reviewed	p.F642	0.991	40	0%	73	24.7%	4	0%	-	-	-	NULL
DYSF	8291	genome.wustl.edu	37	2	71871127	71871127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130987.1	+1	reviewed	p.F1520L	1.000	100	0%	65	27.7%	3	0%	benign(0.329)	tolerated(0.29)	neutral(0.132)	NULL
EGR4	1961	genome.wustl.edu	37	2	73518976	73518976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001965.3	-1	validated	p.R357Q	0.993	24	0%	18	55.6%	0	-	possibly_damaging(0.951)	deleterious(0.02)	deleterious(0.777)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73675536	73675536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015120.4	+1	reviewed	p.P627S	0.000	66	0%	21	38.1%	0	-	benign(0.002)	tolerated(0.7)	neutral(0.002)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73682397	73682397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015120.4	+1	reviewed	p.H2549R	0.940	150	0%	81	16%	5	40%	possibly_damaging(0.84)	tolerated(0.06)	deleterious(0.644)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73800165	73800165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015120.4	+1	reviewed	p.L3720M	0.977	51	0%	18	27.8%	4	75%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DUSP11	8446	genome.wustl.edu	37	2	74002160	74002160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003584.2	-1	reviewed	p.K110N	0.019	165	0%	168	33.3%	6	33.3%	benign(0.089)	tolerated(0.41)	neutral(0.021)	superfamily_(Phosphotyrosine protein) phosphatases II
C2orf78	388960	genome.wustl.edu	37	2	74042284	74042284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080474.1	+1	predicted	p.S312P	0.001	85	0%	122	24.6%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
DCTN1	1639	genome.wustl.edu	37	2	74607140	74607140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004082.3	-1	reviewed	p.Y9H	1.000	130	0%	184	25%	0	-	benign(0.019)	tolerated(0.51)	neutral(0.010)	NULL
INO80B	83444	genome.wustl.edu	37	2	74683355	74683355	+	Missense_Mutation	SNP	G	G	T	rs35471275		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031288.2	+1	validated	p.D166Y	1.000	169	0%	270	25.6%	49	20.4%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CCDC142	84865	genome.wustl.edu	37	2	74702236	74702236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032779.3	-1	validated	p.Q594H	1.000	37	0%	73	20.5%	6	33.3%	probably_damaging(0.998)	tolerated(0.54)	deleterious(0.482)	NULL
CCDC142	84865	genome.wustl.edu	37	2	74709441	74709441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032779.3	-1	validated	p.A175V	0.014	13	0%	16	43.8%	3	33.3%	possibly_damaging(0.583)	deleterious(0)	deleterious(0.645)	NULL
AUP1	550	genome.wustl.edu	37	2	74754422	74754422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181575.3	-1	reviewed	p.D344N	1.000	57	0%	92	9.8%	377	21.7%	benign(0.139)	deleterious(0.04)	neutral(0.361)	NULL
HTRA2	27429	genome.wustl.edu	37	2	74758800	74758800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013247.4	+1	reviewed	p.R339Q	0.999	174	0%	310	32.3%	46	50%	probably_damaging(0.982)	tolerated(0.23)	neutral(0.468)	HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases
TACR1	6869	genome.wustl.edu	37	2	75347737	75347737	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001058.3	-1	reviewed	p.E183*	0.629	31	0%	32	28.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TACR1	6869	genome.wustl.edu	37	2	75425860	75425860	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001058.3	-1	reviewed	p.T67	0.999	183	0%	268	31.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TACR1	6869	genome.wustl.edu	37	2	75425874	75425874	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001058.3	-1	reviewed	p.M63L	1.000	211	0%	302	32.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TACR1	6869	genome.wustl.edu	37	2	75425924	75425924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001058.3	-1	reviewed	p.S46Y	1.000	221	0.5%	346	33.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
MRPL19	9801	genome.wustl.edu	37	2	75882236	75882236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014763.3	+1	reviewed	p.R235H	1.000	58	0%	57	31.6%	31	45.1%	possibly_damaging(0.682)	deleterious(0)	deleterious(0.688)	NULL
REG3G	130120	genome.wustl.edu	37	2	79253277	79253277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008387.1	+1	validated	p.L20I	0.014	221	0%	85	35.3%	1	0%	benign(0.01)	tolerated(0.25)	neutral(0.037)	NULL
REG1A	5967	genome.wustl.edu	37	2	79348748	79348748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002909.4	+1	reviewed	p.A42D	0.004	197	0%	148	23.6%	1	100%	probably_damaging(0.967)	deleterious(0.04)	deleterious(0.758)	HMMSmart_SM00034,superfamily_C-type lectin-like
REG1A	5967	genome.wustl.edu	37	2	79350041	79350041	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002909.4	+1	reviewed	p.V132	0.001	81	0%	51	27.5%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
REG1A	5967	genome.wustl.edu	37	2	79350314	79350314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002909.4	+1	reviewed	p.F158L	0.004	119	0%	67	31.3%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
CTNNA2	1496	genome.wustl.edu	37	2	80874923	80874923	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004389.3	+1	validated	p.R882*	0.998	51	0%	31	45.2%	30	63.3%	-	-	-	NULL
DNAH6	1768	genome.wustl.edu	37	2	84756154	84756154	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001370.1	+1	validated	p.E176*	0.996	134	0%	50	28%	1	0%	-	-	-	NULL
DNAH6	1768	genome.wustl.edu	37	2	84844015	84844015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001370.1	+1	validated	p.L1161M	1.000	33	0%	17	29.4%	0	-	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	HMMPfam_DHC_N2
DNAH6	1768	genome.wustl.edu	37	2	84844035	84844035	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001370.1	+1	validated	p.N1167K	1.000	49	0%	21	23.8%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_DHC_N2
DNAH6	1768	genome.wustl.edu	37	2	84896557	84896557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001370.1	+1	validated	p.R2077C	1.000	153	0%	76	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH6	1768	genome.wustl.edu	37	2	84915613	84915613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001370.1	+1	validated	p.E2396D	0.898	167	0%	65	15.4%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH6	1768	genome.wustl.edu	37	2	84934721	84934721	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001370.1	+1	validated	p.R2977*	1.000	136	0.7%	65	23.1%	0	-	-	-	-	NULL
TCF7L1	83439	genome.wustl.edu	37	2	85361471	85361471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031283.1	+1	provisional	p.F113L	0.999	94	0%	140	33.6%	27	40.7%	probably_damaging(0.973)	tolerated(0.9)	neutral(0.415)	HMMPfam_CTNNB1_binding
USP39	10713	genome.wustl.edu	37	2	85868169	85868169	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006590.2	+1	validated	p.F452C	1.000	115	0%	92	32.6%	56	46.4%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_UCH,superfamily_Cysteine proteinases
SFTPB	6439	genome.wustl.edu	37	2	85893781	85893781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000542.3	-1	reviewed	p.D118N	0.000	68	0%	126	37.3%	0	-	benign(0.009)	tolerated(0.14)	neutral(0.250)	HMMPfam_SapB_2,HMMSmart_SapB,superfamily_Saposin_like
ST3GAL5	8869	genome.wustl.edu	37	2	86094728	86094728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042437.1	-1	reviewed	p.P5S	0.009	90	0%	64	21.9%	0	-	benign(0.051)	-	-	NULL
POLR1A	25885	genome.wustl.edu	37	2	86269061	86269061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015425.3	-1	validated	p.A1175T	1.000	141	0%	160	33.8%	22	45.4%	benign(0.273)	tolerated(0.36)	neutral(0.049)	HMMPfam_RNA_pol_Rpb1_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1A	25885	genome.wustl.edu	37	2	86327194	86327194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015425.3	-1	validated	p.S60F	0.471	112	0%	84	25%	11	36.3%	probably_damaging(0.97)	deleterious(0.05)	deleterious(0.758)	HMMPfam_RNA_pol_Rpb1_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
PTCD3	55037	genome.wustl.edu	37	2	86335628	86335628	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017952.5	+1	validated	p.E55*	1.000	166	0%	207	26.6%	11	0%	-	-	-	NULL
PTCD3	55037	genome.wustl.edu	37	2	86352160	86352160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017952.5	+1	validated	p.E253D	1.000	171	0%	96	33.3%	33	9%	probably_damaging(0.986)	tolerated(0.53)	neutral(0.442)	NULL
PTCD3	55037	genome.wustl.edu	37	2	86360337	86360337	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017952.5	+1	validated	p.Q470H	0.973	271	0%	144	33.3%	34	50%	benign(0.225)	tolerated(0.22)	neutral(0.065)	NULL
MRPL35	51318	genome.wustl.edu	37	2	86437652	86437652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016622.3	+1	reviewed	p.R143Q	1.000	71	0%	62	33.9%	24	41.6%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_MRP-L35
RNF103	7844	genome.wustl.edu	37	2	86849955	86849955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005667.2	-1	reviewed	p.A19T	1.000	51	0%	99	31.3%	13	46.1%	unknown(0)	deleterious(0.01)	-	NULL
RMND5A	64795	genome.wustl.edu	37	2	86968107	86968107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022780.3	+1	validated	p.R67I	1.000	369	0%	172	12.8%	47	8.5%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
EIF2AK3	9451	genome.wustl.edu	37	2	88874663	88874663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004836.5	-1	reviewed	p.D780Y	0.862	160	0%	74	31.1%	23	30.4%	benign(0.229)	tolerated(0.24)	neutral(0.060)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF2AK3	9451	genome.wustl.edu	37	2	88874868	88874868	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004836.5	-1	reviewed	p.I711	1.000	154	0%	87	32.2%	10	40%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ANKRD36BP2	645784	genome.wustl.edu	37	2	89072558	89072558	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_015424.1	+1	predicted	NULL	0.005	74	0%	70	28.6%	5	20%	-	-	-	-
ANKRD36BP2	645784	genome.wustl.edu	37	2	89085999	89085999	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_015424.1	+1	predicted	NULL	0.007	98	0%	40	17.5%	1	0%	-	-	-	-
IGKC	3514	genome.wustl.edu	37	2	89156877	89156877	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390237	-1	known	p.V107A	0.091	117	0%	92	34.8%	8039	0%	-	-	-	superfamily_Immunoglobulin
IGKV1-5	28299	genome.wustl.edu	37	2	89246820	89246820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000496168	-1	known	p.S117Y	0.279	218	0%	122	29.5%	220	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMSmart_SM00409,superfamily_Immunoglobulin
IGKV3-11	28914	genome.wustl.edu	37	2	89326834	89326834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000483158	-1	known	p.P60H	0.952	210	0%	67	38.8%	1320	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGKV6-21	28906	genome.wustl.edu	37	2	89459295	89459295	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390256	-1	known	p.I94	0.998	148	0%	73	23.3%	23	0%	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGKV1-33	28933	genome.wustl.edu	37	2	89568002	89568002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000473726	-1	known	p.S36F	0.000	202	0%	61	8.2%	566	0.1%	possibly_damaging(0.438)	deleterious(0.01)	deleterious(0.548)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV3D-15	28875	genome.wustl.edu	37	2	90154147	90154147	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000417279	+1	known	p.I78	0.155	199	0%	70	30%	457	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1D-42	28892	genome.wustl.edu	37	2	90229387	90229387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390278	+1	known	p.F69L	1.000	132	0%	37	24.3%	0	-	benign(0)	tolerated(1)	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGKV1D-43	28891	genome.wustl.edu	37	2	90249117	90249117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000468879	+1	known	p.R25W	0.001	152	0%	72	36.1%	4	0%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_V-set,superfamily_Immunoglobulin
ZNF514	84874	genome.wustl.edu	37	2	95818891	95818891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032788.1	-1	provisional	p.N36K	0.994	104	0%	110	25.5%	13	61.5%	possibly_damaging(0.802)	deleterious(0.05)	deleterious(0.647)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
LOC344065	344065	genome.wustl.edu	37	2	95880588	95880588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_292895.7	+1	model	p.R285I	0.965	43	0%	32	34.4%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC344065	344065	genome.wustl.edu	37	2	95881108	95881108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_292895.7	+1	model	p.E458D	1.000	35	0%	29	31%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC400986	400986	genome.wustl.edu	37	2	96553862	96553862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001717763.2	-1	model	p.S640Y	0.015	261	0%	100	33%	1	0%	possibly_damaging(0.449)	deleterious(0.04)	deleterious(0.496)	NULL
LOC400986	400986	genome.wustl.edu	37	2	96583646	96583646	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001717763.2	-1	model	p.S487	0.001	190	0%	68	33.8%	0	-	-	-	-	NULL
GPAT2	150763	genome.wustl.edu	37	2	96697841	96697841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207328.2	-1	validated	p.F39L	0.993	87	0%	101	26.7%	3	0%	possibly_damaging(0.942)	tolerated(0.92)	neutral(0.387)	NULL
ADRA2B	151	genome.wustl.edu	37	2	96781615	96781615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000409345	-1	known	p.D92N	1.000	37	0%	68	33.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TMEM127	55654	genome.wustl.edu	37	2	96920705	96920705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017849.1	-1	provisional	p.L92P	1.000	41	0%	35	40%	44	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CIAO1	9391	genome.wustl.edu	37	2	96933609	96933609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004804.2	+1	validated	p.L146F	0.996	60	0%	115	38.3%	69	40.5%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SNRNP200	23020	genome.wustl.edu	37	2	96952886	96952886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014014.3	-1	reviewed	p.R1166H	1.000	88	0%	93	32.3%	134	46.2%	benign(0.139)	tolerated(0.17)	neutral(0.071)	HMMPfam_Sec63,HMMSmart_SM00611
SNRNP200	23020	genome.wustl.edu	37	2	96959180	96959180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014014.3	-1	reviewed	p.R637Q	1.000	66	0%	45	37.8%	83	30.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FER1L5	90342	genome.wustl.edu	37	2	97326103	97326103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113382.1	+1	provisional	p.S241Y	0.998	108	0%	72	18.1%	0	-	possibly_damaging(0.677)	deleterious(0.05)	deleterious(0.587)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerI
FER1L5	90342	genome.wustl.edu	37	2	97334643	97334643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113382.1	+1	provisional	p.D385G	0.947	113	0%	78	29.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L5	90342	genome.wustl.edu	37	2	97365294	97365294	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113382.1	+1	provisional	p.E1567*	1.000	106	0%	140	28.6%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CNNM4	26504	genome.wustl.edu	37	2	97428051	97428051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020184.3	+1	reviewed	p.K439E	1.000	117	0%	219	26%	4	75%	possibly_damaging(0.675)	deleterious(0.03)	deleterious(0.604)	HMMPfam_CBS
ANKRD23	200539	genome.wustl.edu	37	2	97508187	97508187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144994.7	-1	reviewed	p.G30E	1.000	172	0%	256	31.6%	2	0%	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	NULL
SEMA4C	54910	genome.wustl.edu	37	2	97530782	97530782	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017789.4	-1	validated	p.V235	1.000	72	0%	81	21%	55	10.9%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
ANKRD36	375248	genome.wustl.edu	37	2	97810406	97810406	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.S320	0.002	125	0%	53	18.9%	0	-	-	-	-	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97847476	97847476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.D595Y	0.398	145	0%	46	19.6%	2	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97853095	97853095	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.S700	0.001	140	0%	63	28.6%	1	100%	-	-	-	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97856725	97856725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.Q718H	0.075	369	0%	129	26.4%	0	-	benign(0.05)	deleterious(0.01)	neutral(0.409)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97873689	97873689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.D901Y	0.033	146	0%	58	22.4%	1	0%	possibly_damaging(0.538)	deleterious(0)	deleterious(0.627)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97875443	97875443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.L927F	0.010	346	0%	117	29.1%	0	-	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97877311	97877311	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.K962	0.166	245	0%	74	36.5%	0	-	-	-	-	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97911236	97911236	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000461153	+1	known	p.R1441*	0.003	156	0%	92	30.4%	1	0%	-	-	-	NULL
ANKRD36B	57730	genome.wustl.edu	37	2	98128389	98128389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025190.3	-1	provisional	p.D746Y	0.503	168	0%	83	21.7%	2	0%	-	-	-	NULL
ZAP70	7535	genome.wustl.edu	37	2	98354262	98354262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079.3	+1	reviewed	p.E509K	1.000	70	0%	148	28.4%	42	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TMEM131	23505	genome.wustl.edu	37	2	98413338	98413338	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015348.1	-1	validated	p.I994	1.000	146	0%	150	26.7%	18	33.3%	-	-	-	NULL
VWA3B	200403	genome.wustl.edu	37	2	98709732	98709732	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144992.4	+1	provisional	p.I59	0.968	64	0%	80	38.8%	1	0%	-	-	-	NULL
CNGA3	1261	genome.wustl.edu	37	2	98986517	98986517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001298.2	+1	reviewed	p.R27C	0.000	176	0%	136	29.4%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
CNGA3	1261	genome.wustl.edu	37	2	99006197	99006197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001298.2	+1	reviewed	p.A176T	0.183	81	0%	76	38.2%	0	-	benign(0.016)	tolerated(0.72)	neutral(0.002)	superfamily_SSF81324
INPP4A	3631	genome.wustl.edu	37	2	99198037	99198037	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001566.2	+1	reviewed	e24-2	1.000	95	0%	146	31.5%	0	-	-	-	-	-
UNC50	25972	genome.wustl.edu	37	2	99226346	99226346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014044.5	+1	validated	p.R42W	0.983	120	0%	163	34.4%	70	44.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_UNC-50
MGAT4A	11320	genome.wustl.edu	37	2	99251711	99251711	+	Missense_Mutation	SNP	C	C	T	rs182193794	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012214.2	-1	reviewed	p.R481Q	1.000	337	0%	391	29.9%	2	0%	benign(0.026)	tolerated(0.33)	neutral(0.025)	NULL
TSGA10	80705	genome.wustl.edu	37	2	99651847	99651847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025244.2	-1	validated	p.V487A	0.989	90	0%	34	20.6%	1	0%	benign(0.013)	deleterious(0.01)	neutral(0.406)	NULL
LIPT1	51601	genome.wustl.edu	37	2	99778626	99778626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015929.3	+1	reviewed	p.S69F	0.986	98	0%	84	38.1%	8	62.5%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
LIPT1	51601	genome.wustl.edu	37	2	99779337	99779337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015929.3	+1	reviewed	p.R306I	0.970	65	0%	60	30%	2	100%	benign(0.002)	tolerated(0.48)	neutral(0.011)	NULL
EIF5B	9669	genome.wustl.edu	37	2	100006721	100006721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015904.3	+1	reviewed	p.R815C	1.000	237	0%	225	32.9%	54	53.7%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
EIF5B	9669	genome.wustl.edu	37	2	100015222	100015222	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015904.3	+1	reviewed	p.I1135	0.993	125	0%	89	40.4%	82	47.5%	-	-	-	superfamily_Translation proteins
REV1	51455	genome.wustl.edu	37	2	100022486	100022486	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016316.2	-1	reviewed	p.P899	0.035	86	0%	66	36.4%	54	48.1%	-	-	-	NULL
REV1	51455	genome.wustl.edu	37	2	100065844	100065844	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016316.2	-1	reviewed	p.E102*	1.000	183	0%	105	28.6%	8	50%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
CHST10	9486	genome.wustl.edu	37	2	101009761	101009761	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004854.3	-1	validated	p.F339	0.882	179	0%	224	33.5%	30	63.3%	-	-	-	HMMPfam_Sulfotransfer_2
RFX8	731220	genome.wustl.edu	37	2	102018937	102018937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145664.1	-1	validated	p.R402S	0.986	35	0%	46	21.7%	1	0%	possibly_damaging(0.582)	deleterious(0.01)	deleterious(0.606)	NULL
RFX8	731220	genome.wustl.edu	37	2	102027155	102027155	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145664.1	-1	validated	p.L247V	1.000	140	0%	134	34.3%	0	-	possibly_damaging(0.749)	tolerated(0.07)	deleterious(0.594)	NULL
RFX8	731220	genome.wustl.edu	37	2	102038842	102038842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145664.1	-1	validated	p.K55N	1.000	160	0%	108	32.4%	0	-	benign(0.001)	tolerated(0.86)	neutral(0.001)	NULL
IL1RL2	8808	genome.wustl.edu	37	2	102805708	102805708	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003854.2	+1	reviewed	p.E77	0.005	113	0%	181	28.7%	0	-	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
IL18RAP	8807	genome.wustl.edu	37	2	103059755	103059755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003853.2	+1	reviewed	p.W298G	0.000	95	0%	92	34.8%	0	-	benign(0.031)	tolerated(0.7)	neutral(0.004)	HMMSmart_SM00409,superfamily_Immunoglobulin
IL18RAP	8807	genome.wustl.edu	37	2	103068259	103068259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003853.2	+1	reviewed	p.R473I	0.994	117	0%	91	26.4%	1	0%	possibly_damaging(0.805)	deleterious(0.02)	deleterious(0.686)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
SLC9A4	389015	genome.wustl.edu	37	2	103090236	103090236	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011552.3	+1	validated	p.F6	0.000	122	0%	93	31.2%	0	-	-	-	-	NULL
SLC9A4	389015	genome.wustl.edu	37	2	103125390	103125390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011552.3	+1	validated	p.R496C	0.990	122	0%	60	36.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107040336	107040336	+	Nonsense_Mutation	SNP	C	C	A	rs71230083		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144013.1	-1	validated	p.E1363*	1.000	177	0%	103	22.3%	0	-	-	-	-	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RGPD3	653489	genome.wustl.edu	37	2	107050701	107050701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144013.1	-1	validated	p.L730I	0.890	559	0%	196	19.9%	0	-	benign(0.006)	tolerated(0.64)	neutral(0.003)	NULL
SLC5A7	60482	genome.wustl.edu	37	2	108627063	108627063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021815.2	+1	provisional	p.L497I	1.000	164	0%	114	28.9%	0	-	benign(0.003)	tolerated(0.35)	neutral(0.021)	NULL
GCC2	9648	genome.wustl.edu	37	2	109116056	109116056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181453.3	+1	reviewed	p.E1610D	1.000	1185	0%	556	15.1%	14	21.4%	possibly_damaging(0.931)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109370342	109370342	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006267.4	+1	reviewed	p.E706A	1.000	757	0%	291	25.1%	6	16.6%	unknown(0)	-	-	NULL
CCDC138	165055	genome.wustl.edu	37	2	109463276	109463276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144978.1	+1	provisional	p.S469Y	0.004	93	0%	67	43.3%	4	0%	possibly_damaging(0.644)	tolerated(0.17)	neutral(0.284)	NULL
SH3RF3	344558	genome.wustl.edu	37	2	110048973	110048973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000309415	+1	known	p.A474T	0.991	50	0%	59	30.5%	2	0%	possibly_damaging(0.641)	tolerated(0.45)	neutral(0.237)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
SH3RF3	344558	genome.wustl.edu	37	2	110048997	110048997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000309415	+1	known	p.E482K	1.000	65	0%	64	14.1%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
SEPT10	151011	genome.wustl.edu	37	2	110350673	110350673	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144710.2	-1	reviewed	p.T18	0.006	158	0%	150	36%	6	16.6%	-	-	-	NULL
MALL	7851	genome.wustl.edu	37	2	110849336	110849336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005434.4	-1	validated	p.F39L	0.999	102	0%	116	21.6%	5	0%	unknown(0)	-	-	HMMPfam_MARVEL
NPHP1	4867	genome.wustl.edu	37	2	110959016	110959016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000272.3	-1	reviewed	p.R42I	0.957	333	0%	529	28.5%	8	12.5%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
BUB1	699	genome.wustl.edu	37	2	111415133	111415133	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004336.3	-1	reviewed	p.E536*	1.000	133	0%	92	29.3%	15	13.3%	-	-	-	NULL
BUB1	699	genome.wustl.edu	37	2	111416286	111416286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004336.3	-1	reviewed	p.S437Y	0.938	281	0%	139	25.9%	15	13.3%	possibly_damaging(0.931)	tolerated(0.05)	deleterious(0.723)	NULL
BUB1	699	genome.wustl.edu	37	2	111425173	111425173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004336.3	-1	reviewed	p.R244C	0.997	152	0%	88	23.9%	10	30%	benign(0.021)	tolerated(0.41)	neutral(0.016)	NULL
FBLN7	129804	genome.wustl.edu	37	2	112944857	112944857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153214.2	+1	validated	p.R365Q	0.822	47	0%	61	31.1%	5	20%	probably_damaging(0.99)	tolerated(0.3)	deleterious(0.470)	NULL
ZC3H8	84524	genome.wustl.edu	37	2	112991747	112991747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032494.2	-1	validated	p.R191C	1.000	267	0%	131	32.1%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZC3H8	84524	genome.wustl.edu	37	2	113007846	113007846	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032494.2	-1	validated	p.I26	0.987	300	0.3%	301	32.9%	6	83.3%	-	-	-	NULL
RGPD8	727851	genome.wustl.edu	37	2	113147513	113147513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000302558	-1	known	p.F1003L	1.000	234	0%	73	16.4%	7	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
RGPD8	727851	genome.wustl.edu	37	2	113147577	113147577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000302558	-1	known	p.G982E	1.000	350	0%	112	17%	4	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
POLR1B	84172	genome.wustl.edu	37	2	113326363	113326363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019014.4	+1	validated	p.A653D	0.001	224	0%	93	29%	18	44.4%	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_RNA_pol_Rpb2_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
SLC20A1	6574	genome.wustl.edu	37	2	113417110	113417110	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005415.3	+1	provisional	p.R460*	1.000	57	0%	48	35.4%	55	14.5%	-	-	-	HMMPfam_PHO4
IL36G	56300	genome.wustl.edu	37	2	113742464	113742464	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019618.2	+1	reviewed	p.P116	0.530	117	0%	50	32%	0	-	-	-	-	HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine
MIR1302-3	100302128	genome.wustl.edu	37	2	114340613	114340613	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000408128	-1	known	NULL	0.144	369	0%	805	13.9%	0	-	-	-	-	-
ENSG00000251207	0	genome.wustl.edu	37	2	114415849	114415849	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000514936	-1	novel	NULL	1.000	153	0%	216	29.6%	2	0%	-	-	-	-
DPP10	57628	genome.wustl.edu	37	2	116535403	116535403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020868.3	+1	validated	p.L452M	1.000	136	0%	69	33.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP10	57628	genome.wustl.edu	37	2	116548905	116548905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020868.3	+1	validated	p.R558Q	1.000	287	0%	371	32.1%	1	0%	possibly_damaging(0.623)	tolerated(0.18)	neutral(0.273)	superfamily_alpha/beta-Hydrolases
DDX18	8886	genome.wustl.edu	37	2	118586971	118586971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006773.3	+1	reviewed	p.N600S	0.902	200	0%	259	30.9%	34	44.1%	benign(0.004)	tolerated(0.06)	neutral(0.323)	NULL
CCDC93	54520	genome.wustl.edu	37	2	118766198	118766198	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019044.3	-1	validated	p.L27	1.000	216	0%	271	30.3%	6	66.6%	-	-	-	HMMPfam_KOG2701
MARCO	8685	genome.wustl.edu	37	2	119727772	119727772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006770.3	+1	reviewed	p.F94L	0.001	75	0%	49	22.4%	13	0%	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	NULL
STEAP3	55240	genome.wustl.edu	37	2	120005503	120005503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182915.2	+1	validated	p.F257L	1.000	23	0%	46	28.3%	72	44.4%	benign(0.067)	tolerated(0.15)	neutral(0.245)	NULL
DBI	1622	genome.wustl.edu	37	2	120129878	120129878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079863.1	+1	reviewed	p.K84T	0.963	165	0%	220	30%	333	45.6%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_ACBP,superfamily_ACBP
SCTR	6344	genome.wustl.edu	37	2	120236416	120236416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002980.2	-1	reviewed	p.R91I	0.016	74	0%	98	36.7%	0	-	benign(0.418)	tolerated(0.14)	neutral(0.385)	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793)
PTPN4	5775	genome.wustl.edu	37	2	120635108	120635108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002830.2	+1	reviewed	p.E120*	1.000	103	0%	45	28.9%	7	14.2%	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
PTPN4	5775	genome.wustl.edu	37	2	120672775	120672775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002830.2	+1	reviewed	p.S262Y	1.000	63	0%	44	31.8%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_C,superfamily_SSF50729
PTPN4	5775	genome.wustl.edu	37	2	120702656	120702656	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002830.2	+1	reviewed	e15-1	1.000	82	0%	51	29.4%	0	-	-	-	-	-
EPB41L5	57669	genome.wustl.edu	37	2	120889210	120889210	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020909.3	+1	validated	p.S506	0.973	73	0%	15	33.3%	0	-	-	-	-	NULL
GLI2	2736	genome.wustl.edu	37	2	121708927	121708927	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005270.4	+1	reviewed	p.Y121	0.996	50	0%	72	33.3%	1	0%	-	-	-	NULL
CLASP1	23332	genome.wustl.edu	37	2	122120867	122120867	+	Nonsense_Mutation	SNP	G	G	A	rs145127425	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015282.2	-1	validated	p.R1363*	1.000	155	0%	187	28.9%	28	21.4%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122273335	122273335	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015282.2	-1	validated	p.R184*	1.000	189	0%	142	12%	4	0%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122285415	122285415	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015282.2	-1	validated	p.R144*	0.880	101	0%	149	40.9%	5	20%	-	-	-	superfamily_ARM repeat
MKI67IP	84365	genome.wustl.edu	37	2	122485320	122485320	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032390.4	-1	reviewed	p.R288*	0.779	335	0%	265	12.5%	23	13%	-	-	-	NULL
CNTNAP5	129684	genome.wustl.edu	37	2	125530500	125530500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130773.2	+1	reviewed	p.E885D	0.996	123	0%	53	24.5%	0	-	probably_damaging(0.986)	tolerated(0.08)	deleterious(0.734)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CNTNAP5	129684	genome.wustl.edu	37	2	125622999	125622999	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130773.2	+1	reviewed	p.E1111*	0.995	105	0%	54	31.5%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CYP27C1	339761	genome.wustl.edu	37	2	127953003	127953003	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001665.3	-1	reviewed	p.E209	0.997	131	0%	173	33.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP27C1	339761	genome.wustl.edu	37	2	127960975	127960975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001665.3	-1	reviewed	p.D51Y	1.000	168	0%	252	31%	0	-	benign(0.078)	deleterious(0.04)	neutral(0.354)	HMMPfam_p450,superfamily_Cytochrome P450
CYP27C1	339761	genome.wustl.edu	37	2	127961053	127961053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001665.3	-1	reviewed	p.V25F	1.000	219	0%	275	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
ERCC3	2071	genome.wustl.edu	37	2	128046300	128046300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000122.1	-1	reviewed	p.E321D	1.000	88	0%	80	25%	44	40.9%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
IWS1	55677	genome.wustl.edu	37	2	128262938	128262938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017969.2	-1	validated	p.Q181K	0.559	137	0%	81	37%	26	23%	benign(0.059)	tolerated(0.53)	neutral(0.011)	NULL
IWS1	55677	genome.wustl.edu	37	2	128281287	128281287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017969.2	-1	validated	p.G39R	1.000	141	0%	242	33.1%	40	7.5%	probably_damaging(0.998)	tolerated(0.71)	deleterious(0.476)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128383090	128383090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080527.1	+1	provisional	p.V1373I	0.475	12	0%	22	36.4%	0	-	benign(0.135)	tolerated(0.99)	neutral(0.011)	superfamily_Second domain of FERM,HMMSmart_SM00295
MYO7B	4648	genome.wustl.edu	37	2	128389237	128389237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080527.1	+1	provisional	p.D1694N	1.000	30	0%	54	37%	0	-	possibly_damaging(0.948)	deleterious(0.04)	deleterious(0.740)	HMMPfam_MyTH4,HMMSmart_SM00139
MYO7B	4648	genome.wustl.edu	37	2	128392207	128392207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080527.1	+1	provisional	p.S1862A	0.950	132	0%	222	23.4%	1	0%	probably_damaging(0.969)	tolerated(0.08)	deleterious(0.712)	HMMSmart_SM00295
UGGT1	56886	genome.wustl.edu	37	2	128913066	128913066	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020120.3	+1	validated	p.N714T	1.000	221	0%	110	24.5%	16	37.5%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
UGGT1	56886	genome.wustl.edu	37	2	128913100	128913100	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020120.3	+1	validated	p.I725	0.011	220	0%	103	30.1%	12	33.3%	-	-	-	NULL
UGGT1	56886	genome.wustl.edu	37	2	128938626	128938626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020120.3	+1	validated	p.L1355M	1.000	229	0%	85	22.4%	26	46.1%	possibly_damaging(0.774)	deleterious(0.01)	deleterious(0.694)	superfamily_Nucleotide-diphospho-sugar transferases
POTEF	728378	genome.wustl.edu	37	2	130872573	130872573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099771.2	-1	validated	p.D231Y	0.919	618	0%	587	19.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CCDC74B	91409	genome.wustl.edu	37	2	130897141	130897141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207310.1	-1	provisional	p.R377H	0.995	43	0%	89	23.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POTEE	445582	genome.wustl.edu	37	2	131976293	131976293	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083538.1	+1	validated	p.F106	0.004	164	0%	305	23%	0	-	-	-	-	superfamily_Ankyrin repeat
POTEE	445582	genome.wustl.edu	37	2	132021086	132021086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083538.1	+1	validated	p.K686N	0.221	176	0%	205	20%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
CCDC74A	90557	genome.wustl.edu	37	2	132290304	132290304	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138770.1	+1	provisional	p.E276K	1.000	159	0%	221	26.2%	3	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
GPR39	2863	genome.wustl.edu	37	2	133402827	133402827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001508.2	+1	validated	p.S337L	1.000	63	0%	120	35%	54	46.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NCKAP5	344148	genome.wustl.edu	37	2	133542139	133542139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207363.2	-1	validated	p.D749Y	0.010	127	0%	61	24.6%	3	33.3%	benign(0.422)	deleterious(0.01)	deleterious(0.542)	NULL
CCNT2	905	genome.wustl.edu	37	2	135694462	135694462	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058241.1	+1	reviewed	p.R98*	1.000	229	0%	117	33.3%	8	25%	-	-	-	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
CCNT2	905	genome.wustl.edu	37	2	135711715	135711715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058241.1	+1	reviewed	p.P564T	0.176	53	0%	54	40.7%	49	55.1%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
YSK4	80122	genome.wustl.edu	37	2	135738613	135738613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025052.3	-1	validated	p.W1233L	1.000	111	0%	100	35%	0	-	possibly_damaging(0.64)	deleterious(0)	deleterious(0.668)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
YSK4	80122	genome.wustl.edu	37	2	135743579	135743579	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025052.3	-1	validated	p.E955*	0.061	143	0%	80	27.5%	0	-	-	-	-	NULL
YSK4	80122	genome.wustl.edu	37	2	135756553	135756553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025052.3	-1	validated	p.S110L	0.000	140	0%	77	23.4%	2	0%	benign(0.011)	tolerated(0.06)	neutral(0.323)	NULL
ZRANB3	84083	genome.wustl.edu	37	2	135965174	135965174	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032143.2	-1	provisional	p.R947*	1.000	173	0%	70	27.1%	3	33.3%	-	-	-	NULL
ZRANB3	84083	genome.wustl.edu	37	2	136107639	136107639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032143.2	-1	provisional	p.R169H	1.000	174	0.6%	166	22.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
R3HDM1	23518	genome.wustl.edu	37	2	136399194	136399194	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429703	+1	known	p.F125V	1.000	198	0%	126	29.4%	8	62.5%	-	-	-	NULL
LCT	3938	genome.wustl.edu	37	2	136587208	136587208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002299.2	-1	reviewed	p.E253D	0.096	128	0%	117	29.1%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136594115	136594115	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002299.2	-1	reviewed	p.S209R	0.000	63	0%	18	33.3%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136594312	136594312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002299.2	-1	reviewed	p.R143I	0.000	145	0%	74	29.7%	0	-	possibly_damaging(0.708)	deleterious(0.04)	deleterious(0.605)	superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136594739	136594739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002299.2	-1	reviewed	p.M1L	0.991	24	0%	11	36.4%	0	-	possibly_damaging(0.77)	deleterious(0)	deleterious(0.730)	NULL
DARS	1615	genome.wustl.edu	37	2	136673920	136673920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001349.2	-1	validated	p.V328M	1.000	129	0%	55	40%	59	38.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
CXCR4	7852	genome.wustl.edu	37	2	136873422	136873422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008540.1	-1	reviewed	p.E30K	1.000	73	0%	126	33.3%	77	14.2%	possibly_damaging(0.814)	deleterious(0)	deleterious(0.752)	superfamily_SSF81321
THSD7B	80731	genome.wustl.edu	37	2	138163337	138163337	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080427.1	+1	provisional	p.T854	0.000	48	0%	41	29.3%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
HNMT	3176	genome.wustl.edu	37	2	138738829	138738829	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024075.1	+1	reviewed	p.S78	0.010	131	0%	69	37.7%	0	-	-	-	-	NULL
HNMT	3176	genome.wustl.edu	37	2	138738926	138738926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024075.1	+1	reviewed	p.E111*	0.000	169	0%	97	26.8%	0	-	-	-	-	NULL
LOC440917	440917	genome.wustl.edu	37	2	139046193	139046193	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_041289.2	-1	model	NULL	0.999	262	0%	180	34.4%	0	-	-	-	-	-
LOC440917	440917	genome.wustl.edu	37	2	139046332	139046332	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_041289.2	-1	model	NULL	0.769	108	0%	43	34.9%	3	0%	-	-	-	-
SPOPL	339745	genome.wustl.edu	37	2	139322307	139322307	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001664.2	+1	validated	p.C289	1.000	188	0%	112	14.3%	9	0%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
LRP1B	53353	genome.wustl.edu	37	2	140995838	140995838	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000437977	-1	known	p.L713*	0.999	343	0%	80	26.3%	4	50%	benign(0)	tolerated(0.97)	-	NULL
LRP1B	53353	genome.wustl.edu	37	2	141242989	141242989	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018557.2	-1	validated	p.L3116	1.000	248	0%	108	33.3%	4	100%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141245266	141245266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018557.2	-1	validated	p.E3055*	1.000	124	0%	68	29.4%	1	0%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141458121	141458121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018557.2	-1	validated	p.R2166I	1.000	74	0%	32	21.9%	2	0%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
LRP1B	53353	genome.wustl.edu	37	2	141709478	141709478	+	Silent	SNP	G	G	A	rs187157893	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018557.2	-1	validated	p.F973	0.998	207	0%	93	29%	5	80%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP1B	53353	genome.wustl.edu	37	2	141777500	141777500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018557.2	-1	validated	p.P654L	1.000	81	0%	31	32.3%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	142012122	142012122	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018557.2	-1	validated	p.F144	0.989	342	0%	125	31.2%	0	-	-	-	-	HMMSmart_EGF,PatternScan_EGF_2,superfamily_SSF57196
KYNU	8942	genome.wustl.edu	37	2	143713807	143713807	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003937.2	+1	reviewed	p.K157N	1.000	192	0%	77	24.7%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
ARHGAP15	55843	genome.wustl.edu	37	2	144245006	144245006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018460.3	+1	validated	p.K256N	1.000	105	0%	67	22.4%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ZEB2	9839	genome.wustl.edu	37	2	145153988	145153988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014795.3	-1	reviewed	p.E1020K	1.000	127	0%	115	27%	9	0%	benign(0.313)	deleterious(0)	deleterious(0.542)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZEB2	9839	genome.wustl.edu	37	2	145154156	145154156	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014795.3	-1	reviewed	p.E964*	1.000	68	0%	70	37.1%	7	0%	-	-	-	NULL
ZEB2	9839	genome.wustl.edu	37	2	145156387	145156387	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014795.3	-1	reviewed	p.S789	0.998	230	0%	223	32.7%	3	0%	-	-	-	NULL
ACVR2A	92	genome.wustl.edu	37	2	148684829	148684829	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001616.3	+1	reviewed	p.E510*	1.000	101	0%	32	15.6%	10	30%	-	-	-	NULL
KIF5C	3800	genome.wustl.edu	37	2	149840158	149840158	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000435030	+1	known	p.E532*	1.000	115	0%	76	22.4%	1	0%	-	-	-	NULL
RBM43	375287	genome.wustl.edu	37	2	152107699	152107699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198557.2	-1	validated	p.Q265H	0.000	133	0%	119	31.1%	3	66.6%	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	NULL
RIF1	55183	genome.wustl.edu	37	2	152285384	152285384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018151.4	+1	reviewed	p.K291N	1.000	222	0%	165	33.3%	1	0%	probably_damaging(0.993)	tolerated(0.25)	deleterious(0.487)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152314404	152314404	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018151.4	+1	reviewed	p.R928*	0.994	121	0%	80	28.7%	3	66.6%	-	-	-	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152316562	152316562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018151.4	+1	reviewed	p.S1002P	0.981	76	0%	62	24.2%	1	0%	possibly_damaging(0.906)	tolerated(0.16)	neutral(0.419)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152320704	152320704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018151.4	+1	reviewed	p.S1557L	1.000	85	0%	56	35.7%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152354220	152354220	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000397336	-1	known	p.E111*	0.670	300	0%	80	45%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_NEBU
NEB	4703	genome.wustl.edu	37	2	152376270	152376270	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.E5797*	1.000	439	0%	193	16.6%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152382762	152382762	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.E5619D	1.000	116	0.9%	90	32.2%	0	-	possibly_damaging(0.924)	tolerated(0.09)	deleterious(0.669)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152385803	152385803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.R5518I	1.000	338	0%	152	39.5%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152417604	152417604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.Y4673H	1.000	307	0.3%	130	26.2%	0	-	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152425225	152425225	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.K4146N	0.975	223	0%	88	33%	0	-	probably_damaging(0.99)	tolerated(0.59)	neutral(0.446)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152473894	152473894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.R3479Q	0.081	236	0%	107	39.3%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152476200	152476200	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.I3303R	1.000	95	0%	30	30%	0	-	benign(0.13)	deleterious(0.01)	neutral(0.417)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152483686	152483686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.G3150C	1.000	223	0%	137	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nebulin
NEB	4703	genome.wustl.edu	37	2	152521090	152521090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004543.4	-1	reviewed	p.K1792N	1.000	262	0%	133	26.3%	0	-	probably_damaging(0.96)	tolerated(0.17)	neutral(0.462)	HMMPfam_Nebulin
ARL6IP6	151188	genome.wustl.edu	37	2	153616511	153616511	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_024526.1	+1	validated	NULL	0.000	36	0%	16	50%	20	25%	-	-	-	-
GALNT13	114805	genome.wustl.edu	37	2	155115644	155115644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052917.2	+1	validated	p.S323Y	1.000	214	0%	125	18.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
KCNJ3	3760	genome.wustl.edu	37	2	155555701	155555701	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002239.2	+1	reviewed	p.I138	1.000	83	0%	106	32.1%	0	-	-	-	-	HMMPfam_IRK,superfamily_SSF81324
GALNT5	11227	genome.wustl.edu	37	2	158157469	158157469	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014568.1	+1	provisional	p.V799	0.999	120	0%	57	31.6%	0	-	-	-	-	superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases
CCDC148	130940	genome.wustl.edu	37	2	159214991	159214991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138803.3	-1	validated	p.K39N	0.997	281	0.4%	260	24.2%	1	100%	unknown(0)	tolerated(0.06)	-	NULL
PKP4	8502	genome.wustl.edu	37	2	159499130	159499130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003628.3	+1	reviewed	p.M610V	1.000	229	0%	111	35.1%	59	45.7%	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
TANC1	85461	genome.wustl.edu	37	2	160085346	160085346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033394.2	+1	validated	p.E1364*	1.000	191	0%	142	14.8%	8	25%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
BAZ2B	29994	genome.wustl.edu	37	2	160193530	160193530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013450.2	-1	validated	p.R1907C	1.000	142	0%	88	39.8%	14	42.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CD302	9936	genome.wustl.edu	37	2	160637499	160637499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014880.4	-1	validated	p.M63I	1.000	135	0%	70	31.4%	4	25%	possibly_damaging(0.444)	tolerated(0.06)	neutral(0.468)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
LY75	4065	genome.wustl.edu	37	2	160661724	160661724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002349.2	-1	validated	p.Y1667C	1.000	98	0%	117	35.9%	4	0%	probably_damaging(0.994)	tolerated(0.18)	deleterious(0.508)	NULL
LY75	4065	genome.wustl.edu	37	2	160673370	160673370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002349.2	-1	validated	p.D1443Y	1.000	147	0%	122	33.6%	3	0%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
LY75	4065	genome.wustl.edu	37	2	160734844	160734844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002349.2	-1	validated	p.L589F	1.000	186	0%	66	37.9%	0	-	benign(0.231)	tolerated(0.81)	neutral(0.024)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160832723	160832723	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007366.3	-1	validated	p.L817	1.000	143	0%	64	37.5%	1	0%	-	-	-	HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160889519	160889519	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007366.3	-1	validated	p.G264	0.999	103	0%	120	28.3%	3	33.3%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
RBMS1	5937	genome.wustl.edu	37	2	161349838	161349838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016836.3	-1	reviewed	p.Y13H	1.000	43	0%	71	21.1%	12	50%	benign(0.174)	deleterious(0.02)	neutral(0.399)	NULL
TANK	10010	genome.wustl.edu	37	2	162091940	162091940	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004180.2	+1	reviewed	p.E397*	1.000	119	0%	212	28.8%	33	51.5%	-	-	-	NULL
SLC4A10	57282	genome.wustl.edu	37	2	162711547	162711547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022058.3	+1	reviewed	p.L162I	1.000	175	0%	201	35.8%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A10	57282	genome.wustl.edu	37	2	162751211	162751211	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022058.3	+1	reviewed	p.K376T	1.000	148	0%	92	17.4%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A10	57282	genome.wustl.edu	37	2	162757512	162757512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022058.3	+1	reviewed	p.R448Q	1.000	58	0%	41	19.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HCO3_cotransp
SLC4A10	57282	genome.wustl.edu	37	2	162761399	162761399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022058.3	+1	reviewed	p.K547N	1.000	291	0%	364	34.6%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_HCO3_cotransp
DPP4	1803	genome.wustl.edu	37	2	162865770	162865770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001935.3	-1	reviewed	p.R623Q	0.996	224	0%	144	27.1%	10	40%	possibly_damaging(0.931)	deleterious(0.01)	deleterious(0.783)	HMMPfam_Peptidase_S9,PatternScan_PRO_ENDOPEP_SER,superfamily_alpha/beta-Hydrolases
DPP4	1803	genome.wustl.edu	37	2	162875361	162875361	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001935.3	-1	reviewed	e16-1	1.000	97	0%	192	31.8%	0	-	-	-	-	-
DPP4	1803	genome.wustl.edu	37	2	162881411	162881411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001935.3	-1	reviewed	p.E309G	0.996	83	0%	103	31.1%	12	58.3%	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP4	1803	genome.wustl.edu	37	2	162903517	162903517	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001935.3	-1	reviewed	e4-1	1.000	82	0%	42	23.8%	0	-	-	-	-	-
FAP	2191	genome.wustl.edu	37	2	163074612	163074612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004460.2	-1	reviewed	p.P216T	1.000	97	0%	72	34.7%	6	0%	possibly_damaging(0.705)	tolerated(0.09)	deleterious(0.550)	HMMPfam_DPPIV_N,superfamily_SSF82171
FAP	2191	genome.wustl.edu	37	2	163081011	163081011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004460.2	-1	reviewed	p.R109W	0.996	106	0%	90	24.4%	2	0%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_DPPIV_N,superfamily_SSF82171
GCA	25801	genome.wustl.edu	37	2	163216060	163216060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012198.3	+1	validated	p.D209N	1.000	167	0%	49	34.7%	24	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_EF-hand
KCNH7	90134	genome.wustl.edu	37	2	163361151	163361151	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033272.2	-1	reviewed	p.I310	1.000	231	0%	85	23.5%	0	-	-	-	-	NULL
KCNH7	90134	genome.wustl.edu	37	2	163374286	163374286	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033272.2	-1	reviewed	p.F282	1.000	132	0%	54	33.3%	0	-	-	-	-	NULL
COBLL1	22837	genome.wustl.edu	37	2	165578992	165578992	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000452626	-1	known	p.E237*	0.966	131	0%	50	36%	5	60%	benign(0.007)	tolerated(0.17)	neutral(0.059)	HMMPfam_Cobl
SCN3A	6328	genome.wustl.edu	37	2	165953889	165953889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006922.3	-1	reviewed	p.N1371S	0.059	136	0%	67	26.9%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN3A	6328	genome.wustl.edu	37	2	166012313	166012313	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006922.3	-1	reviewed	p.R378*	1.000	110	0%	90	24.4%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN2A	6326	genome.wustl.edu	37	2	166170495	166170495	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	p.I420	1.000	121	0%	68	41.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166183419	166183419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	p.M692L	1.000	119	0%	88	29.5%	0	-	benign(0.019)	tolerated(0.48)	neutral(0.011)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166187839	166187839	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	e13-1	1.000	209	0%	75	30.7%	0	-	-	-	-	-
SCN2A	6326	genome.wustl.edu	37	2	166198894	166198894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	p.F826C	1.000	351	0%	305	30.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166243300	166243300	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	p.V1532	1.000	198	0%	87	25.3%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166245897	166245897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	p.F1861V	1.000	157	0%	48	41.7%	0	-	possibly_damaging(0.878)	tolerated(0.15)	deleterious(0.583)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166245993	166245993	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	p.Y1893D	1.000	151	0%	28	32.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166246017	166246017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040142.1	+1	reviewed	p.K1901Q	1.000	143	0%	33	42.4%	0	-	possibly_damaging(0.585)	tolerated(0.15)	neutral(0.443)	NULL
GALNT3	2591	genome.wustl.edu	37	2	166615931	166615931	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004482.3	-1	reviewed	p.N330H	1.000	157	0%	60	30%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
TTC21B	79809	genome.wustl.edu	37	2	166737308	166737308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024753.3	-1	validated	p.S1229F	1.000	137	0%	32	25%	12	41.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SCN1A	6323	genome.wustl.edu	37	2	166866266	166866266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006920.4	-1	reviewed	p.R1311K	1.000	179	0%	99	42.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166895980	166895980	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006920.4	-1	reviewed	p.G837*	1.000	107	0.9%	42	21.4%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN9A	6335	genome.wustl.edu	37	2	167134735	167134735	+	Missense_Mutation	SNP	A	A	C	rs182018126	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002977.3	-1	reviewed	p.F800C	1.000	136	0%	47	34%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167151116	167151116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002977.3	-1	reviewed	p.D320Y	1.000	96	0%	44	31.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167160633	167160633	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000375387	-1	known	e5-1	1.000	163	0%	106	30.2%	0	-	-	-	-	-
SCN9A	6335	genome.wustl.edu	37	2	167162338	167162338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002977.3	-1	reviewed	p.P187L	1.000	95	0%	70	45.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167284334	167284334	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002976.2	-1	validated	p.F939L	0.999	176	0%	86	27.9%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167334152	167334152	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002976.2	-1	validated	p.E19*	1.000	116	0%	62	32.3%	0	-	-	-	-	NULL
SCN7A	6332	genome.wustl.edu	37	2	167334199	167334199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002976.2	-1	validated	p.A3D	0.486	91	0%	50	36%	0	-	benign(0.397)	tolerated(0.11)	neutral(0.399)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168099253	168099253	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.E451*	1.000	91	0%	80	22.5%	0	-	-	-	-	NULL
XIRP2	129446	genome.wustl.edu	37	2	168101155	168101155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.D1085Y	1.000	52	0%	32	28.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168101526	168101526	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.S1208	0.863	75	0%	48	20.8%	0	-	-	-	-	HMMPfam_Xin
XIRP2	129446	genome.wustl.edu	37	2	168101980	168101980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.D1360Y	1.000	59	0%	31	32.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xin
XIRP2	129446	genome.wustl.edu	37	2	168102428	168102428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.I1509S	0.000	44	0%	27	33.3%	0	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168103637	168103637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.I1912S	0.653	39	0%	42	28.6%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168104479	168104479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.K2193E	0.890	28	0%	13	61.5%	0	-	benign(0.011)	deleterious(0.02)	neutral(0.384)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168106632	168106632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.F2910L	0.107	59	0%	30	43.3%	0	-	benign(0.009)	tolerated(0.45)	neutral(0.013)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168107852	168107852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.R3317Q	0.008	95	0%	29	62.1%	0	-	benign(0.402)	tolerated(0.53)	neutral(0.137)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168108050	168108050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152381.4	+1	validated	p.N3383S	0.502	99	0%	38	31.6%	0	-	benign(0.005)	tolerated(0.5)	neutral(0.010)	NULL
STK39	27347	genome.wustl.edu	37	2	168869207	168869207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013233.2	-1	reviewed	p.A479S	1.000	94	0%	56	35.7%	42	59.5%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	NULL
NOSTRIN	115677	genome.wustl.edu	37	2	169711899	169711899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039724.3	+1	validated	p.R298Q	0.976	68	0%	40	35%	0	-	possibly_damaging(0.843)	tolerated(0.08)	deleterious(0.623)	NULL
NOSTRIN	115677	genome.wustl.edu	37	2	169713243	169713243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039724.3	+1	validated	p.F336L	0.998	88	0%	89	34.8%	2	0%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
NOSTRIN	115677	genome.wustl.edu	37	2	169721449	169721449	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039724.3	+1	validated	p.S497*	0.000	158	0%	79	27.8%	1	0%	-	-	-	superfamily_SH3-domain
G6PC2	57818	genome.wustl.edu	37	2	169757922	169757922	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021176.2	+1	reviewed	p.N27K	0.816	260	0%	167	35.3%	0	-	possibly_damaging(0.78)	tolerated(0.3)	neutral(0.320)	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
ABCB11	8647	genome.wustl.edu	37	2	169781178	169781178	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003742.2	-1	reviewed	p.E1252*	1.000	110	0%	82	25.6%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB11	8647	genome.wustl.edu	37	2	169787204	169787204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003742.2	-1	reviewed	p.R1128C	1.000	69	0%	47	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB11	8647	genome.wustl.edu	37	2	169851941	169851941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003742.2	-1	reviewed	p.F177V	0.000	184	0%	80	22.5%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LRP2	4036	genome.wustl.edu	37	2	169985309	169985309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004525.2	-1	reviewed	p.A4611V	0.000	185	0.5%	101	23.8%	1	100%	benign(0)	tolerated(1)	-	NULL
LRP2	4036	genome.wustl.edu	37	2	169985569	169985569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004525.2	-1	reviewed	p.R4585Q	1.000	260	0%	99	33.3%	1	0%	possibly_damaging(0.948)	tolerated(0.16)	neutral(0.451)	NULL
LRP2	4036	genome.wustl.edu	37	2	170018981	170018981	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004525.2	-1	reviewed	e63+1	1.000	70	0%	34	38.2%	0	-	-	-	-	-
LRP2	4036	genome.wustl.edu	37	2	170026220	170026220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004525.2	-1	reviewed	p.A3830D	0.271	96	0%	60	33.3%	0	-	possibly_damaging(0.736)	tolerated(0.56)	neutral(0.276)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170129436	170129436	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004525.2	-1	reviewed	e15+1	1.000	101	0%	28	39.3%	0	-	-	-	-	-
BBS5	129880	genome.wustl.edu	37	2	170361000	170361000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152384.2	+1	reviewed	p.R312C	1.000	187	0%	431	33.6%	11	72.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF1448
C2orf77	129881	genome.wustl.edu	37	2	170531150	170531150	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085447.1	-1	validated	p.E200*	1.000	361	0%	220	33.6%	0	-	-	-	-	NULL
C2orf77	129881	genome.wustl.edu	37	2	170531481	170531481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085447.1	-1	validated	p.L122I	0.988	184	0%	162	29.6%	0	-	benign(0.035)	tolerated(1)	neutral(0.002)	NULL
KLHL23	151230	genome.wustl.edu	37	2	170598005	170598005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144711.4	+1	validated	p.D442Y	1.000	116	0%	148	39.2%	23	47.8%	possibly_damaging(0.697)	tolerated(0.09)	deleterious(0.546)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
MYO3B	140469	genome.wustl.edu	37	2	171256757	171256757	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138995.3	+1	validated	p.F617	1.000	189	0%	132	34.1%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
GAD1	2571	genome.wustl.edu	37	2	171700566	171700566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000817.2	+1	reviewed	p.E217G	1.000	371	0%	210	27.6%	25	64%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
TLK1	9874	genome.wustl.edu	37	2	171906409	171906409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012290.4	-1	validated	p.R299C	1.000	244	0%	86	34.9%	23	34.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HAT1	8520	genome.wustl.edu	37	2	172822372	172822372	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003642.3	+1	reviewed	p.F185C	1.000	241	0%	132	43.9%	81	38.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Acyl_CoA_acyltransferase,HMMPfam_Hat1_N
PDK1	5163	genome.wustl.edu	37	2	173423506	173423506	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002610.3	+1	reviewed	p.N89	1.000	182	0%	314	25.8%	5	20%	-	-	-	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
ZAK	51776	genome.wustl.edu	37	2	174062757	174062757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016653.2	+1	reviewed	p.L196I	1.000	72	0%	37	18.9%	13	23%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZAK	51776	genome.wustl.edu	37	2	174103112	174103112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016653.2	+1	reviewed	p.E405D	1.000	222	0%	109	33%	9	55.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
ZAK	51776	genome.wustl.edu	37	2	174103136	174103136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016653.2	+1	reviewed	p.N413K	0.959	223	0%	108	27.8%	3	0%	possibly_damaging(0.692)	deleterious(0.02)	deleterious(0.631)	superfamily_SAM/Pointed domain
SP3	6670	genome.wustl.edu	37	2	174783367	174783367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003111.4	-1	reviewed	p.R596W	1.000	177	0%	80	38.8%	62	46.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OLA1	29789	genome.wustl.edu	37	2	174943727	174943727	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013341.3	-1	validated	p.F353C	1.000	212	0%	78	37.2%	144	48.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_TGS-like,HMMPfam_YchF-GTPase_C
CIR1	9541	genome.wustl.edu	37	2	175245447	175245447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000414336	-1	known	p.F87C	0.995	117	0%	63	33.3%	0	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	NULL
GPR155	151556	genome.wustl.edu	37	2	175337892	175337892	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033045.2	-1	validated	p.F221V	1.000	92	0%	97	25.8%	2	50%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_Mem_trans
LOC100133109	100133109	genome.wustl.edu	37	2	175584825	175584825	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001716442.2	-1	model	p.A51	1.000	44	0%	98	31.6%	1115	0.1%	-	-	-	NULL
CHRNA1	1134	genome.wustl.edu	37	2	175612927	175612927	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039523.2	-1	reviewed	p.V458	1.000	48	0%	27	37%	2	0%	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
CHRNA1	1134	genome.wustl.edu	37	2	175613438	175613438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039523.2	-1	reviewed	p.I396T	1.000	257	0%	162	25.3%	0	-	benign(0.012)	tolerated(0.63)	neutral(0.004)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
KIAA1715	80856	genome.wustl.edu	37	2	176794849	176794849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030650.1	-1	validated	p.Q378R	0.005	324	0%	181	32.6%	5	40%	benign(0.15)	tolerated(0.28)	neutral(0.044)	NULL
KIAA1715	80856	genome.wustl.edu	37	2	176802203	176802203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030650.1	-1	validated	p.R308I	1.000	84	0%	54	44.4%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1715	80856	genome.wustl.edu	37	2	176812419	176812419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030650.1	-1	validated	p.E165D	1.000	144	0%	59	15.3%	10	20%	possibly_damaging(0.638)	tolerated(0.14)	deleterious(0.473)	NULL
EVX2	344191	genome.wustl.edu	37	2	176946920	176946920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080458.1	-1	reviewed	p.E229K	1.000	13	0%	19	36.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
HOXD12	3238	genome.wustl.edu	37	2	176964887	176964887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021193.3	+1	reviewed	p.A120T	0.202	15	0%	33	24.2%	0	-	benign(0.01)	tolerated(0.19)	neutral(0.050)	NULL
HOXD8	3234	genome.wustl.edu	37	2	176996289	176996289	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019558.2	+1	reviewed	p.K274N	1.000	59	0%	165	41.2%	1	0%	possibly_damaging(0.92)	deleterious(0.03)	deleterious(0.736)	NULL
HOXD4	3233	genome.wustl.edu	37	2	177017375	177017375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014621.2	+1	reviewed	p.R158Q	1.000	44	0%	65	24.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
HNRNPA3	220988	genome.wustl.edu	37	2	178081427	178081427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194247.2	+1	validated	p.F223V	1.000	338	0%	501	33.7%	732	52.5%	unknown(0)	tolerated(0.06)	-	superfamily_RNA-binding domain RBD
AGPS	8540	genome.wustl.edu	37	2	178364455	178364455	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003659.3	+1	reviewed	p.F491C	1.000	160	0%	94	13.8%	26	11.5%	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
TTC30A	92104	genome.wustl.edu	37	2	178482001	178482001	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152275.3	-1	validated	p.E477*	1.000	254	0%	345	27.5%	2	0%	-	-	-	superfamily_SSF48452
OSBPL6	114880	genome.wustl.edu	37	2	179257189	179257189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145739.1	+1	reviewed	p.I837V	1.000	130	0%	67	23.9%	6	0%	benign(0.372)	tolerated(0.54)	neutral(0.126)	HMMPfam_Oxysterol_BP
FKBP7	51661	genome.wustl.edu	37	2	179343185	179343185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181342.2	-1	reviewed	p.F14L	0.977	95	0%	151	23.2%	8	25%	benign(0.009)	tolerated(0.18)	neutral(0.057)	NULL
TTN	7273	genome.wustl.edu	37	2	179398193	179398193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E31813D	0.998	83	0%	26	38.5%	0	-	benign(0.34)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179403859	179403859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E30365K	1.000	248	0%	93	30.1%	1	0%	probably_damaging(0.998)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179411892	179411892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.L28884F	1.000	208	0%	61	23%	0	-	probably_damaging(0.998)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179412572	179412572	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R28691*	0.996	188	0%	93	26.9%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179412646	179412646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.D28666G	1.000	100	0%	39	28.2%	0	-	probably_damaging(0.978)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179413522	179413522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R28374H	0.999	133	0%	53	32.1%	0	-	probably_damaging(0.999)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179414075	179414075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E28190K	1.000	157	0%	98	36.7%	0	-	probably_damaging(0.978)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179423343	179423343	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.K26378T	1.000	142	0%	53	30.2%	0	-	possibly_damaging(0.754)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179425090	179425090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R26020Q	1.000	181	0%	68	29.4%	0	-	probably_damaging(0.998)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179429918	179429918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R24411W	0.395	109	0.9%	39	25.6%	0	-	probably_damaging(0.999)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179430890	179430890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.D24087Y	1.000	149	0%	65	23.1%	0	-	probably_damaging(0.991)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179431075	179431075	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.D24025A	1.000	105	0%	51	27.5%	0	-	probably_damaging(0.957)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179434801	179434801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R22783I	1.000	207	0%	84	17.9%	0	-	possibly_damaging(0.847)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179435059	179435059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.T22697N	1.000	116	0%	52	34.6%	0	-	possibly_damaging(0.922)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179435925	179435925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E22408D	1.000	87	1.1%	57	28.1%	0	-	possibly_damaging(0.77)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179436515	179436515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.D22212Y	1.000	77	0%	54	38.9%	0	-	probably_damaging(0.995)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179438145	179438145	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133378.4	-1	reviewed	p.R21670Q	0.002	95	0%	67	19.4%	2	0%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179439334	179439334	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.S21272*	0.995	129	0%	47	21.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179444876	179444876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.I19810L	0.988	126	0%	56	32.1%	0	-	benign(0.25)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179455045	179455045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.D17899E	0.880	195	0.5%	103	34%	0	-	benign(0.099)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179455848	179455848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.S17632R	1.000	122	0%	53	39.6%	0	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179465831	179465831	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.W16032*	1.000	73	0%	45	31.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179466439	179466439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.T15892A	1.000	335	0%	114	9.6%	0	-	benign(0.099)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179468802	179468802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E15636D	1.000	109	0%	46	23.9%	0	-	possibly_damaging(0.857)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179474958	179474958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.S14531A	1.000	108	0%	46	28.3%	0	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179476144	179476144	+	Missense_Mutation	SNP	C	C	T	rs72677250		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E14370K	1.000	74	1.4%	37	18.9%	0	-	benign(0.099)	-	-	HMMPfam_fn3
TTN	7273	genome.wustl.edu	37	2	179477257	179477257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.K14097N	1.000	296	0%	81	13.6%	0	-	benign(0.29)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179477764	179477764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.D13994Y	1.000	159	0.6%	49	30.6%	0	-	benign(0.127)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179495608	179495608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R12125C	1.000	189	0%	64	31.2%	0	-	possibly_damaging(0.737)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179501357	179501357	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.F11131	0.000	88	0%	30	60%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179504516	179504516	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	e171-1	1.000	295	0%	96	21.9%	0	-	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179536755	179536755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E10423K	0.000	120	0%	62	19.4%	0	-	unknown(0)	deleterious(0)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179536869	179536869	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E10385*	1.000	139	0%	94	36.2%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179559594	179559594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.S9193Y	1.000	265	0%	234	32.5%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
TTN	7273	genome.wustl.edu	37	2	179584794	179584794	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.E6615*	0.997	184	0%	63	28.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179587516	179587516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R6126S	0.997	83	0%	39	17.9%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179588272	179588272	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.I5941	1.000	177	0%	80	32.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179591897	179591897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.T5488I	0.872	95	0%	37	16.2%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179596569	179596569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356127	-1	known	p.R4434Q	0.981	85	0%	41	26.8%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179610759	179610759	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.V5456	0.956	85	0%	43	39.5%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179611061	179611061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.D5356N	0.994	60	0%	10	50%	0	-	benign(0.105)	deleterious(0)	neutral(0.453)	NULL
TTN	7273	genome.wustl.edu	37	2	179614718	179614718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.D4137Y	0.429	130	0%	44	27.3%	0	-	benign(0.187)	deleterious(0.04)	neutral(0.366)	NULL
TTN	7273	genome.wustl.edu	37	2	179615408	179615408	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.E3907*	0.016	110	0%	26	23.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179615606	179615606	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.E3841*	0.980	95	0%	44	25%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179616189	179616189	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.Q3646H	1.000	228	0%	153	33.3%	0	-	possibly_damaging(0.653)	deleterious(0.02)	deleterious(0.613)	NULL
TTN	7273	genome.wustl.edu	37	2	179638266	179638266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.R2506Q	1.000	142	0%	62	29%	0	-	benign(0.287)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179641986	179641986	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133379.3	-1	reviewed	p.K1568	1.000	263	0%	116	35.3%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
CCDC141	285025	genome.wustl.edu	37	2	179701780	179701780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173648.2	-1	provisional	p.R814Q	0.046	88	0%	24	25%	0	-	benign(0.001)	tolerated(1)	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179721095	179721095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173648.2	-1	provisional	p.K343N	1.000	146	0%	52	38.5%	0	-	probably_damaging(1)	tolerated(0.44)	deleterious(0.512)	NULL
CCDC141	285025	genome.wustl.edu	37	2	179732910	179732910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173648.2	-1	provisional	p.R231K	0.859	128	0%	52	44.2%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
CCDC141	285025	genome.wustl.edu	37	2	179742843	179742843	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173648.2	-1	provisional	p.E8*	0.017	107	0%	48	33.3%	0	-	-	-	-	NULL
ZNF385B	151126	genome.wustl.edu	37	2	180383263	180383263	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152520.4	-1	validated	p.N167H	1.000	81	0%	43	32.6%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF385B	151126	genome.wustl.edu	37	2	180634389	180634389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152520.4	-1	validated	p.L32I	1.000	94	0%	73	26%	2	50%	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	HMMSmart_SM00451
ITGA4	3676	genome.wustl.edu	37	2	182400167	182400167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000885.4	+1	reviewed	p.F1004L	1.000	114	0%	57	12.3%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Integrin_alpha,PatternScan_INTEGRIN_ALPHA
CERKL	375298	genome.wustl.edu	37	2	182423343	182423343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030311.2	-1	reviewed	p.R283Q	0.000	105	0%	25	40%	0	-	benign(0.312)	tolerated(0.34)	neutral(0.120)	HMMPfam_DAGK_cat
CERKL	375298	genome.wustl.edu	37	2	182438595	182438595	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030311.2	-1	reviewed	p.P166	0.319	167	0%	67	29.9%	0	-	-	-	-	NULL
CERKL	375298	genome.wustl.edu	37	2	182468661	182468661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030311.2	-1	reviewed	p.K128N	1.000	153	0%	154	28.6%	0	-	possibly_damaging(0.604)	tolerated(0.18)	neutral(0.266)	NULL
SSFA2	6744	genome.wustl.edu	37	2	182781023	182781023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130445.1	+1	validated	p.G886R	0.261	98	0%	80	27.5%	130	50%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
SSFA2	6744	genome.wustl.edu	37	2	182781108	182781108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130445.1	+1	validated	p.R914Q	1.000	99	0%	60	38.3%	80	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SSFA2	6744	genome.wustl.edu	37	2	182781129	182781129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130445.1	+1	validated	p.R921I	1.000	88	0%	56	32.1%	72	45.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SSFA2	6744	genome.wustl.edu	37	2	182794332	182794332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006751.5	+1	validated	p.M1240I	0.002	354	0%	376	36.4%	94	53.1%	benign(0.053)	-	-	NULL
PDE1A	5136	genome.wustl.edu	37	2	183066439	183066439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005019.3	-1	validated	p.R343I	0.986	92	0%	44	40.9%	4	25%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
PDE1A	5136	genome.wustl.edu	37	2	183088671	183088671	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005019.3	-1	validated	p.E248D	1.000	131	0%	63	30.2%	3	100%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_PDEase_I,HMMSmart_HDc,superfamily_SSF109604
DNAJC10	54431	genome.wustl.edu	37	2	183616503	183616503	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018981.1	+1	provisional	p.F475L	1.000	176	0%	58	24.1%	140	38.5%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1
DNAJC10	54431	genome.wustl.edu	37	2	183623602	183623602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018981.1	+1	provisional	p.R661I	1.000	155	0%	65	12.3%	90	8.8%	benign(0.104)	deleterious(0.03)	neutral(0.372)	superfamily_Thioredoxin-like
DNAJC10	54431	genome.wustl.edu	37	2	183627513	183627513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018981.1	+1	provisional	p.F750L	0.873	137	0%	69	14.5%	123	21.1%	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_Thioredoxin-like
FRZB	2487	genome.wustl.edu	37	2	183707234	183707234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001463.3	-1	reviewed	p.K188N	1.000	277	0%	144	27.1%	12	0%	possibly_damaging(0.719)	deleterious(0.05)	deleterious(0.606)	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
NCKAP1	10787	genome.wustl.edu	37	2	183822299	183822299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205842.1	-1	validated	p.T642N	1.000	219	0%	132	30.3%	91	36.2%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Nckap1
NCKAP1	10787	genome.wustl.edu	37	2	183832075	183832075	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205842.1	-1	validated	p.V505	0.986	147	0%	122	13.9%	42	14.2%	-	-	-	HMMPfam_Nckap1
ZNF804A	91752	genome.wustl.edu	37	2	185802001	185802001	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194250.1	+1	provisional	p.Y626	0.000	31	0%	22	22.7%	0	-	-	-	-	NULL
ZNF804A	91752	genome.wustl.edu	37	2	185802503	185802503	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194250.1	+1	provisional	p.E794*	0.689	70	0%	35	22.9%	0	-	-	-	-	NULL
FSIP2	401024	genome.wustl.edu	37	2	186672397	186672397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000424728	+1	known	p.L6122I	0.000	53	0%	16	31.2%	0	-	possibly_damaging(0.905)	tolerated(0.65)	neutral(0.362)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186672915	186672915	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000424728	+1	known	p.S6294	0.712	28	0%	16	31.2%	0	-	-	-	-	NULL
ZSWIM2	151112	genome.wustl.edu	37	2	187694533	187694533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182521.2	-1	validated	p.A339D	0.994	192	0%	57	36.8%	0	-	probably_damaging(0.983)	tolerated(0.08)	deleterious(0.729)	superfamily_SSF57850
GULP1	51454	genome.wustl.edu	37	2	189434064	189434064	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016315.2	+1	validated	p.I166	0.988	126	0%	55	30.9%	21	38%	-	-	-	NULL
COL3A1	1281	genome.wustl.edu	37	2	189856252	189856252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000090.3	+1	reviewed	p.P298S	0.998	149	0%	51	27.5%	142	0%	unknown(0)	tolerated(0.67)	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189899834	189899834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000393.3	-1	reviewed	p.M1387I	1.000	191	0%	111	25.2%	18	5.5%	benign(0.024)	-	-	HMMPfam_COLFI,HMMSmart_COLFI
COL5A2	1290	genome.wustl.edu	37	2	189901397	189901397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000393.3	-1	reviewed	p.K1353R	0.824	143	0%	62	27.4%	27	3.7%	benign(0.015)	-	-	HMMPfam_COLFI,HMMSmart_COLFI
COL5A2	1290	genome.wustl.edu	37	2	189906338	189906338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000393.3	-1	reviewed	p.G1203C	1.000	162	0%	77	31.2%	20	5%	probably_damaging(1)	-	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189932755	189932755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000393.3	-1	reviewed	p.I463L	1.000	50	0%	21	28.6%	21	0%	benign(0.113)	-	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189962013	189962013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000393.3	-1	reviewed	p.K149R	1.000	197	0%	97	30.9%	17	5.8%	unknown(0)	-	-	HMMPfam_Collagen
WDR75	84128	genome.wustl.edu	37	2	190333265	190333265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032168.1	+1	provisional	p.L565I	0.999	207	0%	87	21.8%	79	24%	possibly_damaging(0.775)	tolerated(0.19)	neutral(0.338)	HMMSmart_WD40,superfamily_WD40_like
ASNSD1	54529	genome.wustl.edu	37	2	190532496	190532496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019048.2	+1	validated	p.L491I	1.000	195	0%	280	33.9%	76	39.4%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Asn_synthase,superfamily_Adenine nucleotide alpha hydrolases-like
ANKAR	150709	genome.wustl.edu	37	2	190554523	190554523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144708.3	+1	validated	p.R220I	0.996	38	0%	29	44.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
OSGEPL1	64172	genome.wustl.edu	37	2	190618697	190618697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022353.2	-1	validated	p.R303Q	1.000	87	1.1%	82	34.1%	14	35.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Peptidase_M22,superfamily_Actin-like ATPase domain
PMS1	5378	genome.wustl.edu	37	2	190738244	190738244	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000534.4	+1	reviewed	p.Y832*	0.781	67	0%	53	39.6%	13	38.4%	-	-	-	NULL
NAB1	4664	genome.wustl.edu	37	2	191535078	191535078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005966.3	+1	validated	p.Q282H	1.000	136	0%	65	23.1%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NCD2
STAT1	6772	genome.wustl.edu	37	2	191873747	191873747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007315.3	-1	reviewed	p.S72Y	0.948	130	0%	169	24.9%	191	37.1%	possibly_damaging(0.862)	tolerated(0.08)	deleterious(0.633)	HMMPfam_STAT_int,superfamily_Transcription factor STAT-4 N-domain
OBFC2A	64859	genome.wustl.edu	37	2	192543425	192543425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031716.2	+1	validated	p.E29K	1.000	36	0%	71	26.8%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins
DNAH7	56171	genome.wustl.edu	37	2	196729466	196729466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018897.2	-1	validated	p.N2305D	1.000	224	0%	98	35.7%	0	-	benign(0.019)	tolerated(0.45)	neutral(0.013)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196741293	196741293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018897.2	-1	validated	p.F2031S	1.000	320	0%	224	33.9%	1	0%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH7	56171	genome.wustl.edu	37	2	196749416	196749416	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018897.2	-1	validated	p.R1886*	0.995	134	0%	86	40.7%	0	-	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196825023	196825023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018897.2	-1	validated	p.R951Q	1.000	88	1.1%	42	16.7%	0	-	probably_damaging(0.963)	tolerated(0.35)	neutral(0.426)	HMMPfam_DHC_N2
DNAH7	56171	genome.wustl.edu	37	2	196825608	196825608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018897.2	-1	validated	p.R756L	0.994	100	0%	64	39.1%	0	-	probably_damaging(0.998)	tolerated(0.83)	deleterious(0.475)	HMMPfam_DHC_N2
DNAH7	56171	genome.wustl.edu	37	2	196877605	196877605	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018897.2	-1	validated	p.E299*	1.000	107	0.9%	33	15.2%	0	-	-	-	-	NULL
HECW2	57520	genome.wustl.edu	37	2	197105187	197105187	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020760.1	-1	provisional	p.F1250	0.977	159	0%	96	24%	1	0%	-	-	-	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197184518	197184518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020760.1	-1	provisional	p.V366L	0.000	60	0%	47	19.1%	0	-	possibly_damaging(0.465)	deleterious(0.01)	deleterious(0.558)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197521765	197521765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080539.1	+1	provisional	p.R161C	1.000	85	0%	42	23.8%	4	75%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197583239	197583239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080539.1	+1	provisional	p.L627I	1.000	96	0%	57	22.8%	3	66.6%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197584294	197584294	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080539.1	+1	provisional	p.V690G	1.000	190	0%	64	31.2%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
CCDC150	284992	genome.wustl.edu	37	2	197586363	197586363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080539.1	+1	provisional	p.Q793K	0.986	90	0%	63	31.7%	9	55.5%	possibly_damaging(0.891)	tolerated(0.79)	neutral(0.351)	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197654675	197654675	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012086.2	-1	provisional	p.E219*	1.000	153	0%	86	36%	19	5.2%	-	-	-	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_Protein prenylyltransferase
PGAP1	80055	genome.wustl.edu	37	2	197710714	197710714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024989.3	-1	validated	p.K726N	0.796	115	0%	58	34.5%	32	40.6%	benign(0.344)	tolerated(0.23)	neutral(0.150)	NULL
ANKRD44	91526	genome.wustl.edu	37	2	197863762	197863762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153697.1	-1	provisional	p.A820V	1.000	76	0%	57	33.3%	5	80%	benign(0.354)	tolerated(1)	neutral(0.112)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD44	91526	genome.wustl.edu	37	2	197953515	197953515	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000424317	-1	known	p.E204	1.000	103	0%	52	23.1%	2	50%	-	-	-	superfamily_Ankyrin repeat
SF3B1	23451	genome.wustl.edu	37	2	198265007	198265007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012433.2	-1	reviewed	p.R957Q	1.000	131	0%	55	25.5%	299	39.7%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_HEAT,superfamily_ARM repeat
HSPD1	3329	genome.wustl.edu	37	2	198351846	198351846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002156.4	-1	reviewed	p.I549S	1.000	65	0%	49	38.8%	223	38.5%	benign(0.043)	tolerated(0.43)	neutral(0.016)	HMMPfam_Cpn60_TCP1
MOB4	25843	genome.wustl.edu	37	2	198415026	198415026	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015387.3	+1	reviewed	p.A154	1.000	328	0%	173	28.9%	50	42%	-	-	-	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein
RFTN2	130132	genome.wustl.edu	37	2	198480650	198480650	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000414909	-1	known	e3-1	0.996	119	0%	178	28.1%	1	0%	-	-	-	-
RFTN2	130132	genome.wustl.edu	37	2	198495919	198495919	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144629.2	-1	validated	p.V248	0.998	78	0%	88	27.3%	0	-	-	-	-	NULL
PLCL1	5334	genome.wustl.edu	37	2	198948734	198948734	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006226.3	+1	validated	p.E67*	1.000	164	0%	62	30.6%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PLCL1	5334	genome.wustl.edu	37	2	198949349	198949349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006226.3	+1	validated	p.G272W	1.000	47	0%	44	11.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_efhand_like,superfamily_SSF47473
PLCL1	5334	genome.wustl.edu	37	2	198950106	198950106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006226.3	+1	validated	p.R524H	1.000	68	0%	26	53.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
PLCL1	5334	genome.wustl.edu	37	2	198950117	198950117	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006226.3	+1	validated	p.E528*	1.000	71	0%	24	29.2%	0	-	-	-	-	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
C2orf69	205327	genome.wustl.edu	37	2	200790465	200790465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153689.5	+1	validated	p.D338E	1.000	78	0%	63	46%	13	38.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UPF0565
TYW5	129450	genome.wustl.edu	37	2	200803696	200803696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039693.2	-1	validated	p.R149Q	1.000	163	0%	121	30.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
SPATS2L	26010	genome.wustl.edu	37	2	201281125	201281125	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100422.1	+1	validated	p.E58*	1.000	203	0%	115	36.5%	22	13.6%	-	-	-	NULL
SPATS2L	26010	genome.wustl.edu	37	2	201332102	201332102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100422.1	+1	validated	p.E313K	1.000	30	0%	24	25%	57	17.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_DUF1387
SGOL2	151246	genome.wustl.edu	37	2	201399861	201399861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152524.5	+1	validated	p.E92D	1.000	64	0%	48	22.9%	4	75%	possibly_damaging(0.94)	tolerated(0.17)	neutral(0.444)	HMMPfam_Shugoshin_N
SGOL2	151246	genome.wustl.edu	37	2	201436223	201436223	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152524.5	+1	validated	p.K385I	0.702	40	0%	25	44%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201437221	201437221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152524.5	+1	validated	p.R718W	0.944	50	0%	38	18.4%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SGOL2	151246	genome.wustl.edu	37	2	201438555	201438555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152524.5	+1	validated	p.L1162F	0.002	177	0%	120	32.5%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AOX1	316	genome.wustl.edu	37	2	201531411	201531411	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001159.3	+1	reviewed	p.N1182T	0.998	58	0%	47	21.3%	7	0%	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain
BZW1	9689	genome.wustl.edu	37	2	201683507	201683507	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014670.2	+1	validated	p.K283N	1.000	127	0%	171	32.2%	70	45.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_W2,superfamily_ARM-type_fold
CLK1	1195	genome.wustl.edu	37	2	201722492	201722492	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004071.3	-1	reviewed	p.R261*	1.000	96	0%	122	32%	67	34.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CFLAR	8837	genome.wustl.edu	37	2	202028696	202028696	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127183.1	+1	validated	p.*481	0.456	92	0%	196	14.8%	22	22.7%	-	-	-	NULL
CASP10	843	genome.wustl.edu	37	2	202050566	202050566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032977.3	+1	reviewed	p.E22D	0.001	37	0%	28	35.7%	1	0%	benign(0.242)	tolerated(0.54)	neutral(0.032)	HMMPfam_DED,HMMSmart_DED,superfamily_DEATH_like
CASP8	841	genome.wustl.edu	37	2	202137360	202137360	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000444430	+1	known	p.E1*	0.988	148	0%	62	32.3%	0	-	-	-	-	NULL
ALS2CR12	130540	genome.wustl.edu	37	2	202213016	202213016	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139163.2	-1	validated	p.I65	0.001	112	0%	105	34.3%	1	100%	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202352463	202352463	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152525.5	-1	validated	p.R582*	0.000	326	0%	206	35.4%	0	-	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202357904	202357904	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000439140	-1	known	p.N1054H	0.000	55	0%	59	33.9%	0	-	possibly_damaging(0.496)	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202358438	202358438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000439140	-1	known	p.E876*	0.000	120	0%	103	33%	0	-	-	-	-	NULL
ALS2CR11	151254	genome.wustl.edu	37	2	202358824	202358824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000439140	-1	known	p.T747I	0.017	95	0%	72	29.2%	0	-	benign(0)	-	-	NULL
TMEM237	65062	genome.wustl.edu	37	2	202501491	202501491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001044385.1	-1	validated	p.K85T	1.000	99	0%	153	36.6%	17	58.8%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
MPP4	58538	genome.wustl.edu	37	2	202509940	202509940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033066.2	-1	reviewed	p.S636F	0.660	42	0%	76	30.3%	2	50%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
MPP4	58538	genome.wustl.edu	37	2	202514862	202514862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033066.2	-1	reviewed	p.E470K	1.000	182	0%	231	31.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ALS2	57679	genome.wustl.edu	37	2	202622163	202622163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020919.3	-1	reviewed	p.G478D	0.996	287	0%	175	34.3%	4	25%	benign(0.308)	deleterious(0.02)	deleterious(0.479)	NULL
CDK15	65061	genome.wustl.edu	37	2	202698648	202698648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139158.1	+1	provisional	p.Q177H	1.000	185	0%	119	31.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FZD7	8324	genome.wustl.edu	37	2	202900783	202900783	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003507.1	+1	reviewed	p.I471	0.999	37	0%	50	32%	18	50%	-	-	-	HMMPfam_Frizzled
NOP58	51602	genome.wustl.edu	37	2	203157506	203157506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015934.3	+1	provisional	p.E263*	1.000	162	0%	157	35.7%	34	29.4%	-	-	-	HMMPfam_Nop,superfamily_SSF89124
NOP58	51602	genome.wustl.edu	37	2	203160419	203160419	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015934.3	+1	provisional	p.K310	1.000	122	0%	113	25.7%	32	62.5%	-	-	-	HMMPfam_Nop,superfamily_SSF89124
ALS2CR8	79800	genome.wustl.edu	37	2	203834657	203834657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001104586.1	+1	validated	p.K323N	1.000	127	0%	77	41.6%	1	100%	probably_damaging(0.971)	tolerated(0.1)	deleterious(0.700)	NULL
ALS2CR8	79800	genome.wustl.edu	37	2	203847107	203847107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001104586.1	+1	validated	p.L668M	1.000	137	0%	78	11.5%	0	-	possibly_damaging(0.866)	deleterious(0)	deleterious(0.780)	NULL
NBEAL1	65065	genome.wustl.edu	37	2	204073435	204073435	+	Missense_Mutation	SNP	G	G	A	rs182855092	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114132.1	+1	validated	p.G2499S	0.456	123	0%	266	29.3%	4	25%	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NBEAL1	65065	genome.wustl.edu	37	2	204075790	204075790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114132.1	+1	validated	p.G2603D	1.000	100	0%	134	35.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
ABI2	10152	genome.wustl.edu	37	2	204267324	204267324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005759.4	+1	validated	p.M286I	1.000	129	0%	105	32.4%	81	45.6%	-	-	-	NULL
ICOS	29851	genome.wustl.edu	37	2	204801565	204801565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012092.3	+1	reviewed	p.L10I	0.996	268	0%	154	27.9%	0	-	possibly_damaging(0.567)	tolerated(0.17)	neutral(0.253)	NULL
PARD3B	117583	genome.wustl.edu	37	2	206041173	206041173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152526.4	+1	validated	p.P537H	0.002	109	0%	74	32.4%	6	66.6%	benign(0.186)	tolerated(0.36)	neutral(0.038)	NULL
NRP2	8828	genome.wustl.edu	37	2	206617599	206617599	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201266.1	+1	reviewed	p.F648	0.990	78	0%	80	33.8%	15	33.3%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
NRP2	8828	genome.wustl.edu	37	2	206630258	206630258	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201266.1	+1	reviewed	p.R790	1.000	225	0%	347	36.3%	29	31%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
NRP2	8828	genome.wustl.edu	37	2	206657000	206657000	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201266.1	+1	reviewed	p.E828*	1.000	304	0%	263	33.1%	12	33.3%	-	-	-	NULL
NDUFS1	4719	genome.wustl.edu	37	2	207017232	207017232	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005006.5	-1	reviewed	p.R22*	0.990	65	0%	65	29.2%	23	30.4%	-	-	-	NULL
GPR1	2825	genome.wustl.edu	37	2	207041089	207041089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098199.1	-1	validated	p.L295F	1.000	102	0%	91	31.9%	0	-	benign(0.009)	tolerated(0.22)	neutral(0.043)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZDBF2	57683	genome.wustl.edu	37	2	207169586	207169586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020923.1	+1	validated	p.E112K	0.000	142	0%	67	37.3%	0	-	benign(0.108)	tolerated(0.63)	neutral(0.012)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207169693	207169693	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020923.1	+1	validated	p.Q147	0.006	132	0%	66	37.9%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207173411	207173411	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020923.1	+1	validated	p.E1387*	0.020	66	0%	24	29.2%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207173930	207173930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020923.1	+1	validated	p.I1560V	0.000	65	0%	29	20.7%	0	-	benign(0.061)	tolerated(0.96)	neutral(0.004)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207174862	207174862	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020923.1	+1	validated	p.S1870	0.000	93	1.1%	53	39.6%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175879	207175879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020923.1	+1	validated	p.E2209D	0.868	61	0%	40	47.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ADAM23	8745	genome.wustl.edu	37	2	207424793	207424793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003812.2	+1	reviewed	p.K374E	1.000	73	0%	49	38.8%	1	100%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM23	8745	genome.wustl.edu	37	2	207426962	207426962	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003812.2	+1	reviewed	p.S430	0.825	81	0%	74	27%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM23	8745	genome.wustl.edu	37	2	207429760	207429760	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003812.2	+1	reviewed	p.E454D	0.987	353	0%	268	23.5%	0	-	benign(0.001)	tolerated(1)	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
DYTN	391475	genome.wustl.edu	37	2	207527721	207527721	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093730.1	-1	provisional	p.G513	0.000	313	0%	203	10.8%	0	-	-	-	-	NULL
MDH1B	130752	genome.wustl.edu	37	2	207603231	207603231	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039845.1	-1	validated	p.F511L	0.094	225	0%	85	30.6%	3	66.6%	benign(0.001)	-	-	NULL
MDH1B	130752	genome.wustl.edu	37	2	207625679	207625679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039845.1	-1	validated	p.K27N	1.000	195	0%	134	11.9%	0	-	benign(0.069)	tolerated(0.42)	neutral(0.018)	NULL
CPO	130749	genome.wustl.edu	37	2	207833952	207833952	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173077.2	+1	validated	p.S306*	0.994	208	0%	89	30.3%	1	100%	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_Zn_pept,superfamily_SSF53187
CRYGB	1419	genome.wustl.edu	37	2	209007490	209007490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005210.3	-1	validated	p.L134I	0.451	69	0%	48	25%	0	-	benign(0.213)	tolerated(0.08)	neutral(0.321)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
PIKFYVE	200576	genome.wustl.edu	37	2	209190723	209190723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015040.3	+1	reviewed	p.R1063Q	0.990	89	1.1%	33	15.2%	5	0%	possibly_damaging(0.902)	tolerated(0.3)	neutral(0.386)	NULL
PTH2R	5746	genome.wustl.edu	37	2	209302497	209302497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005048.2	+1	reviewed	p.R101Q	1.000	127	0%	80	20%	12	58.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HRM,HMMSmart_HormR,superfamily_SSF111418
MAP2	4133	genome.wustl.edu	37	2	210559484	210559484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002374.3	+1	reviewed	p.L864I	0.972	55	0%	19	21.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210559555	210559555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002374.3	+1	reviewed	p.E887D	1.000	73	1.4%	27	48.1%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210560570	210560570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002374.3	+1	reviewed	p.V1226I	0.000	116	0%	43	18.6%	0	-	benign(0.151)	tolerated(0.23)	neutral(0.055)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210561748	210561748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002374.3	+1	reviewed	p.L1499F	1.000	104	0%	62	30.6%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_MAP2_projctn
MAP2	4133	genome.wustl.edu	37	2	210570310	210570310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002374.3	+1	reviewed	p.V1531L	0.577	91	0%	47	31.9%	2	0%	benign(0.104)	tolerated(0.07)	neutral(0.327)	NULL
MAP2	4133	genome.wustl.edu	37	2	210574734	210574734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002374.3	+1	reviewed	p.S1610Y	1.000	94	0%	55	14.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP2	4133	genome.wustl.edu	37	2	210574837	210574837	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002374.3	+1	reviewed	p.V1644	0.457	88	0%	73	35.6%	0	-	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210683818	210683818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032504.1	+1	validated	p.L599F	1.000	96	0%	56	32.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
UNC80	285175	genome.wustl.edu	37	2	210685221	210685221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032504.1	+1	validated	p.Q717K	1.000	114	0%	132	26.5%	0	-	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	NULL
UNC80	285175	genome.wustl.edu	37	2	210698823	210698823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032504.1	+1	validated	p.A958V	1.000	128	0%	80	31.2%	0	-	probably_damaging(0.98)	tolerated(0.27)	neutral(0.458)	NULL
UNC80	285175	genome.wustl.edu	37	2	210777331	210777331	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032504.1	+1	validated	p.V1544	1.000	73	0%	55	20%	0	-	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210818931	210818931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032504.1	+1	validated	p.A2399V	1.000	101	0%	70	42.9%	0	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
UNC80	285175	genome.wustl.edu	37	2	210858961	210858961	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032504.1	+1	validated	p.A3161	0.998	29	0%	23	26.1%	0	-	-	-	-	NULL
MYL1	4632	genome.wustl.edu	37	2	211163270	211163270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_079420.2	-1	reviewed	p.L60I	1.000	87	0%	66	36.4%	0	-	benign(0.005)	tolerated(0.15)	neutral(0.241)	HMMSmart_SM00054,superfamily_EF-hand
CPS1	1373	genome.wustl.edu	37	2	211460265	211460265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122633.1	+1	reviewed	p.E446*	1.000	201	0%	82	30.5%	0	-	-	-	-	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain
CPS1	1373	genome.wustl.edu	37	2	211469886	211469886	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122633.1	+1	reviewed	p.E639*	1.000	174	0%	78	30.8%	0	-	-	-	-	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
SPAG16	79582	genome.wustl.edu	37	2	214161993	214161993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024532.3	+1	validated	p.D64G	1.000	116	0%	87	31%	25	64%	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	superfamily_WD40 repeat-like
SPAG16	79582	genome.wustl.edu	37	2	214174825	214174825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024532.3	+1	validated	p.V108L	1.000	209	0%	90	33.3%	18	44.4%	benign(0.015)	tolerated(0.24)	neutral(0.038)	superfamily_WD40 repeat-like
ABCA12	26154	genome.wustl.edu	37	2	215866294	215866294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173076.2	-1	reviewed	p.E951K	1.000	230	0%	119	30.3%	0	-	benign(0.002)	tolerated(0.71)	neutral(0.002)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215928927	215928927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173076.2	-1	reviewed	p.R60Q	1.000	190	0%	50	56%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
FN1	2335	genome.wustl.edu	37	2	216232745	216232745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_212482.1	-1	reviewed	p.E2287K	0.828	75	0%	73	27.4%	421	1.4%	benign(0.026)	tolerated(0.09)	neutral(0.297)	superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216269379	216269379	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_212482.1	-1	reviewed	e20-1	1.000	57	0%	29	20.7%	0	-	-	-	-	-
FN1	2335	genome.wustl.edu	37	2	216290005	216290005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_212482.1	-1	reviewed	p.S283Y	0.779	59	0%	33	30.3%	75	0%	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	NULL
PECR	55825	genome.wustl.edu	37	2	216930193	216930193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018441.5	-1	validated	p.N89T	0.935	76	0%	38	18.4%	5	40%	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
RUFY4	285180	genome.wustl.edu	37	2	218938577	218938577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198483.3	+1	validated	p.R17I	0.903	97	0%	118	30.5%	5	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
RUFY4	285180	genome.wustl.edu	37	2	218954047	218954047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198483.3	+1	validated	p.S352R	0.978	101	0%	78	34.6%	3	33.3%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger
CXCR2	3579	genome.wustl.edu	37	2	218999758	218999758	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001557.3	+1	reviewed	p.V78	0.000	155	0%	126	31.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CXCR2	3579	genome.wustl.edu	37	2	219000509	219000509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001557.3	+1	reviewed	p.L329I	0.998	85	0%	82	28%	0	-	possibly_damaging(0.821)	deleterious(0.03)	deleterious(0.675)	superfamily_Family A G protein-coupled receptor-like
TMBIM1	64114	genome.wustl.edu	37	2	219143252	219143252	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022152.4	-1	validated	p.C153*	1.000	72	0%	135	28.9%	55	0%	-	-	-	HMMPfam_UPF0005
VIL1	7429	genome.wustl.edu	37	2	219294100	219294100	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007127.2	+1	reviewed	p.P220	0.005	43	2.3%	40	30%	1	100%	-	-	-	HMMSmart_GEL,HMMPfam_Gelsolin
VIL1	7429	genome.wustl.edu	37	2	219294633	219294633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007127.2	+1	reviewed	p.N304T	0.054	81	0%	100	24%	1	0%	benign(0)	tolerated(0.78)	neutral(0.001)	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF82754
VIL1	7429	genome.wustl.edu	37	2	219313964	219313964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007127.2	+1	reviewed	p.D797Y	1.000	107	0%	58	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VHP,HMMSmart_VHP,superfamily_VHP
USP37	57695	genome.wustl.edu	37	2	219410944	219410944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020935.2	-1	validated	p.S227L	1.000	213	0%	171	19.3%	3	0%	benign(0.3)	tolerated(0.15)	neutral(0.334)	NULL
PLCD4	84812	genome.wustl.edu	37	2	219501065	219501065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032726.2	+1	provisional	p.R711Q	1.000	226	0%	231	40.7%	8	37.5%	benign(0.315)	tolerated(0.19)	neutral(0.148)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
BCS1L	617	genome.wustl.edu	37	2	219526239	219526239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079866.1	+1	reviewed	p.R144Q	1.000	130	0%	171	28.1%	40	40%	possibly_damaging(0.843)	deleterious(0.05)	deleterious(0.668)	HMMPfam_BCS1_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TTLL4	9654	genome.wustl.edu	37	2	219604833	219604833	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014640.4	+1	validated	p.E514*	0.998	159	0%	130	36.2%	3	66.6%	-	-	-	NULL
FEV	54738	genome.wustl.edu	37	2	219846739	219846739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017521.2	-1	reviewed	p.A123T	1.000	26	0%	55	40%	0	-	possibly_damaging(0.494)	deleterious(0.01)	deleterious(0.570)	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
FEV	54738	genome.wustl.edu	37	2	219846968	219846968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017521.2	-1	reviewed	p.Q46H	1.000	15	0%	34	32.4%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
CCDC108	255101	genome.wustl.edu	37	2	219878261	219878261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194302.2	-1	provisional	p.S1276P	1.000	52	0%	46	28.3%	0	-	probably_damaging(0.997)	tolerated(0.13)	deleterious(0.719)	NULL
NHEJ1	79840	genome.wustl.edu	37	2	220022258	220022258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024782.2	-1	reviewed	p.R109Q	1.000	78	0%	135	32.6%	19	21%	benign(0.253)	tolerated(0.19)	neutral(0.075)	HMMPfam_XLF
DES	1674	genome.wustl.edu	37	2	220286102	220286102	+	Missense_Mutation	SNP	G	G	A	rs61368398		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001927.3	+1	reviewed	p.R355Q	1.000	35	0%	67	28.4%	0	-	possibly_damaging(0.522)	tolerated(0.17)	neutral(0.235)	HMMPfam_Filament
SPEG	10290	genome.wustl.edu	37	2	220332072	220332072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005876.4	+1	validated	p.D1020N	1.000	37	0%	80	28.7%	0	-	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SPEG	10290	genome.wustl.edu	37	2	220337798	220337798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005876.4	+1	validated	p.P1376H	0.995	28	0%	38	23.7%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	superfamily_Fibronectin type III
SPEG	10290	genome.wustl.edu	37	2	220342136	220342136	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005876.4	+1	validated	p.V1566	0.525	34	0%	68	36.8%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CHPF	79586	genome.wustl.edu	37	2	220405063	220405063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024536.5	-1	validated	p.P457L	0.999	29	0%	58	34.5%	177	50.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CHGN
OBSL1	23363	genome.wustl.edu	37	2	220420944	220420944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015311.2	-1	reviewed	p.E1469D	0.995	24	0%	63	34.9%	49	46.9%	possibly_damaging(0.712)	tolerated(0.2)	neutral(0.306)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
OBSL1	23363	genome.wustl.edu	37	2	220423079	220423079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015311.2	-1	reviewed	p.S1110Y	0.957	15	0%	24	33.3%	27	55.5%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
FARSB	10056	genome.wustl.edu	37	2	223507698	223507698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005687.3	-1	reviewed	p.K47N	0.999	124	0%	68	27.9%	19	57.8%	benign(0.038)	tolerated(0.14)	neutral(0.252)	superfamily_Putative DNA-binding domain
SERPINE2	5270	genome.wustl.edu	37	2	224856584	224856584	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136530.1	-1	validated	p.F219	0.053	108	0%	45	31.1%	169	31.9%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
DOCK10	55619	genome.wustl.edu	37	2	225670000	225670000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014689.2	-1	validated	p.R1325Q	1.000	149	0%	47	31.9%	2	0%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
DOCK10	55619	genome.wustl.edu	37	2	225739030	225739030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014689.2	-1	validated	p.R352*	1.000	123	0%	83	27.7%	3	0%	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225739453	225739453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014689.2	-1	validated	p.S316Y	0.614	184	0%	81	37%	2	0%	benign(0.159)	deleterious(0.05)	neutral(0.359)	NULL
IRS1	3667	genome.wustl.edu	37	2	227662704	227662704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005544.2	-1	reviewed	p.E251K	1.000	45	0%	88	29.5%	28	32.1%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
COL4A3	1285	genome.wustl.edu	37	2	228149011	228149011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000091.3	+1	reviewed	p.P944H	0.196	92	0%	68	14.7%	0	-	unknown(0)	tolerated(0.3)	-	NULL
AGFG1	3267	genome.wustl.edu	37	2	228401659	228401659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135187.1	+1	reviewed	p.S467F	1.000	160	0%	82	35.4%	88	39.7%	benign(0.229)	deleterious(0.04)	neutral(0.372)	NULL
SLC19A3	80704	genome.wustl.edu	37	2	228563629	228563629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025243.3	-1	reviewed	p.D268Y	0.996	157	0%	67	40.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
SLC19A3	80704	genome.wustl.edu	37	2	228563888	228563888	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025243.3	-1	reviewed	p.S181	0.000	140	0%	86	33.7%	0	-	-	-	-	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
SPHKAP	80309	genome.wustl.edu	37	2	228884567	228884567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142644.1	-1	validated	p.S335P	0.005	244	0%	110	32.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228973549	228973549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142644.1	-1	validated	p.S82Y	1.000	47	0%	32	40.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228973649	228973649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142644.1	-1	validated	p.R49C	0.987	58	0%	33	39.4%	0	-	benign(0.078)	tolerated(0.22)	neutral(0.048)	NULL
DNER	92737	genome.wustl.edu	37	2	230253035	230253035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139072.3	-1	validated	p.N601D	1.000	94	0%	18	33.3%	0	-	possibly_damaging(0.822)	tolerated(0.18)	neutral(0.367)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_CA,superfamily_SSF57196
TRIP12	9320	genome.wustl.edu	37	2	230656767	230656767	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004238.1	-1	provisional	p.L1335	1.000	206	0%	105	25.7%	77	50.6%	-	-	-	NULL
TRIP12	9320	genome.wustl.edu	37	2	230662423	230662423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004238.1	-1	provisional	p.E1128K	0.996	197	0%	174	36.2%	48	41.6%	benign(0.087)	tolerated(0.96)	neutral(0.006)	NULL
SLC16A14	151473	genome.wustl.edu	37	2	230902145	230902145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152527.4	-1	validated	p.R495Q	0.251	129	0%	83	27.7%	4	0%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
SLC16A14	151473	genome.wustl.edu	37	2	230910875	230910875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152527.4	-1	validated	p.A323T	1.000	60	0%	59	39%	5	20%	probably_damaging(0.958)	tolerated(0.52)	neutral(0.410)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC16A14	151473	genome.wustl.edu	37	2	230911017	230911017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152527.4	-1	validated	p.K275N	0.000	87	0%	66	19.7%	1	0%	benign(0.005)	tolerated(0.66)	neutral(0.003)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SP110	3431	genome.wustl.edu	37	2	231036818	231036818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080424.2	-1	reviewed	p.K593N	0.004	100	0%	63	33.3%	1	0%	possibly_damaging(0.467)	deleterious(0)	deleterious(0.598)	superfamily_Bromodomain
SP140L	93349	genome.wustl.edu	37	2	231222653	231222653	+	Missense_Mutation	SNP	C	C	T	rs189762003	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138402.4	+1	provisional	p.R81W	0.011	103	0%	70	42.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sp100
SP140L	93349	genome.wustl.edu	37	2	231236364	231236364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138402.4	+1	provisional	p.R212I	0.189	157	0%	76	39.5%	5	60%	unknown(0)	-	-	NULL
SP100	6672	genome.wustl.edu	37	2	231406724	231406724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080391.1	+1	validated	p.F841V	0.927	111	0%	54	11.1%	3	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
ENSG00000199791	0	genome.wustl.edu	37	2	231451846	231451846	+	RNA	SNP	C	C	T	rs192435111	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000362921	+1	novel	NULL	0.000	16	0%	15	26.7%	0	-	-	-	-	-
ITM2C	81618	genome.wustl.edu	37	2	231738196	231738196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030926.4	+1	validated	p.S62L	0.989	42	0%	92	38%	862	35.1%	benign(0.271)	tolerated(0.15)	neutral(0.270)	NULL
PSMD1	5707	genome.wustl.edu	37	2	231948461	231948461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002807.2	+1	reviewed	p.S569Y	1.000	154	0%	77	29.9%	135	45.1%	possibly_damaging(0.796)	tolerated(0.09)	deleterious(0.595)	superfamily_ARM repeat
HTR2B	3357	genome.wustl.edu	37	2	231973630	231973630	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000867.4	-1	validated	p.L349	0.065	143	0%	58	36.2%	3	33.3%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PSMD1	5707	genome.wustl.edu	37	2	232035293	232035293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002807.2	+1	reviewed	p.G910D	1.000	119	0%	57	17.5%	172	19.1%	benign(0.055)	deleterious(0.02)	neutral(0.387)	NULL
ARMC9	80210	genome.wustl.edu	37	2	232100066	232100066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025139.3	+1	validated	p.S251F	1.000	131	0%	78	32.1%	11	27.2%	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	superfamily_ARM-type_fold
LINC00471	151477	genome.wustl.edu	37	2	232374014	232374014	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_024079.1	-1	predicted	NULL	0.000	237	0.4%	289	30.4%	1	100%	-	-	-	-
C2orf57	165100	genome.wustl.edu	37	2	232458412	232458412	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152614.2	+1	validated	p.H250	0.000	55	0%	102	32.4%	0	-	-	-	-	NULL
ALPI	248	genome.wustl.edu	37	2	233323702	233323702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001631.3	+1	reviewed	p.A478V	1.000	16	0%	47	21.3%	0	-	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	HMMPfam_Alk_phosphatase,HMMSmart_SM00098,superfamily_Alkaline phosphatase-like
TIGD1	200765	genome.wustl.edu	37	2	233413850	233413850	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145702.1	-1	validated	p.K248T	0.991	33	0%	85	35.3%	9	66.6%	unknown(0)	tolerated(0.13)	-	HMMPfam_DDE
TIGD1	200765	genome.wustl.edu	37	2	233414380	233414380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145702.1	-1	validated	p.M71I	0.991	36	0%	113	38.1%	9	44.4%	unknown(0)	tolerated(0.5)	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233660867	233660867	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103147.1	+1	reviewed	p.S546	0.000	170	0.6%	75	30.7%	6	0%	-	-	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233681677	233681677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103147.1	+1	reviewed	p.L790I	1.000	117	0%	82	39%	19	26.3%	unknown(0)	deleterious(0.03)	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233712090	233712090	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103147.1	+1	reviewed	p.E1186*	1.000	151	0%	183	30.1%	13	30.7%	-	-	-	NULL
NGEF	25791	genome.wustl.edu	37	2	233839357	233839357	+	Missense_Mutation	SNP	C	C	T	rs142598950	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019850.2	-1	validated	p.E82K	0.000	321	0%	262	34.4%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
SAG	6295	genome.wustl.edu	37	2	234243644	234243644	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000541.4	+1	reviewed	p.T281	0.002	74	0%	84	31%	0	-	-	-	-	HMMPfam_Arrestin_C,superfamily_Ig_E-set
SAG	6295	genome.wustl.edu	37	2	234255459	234255459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000541.4	+1	reviewed	p.Q373H	0.859	203	0%	226	32.3%	0	-	possibly_damaging(0.848)	tolerated(0.11)	deleterious(0.597)	superfamily_Ig_E-set
SAG	6295	genome.wustl.edu	37	2	234255476	234255476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000541.4	+1	reviewed	p.F379C	1.000	195	0%	236	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ig_E-set
USP40	55230	genome.wustl.edu	37	2	234394246	234394246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018218.2	-1	validated	p.K1156N	1.000	99	0%	119	33.6%	7	42.8%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
USP40	55230	genome.wustl.edu	37	2	234399842	234399842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018218.2	-1	validated	p.D1006Y	0.895	50	0%	34	41.2%	6	33.3%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
USP40	55230	genome.wustl.edu	37	2	234438155	234438155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018218.2	-1	validated	p.R503Q	0.307	197	0%	69	36.2%	2	100%	benign(0.026)	tolerated(0.24)	neutral(0.038)	superfamily_Cysteine proteinases
USP40	55230	genome.wustl.edu	37	2	234463172	234463172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018218.2	-1	validated	p.E195K	1.000	140	0%	57	26.3%	3	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UCH,superfamily_Cysteine proteinases
UGT1A10	54575	genome.wustl.edu	37	2	234545316	234545316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019075.2	+1	reviewed	p.L50I	0.057	96	0%	45	24.4%	0	-	possibly_damaging(0.675)	tolerated(0.16)	neutral(0.299)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A7	54577	genome.wustl.edu	37	2	234590938	234590938	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019077.2	+1	reviewed	p.L119V	0.000	275	0%	85	10.6%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
HJURP	55355	genome.wustl.edu	37	2	234749577	234749577	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018410.3	-1	validated	p.R617*	0.000	133	0%	118	36.4%	18	27.7%	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234839375	234839375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024080.4	+1	validated	p.D60E	0.784	142	0%	128	31.2%	0	-	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	NULL
SPP2	6694	genome.wustl.edu	37	2	234975909	234975909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006944.2	+1	reviewed	p.R181W	0.000	198	0%	131	12.2%	0	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	HMMPfam_Spp-24
SH3BP4	23677	genome.wustl.edu	37	2	235951000	235951000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014521.2	+1	reviewed	p.F529	0.370	81	0%	110	30%	55	40%	-	-	-	NULL
IQCA1	79781	genome.wustl.edu	37	2	237396720	237396720	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024726.3	-1	provisional	p.E191*	0.743	120	0%	224	27.7%	0	-	-	-	-	NULL
IQCA1	79781	genome.wustl.edu	37	2	237405979	237405979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024726.3	-1	provisional	p.N55H	0.391	100	0%	171	42.1%	0	-	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
COPS8	10920	genome.wustl.edu	37	2	237998635	237998635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006710.4	+1	reviewed	p.R110I	1.000	101	0%	145	24.8%	79	15.1%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_PCI_Csn8
COL6A3	1293	genome.wustl.edu	37	2	238303430	238303430	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004369.3	-1	reviewed	p.V170G	0.144	90	0%	53	30.2%	2	0%	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
RBM44	375316	genome.wustl.edu	37	2	238725761	238725761	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080504.2	+1	validated	p.E68*	0.002	57	0%	20	25%	1	0%	-	-	-	NULL
RBM44	375316	genome.wustl.edu	37	2	238738021	238738021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080504.2	+1	validated	p.S922L	0.000	107	0%	50	24%	0	-	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
SCLY	51540	genome.wustl.edu	37	2	238978070	238978070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016510.4	+1	validated	p.D146N	1.000	72	0%	111	42.3%	16	50%	possibly_damaging(0.786)	tolerated(0.16)	neutral(0.354)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
SCLY	51540	genome.wustl.edu	37	2	239003069	239003069	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000437134	+1	known	p.R154W	0.947	71	0%	138	36.2%	8	50%	-	-	-	superfamily_PLP-dependent transferases
ESPNL	339768	genome.wustl.edu	37	2	239039907	239039907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194312.2	+1	validated	p.S851N	0.998	12	0%	21	42.9%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
ESPNL	339768	genome.wustl.edu	37	2	239040133	239040133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194312.2	+1	validated	p.F926L	1.000	10	0%	19	21.1%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
PER2	8864	genome.wustl.edu	37	2	239186400	239186400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022817.2	-1	reviewed	p.D60N	0.001	78	0%	94	30.9%	6	50%	possibly_damaging(0.909)	tolerated(0.28)	neutral(0.393)	NULL
GPC1	2817	genome.wustl.edu	37	2	241401804	241401804	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000425056	+1	known	p.S170Y	0.917	11	0%	21	38.1%	55	36.3%	-	-	-	HMMPfam_Glypican
KIF1A	547	genome.wustl.edu	37	2	241660418	241660418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004321.4	-1	reviewed	p.S1493L	0.996	43	0%	52	26.9%	85	40%	benign(0.006)	tolerated(0.07)	neutral(0.319)	NULL
SNED1	25992	genome.wustl.edu	37	2	242021765	242021765	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080437.1	+1	provisional	p.G1369	0.355	166	0%	232	25.9%	2	0%	-	-	-	NULL
PASK	23178	genome.wustl.edu	37	2	242066117	242066117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015148.2	-1	validated	p.S738L	0.025	33	0%	60	35%	13	7.6%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
HDLBP	3069	genome.wustl.edu	37	2	242169073	242169073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005336.3	-1	validated	p.F1250L	0.966	169	0%	244	31.6%	333	39.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CHL1	10752	genome.wustl.edu	37	3	370022	370022	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006614.2	+1	reviewed	p.E124*	1.000	101	0%	59	39%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
CHL1	10752	genome.wustl.edu	37	3	405064	405064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006614.2	+1	reviewed	p.R528I	0.997	116	0%	71	28.2%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00409
CNTN6	27255	genome.wustl.edu	37	3	1415393	1415393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014461.2	+1	reviewed	p.F631C	1.000	64	0%	30	23.3%	0	-	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN6	27255	genome.wustl.edu	37	3	1444071	1444071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014461.2	+1	reviewed	p.L963M	0.313	133	0%	106	37.7%	1	0%	possibly_damaging(0.903)	tolerated(0.06)	deleterious(0.680)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN6	27255	genome.wustl.edu	37	3	1445027	1445027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014461.2	+1	reviewed	p.F1004L	0.000	211	0%	115	32.2%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
CNTN4	152330	genome.wustl.edu	37	3	2942427	2942427	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175607.1	+1	reviewed	p.V333	0.812	105	0%	105	37.1%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CNTN4	152330	genome.wustl.edu	37	3	3081894	3081894	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175607.1	+1	reviewed	p.V779	1.000	88	0%	38	28.9%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TRNT1	51095	genome.wustl.edu	37	3	3188258	3188258	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182916.2	+1	validated	p.V251	0.109	229	0%	243	23.5%	8	25%	-	-	-	superfamily_Poly A polymerase C-terminal region-like
TRNT1	51095	genome.wustl.edu	37	3	3189373	3189373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182916.2	+1	validated	p.D348Y	1.000	61	0%	57	21.1%	10	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Poly A polymerase C-terminal region-like
TRNT1	51095	genome.wustl.edu	37	3	3189768	3189768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182916.2	+1	validated	p.R412Q	1.000	93	0%	73	34.2%	15	40%	possibly_damaging(0.925)	tolerated(0.2)	neutral(0.422)	superfamily_Poly A polymerase C-terminal region-like
ITPR1	3708	genome.wustl.edu	37	3	4738861	4738861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099952.2	+1	reviewed	p.H1429N	1.000	119	0%	86	32.6%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4821245	4821245	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099952.2	+1	reviewed	p.S2053	0.043	67	0%	48	35.4%	4	50%	-	-	-	NULL
EDEM1	9695	genome.wustl.edu	37	3	5246809	5246809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014674.2	+1	validated	p.A367V	1.000	105	0%	60	36.7%	14	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases
EDEM1	9695	genome.wustl.edu	37	3	5255032	5255032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014674.2	+1	validated	p.K570T	0.983	87	0%	58	25.9%	21	23.8%	benign(0.005)	tolerated(0.32)	neutral(0.024)	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases
GRM7	2917	genome.wustl.edu	37	3	6903489	6903489	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181874.2	+1	reviewed	p.N138	1.000	55	0%	97	27.8%	1	0%	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM7	2917	genome.wustl.edu	37	3	7620629	7620629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181874.2	+1	reviewed	p.R679Q	1.000	126	0%	92	34.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
CAV3	859	genome.wustl.edu	37	3	8787397	8787397	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001234.3	+1	reviewed	p.I100	1.000	133	0%	127	31.5%	0	-	-	-	-	HMMPfam_Caveolin
SRGAP3	9901	genome.wustl.edu	37	3	9166409	9166409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014850.2	-1	validated	p.K87R	1.000	52	0%	80	37.5%	11	36.3%	benign(0.003)	tolerated(0.74)	neutral(0.002)	HMMPfam_FCH,HMMSmart_SM00055
SRGAP3	9901	genome.wustl.edu	37	3	9166600	9166600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014850.2	-1	validated	p.E23D	1.000	36	0%	48	27.1%	8	50%	benign(0.064)	tolerated(0.21)	neutral(0.048)	HMMPfam_FCH,HMMSmart_SM00055
CPNE9	151835	genome.wustl.edu	37	3	9754694	9754694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153635.2	+1	validated	p.N194S	1.000	53	0%	39	41%	0	-	benign(0.057)	deleterious(0.01)	neutral(0.409)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CPNE9	151835	genome.wustl.edu	37	3	9767648	9767648	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000273027	+1	known	p.S151Y	1.000	133	0%	150	28%	0	-	-	-	-	HMMPfam_Copine,superfamily_vWA-like
CIDEC	63924	genome.wustl.edu	37	3	9918827	9918827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022094.2	-1	provisional	p.P44T	1.000	25	0%	29	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CIDE-N,HMMSmart_SM00266,superfamily_CAD  PB1 domains
LOC401052	401052	genome.wustl.edu	37	3	10049178	10049178	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008737.1	-1	predicted	p.S69	0.001	99	0%	175	29.7%	2	50%	-	-	-	NULL
FANCD2	2177	genome.wustl.edu	37	3	10130579	10130579	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033084.3	+1	reviewed	p.E1210*	1.000	179	0%	140	29.3%	23	8.6%	-	-	-	NULL
GHRL	51738	genome.wustl.edu	37	3	10328418	10328418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016362.3	-1	reviewed	p.L102I	0.983	91	0%	44	11.4%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Motilin_assoc
ATP2B2	491	genome.wustl.edu	37	3	10401729	10401729	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001331.2	-1	reviewed	p.L580	1.000	41	0%	44	34.1%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
SLC6A11	6538	genome.wustl.edu	37	3	10861206	10861206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014229.1	+1	provisional	p.F105I	1.000	402	0%	593	34.4%	0	-	possibly_damaging(0.522)	tolerated(0.07)	deleterious(0.495)	HMMPfam_SNF
SLC6A11	6538	genome.wustl.edu	37	3	10916759	10916759	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014229.1	+1	provisional	p.L290	0.989	93	0%	59	30.5%	0	-	-	-	-	HMMPfam_SNF
SLC6A1	6529	genome.wustl.edu	37	3	11072886	11072886	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003042.3	+1	validated	p.L449	0.042	271	0%	244	29.1%	0	-	-	-	-	HMMPfam_SNF
TAMM41	132001	genome.wustl.edu	37	3	11851045	11851045	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138807.2	-1	provisional	p.E274*	1.000	232	0%	169	27.8%	7	42.8%	-	-	-	HMMPfam_Mmp37
TIMP4	7079	genome.wustl.edu	37	3	12198915	12198915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003256.2	-1	reviewed	p.K69N	1.000	266	0%	419	23.6%	1	0%	benign(0.39)	tolerated(0.08)	neutral(0.425)	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like
PPARG	5468	genome.wustl.edu	37	3	12393128	12393128	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015869.4	+1	reviewed	p.E13*	0.934	141	0%	86	31.4%	0	-	-	-	-	NULL
TSEN2	80746	genome.wustl.edu	37	3	12533656	12533656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145392.1	+1	reviewed	p.L71F	1.000	163	0%	157	21%	1	100%	possibly_damaging(0.876)	tolerated(0.18)	neutral(0.397)	NULL
HDAC11	79885	genome.wustl.edu	37	3	13543419	13543419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024827.3	+1	reviewed	p.L180I	0.967	122	0%	155	34.8%	31	58%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
XPC	7508	genome.wustl.edu	37	3	14188850	14188850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004628.4	-1	reviewed	p.W848C	1.000	139	0%	146	21.2%	37	29.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XPC	7508	genome.wustl.edu	37	3	14193883	14193883	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004628.4	-1	reviewed	p.T689	0.271	147	0%	129	31%	43	25.5%	unknown(0)	deleterious(0.01)	-	HMMPfam_BHD_2
C3orf19	51244	genome.wustl.edu	37	3	14695972	14695972	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016474.4	+1	validated	p.E28*	1.000	98	0%	36	25%	9	66.6%	-	-	-	NULL
C3orf20	84077	genome.wustl.edu	37	3	14724266	14724266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032137.4	+1	validated	p.A16T	0.012	88	0%	80	35%	0	-	possibly_damaging(0.788)	deleterious(0)	deleterious(0.740)	NULL
ZFYVE20	64145	genome.wustl.edu	37	3	15115481	15115481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022340.2	-1	validated	p.E721D	0.907	99	0%	79	19%	11	9%	benign(0)	deleterious(0)	neutral(0.445)	NULL
CAPN7	23473	genome.wustl.edu	37	3	15259991	15259991	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014296.2	+1	reviewed	p.T127	1.000	97	0%	72	25%	4	0%	-	-	-	HMMPfam_MIT,HMMSmart_MIT
CAPN7	23473	genome.wustl.edu	37	3	15265040	15265040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014296.2	+1	reviewed	p.E233*	1.000	179	0%	81	29.6%	17	23.5%	-	-	-	HMMSmart_CysPc,superfamily_SSF54001
BTD	686	genome.wustl.edu	37	3	15686333	15686333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000060.2	+1	reviewed	p.D324Y	0.964	60	0%	34	14.7%	5	0%	possibly_damaging(0.801)	deleterious(0.02)	deleterious(0.684)	superfamily_Carbon-nitrogen hydrolase
ANKRD28	23243	genome.wustl.edu	37	3	15727627	15727627	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015199.2	-1	provisional	e20-1	1.000	192	0%	83	24.1%	2	100%	-	-	-	-
ANKRD28	23243	genome.wustl.edu	37	3	15836736	15836736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015199.2	-1	provisional	p.N35K	1.000	106	0%	42	38.1%	3	100%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD28	23243	genome.wustl.edu	37	3	15836768	15836768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015199.2	-1	provisional	p.R25*	1.000	110	0%	41	29.3%	5	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SATB1	6304	genome.wustl.edu	37	3	18390812	18390812	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001131010.1	-1	validated	p.V714	1.000	181	0.6%	225	12.9%	3	0%	-	-	-	superfamily_Homeodomain-like
KCNH8	131096	genome.wustl.edu	37	3	19190284	19190284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144633.2	+1	reviewed	p.T25A	1.000	94	0%	217	29.5%	0	-	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	NULL
KCNH8	131096	genome.wustl.edu	37	3	19295355	19295355	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144633.2	+1	reviewed	p.E96*	1.000	90	0%	38	31.6%	0	-	-	-	-	HMMSmart_PAC,HMMPfam_PAS,superfamily_SSF55785
ZNF385D	79750	genome.wustl.edu	37	3	21465486	21465486	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024697.2	-1	validated	p.N308T	1.000	218	0%	114	37.7%	7	28.5%	probably_damaging(1)	tolerated(0.62)	deleterious(0.504)	NULL
TOP2B	7155	genome.wustl.edu	37	3	25640999	25640999	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001068.2	-1	reviewed	p.K1541T	1.000	434	0%	153	33.3%	309	46.9%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_DTHCT
TOP2B	7155	genome.wustl.edu	37	3	25660275	25660275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001068.2	-1	reviewed	p.F1038L	1.000	107	0%	69	26.1%	100	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_topoisoIV,HMMSmart_TOP4c,superfamily_Topo_IIA_cen
TOP2B	7155	genome.wustl.edu	37	3	25665815	25665815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001068.2	-1	reviewed	p.S818N	1.000	140	0%	80	28.7%	178	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DNA_topoisoIV,HMMSmart_TOP4c,superfamily_Topo_IIA_cen
TOP2B	7155	genome.wustl.edu	37	3	25679679	25679679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001068.2	-1	reviewed	p.D168G	1.000	166	0%	110	33.6%	36	47.2%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	HMMSmart_TOP2c,HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
TOP2B	7155	genome.wustl.edu	37	3	25683839	25683839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001068.2	-1	reviewed	p.M118I	1.000	95	0%	89	30.3%	57	31.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_TOP2c,HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
OXSM	54995	genome.wustl.edu	37	3	25836009	25836009	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026937.1	+1	reviewed	NULL	0.000	23	0%	20	45%	1	0%	-	-	-	-
NEK10	152110	genome.wustl.edu	37	3	27337131	27337131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199347.2	-1	validated	p.K427N	1.000	411	0%	160	29.4%	0	-	benign(0.014)	tolerated(0.49)	neutral(0.011)	superfamily_ARM repeat
SLC4A7	9497	genome.wustl.edu	37	3	27460063	27460063	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003615.3	-1	validated	p.E516*	1.000	149	0%	62	29%	6	0%	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A7	9497	genome.wustl.edu	37	3	27475554	27475554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003615.3	-1	validated	p.E202K	1.000	203	0%	109	31.2%	1	0%	benign(0.028)	tolerated(0.32)	neutral(0.026)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
AZI2	64343	genome.wustl.edu	37	3	28381915	28381915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022461.3	-1	validated	p.R65I	1.000	154	0%	94	34%	9	55.5%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
TGFBR2	7048	genome.wustl.edu	37	3	30713506	30713506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024847.2	+1	reviewed	p.K302N	1.000	75	0%	76	31.6%	23	26%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
STT3B	201595	genome.wustl.edu	37	3	31674463	31674463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178862.1	+1	provisional	p.R742C	1.000	104	0%	57	22.8%	157	43.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OSBPL10	114884	genome.wustl.edu	37	3	31705605	31705605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017784.4	-1	reviewed	p.R739H	0.002	115	0%	85	27.1%	22	40.9%	benign(0.009)	tolerated(0.12)	neutral(0.261)	HMMPfam_Oxysterol_BP
ZNF860	344787	genome.wustl.edu	37	3	32030869	32030869	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137674.1	+1	provisional	p.F100V	0.236	117	0%	120	15%	3	0%	possibly_damaging(0.864)	tolerated(0.32)	neutral(0.359)	NULL
CMTM6	54918	genome.wustl.edu	37	3	32533245	32533245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017801.2	-1	reviewed	p.T91I	0.995	103	0%	87	36.8%	28	46.4%	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	HMMPfam_MARVEL
FBXL2	25827	genome.wustl.edu	37	3	33400458	33400458	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012157.3	+1	reviewed	e3-1	1.000	140	0%	77	31.2%	0	-	-	-	-	-
PDCD6IP	10015	genome.wustl.edu	37	3	33883522	33883522	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013374.4	+1	validated	p.E439*	1.000	84	0%	117	35%	39	5.1%	-	-	-	NULL
TRANK1	9881	genome.wustl.edu	37	3	36874318	36874318	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014831.2	-1	provisional	p.E1658D	0.003	88	0%	73	27.4%	5	40%	possibly_damaging(0.658)	tolerated(0.23)	neutral(0.274)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36874950	36874950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014831.2	-1	provisional	p.D1448N	1.000	35	0%	23	17.4%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36915688	36915688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429976	-1	known	p.K285T	1.000	180	0%	70	41.4%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	superfamily_Ankyrin repeat
LRRFIP2	9209	genome.wustl.edu	37	3	37114352	37114352	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006309.2	-1	validated	p.K465*	1.000	234	0%	115	36.5%	1	0%	-	-	-	HMMPfam_DUF2051
LRRFIP2	9209	genome.wustl.edu	37	3	37136336	37136336	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006309.2	-1	validated	p.S328R	1.000	207	0%	96	39.6%	28	53.5%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_DUF2051
GOLGA4	2803	genome.wustl.edu	37	3	37370565	37370565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002078.4	+1	reviewed	p.R2058K	1.000	138	0%	111	37.8%	43	41.8%	benign(0)	deleterious(0)	neutral(0.445)	NULL
VILL	50853	genome.wustl.edu	37	3	38048042	38048042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015873.3	+1	reviewed	p.L770M	0.764	35	0%	63	12.7%	6	0%	benign(0.416)	tolerated(0.19)	neutral(0.184)	NULL
PLCD1	5333	genome.wustl.edu	37	3	38049554	38049554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130964.1	-1	validated	p.K733N	1.000	113	0%	194	27.3%	37	27%	benign(0.023)	tolerated(0.19)	neutral(0.051)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
ACAA1	30	genome.wustl.edu	37	3	38168168	38168168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001607.3	-1	reviewed	p.G217V	1.000	130	0%	128	32%	129	39.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
MYD88	4615	genome.wustl.edu	37	3	38180299	38180299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002468.4	+1	reviewed	p.F49L	1.000	37	0%	56	25%	8	25%	probably_damaging(0.953)	tolerated(0.12)	deleterious(0.657)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
MYD88	4615	genome.wustl.edu	37	3	38182705	38182705	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002468.4	+1	reviewed	p.V286	0.959	114	0%	200	10%	33	6%	-	-	-	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
ACVR2B	93	genome.wustl.edu	37	3	38518936	38518936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001106.3	+1	reviewed	p.E71K	1.000	35	0%	53	43.4%	6	66.6%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_Activin_recp,superfamily_Snake toxin-like
SCN5A	6331	genome.wustl.edu	37	3	38598016	38598016	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099404.1	-1	reviewed	p.V1451	0.789	204	0%	134	30.6%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN5A	6331	genome.wustl.edu	37	3	38622577	38622577	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099404.1	-1	reviewed	p.E1025*	1.000	55	0%	70	30%	0	-	-	-	-	HMMPfam_Na_trans_assoc
SCN5A	6331	genome.wustl.edu	37	3	38655514	38655514	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099404.1	-1	reviewed	p.R219*	1.000	102	0%	125	39.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN10A	6336	genome.wustl.edu	37	3	38812884	38812884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006514.2	-1	validated	p.V162A	0.942	114	0%	74	35.1%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Ion_trans,superfamily_SSF81324
SCN11A	11280	genome.wustl.edu	37	3	38892010	38892010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014139.2	-1	validated	p.N1430T	1.000	102	0%	43	18.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38921503	38921503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014139.2	-1	validated	p.A1111T	1.000	92	0%	46	32.6%	0	-	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN11A	11280	genome.wustl.edu	37	3	38949516	38949516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014139.2	-1	validated	p.R466M	0.567	138	0%	47	21.3%	1	0%	possibly_damaging(0.848)	deleterious(0.03)	deleterious(0.690)	NULL
SCN11A	11280	genome.wustl.edu	37	3	38950530	38950530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014139.2	-1	validated	p.K419N	0.964	185	0%	82	19.5%	0	-	benign(0.202)	tolerated(0.09)	neutral(0.316)	NULL
MYRIP	25924	genome.wustl.edu	37	3	39942380	39942380	+	Missense_Mutation	SNP	G	G	A	rs150544621	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015460.2	+1	validated	p.D25N	1.000	63	0%	34	20.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FYVE_PHD_ZnF
MYRIP	25924	genome.wustl.edu	37	3	40192556	40192556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015460.2	+1	validated	p.S117Y	1.000	68	0%	39	30.8%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FYVE_PHD_ZnF
MYRIP	25924	genome.wustl.edu	37	3	40251479	40251479	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015460.2	+1	validated	p.S600	0.998	70	0%	39	28.2%	4	50%	-	-	-	NULL
ZNF619	285267	genome.wustl.edu	37	3	40529915	40529915	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026746.2	+1	validated	NULL	0.022	15	0%	12	41.7%	2	0%	-	-	-	-
ZNF620	253639	genome.wustl.edu	37	3	40557832	40557832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175888.2	+1	validated	p.K249N	0.998	72	0%	103	29.1%	5	40%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	superfamily_C2H2 and C2HC zinc fingers
ZNF621	285268	genome.wustl.edu	37	3	40573694	40573694	+	Nonsense_Mutation	SNP	C	C	T	rs181239875	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098414.1	+1	validated	p.R145*	0.912	97	0%	122	36.1%	9	44.4%	-	-	-	NULL
ULK4	54986	genome.wustl.edu	37	3	41795894	41795894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017886.2	-1	validated	p.L760F	0.706	108	0%	91	30.8%	2	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	superfamily_ARM-type_fold
ULK4	54986	genome.wustl.edu	37	3	41977373	41977373	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017886.2	-1	validated	p.E100*	1.000	197	0%	84	29.8%	1	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
TRAK1	22906	genome.wustl.edu	37	3	42132982	42132982	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042646.1	+1	validated	p.F7	0.000	152	0%	173	25.4%	0	-	-	-	-	NULL
CCK	885	genome.wustl.edu	37	3	42299712	42299712	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000729.4	-1	reviewed	p.R76*	1.000	118	0%	133	38.3%	1	0%	-	-	-	HMMPfam_Gastrin
SEC22C	9117	genome.wustl.edu	37	3	42602716	42602716	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032970.2	-1	reviewed	p.K140T	0.977	75	0%	36	30.6%	15	46.6%	probably_damaging(0.965)	tolerated(0.11)	deleterious(0.678)	NULL
NKTR	4820	genome.wustl.edu	37	3	42678484	42678484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005385.3	+1	reviewed	p.R430C	1.000	57	0%	60	33.3%	9	55.5%	unknown(0)	deleterious(0)	-	NULL
KBTBD5	131377	genome.wustl.edu	37	3	42729742	42729742	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152393.2	+1	validated	p.E421*	1.000	23	4.3%	59	25.4%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KBTBD5	131377	genome.wustl.edu	37	3	42730206	42730206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152393.2	+1	validated	p.D473G	0.986	96	0%	161	34.2%	0	-	benign(0.004)	tolerated(0.18)	neutral(0.056)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
LOC100287203	100287203	genome.wustl.edu	37	3	42733342	42733342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342329.1	-1	model	p.G9V	0.000	41	0%	61	16.4%	0	-	-	-	-	NULL
HHATL	57467	genome.wustl.edu	37	3	42734255	42734255	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000426666	-1	known	p.E121*	0.995	124	0%	154	33.1%	0	-	unknown(0)	tolerated(0.24)	-	NULL
CCDC13	152206	genome.wustl.edu	37	3	42781243	42781243	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144719.3	-1	validated	p.F349	0.170	170	0%	131	29.8%	2	0%	-	-	-	NULL
CCDC13	152206	genome.wustl.edu	37	3	42794180	42794180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144719.3	-1	validated	p.A134T	1.000	141	0%	115	27.8%	3	66.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
CYP8B1	1582	genome.wustl.edu	37	3	42916005	42916005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004391.2	-1	reviewed	p.S435L	0.067	66	0%	76	28.9%	0	-	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	HMMPfam_p450,superfamily_Cytochrome P450
ZNF662	389114	genome.wustl.edu	37	3	42956284	42956284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134656.1	+1	validated	p.R266I	0.904	89	0%	113	43.4%	0	-	probably_damaging(0.973)	tolerated(0.05)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C3orf39	84892	genome.wustl.edu	37	3	43121931	43121931	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032806.4	-1	provisional	p.V331	0.258	42	0%	72	33.3%	67	35.8%	-	-	-	NULL
C3orf39	84892	genome.wustl.edu	37	3	43122314	43122314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032806.4	-1	provisional	p.D204N	0.998	36	0%	40	27.5%	38	36.8%	possibly_damaging(0.444)	tolerated(0.07)	neutral(0.464)	NULL
C3orf39	84892	genome.wustl.edu	37	3	43122762	43122762	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032806.4	-1	provisional	p.P54	0.000	17	0%	39	35.9%	43	41.8%	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44285082	44285082	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145030.1	+1	validated	p.E362*	0.206	39	0%	43	44.2%	0	-	-	-	-	NULL
C3orf77	375337	genome.wustl.edu	37	3	44286099	44286099	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145030.1	+1	validated	p.E701*	0.000	36	0%	64	26.6%	0	-	-	-	-	HMMPfam_PAZ
C3orf77	375337	genome.wustl.edu	37	3	44364722	44364722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145030.1	+1	validated	p.L1537P	0.996	97	0%	61	34.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44369893	44369893	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145030.1	+1	validated	p.T1609	0.296	123	0%	93	21.5%	0	-	-	-	-	NULL
ZNF445	353274	genome.wustl.edu	37	3	44488159	44488159	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181489.5	-1	validated	p.R1002*	0.015	257	0%	125	22.4%	4	50%	-	-	-	superfamily_SSF57667
ZNF852	285346	genome.wustl.edu	37	3	44541187	44541187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000436261	-1	known	p.G361V	1.000	63	0%	54	42.6%	5	20%	possibly_damaging(0.638)	deleterious(0)	deleterious(0.668)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF167	55888	genome.wustl.edu	37	3	44612097	44612097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018651.2	+1	validated	p.E499*	0.006	92	0%	84	34.5%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF167	55888	genome.wustl.edu	37	3	44612293	44612293	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018651.2	+1	validated	p.K564T	0.001	103	0%	107	35.5%	3	100%	probably_damaging(0.978)	tolerated(0.28)	neutral(0.452)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF167	55888	genome.wustl.edu	37	3	44612750	44612750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018651.2	+1	validated	p.E716D	1.000	117	0%	120	40%	2	0%	possibly_damaging(0.748)	deleterious(0.02)	deleterious(0.657)	superfamily_C2H2 and C2HC zinc fingers
ZNF502	91392	genome.wustl.edu	37	3	44762563	44762563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134440.1	+1	validated	p.R85K	0.000	66	0%	66	9.1%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	NULL
CLEC3B	7123	genome.wustl.edu	37	3	45077071	45077071	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003278.2	+1	validated	p.T88	0.000	24	0%	64	40.6%	4	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CDCP1	64866	genome.wustl.edu	37	3	45127153	45127153	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022842.3	-1	reviewed	p.E830*	0.000	138	0%	73	39.7%	25	60%	-	-	-	NULL
SLC6A20	54716	genome.wustl.edu	37	3	45801515	45801515	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020208.3	-1	reviewed	e10-1	1.000	44	0%	62	35.5%	0	-	-	-	-	-
LZTFL1	54585	genome.wustl.edu	37	3	45872607	45872607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020347.2	-1	validated	p.E160D	0.992	183	0%	94	25.5%	13	61.5%	possibly_damaging(0.468)	tolerated(0.06)	deleterious(0.476)	NULL
CCR9	10803	genome.wustl.edu	37	3	45942961	45942961	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031200.1	+1	reviewed	p.F227	0.000	213	0%	154	33.1%	2	100%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FYCO1	79443	genome.wustl.edu	37	3	46009415	46009415	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024513.2	-1	validated	p.R471*	0.000	56	0%	47	40.4%	1	0%	-	-	-	superfamily_Prefoldin
CCR1	1230	genome.wustl.edu	37	3	46244960	46244960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001295.2	-1	reviewed	p.A282V	0.995	60	0%	32	28.1%	8	0%	benign(0.156)	deleterious(0.02)	neutral(0.397)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCR2	729230	genome.wustl.edu	37	3	46399297	46399297	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123041.2	+1	validated	p.I93	0.600	243	0%	170	12.9%	7	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TMIE	259236	genome.wustl.edu	37	3	46747384	46747384	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_147196.2	+1	reviewed	p.F66	1.000	93	0%	183	29%	0	-	-	-	-	NULL
PTH1R	5745	genome.wustl.edu	37	3	46940823	46940823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000316.2	+1	reviewed	p.L289I	1.000	173	0%	379	25.3%	2	50%	benign(0.089)	tolerated(0.33)	neutral(0.030)	HMMPfam_7tm_2,superfamily_SSF81321
SETD2	29072	genome.wustl.edu	37	3	47164011	47164011	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000445387	-1	known	p.G339R	0.968	95	0%	44	34.1%	8	50%	-	-	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47164540	47164540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014159.6	-1	reviewed	p.R529I	1.000	139	0%	73	28.8%	8	37.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SETD2	29072	genome.wustl.edu	37	3	47164724	47164724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014159.6	-1	reviewed	p.T468A	1.000	162	0%	78	37.2%	11	81.8%	benign(0.141)	deleterious(0)	neutral(0.457)	NULL
KIF9	64147	genome.wustl.edu	37	3	47288866	47288866	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134878.1	-1	validated	p.I410	0.066	80	0%	81	25.9%	2	50%	-	-	-	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47676808	47676808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003074.3	-1	validated	p.E840*	1.000	311	0%	235	25.5%	27	7.4%	-	-	-	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47752239	47752239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003074.3	-1	validated	p.D284E	1.000	160	0%	120	32.5%	18	5.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_BRCT
PFKFB4	5210	genome.wustl.edu	37	3	48573875	48573875	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004567.2	-1	provisional	p.I218	1.000	35	0%	43	34.9%	11	18.1%	-	-	-	HMMPfam_6PF2K,superfamily_SSF52540
SLC26A6	65010	genome.wustl.edu	37	3	48663749	48663749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022911.2	-1	reviewed	p.D723N	0.976	45	0%	86	38.4%	63	36.5%	benign(0.014)	tolerated(0.07)	neutral(0.320)	HMMPfam_STAS,superfamily_Anti-sigma factor antagonist SpoIIaa
CELSR3	1951	genome.wustl.edu	37	3	48697816	48697816	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001407.2	-1	reviewed	p.D751A	1.000	28	0%	70	32.9%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PRKAR2A	5576	genome.wustl.edu	37	3	48831472	48831472	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004157.2	-1	reviewed	p.E103	0.878	275	0%	177	25.4%	11	45.4%	-	-	-	superfamily_cNMP_binding
USP19	10869	genome.wustl.edu	37	3	49153595	49153595	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006677.1	-1	provisional	p.R351	1.000	45	0%	67	20.9%	39	38.4%	-	-	-	superfamily_HSP20-like chaperones,HMMPfam_DUF1872
CCDC36	339834	genome.wustl.edu	37	3	49293903	49293903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135197.1	+1	validated	p.A325S	0.000	48	0%	43	18.6%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
CCDC36	339834	genome.wustl.edu	37	3	49294339	49294339	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135197.1	+1	validated	p.K470T	0.000	102	0%	109	23.9%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
C3orf62	375341	genome.wustl.edu	37	3	49308863	49308863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198562.2	-1	validated	p.R185Q	1.000	72	0%	99	30.3%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C3orf62	375341	genome.wustl.edu	37	3	49313874	49313874	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198562.2	-1	validated	p.R144	0.913	215	0.5%	358	35.2%	11	54.5%	-	-	-	NULL
APEH	327	genome.wustl.edu	37	3	49716286	49716286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001640.3	+1	reviewed	p.E354D	0.934	83	0%	132	31.8%	103	32%	benign(0)	tolerated(1)	-	superfamily_Peptidase_S9A_N
GMPPB	29925	genome.wustl.edu	37	3	49760467	49760467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013334.2	-1	reviewed	p.D114N	1.000	42	0%	69	31.9%	37	21.6%	benign(0.182)	tolerated(0.27)	neutral(0.050)	HMMPfam_NTP_transferase,superfamily_SSF53448
CAMKV	79012	genome.wustl.edu	37	3	49897628	49897628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024046.3	-1	validated	p.K306N	1.000	112	0%	168	23.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEMA3F	6405	genome.wustl.edu	37	3	50214233	50214233	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004186.3	+1	validated	p.L194	1.000	50	0%	98	24.5%	22	31.8%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
ZMYND10	51364	genome.wustl.edu	37	3	50379559	50379559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015896.2	-1	validated	p.L296I	1.000	99	0%	204	28.9%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
DOCK3	1795	genome.wustl.edu	37	3	51413217	51413217	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004947.3	+1	validated	p.V1817	0.991	173	0%	204	28.9%	2	100%	-	-	-	NULL
VPRBP	9730	genome.wustl.edu	37	3	51464927	51464927	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014703.2	-1	validated	p.A528	0.001	78	0%	47	19.1%	12	58.3%	-	-	-	superfamily_ARM repeat
PCBP4	57060	genome.wustl.edu	37	3	51994677	51994677	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020418.3	-1	reviewed	p.A6	0.000	94	0%	147	38.8%	0	-	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52432906	52432906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015512.4	+1	validated	p.D4044Y	0.983	31	0%	91	29.7%	8	62.5%	benign(0.068)	tolerated(0.16)	neutral(0.064)	HMMPfam_Dynein_heavy
STAB1	23166	genome.wustl.edu	37	3	52542326	52542326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015136.2	+1	reviewed	p.C729Y	1.000	119	0%	181	24.9%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00181,PatternScan_CYTOCHROME_P450,superfamily_EGF/Laminin
PBRM1	55193	genome.wustl.edu	37	3	52597438	52597438	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018165.4	-1	validated	p.F1284C	1.000	178	0%	127	28.3%	28	42.8%	probably_damaging(0.989)	tolerated(0.18)	deleterious(0.495)	NULL
ITIH1	3697	genome.wustl.edu	37	3	52823866	52823866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002215.2	+1	reviewed	p.D773Y	0.642	57	0%	91	31.9%	0	-	benign(0.133)	deleterious(0.03)	neutral(0.376)	HMMPfam_ITI_HC_C
CACNA1D	776	genome.wustl.edu	37	3	53694194	53694194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000720.2	+1	validated	p.E220*	1.000	51	0%	33	30.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53837533	53837533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000720.2	+1	validated	p.L1860S	0.467	93	0%	106	28.3%	0	-	benign(0.005)	tolerated(0.44)	neutral(0.013)	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54919350	54919350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018398.2	+1	reviewed	p.E652G	1.000	120	0%	76	39.5%	3	66.6%	possibly_damaging(0.863)	tolerated(0.13)	deleterious(0.586)	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	55018661	55018661	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018398.2	+1	reviewed	p.N861	0.995	126	0%	79	39.2%	1	0%	-	-	-	NULL
ERC2	26059	genome.wustl.edu	37	3	56114979	56114979	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015576.1	-1	validated	p.E503*	1.000	264	0%	56	33.9%	0	-	-	-	-	superfamily_Prefoldin,HMMPfam_Cast
FAM208A	23272	genome.wustl.edu	37	3	56657592	56657592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015224.3	-1	validated	p.L1059I	1.000	116	0%	61	11.5%	10	0%	possibly_damaging(0.945)	tolerated(0.47)	neutral(0.401)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56703777	56703777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001112736.1	-1	validated	p.P229H	1.000	96	0%	79	30.4%	9	22.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
APPL1	26060	genome.wustl.edu	37	3	57291360	57291360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012096.2	+1	reviewed	p.S445Y	1.000	147	0%	133	32.3%	25	28%	possibly_damaging(0.906)	deleterious(0.03)	deleterious(0.724)	NULL
APPL1	26060	genome.wustl.edu	37	3	57293094	57293094	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012096.2	+1	reviewed	p.K490T	0.991	138	0%	102	33.3%	10	50%	benign(0.024)	tolerated(0.7)	neutral(0.003)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57326127	57326127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000295941	-1	known	p.L2449I	0.017	183	0%	84	34.5%	0	-	-	-	-	NULL
DNAH12	201625	genome.wustl.edu	37	3	57343267	57343267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178504.4	-1	validated	p.D2833N	1.000	215	0%	116	30.2%	0	-	possibly_damaging(0.848)	tolerated(0.12)	deleterious(0.586)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57368547	57368547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000462199	-1	known	p.E131*	0.000	182	0%	249	30.1%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_Dynein_heavy
DNAH12	201625	genome.wustl.edu	37	3	57389125	57389125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178504.4	-1	validated	p.R2268C	1.000	188	0.5%	104	30.8%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH12	201625	genome.wustl.edu	37	3	57407419	57407419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178504.4	-1	validated	p.F1777L	1.000	76	0%	55	25.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57493417	57493417	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178504.4	-1	validated	p.K284Q	0.985	153	0%	143	18.2%	0	-	benign(0.414)	tolerated(0.49)	neutral(0.145)	NULL
ARF4	378	genome.wustl.edu	37	3	57563077	57563077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001660.3	-1	reviewed	p.R99I	1.000	139	0%	110	25.5%	171	41.5%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
FLNB	2317	genome.wustl.edu	37	3	58094286	58094286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001457.3	+1	reviewed	p.K681N	1.000	90	0%	52	34.6%	20	45%	possibly_damaging(0.912)	tolerated(0.12)	deleterious(0.624)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
DNASE1L3	1776	genome.wustl.edu	37	3	58178459	58178459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004944.2	-1	reviewed	p.K291N	0.000	184	0%	192	27.1%	0	-	benign(0.15)	tolerated(0.18)	neutral(0.069)	NULL
PDHB	5162	genome.wustl.edu	37	3	58415443	58415443	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000925.3	-1	reviewed	p.E262*	1.000	202	0%	279	22.6%	69	2.8%	-	-	-	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
ACOX2	8309	genome.wustl.edu	37	3	58519752	58519752	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003500.3	-1	reviewed	p.I148	0.016	181	0%	158	34.2%	1	0%	-	-	-	superfamily_AcylCoA_dehyd_NM
FAM107A	11170	genome.wustl.edu	37	3	58555509	58555509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001076778.1	-1	validated	p.E27K	1.000	93	0%	69	30.4%	2	0%	possibly_damaging(0.646)	deleterious(0.01)	deleterious(0.632)	HMMPfam_DUF1151
PTPRG	5793	genome.wustl.edu	37	3	61989043	61989043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002841.3	+1	reviewed	p.D131N	1.000	124	0%	59	35.6%	5	60%	benign(0.372)	deleterious(0)	deleterious(0.563)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRG	5793	genome.wustl.edu	37	3	62229530	62229530	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002841.3	+1	reviewed	p.R809*	0.999	196	0%	52	30.8%	15	0%	-	-	-	NULL
ADAMTS9	56999	genome.wustl.edu	37	3	64617528	64617528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182920.1	-1	reviewed	p.S750Y	1.000	359	0%	131	27.5%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRIG1	26018	genome.wustl.edu	37	3	66444616	66444616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015541.2	-1	validated	p.S439N	1.000	30	0%	28	42.9%	258	49.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_L domain-like
KBTBD8	84541	genome.wustl.edu	37	3	67054474	67054474	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032505.2	+1	validated	p.W335*	1.000	120	0%	160	31.9%	1	100%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KBTBD8	84541	genome.wustl.edu	37	3	67054615	67054615	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032505.2	+1	validated	p.L382	0.342	129	0%	183	36.1%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
SUCLG2	8801	genome.wustl.edu	37	3	67568692	67568692	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000460567	-1	known	p.R105C	0.994	147	0%	129	31.8%	24	29.1%	-	-	-	HMMPfam_ATP-grasp_2,superfamily_Glutathione synthetase ATP-binding domain-like
TMF1	7110	genome.wustl.edu	37	3	69072387	69072387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007114.2	-1	validated	p.D1075Y	1.000	243	0%	254	11.4%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMF1	7110	genome.wustl.edu	37	3	69077056	69077056	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007114.2	-1	validated	p.E918*	1.000	201	0%	156	28.8%	12	16.6%	-	-	-	NULL
TMF1	7110	genome.wustl.edu	37	3	69082718	69082718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007114.2	-1	validated	p.K794N	1.000	178	0%	148	34.5%	12	8.3%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
LMOD3	56203	genome.wustl.edu	37	3	69168078	69168078	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198271.3	-1	validated	p.P476	0.000	181	0%	87	24.1%	0	-	-	-	-	NULL
LMOD3	56203	genome.wustl.edu	37	3	69168304	69168304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198271.3	-1	validated	p.R401Q	1.000	194	0%	99	10.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tropomodulin,superfamily_RNI-like
LMOD3	56203	genome.wustl.edu	37	3	69169206	69169206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198271.3	-1	validated	p.K100N	0.000	131	0%	46	26.1%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
ENSG00000206939	0	genome.wustl.edu	37	3	70857545	70857545	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384212	+1	novel	NULL	0.312	116	0%	99	43.4%	0	-	-	-	-	-
SHQ1	55164	genome.wustl.edu	37	3	72799586	72799586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018130.2	-1	validated	p.S528Y	0.003	84	0%	63	36.5%	30	33.3%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
ROBO2	6092	genome.wustl.edu	37	3	77684173	77684173	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002942.3	+1	reviewed	p.R1305*	1.000	114	0%	84	29.8%	18	22.2%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78683187	78683187	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002941.3	-1	reviewed	p.R1127*	1.000	350	0%	139	32.4%	24	4.1%	-	-	-	NULL
ROBO1	6091	genome.wustl.edu	37	3	78717412	78717412	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002941.3	-1	reviewed	p.P557	0.982	175	0%	83	24.1%	9	0%	-	-	-	superfamily_Fibronectin type III
CADM2	253559	genome.wustl.edu	37	3	86115931	86115931	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153184.3	+1	validated	p.*438E	1.000	79	0%	52	26.9%	0	-	-	-	-	NULL
POU1F1	5449	genome.wustl.edu	37	3	87310438	87310438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122757.1	-1	reviewed	p.R243Q	1.000	254	0%	108	18.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CGGBP1	8545	genome.wustl.edu	37	3	88104786	88104786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008390.1	-1	validated	p.A114G	1.000	130	0%	235	28.5%	78	47.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ZNF654	55279	genome.wustl.edu	37	3	88189095	88189095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018293.2	+1	validated	p.R212I	1.000	93	0%	75	33.3%	8	37.5%	possibly_damaging(0.718)	tolerated(0.16)	neutral(0.320)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C3orf38	285237	genome.wustl.edu	37	3	88205225	88205225	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000318887	+1	known	p.E144*	1.000	118	0%	156	30.8%	15	53.3%	-	-	-	superfamily_NTF2-like
C3orf38	285237	genome.wustl.edu	37	3	88205554	88205554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000318887	+1	known	p.I253M	0.929	208	0%	221	26.7%	24	66.6%	possibly_damaging(0.86)	deleterious(0.03)	deleterious(0.697)	superfamily_NTF2-like
EPHA3	2042	genome.wustl.edu	37	3	89259123	89259123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005233.5	+1	reviewed	p.R89S	0.997	74	0%	76	27.6%	4	50%	possibly_damaging(0.432)	deleterious(0)	deleterious(0.585)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHA3	2042	genome.wustl.edu	37	3	89448494	89448494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005233.5	+1	reviewed	p.I486M	1.000	91	0%	59	37.3%	9	33.3%	probably_damaging(0.997)	tolerated(0.3)	deleterious(0.495)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
EPHA3	2042	genome.wustl.edu	37	3	89457253	89457253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005233.5	+1	reviewed	p.E578D	0.987	316	0%	138	29.7%	6	66.6%	possibly_damaging(0.888)	tolerated(0.41)	neutral(0.362)	NULL
PROS1	5627	genome.wustl.edu	37	3	93617331	93617331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000313.3	-1	reviewed	p.K270N	0.980	134	0%	98	33.7%	2	0%	possibly_damaging(0.78)	tolerated(0.07)	deleterious(0.611)	HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl
PROS1	5627	genome.wustl.edu	37	3	93624880	93624880	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000313.3	-1	reviewed	p.E152*	0.236	99	0%	123	26%	1	0%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
CRYBG3	131544	genome.wustl.edu	37	3	97596208	97596208	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153605.2	+1	validated	p.K109T	0.156	45	0%	25	28%	3	33.3%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
CRYBG3	131544	genome.wustl.edu	37	3	97617806	97617806	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153605.2	+1	validated	p.I646S	1.000	141	0%	48	33.3%	3	100%	possibly_damaging(0.8)	deleterious(0.05)	deleterious(0.646)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
CRYBG3	131544	genome.wustl.edu	37	3	97631113	97631113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153605.2	+1	validated	p.R755*	1.000	181	0%	176	42.6%	7	42.8%	-	-	-	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
MINA	84864	genome.wustl.edu	37	3	97686059	97686059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042533.1	-1	validated	p.D127Y	1.000	195	0%	280	33.6%	18	55.5%	benign(0.076)	tolerated(0.83)	neutral(0.006)	HMMPfam_Cupin_4,superfamily_Clavaminate synthase-like
GABRR3	200959	genome.wustl.edu	37	3	97705699	97705699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000329044	-1	known	p.S183L	0.000	150	0%	98	28.6%	0	-	benign(0.01)	tolerated(0.31)	neutral(0.028)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
OR5AC2	81050	genome.wustl.edu	37	3	97806054	97806054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054106.1	+1	provisional	p.E13G	0.053	225	0%	221	34.8%	0	-	benign(0.411)	deleterious(0.02)	deleterious(0.516)	superfamily_SSF81321
OR5H1	26341	genome.wustl.edu	37	3	97852124	97852124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005338.1	+1	provisional	p.N195H	0.272	183	0%	86	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR5H1	26341	genome.wustl.edu	37	3	97852289	97852289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005338.1	+1	provisional	p.L250V	0.000	340	0%	117	21.4%	0	-	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMPfam_7tm_1,superfamily_SSF81321
OR5H15	403274	genome.wustl.edu	37	3	97887583	97887583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005515.1	+1	provisional	p.L14F	0.953	117	0%	30	16.7%	0	-	possibly_damaging(0.884)	tolerated(0.05)	deleterious(0.690)	superfamily_SSF81321
OR5H6	79295	genome.wustl.edu	37	3	97983591	97983591	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005479.1	+1	provisional	p.E155*	0.179	178	0%	50	30%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5K4	403278	genome.wustl.edu	37	3	98072836	98072836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005517.1	+1	provisional	p.A47T	0.025	246	0%	100	24%	0	-	benign(0.04)	tolerated(0.56)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K4	403278	genome.wustl.edu	37	3	98072991	98072991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005517.1	+1	provisional	p.M98I	0.998	224	0%	112	33.9%	0	-	benign(0.024)	tolerated(0.65)	neutral(0.004)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K4	403278	genome.wustl.edu	37	3	98073124	98073124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005517.1	+1	provisional	p.R143W	0.994	180	0%	88	31.8%	0	-	possibly_damaging(0.893)	tolerated(0.29)	neutral(0.381)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K1	26339	genome.wustl.edu	37	3	98189084	98189084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004736.2	+1	provisional	p.L222I	0.133	280	0%	95	32.6%	0	-	benign(0.034)	tolerated(0.34)	neutral(0.025)	HMMPfam_7tm_1,superfamily_SSF81321
OR5K2	402135	genome.wustl.edu	37	3	98216707	98216707	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004737.1	+1	provisional	p.I61	0.997	296	0%	151	12.6%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5K2	402135	genome.wustl.edu	37	3	98217188	98217188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004737.1	+1	provisional	p.L222I	0.020	310	0%	104	30.8%	0	-	benign(0.062)	tolerated(0.25)	neutral(0.041)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5K2	402135	genome.wustl.edu	37	3	98217437	98217437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004737.1	+1	provisional	p.L305M	0.169	58	0%	36	33.3%	0	-	benign(0.003)	tolerated(0.45)	neutral(0.012)	superfamily_Family A G protein-coupled receptor-like
ST3GAL6	10402	genome.wustl.edu	37	3	98510824	98510824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006100.2	+1	provisional	p.S299Y	1.000	196	0%	92	29.3%	4	0%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	HMMPfam_Glyco_transf_29
FILIP1L	11259	genome.wustl.edu	37	3	99569013	99569013	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182909.2	-1	validated	p.E503*	1.000	201	0%	119	32.8%	5	0%	-	-	-	HMMPfam_CortBP2
TBC1D23	55773	genome.wustl.edu	37	3	100039796	100039796	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018309.2	+1	validated	p.E652*	1.000	112	0%	63	34.9%	12	66.6%	-	-	-	NULL
TOMM70A	9868	genome.wustl.edu	37	3	100096719	100096719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014820.3	-1	validated	p.E308*	1.000	223	0%	86	18.6%	27	0%	-	-	-	superfamily_SSF48452
GPR128	84873	genome.wustl.edu	37	3	100349554	100349554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032787.2	+1	validated	p.F79V	1.000	79	0%	27	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR128	84873	genome.wustl.edu	37	3	100374834	100374834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032787.2	+1	validated	p.E606D	0.055	151	0%	73	35.6%	0	-	possibly_damaging(0.858)	tolerated(0.37)	neutral(0.350)	HMMPfam_7tm_2
TFG	10342	genome.wustl.edu	37	3	100432653	100432653	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007565.1	+1	validated	p.R42*	0.752	81	0%	124	35.5%	26	15.3%	-	-	-	HMMPfam_PB1,HMMSmart_PB1,superfamily_SSF54277
IMPG2	50939	genome.wustl.edu	37	3	100964726	100964726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016247.2	-1	validated	p.S488Y	1.000	90	0%	26	23.1%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
IMPG2	50939	genome.wustl.edu	37	3	100976371	100976371	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016247.2	-1	validated	e10+2	1.000	61	0%	20	35%	0	-	-	-	-	-
ZBTB11	27107	genome.wustl.edu	37	3	101390168	101390168	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014415.3	-1	validated	p.K195T	1.000	141	0%	193	36.3%	11	45.4%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_BTB/POZ_fold
ZBTB11	27107	genome.wustl.edu	37	3	101391037	101391037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014415.3	-1	validated	p.D111Y	1.000	186	0%	255	26.3%	11	36.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RPL24	6152	genome.wustl.edu	37	3	101404675	101404675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000986.3	-1	reviewed	p.K60R	1.000	86	0%	113	29.2%	1991	45.8%	possibly_damaging(0.848)	tolerated(0.14)	deleterious(0.575)	HMMPfam_Ribosomal_L24e
FAM55C	91775	genome.wustl.edu	37	3	101525962	101525962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134456.1	+1	validated	p.R305K	0.000	248	0%	114	28.1%	4	25%	benign(0)	tolerated(0.95)	-	NULL
CBLB	868	genome.wustl.edu	37	3	105470368	105470368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170662.3	-1	validated	p.D221Y	1.000	109	0.9%	123	24.4%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cbl_N2,superfamily_EF-hand
CCDC54	84692	genome.wustl.edu	37	3	107097382	107097382	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032600.2	+1	provisional	p.G316	0.210	161	0%	70	30%	0	-	-	-	-	NULL
BBX	56987	genome.wustl.edu	37	3	107517406	107517406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142568.1	+1	validated	p.V797A	0.884	104	0%	56	25%	12	41.6%	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
HHLA2	11148	genome.wustl.edu	37	3	108072594	108072594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007072.2	+1	provisional	p.V129L	0.000	91	0%	36	27.8%	0	-	benign(0.004)	tolerated(0.67)	neutral(0.003)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
HHLA2	11148	genome.wustl.edu	37	3	108076877	108076877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007072.2	+1	provisional	p.N291S	0.019	117	0%	65	43.1%	0	-	possibly_damaging(0.873)	tolerated(0.63)	neutral(0.343)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
MYH15	22989	genome.wustl.edu	37	3	108124188	108124188	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014981.1	-1	validated	p.F1598C	0.022	75	0%	41	22%	0	-	possibly_damaging(0.881)	tolerated(0.17)	neutral(0.403)	HMMPfam_Myosin_tail_1
MYH15	22989	genome.wustl.edu	37	3	108163624	108163624	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014981.1	-1	validated	p.E860*	0.998	134	0%	55	32.7%	1	0%	-	-	-	NULL
MYH15	22989	genome.wustl.edu	37	3	108224633	108224633	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014981.1	-1	validated	p.I64	0.874	195	0%	120	36.7%	0	-	-	-	-	HMMPfam_Myosin_N
DZIP3	9666	genome.wustl.edu	37	3	108361346	108361346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014648.3	+1	validated	p.K376Q	1.000	60	0%	13	53.8%	3	66.6%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
DZIP3	9666	genome.wustl.edu	37	3	108367791	108367791	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014648.3	+1	validated	p.K663	1.000	74	0%	51	29.4%	2	100%	-	-	-	NULL
DZIP3	9666	genome.wustl.edu	37	3	108388553	108388553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014648.3	+1	validated	p.D817Y	1.000	246	0%	89	14.6%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GUCA1C	9626	genome.wustl.edu	37	3	108627054	108627054	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005459.3	-1	validated	p.E149*	0.992	110	0%	83	28.9%	0	-	-	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
MORC1	27136	genome.wustl.edu	37	3	108690197	108690197	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014429.3	-1	reviewed	p.E844*	0.932	184	0%	82	29.3%	0	-	-	-	-	NULL
DPPA4	55211	genome.wustl.edu	37	3	109049483	109049483	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018189.3	-1	validated	p.V189	0.000	78	0%	55	41.8%	0	-	-	-	-	NULL
DPPA4	55211	genome.wustl.edu	37	3	109050630	109050630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018189.3	-1	validated	p.K114T	0.996	111	0%	101	16.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DPPA4	55211	genome.wustl.edu	37	3	109052826	109052826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018189.3	-1	validated	p.E23D	0.002	215	0%	177	29.9%	0	-	benign(0.242)	tolerated(0.05)	neutral(0.370)	NULL
PVRL3	25945	genome.wustl.edu	37	3	110830980	110830980	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000486596	+1	known	p.D88N	0.964	51	0%	21	19%	4	25%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PVRL3	25945	genome.wustl.edu	37	3	110852754	110852754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015480.1	+1	provisional	p.D448Y	1.000	93	0%	112	35.7%	8	50%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
CD96	10225	genome.wustl.edu	37	3	111368615	111368615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198196.2	+1	reviewed	p.E574K	0.369	145	0%	76	28.9%	7	0%	benign(0.18)	tolerated(0.3)	neutral(0.045)	NULL
PLCXD2	257068	genome.wustl.edu	37	3	111432894	111432894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153268.3	+1	validated	p.V262A	1.000	54	0%	18	38.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PLC-like_Pdiesterase_TIM-brl
PLCXD2	257068	genome.wustl.edu	37	3	111439671	111439671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000312791	+1	known	p.A323V	0.992	177	0%	70	27.1%	0	-	-	-	-	superfamily_PLC-like phosphodiesterases
PHLDB2	90102	genome.wustl.edu	37	3	111604116	111604116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134438.1	+1	validated	p.L398I	1.000	98	0%	39	28.2%	1	0%	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	NULL
TAGLN3	29114	genome.wustl.edu	37	3	111732429	111732429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000494932	+1	known	p.T118M	0.000	24	0.000	8	0.500	1	0%	unknown(0)	-	-	NULL
TMPRSS7	344805	genome.wustl.edu	37	3	111766737	111766737	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042575.2	+1	validated	p.I168	0.000	104	0%	39	33.3%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SLC9A10	285335	genome.wustl.edu	37	3	111887814	111887814	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183061.1	-1	validated	p.I1049	0.879	161	0%	102	24.5%	0	-	-	-	-	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111923110	111923110	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183061.1	-1	validated	p.V709	0.000	83	0%	48	33.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SLC9A10	285335	genome.wustl.edu	37	3	111983102	111983102	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183061.1	-1	validated	p.E323*	0.434	106	0%	51	31.4%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
BTLA	151888	genome.wustl.edu	37	3	112190059	112190059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181780.3	-1	validated	p.G183R	1.000	148	0%	108	23.1%	5	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
CD200R1L	344807	genome.wustl.edu	37	3	112538669	112538669	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008784.2	-1	validated	p.V251	0.000	93	0%	41	31.7%	0	-	-	-	-	NULL
CD200R1L	344807	genome.wustl.edu	37	3	112546463	112546463	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008784.2	-1	validated	p.N61H	0.000	191	0%	112	27.7%	1	0%	possibly_damaging(0.922)	tolerated(0.06)	deleterious(0.694)	superfamily_Immunoglobulin
C3orf17	25871	genome.wustl.edu	37	3	112724779	112724779	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015412.3	-1	validated	p.T436	0.996	205	0%	72	18.1%	32	34.3%	-	-	-	NULL
WDR52	55779	genome.wustl.edu	37	3	113145025	113145025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018338.3	-1	validated	p.S118L	0.871	155	0%	101	29.7%	1	0%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	NULL
NAA50	80218	genome.wustl.edu	37	3	113440761	113440761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025146.1	-1	provisional	p.S119L	1.000	230	0%	95	23.2%	107	46.7%	benign(0.024)	tolerated(0.09)	neutral(0.297)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
ATP6V1A	523	genome.wustl.edu	37	3	113503590	113503590	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001690.2	+1	reviewed	p.E158	0.997	126	0%	95	24.2%	36	33.3%	-	-	-	NULL
DRD3	1814	genome.wustl.edu	37	3	113847743	113847743	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000796.3	-1	reviewed	p.C341	1.000	65	0%	35	22.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DRD3	1814	genome.wustl.edu	37	3	113850240	113850240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000796.3	-1	reviewed	p.S244Y	1.000	189	0%	101	40.6%	0	-	possibly_damaging(0.942)	tolerated(0.05)	deleterious(0.732)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGAP31	57514	genome.wustl.edu	37	3	119102007	119102007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020754.2	+1	reviewed	p.E206*	1.000	122	0%	99	29.3%	3	0%	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
ARHGAP31	57514	genome.wustl.edu	37	3	119112338	119112338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020754.2	+1	reviewed	p.K302N	1.000	132	0%	88	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119128401	119128401	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020754.2	+1	reviewed	p.G568	0.000	57	0%	40	30%	3	33.3%	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119134243	119134243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020754.2	+1	reviewed	p.R1156M	0.000	92	0%	51	37.3%	3	0%	benign(0.163)	deleterious(0)	neutral(0.459)	NULL
TMEM39A	55254	genome.wustl.edu	37	3	119171324	119171324	+	Silent	SNP	C	C	T	rs188443867	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018266.1	-1	provisional	p.A130	0.835	87	0%	54	29.6%	20	25%	-	-	-	HMMPfam_Tmp39
TIMMDC1	51300	genome.wustl.edu	37	3	119236114	119236114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016589.3	+1	validated	p.R220I	0.915	103	0%	45	44.4%	75	41.3%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CD80	941	genome.wustl.edu	37	3	119263442	119263442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005191.3	-1	validated	p.A125T	0.000	81	0%	56	28.6%	0	-	benign(0.182)	tolerated(0.45)	neutral(0.029)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD80	941	genome.wustl.edu	37	3	119263526	119263526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005191.3	-1	validated	p.N97H	0.001	132	0%	64	26.6%	2	0%	possibly_damaging(0.608)	deleterious(0.01)	deleterious(0.616)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD80	941	genome.wustl.edu	37	3	119276519	119276519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005191.3	-1	validated	p.F19L	0.000	135	0%	77	29.9%	1	0%	benign(0.095)	tolerated(1)	neutral(0.007)	NULL
C3orf15	89876	genome.wustl.edu	37	3	119451165	119451165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033364.3	+1	validated	p.R348I	0.992	80	0%	65	29.2%	0	-	possibly_damaging(0.657)	tolerated(0.14)	deleterious(0.481)	NULL
C3orf15	89876	genome.wustl.edu	37	3	119458111	119458111	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033364.3	+1	validated	p.E491*	1.000	132	0%	69	30.4%	0	-	-	-	-	NULL
C3orf15	89876	genome.wustl.edu	37	3	119466040	119466040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033364.3	+1	validated	p.E661*	0.997	81	0%	85	14.1%	0	-	-	-	-	NULL
NR1I2	8856	genome.wustl.edu	37	3	119526160	119526160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022002.2	+1	reviewed	p.E60D	0.015	147	0%	217	22.6%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
GSK3B	2932	genome.wustl.edu	37	3	119666150	119666150	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002093.3	-1	reviewed	p.R111*	1.000	146	0%	77	27.3%	7	14.2%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GPR156	165829	genome.wustl.edu	37	3	119905556	119905556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153002.2	-1	validated	p.W183*	1.000	67	0%	29	31%	0	-	-	-	-	HMMPfam_7tm_3
FSTL1	11167	genome.wustl.edu	37	3	120129830	120129830	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007085.4	-1	reviewed	p.E100	1.000	81	0%	126	30.2%	140	34.2%	-	-	-	NULL
STXBP5L	9515	genome.wustl.edu	37	3	120628449	120628449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014980.2	+1	validated	p.K8N	1.000	136	0%	231	25.5%	0	-	probably_damaging(0.994)	tolerated(0.36)	deleterious(0.472)	NULL
STXBP5L	9515	genome.wustl.edu	37	3	120957827	120957827	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014980.2	+1	validated	p.I398	1.000	58	0%	35	17.1%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
STXBP5L	9515	genome.wustl.edu	37	3	120973841	120973841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014980.2	+1	validated	p.P514Q	1.000	73	0%	90	34.4%	0	-	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	HMMSmart_SM00320,superfamily_WD40 repeat-like
STXBP5L	9515	genome.wustl.edu	37	3	121097679	121097679	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014980.2	+1	validated	p.R789*	1.000	67	0%	38	31.6%	0	-	-	-	-	NULL
STXBP5L	9515	genome.wustl.edu	37	3	121126344	121126344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014980.2	+1	validated	p.H972N	1.000	145	0%	57	33.3%	0	-	possibly_damaging(0.837)	tolerated(0.5)	neutral(0.330)	NULL
STXBP5L	9515	genome.wustl.edu	37	3	121134798	121134798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014980.2	+1	validated	p.F1094S	1.000	142	0%	75	24%	0	-	benign(0.121)	deleterious(0.01)	neutral(0.415)	NULL
POLQ	10721	genome.wustl.edu	37	3	121207703	121207703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199420.3	-1	validated	p.V1359I	0.000	240	0%	135	34.1%	1	100%	benign(0.029)	tolerated(0.08)	neutral(0.301)	NULL
POLQ	10721	genome.wustl.edu	37	3	121208058	121208058	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199420.3	-1	validated	p.I1240	0.000	209	0%	149	34.9%	4	50%	-	-	-	NULL
POLQ	10721	genome.wustl.edu	37	3	121209199	121209199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199420.3	-1	validated	p.R860Q	1.000	140	0%	79	25.3%	1	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
FBXO40	51725	genome.wustl.edu	37	3	121341741	121341741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016298.3	+1	validated	p.P489S	1.000	92	0%	60	28.3%	0	-	benign(0.09)	tolerated(0.66)	neutral(0.009)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121413677	121413677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004487.3	-1	validated	p.K1893T	0.036	164	0%	190	36.3%	15	40%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121415404	121415404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004487.3	-1	validated	p.E1317D	1.000	146	0%	75	32%	10	30%	benign(0.029)	deleterious(0.04)	neutral(0.350)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121415860	121415860	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004487.3	-1	validated	p.K1165N	0.410	181	0%	189	29.1%	11	63.6%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	superfamily_Prefoldin
GOLGB1	2804	genome.wustl.edu	37	3	121417216	121417216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004487.3	-1	validated	p.E713D	1.000	147	0%	123	34.1%	3	0%	benign(0.003)	deleterious(0.03)	neutral(0.364)	NULL
EAF2	55840	genome.wustl.edu	37	3	121591449	121591449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018456.4	+1	validated	p.S184R	1.000	78	0%	38	39.5%	17	35.2%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
SLC15A2	6565	genome.wustl.edu	37	3	121634526	121634526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021082.3	+1	validated	p.M228T	1.000	133	0%	79	35.4%	14	57.1%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_PTR2,superfamily_MFS_gen_substrate_transporter
CD86	942	genome.wustl.edu	37	3	121825172	121825172	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000478741	+1	known	p.E172*	0.001	102	0%	43	27.9%	13	0%	benign(0.177)	tolerated(0.11)	neutral(0.288)	NULL
CASR	846	genome.wustl.edu	37	3	121976107	121976107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000388.3	+1	reviewed	p.S122Y	1.000	105	0%	59	23.7%	0	-	probably_damaging(0.992)	tolerated(0.2)	deleterious(0.496)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CASR	846	genome.wustl.edu	37	3	121980485	121980485	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000388.3	+1	reviewed	p.I201	0.648	84	0%	65	23.1%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CASR	846	genome.wustl.edu	37	3	121980561	121980561	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000388.3	+1	reviewed	p.R227*	1.000	102	1%	69	34.8%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
WDR5B	54554	genome.wustl.edu	37	3	122134001	122134001	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019069.3	-1	reviewed	p.S125	1.000	154	0%	116	25.9%	4	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KPNA1	3836	genome.wustl.edu	37	3	122145714	122145714	+	RNA	SNP	C	C	T	rs139115078	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026698.1	-1	reviewed	NULL	1.000	58	0%	24	45.8%	40	30%	-	-	-	-
KPNA1	3836	genome.wustl.edu	37	3	122146540	122146540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002264.3	-1	reviewed	p.I425T	1.000	84	0%	58	32.8%	29	55.1%	benign(0.104)	deleterious(0.01)	neutral(0.414)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
KPNA1	3836	genome.wustl.edu	37	3	122172805	122172805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002264.3	-1	reviewed	p.S159Y	1.000	168	0%	78	20.5%	20	20%	benign(0.293)	deleterious(0)	deleterious(0.535)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PARP9	83666	genome.wustl.edu	37	3	122255139	122255139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031458.2	-1	validated	p.K687N	0.958	167	0%	110	30.9%	59	32.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PARP,superfamily_ADP-ribosylation
DTX3L	151636	genome.wustl.edu	37	3	122287954	122287954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138287.3	+1	validated	p.E340K	0.000	60	0%	65	35.4%	13	46.1%	benign(0.002)	tolerated(0.09)	neutral(0.296)	NULL
PARP15	165631	genome.wustl.edu	37	3	122354899	122354899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113523.1	+1	validated	p.F663L	0.834	166	0%	66	28.8%	5	0%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_PARP,superfamily_ADP-ribosylation
PARP14	54625	genome.wustl.edu	37	3	122419063	122419063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017554.2	+1	validated	p.F554L	0.334	84	0%	42	28.6%	7	85.7%	benign(0.003)	tolerated(1)	-	NULL
HSPBAP1	79663	genome.wustl.edu	37	3	122496715	122496715	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024610.4	-1	provisional	p.E35*	1.000	208	0%	322	31.7%	9	33.3%	-	-	-	superfamily_Clavaminate synthase-like
SEMA5B	54437	genome.wustl.edu	37	3	122632413	122632413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031702.2	-1	validated	p.E750K	1.000	15	0%	20	30%	1	100%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SEMA5B	54437	genome.wustl.edu	37	3	122642463	122642463	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031702.2	-1	validated	e9+1	1.000	169	0%	311	30.2%	0	-	-	-	-	-
ADCY5	111	genome.wustl.edu	37	3	123014951	123014951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183357.1	-1	validated	p.D1015N	1.000	36	0%	58	24.1%	7	71.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYLK	4638	genome.wustl.edu	37	3	123426687	123426687	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053025.3	-1	reviewed	p.F768	0.143	64	0%	57	19.3%	3	66.6%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
KALRN	8997	genome.wustl.edu	37	3	124053223	124053223	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024660.3	+1	reviewed	p.L508	0.999	22	0%	13	30.8%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124386002	124386002	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000354186	+1	known	p.S2193Y	1.000	142	0%	190	33.2%	0	-	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KALRN	8997	genome.wustl.edu	37	3	124438127	124438127	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000354186	+1	known	p.G2893*	1.000	47	0%	55	23.6%	2	0%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MUC13	56667	genome.wustl.edu	37	3	124627180	124627180	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033049.2	-1	validated	p.T450	0.000	95	0%	68	35.3%	0	-	-	-	-	NULL
ALDH1L1	10840	genome.wustl.edu	37	3	125822642	125822642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012190.2	-1	reviewed	p.E901K	0.999	50	0%	81	35.8%	2	50%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	superfamily_Aldehyde_DH/Histidinol_DH
KLF15	28999	genome.wustl.edu	37	3	126062651	126062651	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014079.3	-1	validated	p.F390	1.000	32	0%	59	30.5%	14	42.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PLXNA1	5361	genome.wustl.edu	37	3	126747140	126747140	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032242.3	+1	validated	p.G1519	0.717	16	0%	33	18.2%	69	15.9%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
ACAD9	28976	genome.wustl.edu	37	3	128612493	128612493	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014049.4	+1	reviewed	p.E114*	1.000	60	0%	41	26.8%	18	11.1%	-	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
ACAD9	28976	genome.wustl.edu	37	3	128622958	128622958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014049.4	+1	reviewed	p.E338*	1.000	88	0%	143	26.6%	25	8%	-	-	-	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
ACAD9	28976	genome.wustl.edu	37	3	128627037	128627037	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014049.4	+1	reviewed	p.E430*	1.000	56	0%	77	24.7%	51	11.7%	-	-	-	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
MBD4	8930	genome.wustl.edu	37	3	129156756	129156756	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003925.1	-1	reviewed	p.E48*	0.216	270	0%	424	26.4%	17	35.2%	-	-	-	NULL
COL6A5	256076	genome.wustl.edu	37	3	130107607	130107607	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153264.5	+1	validated	p.L682	0.148	63	0%	24	33.3%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130113971	130113971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153264.5	+1	validated	p.K1077N	0.180	135	0%	51	27.5%	0	-	possibly_damaging(0.655)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130122471	130122471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153264.5	+1	validated	p.G1416S	1.000	148	0%	97	35.1%	0	-	probably_damaging(1)	-	-	HMMPfam_Collagen
COL6A5	256076	genome.wustl.edu	37	3	130141609	130141609	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153264.5	+1	validated	p.G1695*	1.000	223	0%	63	36.5%	0	-	-	-	-	HMMPfam_Collagen
COL6A5	256076	genome.wustl.edu	37	3	130159276	130159276	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153264.5	+1	validated	p.F2032V	0.352	108	0%	44	34.1%	0	-	probably_damaging(0.978)	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A6	131873	genome.wustl.edu	37	3	130289671	130289671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102608.1	+1	provisional	p.R804L	0.998	102	0%	62	25.8%	0	-	probably_damaging(0.999)	-	-	superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130300439	130300439	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102608.1	+1	provisional	p.V1194	1.000	198	0%	120	41.7%	0	-	-	-	-	HMMSmart_SM00327,superfamily_vWA-like
COL6A6	131873	genome.wustl.edu	37	3	130368196	130368196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102608.1	+1	provisional	p.E1841D	0.052	47	0%	36	19.4%	0	-	benign(0.001)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ATP2C1	27032	genome.wustl.edu	37	3	130699426	130699426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001486.1	+1	reviewed	p.A581D	1.000	202	0%	64	31.2%	84	42.8%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP2C1	27032	genome.wustl.edu	37	3	130714928	130714928	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001486.1	+1	reviewed	p.K700T	1.000	90	0%	55	36.4%	92	44.5%	benign(0.17)	tolerated(0.11)	neutral(0.287)	superfamily_Calcium ATPase transmembrane domain M
ASTE1	28990	genome.wustl.edu	37	3	130743962	130743962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014065.2	-1	validated	p.F63L	1.000	121	0%	152	34.9%	3	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_XPG_N,superfamily_SSF88723
NEK11	79858	genome.wustl.edu	37	3	130873920	130873920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024800.4	+1	reviewed	p.K306R	0.786	262	0%	122	32.8%	1	100%	possibly_damaging(0.595)	tolerated(0.16)	neutral(0.265)	superfamily_Kinase_like
DNAJC13	23317	genome.wustl.edu	37	3	132176120	132176120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015268.3	+1	validated	p.E453K	1.000	304	0%	134	25.4%	6	50%	possibly_damaging(0.812)	deleterious(0.02)	deleterious(0.689)	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132193929	132193929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015268.3	+1	validated	p.E815D	1.000	81	0%	128	38.3%	4	25%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132203454	132203454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015268.3	+1	validated	p.R1069W	1.000	145	0%	74	36.5%	8	50%	possibly_damaging(0.855)	deleterious(0.03)	deleterious(0.695)	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132209842	132209842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015268.3	+1	validated	p.E1190D	1.000	64	0%	28	14.3%	1	0%	benign(0.218)	deleterious(0.02)	neutral(0.405)	superfamily_ARM repeat
DNAJC13	23317	genome.wustl.edu	37	3	132215452	132215452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015268.3	+1	validated	p.E1367D	0.998	120	0%	59	30.5%	4	0%	-	-	-	superfamily_ARM repeat
CCRL1	51554	genome.wustl.edu	37	3	132319269	132319269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016557.2	+1	reviewed	p.D10Y	0.999	68	0%	38	36.8%	0	-	benign(0.079)	deleterious(0.02)	neutral(0.389)	superfamily_SSF81321
CCRL1	51554	genome.wustl.edu	37	3	132319500	132319500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016557.2	+1	reviewed	p.D87Y	1.000	231	0%	98	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
ACAD11	84129	genome.wustl.edu	37	3	132345549	132345549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032169.4	-1	validated	p.L395I	0.471	226	0%	103	34%	13	61.5%	benign(0.004)	tolerated(0.08)	neutral(0.300)	superfamily_Acyl-CoA dehydrogenase NM domain-like
UBA5	79876	genome.wustl.edu	37	3	132387767	132387767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024818.3	+1	reviewed	p.L135M	0.655	182	0%	137	24.8%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ThiF,superfamily_MoeB
NPHP3	27031	genome.wustl.edu	37	3	132415580	132415580	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153240.3	-1	reviewed	p.I722	0.000	102	0%	94	28.7%	6	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
BFSP2	8419	genome.wustl.edu	37	3	133185786	133185786	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003571.2	+1	reviewed	p.E336*	1.000	20	0%	27	33.3%	5	0%	-	-	-	HMMPfam_Filament
TOPBP1	11073	genome.wustl.edu	37	3	133329866	133329866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007027.3	-1	reviewed	p.Q1385H	1.000	287	0%	98	35.7%	33	21.2%	benign(0.234)	tolerated(0.15)	neutral(0.265)	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133331328	133331328	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007027.3	-1	reviewed	p.R1314*	1.000	59	0%	46	32.6%	35	17.1%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
TF	7018	genome.wustl.edu	37	3	133473407	133473407	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001063.3	+1	reviewed	p.R132*	0.068	80	0%	90	30%	1	0%	-	-	-	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
SRPRB	58477	genome.wustl.edu	37	3	133526596	133526596	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021203.3	+1	reviewed	p.T86S	1.000	216	0%	341	27.9%	93	60.2%	benign(0.094)	tolerated(0.56)	neutral(0.013)	HMMPfam_SRPRB,superfamily_P-loop containing nucleoside triphosphate hydrolases
SRPRB	58477	genome.wustl.edu	37	3	133534544	133534544	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021203.3	+1	reviewed	p.S174*	0.450	120	0%	107	23.4%	81	4.9%	-	-	-	HMMPfam_SRPRB,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP63	80254	genome.wustl.edu	37	3	134267944	134267944	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025180.3	+1	reviewed	p.E370*	1.000	95	0%	92	25%	7	57.1%	-	-	-	NULL
EPHB1	2047	genome.wustl.edu	37	3	134920469	134920469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004441.4	+1	reviewed	p.D762N	1.000	119	0%	61	18%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MSL2	55167	genome.wustl.edu	37	3	135871459	135871459	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018133.3	-1	validated	p.E88	1.000	252	0.4%	216	26.9%	23	47.8%	-	-	-	superfamily_SSF57850
DZIP1L	199221	genome.wustl.edu	37	3	137781810	137781810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173543.2	-1	validated	p.D718Y	0.996	85	0%	58	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DZIP1L	199221	genome.wustl.edu	37	3	137811348	137811348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173543.2	-1	validated	p.K249N	1.000	352	0.3%	249	26.1%	1	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
ESYT3	83850	genome.wustl.edu	37	3	138184183	138184183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031913.3	+1	validated	p.F363L	0.820	82	0%	67	16.4%	0	-	possibly_damaging(0.76)	tolerated(0.33)	neutral(0.305)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CEP70	80321	genome.wustl.edu	37	3	138216877	138216877	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024491.2	-1	validated	p.I576	1.000	226	0%	148	30.4%	15	73.3%	-	-	-	NULL
CEP70	80321	genome.wustl.edu	37	3	138256090	138256090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024491.2	-1	validated	p.R189C	0.478	198	0%	185	33.5%	16	81.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CEP70	80321	genome.wustl.edu	37	3	138256147	138256147	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024491.2	-1	validated	p.E170*	0.930	209	0%	192	32.8%	11	9%	-	-	-	NULL
PIK3CB	5291	genome.wustl.edu	37	3	138417901	138417901	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006219.1	-1	provisional	p.E540*	1.000	67	0%	25	32%	8	25%	-	-	-	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
PIK3CB	5291	genome.wustl.edu	37	3	138453578	138453578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006219.1	-1	provisional	p.K290N	1.000	189	0%	113	38.1%	6	66.6%	benign(0.268)	tolerated(0.49)	neutral(0.039)	superfamily_SSF54236
PRR23B	389151	genome.wustl.edu	37	3	138739092	138739092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013650.2	-1	validated	p.E138K	0.000	51	0%	72	38.9%	0	-	benign(0.14)	tolerated(0.06)	neutral(0.335)	HMMPfam_DUF2476
MRPS22	56945	genome.wustl.edu	37	3	139074617	139074617	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020191.2	+1	reviewed	p.G324	0.132	87	0%	55	27.3%	53	37.7%	-	-	-	NULL
RBP2	5948	genome.wustl.edu	37	3	139195245	139195245	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004164.2	-1	reviewed	p.G19	1.000	285	0%	112	25.9%	0	-	-	-	-	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Lipocalins
CLSTN2	64084	genome.wustl.edu	37	3	139894845	139894845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022131.2	+1	validated	p.E54D	1.000	111	0%	68	26.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin-like
TRIM42	287015	genome.wustl.edu	37	3	140407017	140407017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152616.3	+1	reviewed	p.R498H	0.106	101	0%	62	25.8%	0	-	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
ACPL2	92370	genome.wustl.edu	37	3	140997252	140997252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037172.1	+1	validated	p.D50N	0.967	123	0%	98	35.7%	9	33.3%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ZBTB38	253461	genome.wustl.edu	37	3	141161945	141161945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080412.2	+1	validated	p.E239*	0.068	43	0%	20	35%	17	41.1%	-	-	-	NULL
TFDP2	7029	genome.wustl.edu	37	3	141697425	141697425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006286.4	-1	reviewed	p.N91K	1.000	222	0%	158	30.4%	15	53.3%	benign(0.3)	tolerated(0.13)	neutral(0.346)	HMMPfam_E2F_TDP,superfamily_SSF46785
PLS1	5357	genome.wustl.edu	37	3	142389866	142389866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145319.1	+1	reviewed	p.S89N	1.000	120	0%	84	29.8%	9	22.2%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	superfamily_SSF47473
TRPC1	7220	genome.wustl.edu	37	3	142496494	142496494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003304.4	+1	validated	p.R184Q	1.000	198	0%	80	28.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_TRP_2
TRPC1	7220	genome.wustl.edu	37	3	142499853	142499853	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003304.4	+1	validated	p.I280	1.000	71	0%	25	32%	0	-	-	-	-	NULL
TRPC1	7220	genome.wustl.edu	37	3	142525070	142525070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003304.4	+1	validated	p.R758I	1.000	61	0%	18	22.2%	0	-	possibly_damaging(0.887)	deleterious(0.01)	deleterious(0.752)	NULL
U2SURP	23350	genome.wustl.edu	37	3	142747332	142747332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080415.1	+1	provisional	p.S485Y	1.000	215	0%	65	40%	32	28.1%	possibly_damaging(0.869)	deleterious(0.01)	deleterious(0.743)	superfamily_Surp module (SWAP domain Pfam 01805)
SLC9A9	285195	genome.wustl.edu	37	3	142987730	142987730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173653.3	-1	reviewed	p.P566H	0.995	155	0%	103	10.7%	4	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SLC9A9	285195	genome.wustl.edu	37	3	143186026	143186026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173653.3	-1	reviewed	p.R441Q	1.000	88	0%	59	40.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_H_Exchanger
SLC9A9	285195	genome.wustl.edu	37	3	143297563	143297563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173653.3	-1	reviewed	p.S253F	1.000	110	0%	61	36.1%	0	-	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_Na_H_Exchanger
PLOD2	5352	genome.wustl.edu	37	3	145796953	145796953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182943.2	-1	reviewed	p.R484C	1.000	177	0%	108	33.3%	57	52.6%	possibly_damaging(0.938)	tolerated(0.08)	deleterious(0.683)	NULL
PLSCR4	57088	genome.wustl.edu	37	3	145924460	145924460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020353.2	-1	validated	p.F69L	0.646	68	0%	27	33.3%	3	66.6%	unknown(0)	tolerated(0.43)	-	NULL
PLSCR2	57047	genome.wustl.edu	37	3	146173094	146173094	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020359.1	-1	provisional	p.R85*	0.035	145	0.7%	78	29.5%	0	-	-	-	-	HMMPfam_Scramblase
PLSCR2	57047	genome.wustl.edu	37	3	146177734	146177734	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000497985	-1	known	p.I59	0.001	184	0%	108	25%	1	100%	-	-	-	NULL
PLSCR1	5359	genome.wustl.edu	37	3	146243416	146243416	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000463777	-1	known	p.S38*	1.000	113	0%	59	23.7%	27	37%	-	-	-	NULL
PLSCR5	389158	genome.wustl.edu	37	3	146309630	146309630	+	Silent	SNP	G	G	A	rs182438758	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085420.1	-1	validated	p.Y164	1.000	101	0%	28	28.6%	0	-	-	-	-	HMMPfam_Scramblase
ZIC4	84107	genome.wustl.edu	37	3	147109008	147109008	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000383075	-1	known	p.F238	1.000	11	0%	26	53.8%	38	10.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZIC4	84107	genome.wustl.edu	37	3	147114000	147114000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000383075	-1	known	p.A109	0.702	26	0%	42	35.7%	38	26.3%	-	-	-	NULL
CPB1	1360	genome.wustl.edu	37	3	148545810	148545810	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001871.2	+1	reviewed	p.N31	0.000	147	0%	62	32.3%	0	-	-	-	-	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
CPA3	1359	genome.wustl.edu	37	3	148600364	148600364	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001870.2	+1	reviewed	p.F254V	1.000	86	0%	43	23.3%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
HLTF	6596	genome.wustl.edu	37	3	148757852	148757852	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003071.3	-1	reviewed	p.K823T	0.890	256	0%	250	19.6%	24	45.8%	benign(0.15)	tolerated(0.56)	neutral(0.019)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HLTF	6596	genome.wustl.edu	37	3	148793778	148793778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003071.3	-1	reviewed	p.K95N	1.000	226	0.4%	142	33.8%	12	58.3%	possibly_damaging(0.893)	tolerated(0.27)	neutral(0.385)	HMMPfam_HIRAN
HPS3	84343	genome.wustl.edu	37	3	148872896	148872896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032383.3	+1	reviewed	p.S468L	1.000	170	0%	56	33.9%	10	30%	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	NULL
CP	1356	genome.wustl.edu	37	3	148916184	148916184	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000096.3	-1	reviewed	p.K561	0.963	176	0%	107	31.8%	38	31.5%	-	-	-	superfamily_Cupredoxins
TM4SF4	7104	genome.wustl.edu	37	3	149193692	149193692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004617.2	+1	reviewed	p.R86Q	0.993	166	0%	115	27.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_L6_membrane
PFN2	5217	genome.wustl.edu	37	3	149686331	149686331	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002628.4	-1	reviewed	p.E47*	1.000	118	0%	189	31.2%	157	12.7%	-	-	-	HMMPfam_Profilin,HMMSmart_SM00392,superfamily_Profilin (actin-binding protein)
P2RY14	9934	genome.wustl.edu	37	3	150931428	150931428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001081455.1	-1	reviewed	p.S226L	0.024	148	0%	78	43.6%	0	-	benign(0.177)	tolerated(0.25)	neutral(0.053)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR87	53836	genome.wustl.edu	37	3	151012288	151012288	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023915.3	-1	validated	p.K249T	0.968	189	0%	89	32.6%	1	0%	benign(0.02)	deleterious(0.01)	neutral(0.407)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR87	53836	genome.wustl.edu	37	3	151012744	151012744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023915.3	-1	validated	p.R97Q	0.240	153	0%	61	24.6%	0	-	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MED12L	116931	genome.wustl.edu	37	3	151112567	151112567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053002.4	+1	reviewed	p.S1876L	0.817	79	0%	37	32.4%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151164891	151164891	+	Nonsense_Mutation	SNP	C	C	A	rs35983399	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178822.4	-1	validated	p.E960*	0.000	141	0%	133	45.9%	0	-	-	-	-	NULL
IGSF10	285313	genome.wustl.edu	37	3	151165903	151165903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178822.4	-1	validated	p.K622N	0.534	197	0%	146	24.7%	0	-	probably_damaging(0.99)	tolerated(0.18)	deleterious(0.497)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
AADACL2	344752	genome.wustl.edu	37	3	151451863	151451863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207365.3	+1	validated	p.L14I	0.000	459	0%	212	32.5%	0	-	unknown(0)	tolerated(0.57)	-	NULL
AADACL2	344752	genome.wustl.edu	37	3	151475326	151475326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207365.3	+1	validated	p.R384C	0.000	72	0%	43	27.9%	0	-	benign(0.404)	deleterious(0.04)	deleterious(0.479)	superfamily_alpha/beta-Hydrolases
AADAC	13	genome.wustl.edu	37	3	151542456	151542456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001086.2	+1	reviewed	p.R146K	1.000	183	0%	89	32.6%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
SUCNR1	56670	genome.wustl.edu	37	3	151599310	151599310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033050.4	+1	reviewed	p.L327F	0.000	36	0%	19	57.9%	0	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
ARHGEF26	26084	genome.wustl.edu	37	3	153905608	153905608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015595.3	+1	validated	p.R541Q	0.979	83	0%	46	28.3%	1	0%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
GPR149	344758	genome.wustl.edu	37	3	154147299	154147299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001038705.1	-1	provisional	p.L36I	0.503	59	0%	118	34.7%	0	-	benign(0.243)	deleterious(0)	deleterious(0.469)	NULL
PLCH1	23007	genome.wustl.edu	37	3	155222389	155222389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130960.1	-1	validated	p.K541N	1.000	178	0%	132	34.1%	9	55.5%	benign(0.119)	deleterious(0.02)	neutral(0.393)	superfamily_PLC-like phosphodiesterases
PLCH1	23007	genome.wustl.edu	37	3	155393822	155393822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130960.1	-1	validated	p.D3N	1.000	160	0%	60	18.3%	0	-	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	NULL
SLC33A1	9197	genome.wustl.edu	37	3	155551733	155551733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004733.2	-1	reviewed	p.P354H	1.000	136	0%	91	24.2%	18	61.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
KCNAB1	7881	genome.wustl.edu	37	3	156175302	156175302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172160.2	+1	reviewed	p.E140K	0.995	200	0.5%	58	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
TIPARP	25976	genome.wustl.edu	37	3	156396356	156396356	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015508.4	+1	reviewed	p.E290	1.000	60	0%	113	34.5%	2	0%	-	-	-	NULL
CCNL1	57018	genome.wustl.edu	37	3	156867160	156867160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020307.2	-1	validated	p.S383I	1.000	317	0%	200	30.5%	55	47.2%	possibly_damaging(0.861)	tolerated(0.19)	neutral(0.383)	NULL
VEPH1	79674	genome.wustl.edu	37	3	157146124	157146124	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024621.2	-1	validated	p.K228T	0.001	228	0%	185	33.5%	6	66.6%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
VEPH1	79674	genome.wustl.edu	37	3	157177919	157177919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000468233	-1	known	p.V194L	0.000	155	0%	65	13.8%	0	-	benign(0.055)	-	-	NULL
SHOX2	6474	genome.wustl.edu	37	3	157820526	157820526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006884.3	-1	reviewed	p.D166N	1.000	111	0%	179	34.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
RSRC1	51319	genome.wustl.edu	37	3	157841705	157841705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016625.2	+1	provisional	p.R82Q	1.000	118	0%	84	34.5%	18	38.8%	unknown(0)	deleterious(0)	-	NULL
LXN	56925	genome.wustl.edu	37	3	158384453	158384453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020169.3	-1	reviewed	p.K217N	0.049	202	0%	175	33.7%	11	9%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_Latexin
SMC4	10051	genome.wustl.edu	37	3	160135545	160135545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002800.1	+1	validated	p.S491L	0.726	67	0%	50	16%	28	21.4%	benign(0.045)	tolerated(0.19)	neutral(0.052)	HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160151484	160151484	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002800.1	+1	validated	p.R1252*	1.000	74	0%	60	28.3%	27	59.2%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM59	286827	genome.wustl.edu	37	3	160156628	160156628	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173084.2	-1	validated	p.L115*	1.000	124	0%	109	25.7%	4	0%	-	-	-	HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain
KPNA4	3840	genome.wustl.edu	37	3	160225943	160225943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002268.3	-1	reviewed	p.A442S	1.000	208	0%	102	29.4%	26	30.7%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_ARM repeat
SPTSSB	165679	genome.wustl.edu	37	3	161063902	161063902	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040100.1	-1	validated	p.Y70*	0.038	64	0%	25	44%	3	33.3%	-	-	-	NULL
OTOL1	131149	genome.wustl.edu	37	3	161221432	161221432	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080440.1	+1	provisional	p.K379T	0.363	124	0%	47	38.3%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
OTOL1	131149	genome.wustl.edu	37	3	161221648	161221648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080440.1	+1	provisional	p.G451E	0.994	58	0%	20	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
SI	6476	genome.wustl.edu	37	3	164724695	164724695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001041.3	-1	reviewed	p.E1439K	1.000	116	0%	56	17.9%	0	-	possibly_damaging(0.897)	tolerated(0.27)	neutral(0.387)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164733743	164733743	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001041.3	-1	reviewed	p.I1295	0.939	157	0%	107	22.4%	0	-	-	-	-	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164773077	164773077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001041.3	-1	reviewed	p.V473I	0.995	114	0%	54	29.6%	0	-	possibly_damaging(0.925)	tolerated(0.11)	deleterious(0.645)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SLITRK3	22865	genome.wustl.edu	37	3	164907329	164907329	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014926.2	-1	validated	p.N430K	1.000	119	0%	84	32.1%	0	-	benign(0.429)	tolerated(0.36)	neutral(0.160)	superfamily_SSF52058
SLITRK3	22865	genome.wustl.edu	37	3	164907988	164907988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014926.2	-1	validated	p.L211I	1.000	89	0%	87	16.1%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_SSF52058
BCHE	590	genome.wustl.edu	37	3	165547500	165547500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000055.2	-1	reviewed	p.G441V	0.805	91	0%	46	34.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_COesterase,superfamily_SSF53474
BCHE	590	genome.wustl.edu	37	3	165547698	165547698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000055.2	-1	reviewed	p.R375I	0.004	56	0%	20	25%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_COesterase,superfamily_SSF53474
ZBBX	79740	genome.wustl.edu	37	3	166960345	166960345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024687.2	-1	validated	p.D742Y	0.002	172	0%	89	32.6%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167000227	167000227	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024687.2	-1	validated	p.E646*	0.000	128	0%	102	27.5%	0	-	-	-	-	NULL
ZBBX	79740	genome.wustl.edu	37	3	167051693	167051693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024687.2	-1	validated	p.E203D	0.000	290	0%	77	16.9%	0	-	benign(0.031)	tolerated(0.32)	neutral(0.026)	NULL
WDR49	151790	genome.wustl.edu	37	3	167293815	167293815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178824.3	-1	provisional	p.S126L	0.997	140	0%	54	31.5%	0	-	probably_damaging(0.963)	tolerated(0.14)	deleterious(0.655)	NULL
PDCD10	11235	genome.wustl.edu	37	3	167413466	167413466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007217.3	-1	reviewed	p.E105K	1.000	424	0.2%	254	30.3%	41	24.3%	benign(0)	tolerated(0.93)	-	HMMPfam_DUF1241
LRRIQ4	344657	genome.wustl.edu	37	3	169555363	169555363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080460.1	+1	provisional	p.D543Y	1.000	113	0%	90	34.4%	0	-	unknown(0)	tolerated(0.06)	-	NULL
SAMD7	344658	genome.wustl.edu	37	3	169646300	169646300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182610.2	+1	provisional	p.Q325H	1.000	148	0%	159	31.4%	0	-	benign(0.006)	tolerated(0.29)	neutral(0.029)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
TNIK	23043	genome.wustl.edu	37	3	170801980	170801980	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015028.2	-1	validated	p.R1045*	1.000	164	0%	94	29.8%	0	-	-	-	-	HMMSmart_SM00036
TNIK	23043	genome.wustl.edu	37	3	170825889	170825889	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015028.2	-1	validated	p.E783*	1.000	112	0%	63	33.3%	0	-	-	-	-	NULL
PLD1	5337	genome.wustl.edu	37	3	171427438	171427438	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002662.3	-1	validated	p.E325*	1.000	257	0%	203	34%	1	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_Phospholipase D/nuclease
GHSR	2693	genome.wustl.edu	37	3	172162995	172162995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198407.2	-1	reviewed	p.D353Y	1.000	53	0%	73	37%	0	-	possibly_damaging(0.859)	deleterious(0.04)	deleterious(0.681)	superfamily_Family A G protein-coupled receptor-like
GHSR	2693	genome.wustl.edu	37	3	172163068	172163068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198407.2	-1	reviewed	p.K328N	1.000	78	0%	131	26.7%	0	-	probably_damaging(0.968)	tolerated(0.4)	neutral(0.426)	superfamily_Family A G protein-coupled receptor-like
NCEH1	57552	genome.wustl.edu	37	3	172351822	172351822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020792.4	-1	validated	p.L256I	1.000	139	0%	109	24.8%	11	27.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
NLGN1	22871	genome.wustl.edu	37	3	173322629	173322629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014932.2	+1	reviewed	p.L81I	1.000	148	0%	46	30.4%	0	-	benign(0.125)	deleterious(0.01)	neutral(0.416)	HMMPfam_COesterase,superfamily_SSF53474
NLGN1	22871	genome.wustl.edu	37	3	173993173	173993173	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014932.2	+1	reviewed	p.R239	1.000	108	0%	84	34.5%	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
NAALADL2	254827	genome.wustl.edu	37	3	175042084	175042084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207015.2	+1	validated	p.D354Y	1.000	148	0%	98	19.4%	19	36.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Transferrin receptor ectodomain apical domain
TBL1XR1	79718	genome.wustl.edu	37	3	176768326	176768326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024665.4	-1	reviewed	p.G167D	1.000	111	0%	69	34.8%	22	68.1%	possibly_damaging(0.844)	deleterious(0.01)	deleterious(0.729)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TBL1XR1	79718	genome.wustl.edu	37	3	176768329	176768329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024665.4	-1	reviewed	p.R166Q	1.000	109	0%	69	36.2%	24	20.8%	benign(0.128)	deleterious(0.04)	neutral(0.359)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PIK3CA	5290	genome.wustl.edu	37	3	178927439	178927439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006218.2	+1	reviewed	p.R401Q	1.000	201	0%	149	27.5%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
PIK3CA	5290	genome.wustl.edu	37	3	178937754	178937754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006218.2	+1	reviewed	p.Q643H	0.977	169	0%	53	26.4%	1	0%	possibly_damaging(0.807)	tolerated(0.06)	deleterious(0.627)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
PIK3CA	5290	genome.wustl.edu	37	3	178951992	178951992	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006218.2	+1	reviewed	p.F1016C	1.000	114	0%	37	37.8%	13	23%	probably_damaging(0.988)	tolerated(0.16)	deleterious(0.497)	HMMSmart_PI3Kc,superfamily_Kinase_like
MFN1	55669	genome.wustl.edu	37	3	179107814	179107814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033540.2	+1	reviewed	p.R679C	1.000	115	0%	113	37.2%	35	45.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fzo_mitofusin
GNB4	59345	genome.wustl.edu	37	3	179143986	179143986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021629.3	-1	reviewed	p.M1I	1.000	159	0%	54	38.9%	3	0%	unknown(0)	deleterious(0.01)	-	superfamily_WD40 repeat-like
ACTL6A	86	genome.wustl.edu	37	3	179301201	179301201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004301.3	+1	reviewed	p.R363G	1.000	201	0%	139	23.7%	75	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
USP13	8975	genome.wustl.edu	37	3	179448032	179448032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003940.2	+1	validated	p.D382Y	1.000	206	0.5%	344	27.3%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
TTC14	151613	genome.wustl.edu	37	3	180321029	180321029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133462.3	+1	validated	p.S135Y	0.998	376	0%	634	28.7%	1	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_Nucleic acid-binding proteins
TTC14	151613	genome.wustl.edu	37	3	180323563	180323563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133462.3	+1	validated	p.F289L	1.000	93	0%	115	12.2%	0	-	possibly_damaging(0.779)	tolerated(0.09)	deleterious(0.588)	NULL
CCDC39	339829	genome.wustl.edu	37	3	180337681	180337681	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181426.1	-1	validated	p.I692	0.796	295	0%	103	32%	0	-	-	-	-	superfamily_Prefoldin
CCDC39	339829	genome.wustl.edu	37	3	180359859	180359859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181426.1	-1	validated	p.R599Q	0.944	240	0%	188	21.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC39	339829	genome.wustl.edu	37	3	180359908	180359908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181426.1	-1	validated	p.L583I	1.000	208	0.5%	171	32.7%	0	-	possibly_damaging(0.757)	tolerated(0.23)	neutral(0.321)	NULL
CCDC39	339829	genome.wustl.edu	37	3	180370047	180370047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181426.1	-1	validated	p.S313Y	0.782	157	0%	73	34.2%	0	-	benign(0.019)	tolerated(0.06)	neutral(0.324)	superfamily_Prefoldin
FXR1	8087	genome.wustl.edu	37	3	180666201	180666201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005087.2	+1	reviewed	p.R113W	1.000	106	0%	52	48.1%	77	38.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Agenet
FXR1	8087	genome.wustl.edu	37	3	180693112	180693112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005087.2	+1	reviewed	p.D539Y	1.000	89	0%	34	14.7%	32	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP11B	23200	genome.wustl.edu	37	3	182605446	182605446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014616.1	+1	validated	p.L930I	1.000	203	0%	137	24.8%	4	0%	probably_damaging(0.974)	tolerated(0.47)	neutral(0.427)	NULL
MCF2L2	23101	genome.wustl.edu	37	3	182947543	182947543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015078.2	-1	validated	p.I652M	0.745	147	0%	138	34.1%	0	-	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
MCF2L2	23101	genome.wustl.edu	37	3	183028714	183028714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015078.2	-1	validated	p.D328N	1.000	116	0%	108	24.1%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMSmart_SM00150,superfamily_Spectrin repeat
MCF2L2	23101	genome.wustl.edu	37	3	183107517	183107517	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015078.2	-1	validated	p.E43*	1.000	167	0%	75	12%	0	-	-	-	-	HMMSmart_SM00516
YEATS2	55689	genome.wustl.edu	37	3	183435531	183435531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018023.4	+1	validated	p.D65Y	1.000	101	0%	83	28.9%	2	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
ABCC5	10057	genome.wustl.edu	37	3	183643459	183643459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005688.2	-1	reviewed	p.L1366V	0.048	202	0%	176	33%	21	38%	benign(0.019)	tolerated(0.52)	neutral(0.010)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
VWA5B2	90113	genome.wustl.edu	37	3	183951047	183951047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138345.1	+1	provisional	p.T131M	1.000	16	0%	40	30%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
VWA5B2	90113	genome.wustl.edu	37	3	183955029	183955029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138345.1	+1	provisional	p.R517W	1.000	39	0%	57	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_VWA,superfamily_SSF53300
PSMD2	5708	genome.wustl.edu	37	3	184025799	184025799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002808.3	+1	reviewed	p.R807Q	1.000	65	0%	99	42.4%	488	38.3%	benign(0.117)	deleterious(0.01)	neutral(0.415)	NULL
THPO	7066	genome.wustl.edu	37	3	184093705	184093705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000460.2	-1	reviewed	p.R38C	1.000	109	0%	199	30.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_EPO_TPO,superfamily_4-helical cytokines,PatternScan_EPO_TPO
VPS8	23355	genome.wustl.edu	37	3	184644409	184644409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009921.2	+1	validated	p.D868N	1.000	76	0%	60	40%	10	60%	possibly_damaging(0.94)	tolerated(0.09)	deleterious(0.681)	NULL
EHHADH	1962	genome.wustl.edu	37	3	184910323	184910323	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001966.3	-1	reviewed	p.E621	1.000	110	0.9%	43	41.9%	10	90%	-	-	-	HMMPfam_3HCDH,superfamily_6DGDH_C_like
EHHADH	1962	genome.wustl.edu	37	3	184935987	184935987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001966.3	-1	reviewed	p.L169I	0.288	174	0%	226	26.5%	3	33.3%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_ECH,superfamily_SSF52096
MAP3K13	9175	genome.wustl.edu	37	3	185161405	185161405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004721.3	+1	reviewed	p.R278C	1.000	142	0%	92	32.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAP3K13	9175	genome.wustl.edu	37	3	185191157	185191157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004721.3	+1	reviewed	p.R680W	1.000	69	0%	20	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SENP2	59343	genome.wustl.edu	37	3	185318610	185318610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021627.2	+1	validated	p.R139Q	0.991	141	0%	92	27.2%	7	42.8%	possibly_damaging(0.867)	tolerated(0.47)	neutral(0.348)	NULL
SENP2	59343	genome.wustl.edu	37	3	185327081	185327081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021627.2	+1	validated	p.R222Q	1.000	137	0%	94	31.9%	9	22.2%	possibly_damaging(0.867)	tolerated(0.07)	deleterious(0.655)	NULL
IGF2BP2	10644	genome.wustl.edu	37	3	185393145	185393145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006548.4	-1	reviewed	p.A337V	1.000	104	0%	63	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
IGF2BP2	10644	genome.wustl.edu	37	3	185407367	185407367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006548.4	-1	reviewed	p.K151N	1.000	41	0%	66	37.9%	0	-	possibly_damaging(0.594)	deleterious(0.03)	deleterious(0.570)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ETV5	2119	genome.wustl.edu	37	3	185783730	185783730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004454.2	-1	validated	p.G261E	1.000	91	0%	55	21.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ETS_PEA3_N
DGKG	1608	genome.wustl.edu	37	3	185990090	185990090	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001346.2	-1	reviewed	p.I318S	1.000	151	0%	195	29.2%	0	-	probably_damaging(0.996)	tolerated(0.56)	neutral(0.468)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
KNG1	3827	genome.wustl.edu	37	3	186460097	186460097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102416.2	+1	reviewed	p.D638N	0.122	90	0%	54	31.5%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
EIF4A2	1974	genome.wustl.edu	37	3	186503753	186503753	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001967.3	+1	validated	p.E144*	1.000	99	0%	146	26%	241	22.4%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SST	6750	genome.wustl.edu	37	3	187386906	187386906	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001048.3	-1	reviewed	p.E100*	1.000	145	0%	216	36.6%	0	-	-	-	-	HMMPfam_Somatostatin
BCL6	604	genome.wustl.edu	37	3	187449604	187449604	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130845.1	-1	reviewed	p.T92	0.988	48	0%	88	28.4%	26	38.4%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
LPP	4026	genome.wustl.edu	37	3	188590443	188590443	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005578.3	+1	reviewed	p.P534	0.008	179	0%	69	37.7%	9	22.2%	-	-	-	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LEPREL1	55214	genome.wustl.edu	37	3	189675751	189675751	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018192.3	-1	validated	p.E693*	1.000	364	0%	170	31.8%	3	66.6%	-	-	-	NULL
IL1RAP	3556	genome.wustl.edu	37	3	190373677	190373677	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000317757	+1	known	e10-1	1.000	79	0%	62	35.5%	0	-	-	-	-	-
UTS2D	257313	genome.wustl.edu	37	3	190994622	190994622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198152.3	-1	validated	p.P72T	0.004	329	0%	183	21.3%	1	100%	benign(0.013)	tolerated(0.08)	neutral(0.300)	NULL
CCDC50	152137	genome.wustl.edu	37	3	191087757	191087757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178335.2	+1	reviewed	p.R127I	0.989	86	0%	32	46.9%	40	35%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FGF12	2257	genome.wustl.edu	37	3	191888260	191888260	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021032.3	-1	reviewed	p.P200	0.824	149	0%	69	26.1%	4	0%	-	-	-	HMMSmart_SM00442,superfamily_Cytokine
ATP13A5	344905	genome.wustl.edu	37	3	193061806	193061806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198505.2	-1	provisional	p.D285Y	1.000	79	0%	61	14.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
ATP13A4	84239	genome.wustl.edu	37	3	193166071	193166071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032279.2	-1	validated	p.E692D	1.000	226	0%	182	33.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP13A4	84239	genome.wustl.edu	37	3	193232516	193232516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032279.2	-1	validated	p.E69*	1.000	63	0%	67	31.3%	0	-	-	-	-	NULL
OPA1	4976	genome.wustl.edu	37	3	193355804	193355804	+	Nonsense_Mutation	SNP	C	C	T	rs104893752		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130837.2	+1	reviewed	p.R367*	1.000	297	0%	192	38%	7	0%	-	-	-	HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATP13A3	79572	genome.wustl.edu	37	3	194151942	194151942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024524.3	-1	validated	p.K812T	0.779	92	0%	90	33.3%	24	29.1%	benign(0.389)	tolerated(0.3)	neutral(0.153)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ENSG00000206600	0	genome.wustl.edu	37	3	194935552	194935552	+	RNA	SNP	C	C	T	rs192900678	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000383873	+1	novel	NULL	0.000	30	0%	57	28.1%	0	-	-	-	-	-
MUC4	4585	genome.wustl.edu	37	3	195475886	195475886	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018406.5	-1	reviewed	p.G5179	0.001	60	0%	104	16.3%	3	33.3%	-	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195490945	195490945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018406.5	-1	reviewed	p.G4544D	0.840	17	0%	21	52.4%	1	0%	probably_damaging(0.994)	-	-	HMMSmart_SM00216
MUC4	4585	genome.wustl.edu	37	3	195507455	195507455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018406.5	-1	reviewed	p.P3538T	0.000	139	0%	199	17.6%	1	0%	possibly_damaging(0.864)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195512862	195512862	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018406.5	-1	reviewed	p.S1863	0.053	290	0%	505	13.9%	1	0%	-	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195513605	195513605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018406.5	-1	reviewed	p.P1616S	0.016	172	7.6%	321	13.1%	1	0%	possibly_damaging(0.948)	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195517870	195517870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018406.5	-1	reviewed	p.S194Y	0.000	287	0%	310	31.9%	0	-	possibly_damaging(0.901)	tolerated(0.08)	deleterious(0.657)	NULL
ZDHHC19	131540	genome.wustl.edu	37	3	195925262	195925262	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039617.1	-1	validated	p.P278	0.000	23	0%	52	30.8%	1	100%	-	-	-	NULL
ZDHHC19	131540	genome.wustl.edu	37	3	195937536	195937536	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039617.1	-1	validated	p.F73L	0.994	61	0%	145	30.3%	0	-	benign(0.001)	tolerated(1)	-	NULL
UBXN7	26043	genome.wustl.edu	37	3	196083616	196083616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015562.1	-1	validated	p.I470M	1.000	173	0%	130	25.4%	14	42.8%	benign(0.069)	tolerated(0.21)	neutral(0.048)	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
UBXN7	26043	genome.wustl.edu	37	3	196088771	196088771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015562.1	-1	validated	p.R418W	1.000	181	0%	108	32.4%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
WDR53	348793	genome.wustl.edu	37	3	196287941	196287941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182627.1	-1	provisional	p.S136P	1.000	148	0%	145	13.8%	6	16.6%	possibly_damaging(0.658)	tolerated(0.1)	deleterious(0.519)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FBXO45	200933	genome.wustl.edu	37	3	196311172	196311172	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105573.1	+1	validated	p.K282Q	1.000	169	0%	151	25.8%	17	52.9%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_SPRY,HMMSmart_SPRY
CEP19	84984	genome.wustl.edu	37	3	196435511	196435511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032898.3	-1	validated	p.K10N	1.000	167	0%	291	11.3%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LRCH3	84859	genome.wustl.edu	37	3	197559119	197559119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032773.2	+1	provisional	p.E345*	1.000	124	0%	77	23.4%	6	33.3%	-	-	-	superfamily_SSF52058
ENSG00000186777	0	genome.wustl.edu	37	4	265317	265317	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000414523	-1	known	e6-1	1.000	161	0%	209	29.7%	0	-	benign(0.032)	tolerated(0.06)	neutral(0.324)	-
ZNF732	654254	genome.wustl.edu	37	4	265585	265585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137608.1	-1	provisional	p.R354I	0.159	81	0%	96	22.9%	0	-	benign(0.041)	tolerated(0.42)	neutral(0.017)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667
ZNF732	654254	genome.wustl.edu	37	4	266312	266312	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137608.1	-1	provisional	p.E112*	0.002	186	0%	169	26%	0	-	-	-	-	NULL
ZNF732	654254	genome.wustl.edu	37	4	289247	289247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137608.1	-1	provisional	p.E69V	0.207	304	0%	229	32.3%	0	-	benign(0.005)	tolerated(0.26)	neutral(0.034)	NULL
ZNF141	7700	genome.wustl.edu	37	4	366743	366743	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000240499	+1	known	p.F173V	0.504	127	0%	123	30.1%	3	33.3%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	superfamily_SSF57667
ZNF721	170960	genome.wustl.edu	37	4	437198	437198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133474.2	-1	validated	p.R353I	0.219	193	0%	128	28.1%	34	44.1%	benign(0.16)	tolerated(0.2)	neutral(0.064)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF721	170960	genome.wustl.edu	37	4	437533	437533	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133474.2	-1	validated	p.K241N	0.132	146	0%	113	30.1%	18	55.5%	possibly_damaging(0.62)	tolerated(0.54)	neutral(0.224)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PDE6B	5158	genome.wustl.edu	37	4	650074	650074	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000283.3	+1	reviewed	p.K367T	0.034	231	0%	489	12.5%	1	100%	benign(0)	tolerated(0.6)	neutral(0.004)	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
KIAA1530	57654	genome.wustl.edu	37	4	1377703	1377703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020894.2	+1	validated	p.R671C	0.778	42	0%	99	29.3%	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGFR3	2261	genome.wustl.edu	37	4	1806650	1806650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000142.4	+1	reviewed	p.E456K	1.000	31	0%	39	30.8%	5	20%	unknown(0)	deleterious(0)	-	NULL
HAUS3	79441	genome.wustl.edu	37	4	2241802	2241802	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024511.5	-1	provisional	p.K291T	0.998	128	0%	211	32.2%	8	37.5%	benign(0.028)	tolerated(0.22)	neutral(0.044)	NULL
HAUS3	79441	genome.wustl.edu	37	4	2241823	2241823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024511.5	-1	provisional	p.S284L	0.047	131	0%	199	30.7%	13	30.7%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
ADD1	118	genome.wustl.edu	37	4	2927770	2927770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014189.2	+1	reviewed	p.E629*	0.472	52	0%	101	26.7%	76	21%	-	-	-	NULL
GRK4	2868	genome.wustl.edu	37	4	2986263	2986263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182982.2	+1	reviewed	p.R26C	1.000	54	0%	54	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GRK4	2868	genome.wustl.edu	37	4	2994007	2994007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182982.2	+1	reviewed	p.F109L	1.000	214	0%	123	38.2%	1	0%	benign(0.36)	tolerated(0.21)	neutral(0.159)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
GRK4	2868	genome.wustl.edu	37	4	3021546	3021546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182982.2	+1	reviewed	p.R307I	1.000	114	0%	119	29.4%	2	0%	probably_damaging(0.997)	tolerated(0.38)	deleterious(0.484)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRPAP1	4043	genome.wustl.edu	37	4	3516638	3516638	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002337.2	-1	validated	p.F284	0.759	95	0%	158	29.7%	403	33.4%	-	-	-	HMMPfam_Alpha-2-MRAP_C
OTOP1	133060	genome.wustl.edu	37	4	4199531	4199531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177998.1	-1	provisional	p.E344K	1.000	63	0%	35	22.9%	0	-	possibly_damaging(0.808)	tolerated(0.42)	neutral(0.318)	HMMPfam_DUF270
OTOP1	133060	genome.wustl.edu	37	4	4204196	4204196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177998.1	-1	provisional	p.G237C	1.000	117	0%	75	17.3%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_DUF270
STK32B	55351	genome.wustl.edu	37	4	5448489	5448489	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018401.1	+1	provisional	p.L218	1.000	48	0%	33	27.3%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STK32B	55351	genome.wustl.edu	37	4	5468522	5468522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018401.1	+1	provisional	p.K334N	1.000	80	0%	83	36.1%	0	-	possibly_damaging(0.929)	tolerated(0.23)	neutral(0.417)	NULL
EVC2	132884	genome.wustl.edu	37	4	5693010	5693010	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_147127.4	-1	reviewed	p.I167	0.918	146	0%	148	31.8%	0	-	-	-	-	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6043910	6043910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099433.1	-1	validated	p.K691N	1.000	232	0%	345	13.6%	0	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
JAKMIP1	152789	genome.wustl.edu	37	4	6051573	6051573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099433.1	-1	validated	p.K645N	1.000	145	0%	245	33.9%	0	-	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6862906	6862906	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100590.1	+1	validated	p.E266A	0.997	75	0%	45	20%	9	88.8%	benign(0.097)	deleterious(0.02)	neutral(0.391)	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6864782	6864782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100590.1	+1	validated	p.E891D	0.007	91	0%	69	37.7%	10	30%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
SORCS2	57537	genome.wustl.edu	37	4	7668893	7668893	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020777.2	+1	reviewed	p.R372*	0.972	148	0%	198	36.9%	0	-	-	-	-	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
SH3TC1	54436	genome.wustl.edu	37	4	8235127	8235127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018986.3	+1	validated	p.L1057M	1.000	79	0%	125	30.4%	17	11.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HTRA3	94031	genome.wustl.edu	37	4	8288439	8288439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053044.2	+1	provisional	p.D213N	0.754	64	0%	77	27.3%	19	10.5%	benign(0.381)	tolerated(0.33)	neutral(0.145)	HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases
HTRA3	94031	genome.wustl.edu	37	4	8305930	8305930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053044.2	+1	provisional	p.A374T	0.588	91	0%	101	26.7%	24	0%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMSmart_SM00228,superfamily_PDZ domain-like
METTL19	152992	genome.wustl.edu	37	4	8470038	8470038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152544.1	+1	provisional	p.S239Y	0.000	31	0%	73	30.1%	6	50%	possibly_damaging(0.91)	deleterious(0.05)	deleterious(0.708)	NULL
LOC650293	650293	genome.wustl.edu	37	4	8951693	8951693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040071.1	+1	provisional	p.L73I	0.002	105	0%	134	27.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC100133128	100133128	genome.wustl.edu	37	4	9400981	9400981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001720802.1	+1	model	p.L18I	0.164	125	0%	120	18.3%	0	-	-	-	-	NULL
LOC100288554	100288554	genome.wustl.edu	37	4	9423984	9423984	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342446.1	+1	model	p.S31	0.223	240	0%	190	38.9%	0	-	-	-	-	NULL
DRD5	1816	genome.wustl.edu	37	4	9784901	9784901	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000798.4	+1	reviewed	p.N416	0.445	89	0%	147	34%	0	-	-	-	-	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10446713	10446713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053042.2	-1	validated	p.K414E	0.000	179	0%	169	27.2%	7	28.5%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
CLNK	116449	genome.wustl.edu	37	4	10515153	10515153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052964.2	-1	validated	p.E281K	0.000	172	0%	77	36.4%	0	-	benign(0.343)	tolerated(0.14)	neutral(0.357)	superfamily_SH2 domain
CPEB2	132864	genome.wustl.edu	37	4	15009149	15009149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182485.2	+1	reviewed	p.S191Y	1.000	95	0%	166	65.7%	6	100%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15480424	15480424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080522.2	+1	reviewed	p.K39N	0.122	119	0%	85	27.1%	1	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15558962	15558962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080522.2	+1	reviewed	p.F887L	1.000	77	0%	37	29.7%	0	-	possibly_damaging(0.706)	tolerated(0.08)	deleterious(0.554)	NULL
CC2D2A	57545	genome.wustl.edu	37	4	15575941	15575941	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080522.2	+1	reviewed	p.R1255*	0.981	177	0%	84	22.6%	1	0%	-	-	-	NULL
FAM200B	285550	genome.wustl.edu	37	4	15690230	15690230	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145191.1	+1	validated	p.R544*	0.367	77	0%	62	16.1%	5	0%	-	-	-	NULL
CD38	952	genome.wustl.edu	37	4	15841676	15841676	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001775.2	+1	validated	p.N229K	0.239	458	0%	420	24.8%	22	0%	possibly_damaging(0.534)	tolerated(0.06)	deleterious(0.503)	HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like
CD38	952	genome.wustl.edu	37	4	15842114	15842114	+	Silent	SNP	G	G	A	rs140237964	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001775.2	+1	validated	p.S264	0.000	96	0%	148	36.5%	8	0%	-	-	-	HMMPfam_Rib_hydrolayse,superfamily_ADP ribosyl cyclase-like
FGFBP2	83888	genome.wustl.edu	37	4	15964110	15964110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031950.3	-1	reviewed	p.A215T	0.984	85	0%	75	38.7%	1	0%	benign(0.425)	tolerated(0.91)	neutral(0.138)	HMMPfam_FGF-BP1
PROM1	8842	genome.wustl.edu	37	4	16026840	16026840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006017.2	-1	reviewed	p.R202Q	0.012	157	0%	89	30.3%	14	42.8%	possibly_damaging(0.464)	tolerated(0.2)	neutral(0.202)	HMMPfam_Prominin
LDB2	9079	genome.wustl.edu	37	4	16507539	16507539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130834.1	-1	validated	p.A320T	1.000	65	0%	32	31.2%	3	0%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_LIM_bind
NCAPG	64151	genome.wustl.edu	37	4	17819063	17819063	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022346.3	+1	validated	p.N319H	0.231	114	0%	126	29.4%	13	46.1%	benign(0.296)	tolerated(0.58)	neutral(0.097)	superfamily_ARM-type_fold
LCORL	254251	genome.wustl.edu	37	4	17886213	17886213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000382226	-1	known	p.E313D	1.000	149	0%	76	25%	0	-	benign(0.246)	tolerated(0.06)	neutral(0.348)	NULL
SLIT2	9353	genome.wustl.edu	37	4	20619080	20619080	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004787.1	+1	provisional	p.C1385	0.635	104	0%	59	33.9%	110	40%	-	-	-	HMMSmart_SM00181,superfamily_EGF/Laminin
GBA3	57733	genome.wustl.edu	37	4	22749269	22749269	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020973.3	+1	validated	p.R213*	0.808	136	0%	58	31%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
DHX15	1665	genome.wustl.edu	37	4	24577996	24577996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001358.2	-1	reviewed	p.R126Q	1.000	245	0%	229	31.9%	125	41.6%	possibly_damaging(0.85)	tolerated(0.13)	deleterious(0.580)	NULL
CCDC149	91050	genome.wustl.edu	37	4	24824158	24824158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130726.1	-1	validated	p.L335V	1.000	182	0%	85	21.2%	2	0%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	HMMPfam_DUF2353
SEL1L3	23231	genome.wustl.edu	37	4	25806296	25806296	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015187.3	-1	validated	p.I548S	0.000	196	0%	122	31.1%	53	0%	benign(0.004)	deleterious(0)	neutral(0.445)	superfamily_HCP-like
SEL1L3	23231	genome.wustl.edu	37	4	25821487	25821487	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015187.3	-1	validated	p.E456*	0.852	122	0%	71	29.6%	41	0%	-	-	-	superfamily_HCP-like
SEL1L3	23231	genome.wustl.edu	37	4	25849049	25849049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015187.3	-1	validated	p.K200N	0.998	97	0%	55	32.7%	55	47.2%	possibly_damaging(0.487)	deleterious(0)	deleterious(0.607)	NULL
CCKAR	886	genome.wustl.edu	37	4	26490892	26490892	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000730.2	-1	reviewed	p.F109	0.987	114	0%	93	35.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TBC1D19	55296	genome.wustl.edu	37	4	26622234	26622234	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018317.2	+1	validated	e4-1	1.000	170	0.6%	77	29.9%	0	-	-	-	-	-
ARAP2	116984	genome.wustl.edu	37	4	36152575	36152575	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015230.2	-1	reviewed	p.I948	1.000	235	0%	111	27%	2	50%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36189076	36189076	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015230.2	-1	reviewed	p.E559*	1.000	113	0%	46	39.1%	4	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARAP2	116984	genome.wustl.edu	37	4	36214942	36214942	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015230.2	-1	reviewed	e3-1	1.000	62	0%	44	36.4%	1	100%	-	-	-	-
ARAP2	116984	genome.wustl.edu	37	4	36230520	36230520	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015230.2	-1	reviewed	p.E197*	0.000	77	0%	35	42.9%	1	0%	-	-	-	NULL
DTHD1	401124	genome.wustl.edu	37	4	36285675	36285675	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000456874	+1	known	p.E112*	1.000	15	0%	19	31.6%	0	-	-	-	-	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37445492	37445492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144990.1	+1	validated	p.D628Y	1.000	72	0%	56	35.7%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37447351	37447351	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144990.1	+1	validated	p.I1247	0.046	66	0%	61	39.3%	0	-	-	-	-	superfamily_WD40_like
KIAA1239	57495	genome.wustl.edu	37	4	37447868	37447868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144990.1	+1	validated	p.A1420S	1.000	42	0%	21	38.1%	0	-	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	HMMSmart_WD40,superfamily_WD40_like
PGM2	55276	genome.wustl.edu	37	4	37850231	37850231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018290.3	+1	validated	p.K457N	1.000	137	0%	81	24.7%	27	25.9%	benign(0.001)	tolerated(0.13)	neutral(0.253)	superfamily_A-D-PHexomutase_a/b/a-I/II/III
TLR10	81793	genome.wustl.edu	37	4	38774898	38774898	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017388.1	-1	reviewed	p.R772*	0.732	136	0%	54	37%	2	0%	-	-	-	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
TLR10	81793	genome.wustl.edu	37	4	38775004	38775004	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017388.1	-1	reviewed	p.Y736*	0.964	141	0%	71	25.4%	1	0%	-	-	-	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
TLR1	7096	genome.wustl.edu	37	4	38799897	38799897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003263.3	-1	reviewed	p.D186Y	0.000	85	0%	54	31.5%	5	0%	benign(0.313)	tolerated(0.27)	neutral(0.131)	superfamily_L domain-like
TLR1	7096	genome.wustl.edu	37	4	38800023	38800023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003263.3	-1	reviewed	p.L144M	0.857	100	0%	65	26.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
TLR6	10333	genome.wustl.edu	37	4	38829730	38829730	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006068.3	-1	validated	p.L455	0.999	191	0%	263	29.3%	2	0%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
FAM114A1	92689	genome.wustl.edu	37	4	38933984	38933984	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138389.2	+1	validated	p.K484N	1.000	74	0%	91	30.8%	10	20%	benign(0.058)	tolerated(0.15)	neutral(0.244)	NULL
WDR19	57728	genome.wustl.edu	37	4	39247054	39247054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025132.3	+1	reviewed	p.A904V	1.000	102	0%	70	28.6%	13	46.1%	possibly_damaging(0.853)	tolerated(0.13)	deleterious(0.581)	HMMPfam_Clathrin,superfamily_TPR-like
RFC1	5981	genome.wustl.edu	37	4	39308295	39308295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002913.3	-1	reviewed	p.D638Y	1.000	102	1%	74	24.3%	20	45%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF52540
KLB	152831	genome.wustl.edu	37	4	39448458	39448458	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175737.3	+1	validated	p.S704	0.000	16	0%	25	40%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
KLB	152831	genome.wustl.edu	37	4	39448806	39448806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175737.3	+1	validated	p.F820L	1.000	15	0%	22	40.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
KLB	152831	genome.wustl.edu	37	4	39450003	39450003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175737.3	+1	validated	p.F944L	1.000	64	0%	125	28.8%	0	-	benign(0.08)	tolerated(1)	neutral(0.005)	superfamily_Glyco_hydro_cat
KLB	152831	genome.wustl.edu	37	4	39450082	39450082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175737.3	+1	validated	p.N971H	0.000	113	0%	235	37.9%	0	-	benign(0.313)	tolerated(0.14)	neutral(0.347)	superfamily_Glyco_hydro_cat
PDS5A	23244	genome.wustl.edu	37	4	39911951	39911951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100399.1	-1	reviewed	p.D334Y	1.000	102	0%	109	23.9%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PDS5A	23244	genome.wustl.edu	37	4	39928440	39928440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100399.1	-1	reviewed	p.E128D	1.000	119	0%	39	15.4%	4	25%	possibly_damaging(0.756)	deleterious(0.04)	deleterious(0.628)	superfamily_ARM repeat
N4BP2	55728	genome.wustl.edu	37	4	40099126	40099126	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018177.3	+1	reviewed	p.E56*	1.000	200	0%	188	11.2%	1	100%	-	-	-	superfamily_UBA-like
N4BP2	55728	genome.wustl.edu	37	4	40122717	40122717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018177.3	+1	reviewed	p.A996S	0.000	49	0%	28	25%	1	0%	benign(0.024)	tolerated(0.11)	neutral(0.273)	NULL
APBB2	323	genome.wustl.edu	37	4	41016385	41016385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173075.4	-1	reviewed	p.F17C	1.000	239	0%	183	24%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UCHL1	7345	genome.wustl.edu	37	4	41270025	41270025	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004181.4	+1	reviewed	p.E203*	0.999	88	0%	71	28.2%	46	13%	-	-	-	HMMPfam_Peptidase_C12,superfamily_SSF54001
LIMCH1	22998	genome.wustl.edu	37	4	41663448	41663448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014988.2	+1	validated	p.E631D	0.965	164	0%	101	37.6%	10	30%	possibly_damaging(0.706)	deleterious(0.01)	deleterious(0.659)	NULL
DCAF4L1	285429	genome.wustl.edu	37	4	41983828	41983828	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029955.3	+1	validated	p.R7*	0.897	62	1.6%	51	13.7%	0	-	-	-	-	NULL
BEND4	389206	genome.wustl.edu	37	4	42122026	42122026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000425883	-1	known	p.H400N	1.000	86	0%	69	29%	0	-	-	-	-	NULL
BEND4	389206	genome.wustl.edu	37	4	42145872	42145872	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207406.3	-1	validated	p.N209	0.000	135	0%	119	35.3%	0	-	-	-	-	NULL
ATP8A1	10396	genome.wustl.edu	37	4	42526835	42526835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006095.2	-1	reviewed	p.E584D	1.000	182	0%	76	14.5%	3	0%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP8A1	10396	genome.wustl.edu	37	4	42583714	42583714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006095.2	-1	reviewed	p.R253Q	1.000	111	0%	80	30%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
ATP8A1	10396	genome.wustl.edu	37	4	42592881	42592881	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006095.2	-1	reviewed	p.V157	1.000	113	0%	95	27.4%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
KCTD8	386617	genome.wustl.edu	37	4	44176823	44176823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198353.2	-1	validated	p.Q469L	1.000	175	0%	204	34.8%	0	-	benign(0.176)	deleterious(0)	neutral(0.461)	NULL
COMMD8	54951	genome.wustl.edu	37	4	47455162	47455162	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017845.3	-1	provisional	p.E149*	0.999	155	0%	153	32%	13	7.6%	-	-	-	HMMPfam_HCaRG
ATP10D	57205	genome.wustl.edu	37	4	47514773	47514773	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020453.3	+1	validated	p.V72	1.000	121	0%	55	21.8%	1	100%	-	-	-	NULL
CORIN	10699	genome.wustl.edu	37	4	47625750	47625750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006587.2	-1	reviewed	p.R793H	1.000	108	0%	57	22.8%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Trypsin-like serine proteases,superfamily_SRCR-like
CNGA1	1259	genome.wustl.edu	37	4	47938583	47938583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142564.1	-1	reviewed	p.R712Q	1.000	77	0%	44	29.5%	1	0%	possibly_damaging(0.916)	deleterious(0.02)	deleterious(0.750)	NULL
CNGA1	1259	genome.wustl.edu	37	4	47939119	47939119	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142564.1	-1	reviewed	p.E533	0.998	143	0%	99	25.3%	2	50%	-	-	-	superfamily_cAMP-binding domain-like
CNGA1	1259	genome.wustl.edu	37	4	47945243	47945243	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142564.1	-1	reviewed	p.K204T	0.885	180	0%	74	31.1%	0	-	benign(0.122)	tolerated(0.53)	neutral(0.018)	NULL
TXK	7294	genome.wustl.edu	37	4	48114373	48114373	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003328.2	-1	validated	p.I111L	0.767	281	0%	153	29.4%	17	64.7%	benign(0.019)	tolerated(0.2)	neutral(0.050)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
TEC	7006	genome.wustl.edu	37	4	48147595	48147595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003215.2	-1	reviewed	p.E361D	0.983	116	0%	72	27.8%	16	18.7%	benign(0)	tolerated(1)	-	superfamily_Protein kinase-like (PK-like)
TEC	7006	genome.wustl.edu	37	4	48169838	48169838	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003215.2	-1	reviewed	p.E210*	1.000	230	0%	152	30.3%	7	14.2%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_SH2 domain
FRYL	285527	genome.wustl.edu	37	4	48512919	48512919	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015030.1	-1	validated	p.F2743C	1.000	86	0%	33	18.2%	29	58.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48622714	48622714	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015030.1	-1	validated	p.N86H	1.000	132	0%	90	18.9%	5	60%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	NULL
CWH43	80157	genome.wustl.edu	37	4	48990671	48990671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025087.2	+1	validated	p.R74M	0.992	172	0%	273	32.6%	21	71.4%	possibly_damaging(0.716)	tolerated(0.1)	deleterious(0.545)	NULL
CWH43	80157	genome.wustl.edu	37	4	49000536	49000536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025087.2	+1	validated	p.R258H	0.016	443	0%	255	33.7%	36	33.3%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
USP46	64854	genome.wustl.edu	37	4	53463883	53463883	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022832.3	-1	validated	p.E342*	1.000	131	0%	85	30.6%	8	37.5%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
SCFD2	152579	genome.wustl.edu	37	4	53773639	53773639	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152540.3	-1	validated	p.F609fs	0.921	-	-	-	-	-	-	-	-	-	superfamily_Sec1/munc18-like (SM) proteins
SCFD2	152579	genome.wustl.edu	37	4	54231937	54231937	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152540.3	-1	validated	p.E58*	1.000	45	0%	41	36.6%	9	0%	-	-	-	NULL
FIP1L1	81608	genome.wustl.edu	37	4	54310240	54310240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030917.3	+1	reviewed	p.R419C	1.000	239	0%	154	35.7%	76	44.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC441016	441016	genome.wustl.edu	37	4	54442449	54442449	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_496693.4	+1	model	p.F239	0.104	36	0%	24	41.7%	0	-	-	-	-	HMMPfam_HCaRG
LOC441016	441016	genome.wustl.edu	37	4	54442450	54442450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_496693.4	+1	model	p.E240K	0.111	38	0%	24	33.3%	0	-	-	-	-	HMMPfam_HCaRG
GSX2	170825	genome.wustl.edu	37	4	54968021	54968021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133267.2	+1	validated	p.R283C	0.997	47	0%	63	34.9%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
PDGFRA	5156	genome.wustl.edu	37	4	55131211	55131211	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006206.4	+1	reviewed	p.E252*	0.779	140	0%	90	34.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PDGFRA	5156	genome.wustl.edu	37	4	55143644	55143644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006206.4	+1	reviewed	p.V626M	1.000	258	0%	184	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
PDGFRA	5156	genome.wustl.edu	37	4	55144567	55144567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006206.4	+1	reviewed	p.D681N	1.000	161	0%	128	38.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PDGFRA	5156	genome.wustl.edu	37	4	55146636	55146636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006206.4	+1	reviewed	p.K770N	1.000	91	0%	50	34%	1	0%	possibly_damaging(0.804)	tolerated(0.49)	neutral(0.313)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
KIT	3815	genome.wustl.edu	37	4	55561691	55561691	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000222.2	+1	reviewed	p.P27	0.998	110	0%	47	38.3%	1	0%	-	-	-	NULL
KIT	3815	genome.wustl.edu	37	4	55595547	55595547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000222.2	+1	reviewed	p.L679F	1.000	256	0%	104	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KIT	3815	genome.wustl.edu	37	4	55595593	55595593	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000222.2	+1	reviewed	p.E695*	1.000	219	0%	77	23.4%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KIT	3815	genome.wustl.edu	37	4	55597561	55597561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000222.2	+1	reviewed	p.D737N	0.997	99	0%	41	26.8%	1	0%	benign(0.281)	deleterious(0.02)	deleterious(0.469)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDR	3791	genome.wustl.edu	37	4	55955605	55955605	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002253.2	-1	reviewed	p.E1114*	1.000	229	0%	118	28%	1	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDR	3791	genome.wustl.edu	37	4	55964319	55964319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002253.2	-1	reviewed	p.D832Y	1.000	88	0%	37	24.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like
KDR	3791	genome.wustl.edu	37	4	55970882	55970882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002253.2	-1	reviewed	p.D639Y	0.983	70	0%	42	38.1%	6	0%	possibly_damaging(0.682)	tolerated(0.23)	neutral(0.284)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
KDR	3791	genome.wustl.edu	37	4	55976883	55976883	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002253.2	-1	reviewed	p.T343	0.002	77	0%	26	23.1%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TMEM165	55858	genome.wustl.edu	37	4	56277897	56277897	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018475.3	+1	validated	p.E108D	0.747	138	0%	70	32.9%	93	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0016,PatternScan_UPF0016
CLOCK	9575	genome.wustl.edu	37	4	56308641	56308641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004898.2	-1	reviewed	p.Q688R	1.000	178	0%	103	30.1%	7	42.8%	possibly_damaging(0.677)	tolerated(0.07)	deleterious(0.560)	NULL
NMU	10874	genome.wustl.edu	37	4	56471455	56471455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006681.2	-1	validated	p.R141I	0.999	77	0%	104	31.7%	11	63.6%	possibly_damaging(0.815)	deleterious(0.01)	deleterious(0.713)	NULL
EXOC1	55763	genome.wustl.edu	37	4	56759755	56759755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024924.1	+1	reviewed	p.R588C	1.000	93	0%	43	37.2%	23	52.1%	possibly_damaging(0.847)	tolerated(0.06)	deleterious(0.647)	HMMPfam_Sec3
EXOC1	55763	genome.wustl.edu	37	4	56762984	56762984	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024924.1	+1	reviewed	p.A685	0.996	112	0%	46	10.9%	7	28.5%	-	-	-	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56819341	56819341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025009.3	+1	validated	p.L68F	1.000	121	0%	195	25.6%	1	0%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57179420	57179420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020722.1	+1	validated	p.E138K	1.000	103	0%	206	30.6%	0	-	unknown(0)	deleterious(0)	-	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57189595	57189595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020722.1	+1	validated	p.E1080D	0.996	83	0%	82	39%	2	0%	probably_damaging(0.973)	tolerated(0.21)	neutral(0.459)	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57193915	57193915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020722.1	+1	validated	p.A1216D	1.000	34	0%	33	39.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AASDH	132949	genome.wustl.edu	37	4	57211385	57211385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181806.2	-1	validated	p.D854Y	0.969	229	0%	168	36.9%	7	14.2%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_PQQ,superfamily_Quinoprotein alcohol dehydrogenase-like
SRP72	6731	genome.wustl.edu	37	4	57342840	57342840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006947.3	+1	validated	p.L205R	1.000	171	0%	188	13.3%	44	13.6%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_TPR_1,superfamily_SSF48452
SRP72	6731	genome.wustl.edu	37	4	57352496	57352496	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006947.3	+1	validated	p.F364L	1.000	68	0%	53	45.3%	56	46.4%	benign(0.026)	tolerated(0.41)	neutral(0.016)	superfamily_SSF48452
REST	5978	genome.wustl.edu	37	4	57797177	57797177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005612.3	+1	reviewed	p.S718Y	0.002	39	0%	25	32%	21	28.5%	benign(0.214)	tolerated(0.06)	neutral(0.344)	NULL
REST	5978	genome.wustl.edu	37	4	57797926	57797926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005612.3	+1	reviewed	p.E968*	0.004	67	0%	35	20%	16	56.2%	-	-	-	NULL
POLR2B	5431	genome.wustl.edu	37	4	57871515	57871515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000938.1	+1	reviewed	p.R335I	1.000	168	0%	132	28%	18	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR2B	5431	genome.wustl.edu	37	4	57876937	57876937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000938.1	+1	reviewed	p.K524N	1.000	133	0%	88	28.4%	36	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb2_3,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
LPHN3	23284	genome.wustl.edu	37	4	62801758	62801758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015236.4	+1	reviewed	p.R737Q	1.000	44	0%	34	35.3%	0	-	possibly_damaging(0.929)	tolerated(0.07)	deleterious(0.695)	superfamily_Family A G protein-coupled receptor-like
LPHN3	23284	genome.wustl.edu	37	4	62813970	62813970	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000502815	+1	known	p.T317A	0.725	126	0%	176	31.8%	1	0%	-	-	-	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like
LPHN3	23284	genome.wustl.edu	37	4	62903522	62903522	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015236.4	+1	reviewed	p.S1154*	1.000	109	0%	59	25.4%	1	0%	-	-	-	HMMPfam_Latrophilin,superfamily_Family A G protein-coupled receptor-like
TECRL	253017	genome.wustl.edu	37	4	65147267	65147267	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010874.4	-1	validated	p.A281	0.995	93	0%	39	20.5%	0	-	-	-	-	NULL
EPHA5	2044	genome.wustl.edu	37	4	66230813	66230813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004439.5	-1	reviewed	p.D720Y	1.000	221	0%	130	26.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHA5	2044	genome.wustl.edu	37	4	66242774	66242774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004439.5	-1	reviewed	p.E600K	1.000	66	0%	40	37.5%	0	-	benign(0.051)	tolerated(0.3)	neutral(0.032)	NULL
EPHA5	2044	genome.wustl.edu	37	4	66467408	66467408	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004439.5	-1	reviewed	p.G287	1.000	79	0%	48	25%	0	-	-	-	-	PatternScan_RECEPTOR_TYR_KIN_V_2
UBA6	55236	genome.wustl.edu	37	4	68497439	68497439	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018227.5	-1	validated	p.L749V	0.935	104	0%	156	30.1%	5	40%	benign(0)	tolerated(0.95)	-	HMMPfam_UBACT,superfamily_Activating enzymes of the ubiquitin-like proteins
UBA6	55236	genome.wustl.edu	37	4	68534317	68534317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018227.5	-1	validated	p.E249*	1.000	269	0%	126	28.6%	5	0%	-	-	-	superfamily_Activating enzymes of the ubiquitin-like proteins
TMPRSS11D	9407	genome.wustl.edu	37	4	68693170	68693170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004262.2	-1	reviewed	p.R254I	0.000	85	0%	38	21.1%	0	-	possibly_damaging(0.819)	tolerated(0.18)	neutral(0.365)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
TMPRSS11D	9407	genome.wustl.edu	37	4	68703917	68703917	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004262.2	-1	reviewed	p.E150*	0.926	168	0%	81	28.4%	0	-	-	-	-	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11D	9407	genome.wustl.edu	37	4	68708295	68708295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004262.2	-1	reviewed	p.A100T	0.995	196	0%	78	30.8%	0	-	benign(0.023)	tolerated(0.26)	neutral(0.035)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11B	132724	genome.wustl.edu	37	4	69094475	69094475	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182502.3	-1	validated	p.E358	0.000	114	0%	93	24.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
UGT2B11	10720	genome.wustl.edu	37	4	69870616	69870616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000381096	-1	known	p.F516L	0.000	358	0.6%	126	22.2%	0	-	-	-	-	HMMPfam_UDPGT
UGT2B11	10720	genome.wustl.edu	37	4	70070318	70070318	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001073.1	-1	provisional	p.I380	1.000	187	0%	42	11.9%	0	-	-	-	-	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_SSF53756
UGT2B11	10720	genome.wustl.edu	37	4	70074148	70074148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001073.1	-1	provisional	p.S308Y	0.993	411	0%	139	16.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_UDPGT,superfamily_SSF53756
UGT2B28	54490	genome.wustl.edu	37	4	70146441	70146441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053039.1	+1	provisional	p.E75K	0.021	183	0%	45	24.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70152522	70152522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053039.1	+1	provisional	p.S308Y	1.000	412	0%	112	35.7%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B4	7363	genome.wustl.edu	37	4	70346359	70346359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021139.2	-1	validated	p.R527I	0.000	276	0%	122	32.8%	0	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	NULL
UGT2A1	10941	genome.wustl.edu	37	4	70512938	70512938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006798.2	-1	validated	p.S142I	0.395	129	0%	64	26.6%	0	-	possibly_damaging(0.708)	deleterious(0)	deleterious(0.700)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A1	10941	genome.wustl.edu	37	4	70513107	70513107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006798.2	-1	validated	p.V86L	0.000	101	0%	52	25%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1E1	6783	genome.wustl.edu	37	4	70707725	70707725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005420.2	-1	reviewed	p.R291Q	0.016	181	0%	110	31.8%	0	-	benign(0.039)	deleterious(0.04)	neutral(0.351)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CSN2	1447	genome.wustl.edu	37	4	70823066	70823066	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001891.2	-1	validated	p.E201*	0.011	177	0%	96	27.1%	0	-	-	-	-	HMMPfam_Casein
STATH	6779	genome.wustl.edu	37	4	70865501	70865501	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003154.2	+1	validated	p.F26C	0.000	401	0%	139	30.9%	0	-	unknown(0)	-	-	HMMPfam_Statherin
HTN3	3347	genome.wustl.edu	37	4	70896492	70896492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000200.2	+1	reviewed	p.L12R	0.048	244	0%	226	28.3%	0	-	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	NULL
FDCSP	260436	genome.wustl.edu	37	4	71096944	71096944	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152997.2	+1	validated	p.I11	0.880	86	0%	35	45.7%	1	0%	-	-	-	NULL
CSN3	1448	genome.wustl.edu	37	4	71115001	71115001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005212.2	+1	validated	p.I125S	0.000	107	0%	120	27.5%	0	-	unknown(0)	tolerated(0.74)	-	HMMPfam_Casein_kappa
CABS1	85438	genome.wustl.edu	37	4	71201188	71201188	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033122.3	+1	validated	p.I144	0.539	51	0%	22	31.8%	0	-	-	-	-	NULL
AMBN	258	genome.wustl.edu	37	4	71469002	71469002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016519.4	+1	reviewed	p.S225Y	0.980	282	0%	99	22.2%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_Amelin,HMMSmart_SM00817
AMBN	258	genome.wustl.edu	37	4	71469610	71469610	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016519.4	+1	reviewed	p.L257R	1.000	92	0%	51	25.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Amelin,HMMSmart_SM00817
UTP3	57050	genome.wustl.edu	37	4	71555124	71555124	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020368.2	+1	validated	p.L244	1.000	35	0%	35	28.6%	56	51.7%	-	-	-	HMMPfam_Sas10_Utp3
RUFY3	22902	genome.wustl.edu	37	4	71665917	71665917	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037442.2	+1	validated	p.S539	0.178	143	0%	82	35.4%	8	37.5%	-	-	-	superfamily_FYVE/PHD zinc finger
SLC4A4	8671	genome.wustl.edu	37	4	72121099	72121099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134742.1	+1	reviewed	p.S79I	1.000	90	0%	44	27.3%	0	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	NULL
SLC4A4	8671	genome.wustl.edu	37	4	72222859	72222859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134742.1	+1	reviewed	p.K229E	1.000	78	0%	61	18%	0	-	possibly_damaging(0.614)	tolerated(0.07)	deleterious(0.532)	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
GC	2638	genome.wustl.edu	37	4	72620768	72620768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000583.2	-1	reviewed	p.V364G	0.003	155	0%	103	30.1%	0	-	possibly_damaging(0.873)	deleterious(0.01)	deleterious(0.745)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ADAMTS3	9508	genome.wustl.edu	37	4	73175219	73175219	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014243.1	-1	reviewed	p.E692*	1.000	159	0%	61	24.6%	0	-	-	-	-	NULL
ADAMTS3	9508	genome.wustl.edu	37	4	73176854	73176854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014243.1	-1	reviewed	p.D656N	0.974	137	0%	35	34.3%	0	-	benign(0.081)	tolerated(0.1)	neutral(0.292)	NULL
ADAMTS3	9508	genome.wustl.edu	37	4	73185111	73185111	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014243.1	-1	reviewed	p.Q430	0.991	75	0%	54	20.4%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS3	9508	genome.wustl.edu	37	4	73186480	73186480	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014243.1	-1	reviewed	p.D351	1.000	269	0.4%	125	31.2%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS3	9508	genome.wustl.edu	37	4	73205297	73205297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014243.1	-1	reviewed	p.E259K	1.000	109	0%	49	30.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS3	9508	genome.wustl.edu	37	4	73414286	73414286	+	Missense_Mutation	SNP	C	C	A	rs788908	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014243.1	-1	reviewed	p.R138I	1.000	190	0%	97	30.9%	0	-	benign(0.003)	tolerated(0.32)	neutral(0.024)	HMMPfam_Pep_M12B_propep
ANKRD17	26057	genome.wustl.edu	37	4	73943112	73943112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032217.3	-1	reviewed	p.Q2516R	1.000	93	0%	100	26%	139	46%	possibly_damaging(0.539)	deleterious(0)	deleterious(0.627)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	73956775	73956775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032217.3	-1	reviewed	p.K2190N	1.000	167	0%	157	30.6%	61	54%	probably_damaging(0.976)	tolerated(0.21)	neutral(0.462)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	73968139	73968139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032217.3	-1	reviewed	p.N1509K	0.989	503	0%	458	28.4%	14	42.8%	possibly_damaging(0.727)	deleterious(0.01)	deleterious(0.670)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74005759	74005759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032217.3	-1	reviewed	p.Q858H	1.000	312	0%	226	35%	8	50%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_Ankyrin repeat
ALB	213	genome.wustl.edu	37	4	74274452	74274452	+	Nonsense_Mutation	SNP	C	C	T	rs77238412	byCluster;byFrequency	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000477.5	+1	reviewed	p.R138*	0.000	84	0%	96	10.4%	0	-	-	-	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
AFM	173	genome.wustl.edu	37	4	74367576	74367576	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001133.2	+1	reviewed	p.F573	0.001	187	0%	57	66.7%	1	100%	-	-	-	PatternScan_ALBUMIN,superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
RASSF6	166824	genome.wustl.edu	37	4	74442009	74442009	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201431.1	-1	validated	p.A351	0.079	264	0%	106	34.9%	1	100%	-	-	-	NULL
CXCL5	6374	genome.wustl.edu	37	4	74863977	74863977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002994.3	-1	reviewed	p.I63S	0.827	124	0%	181	31.5%	0	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	HMMPfam_IL8,HMMSmart_SM00199,superfamily_Interleukin 8-like chemokines,PatternScan_SMALL_CYTOKINES_CXC
EPGN	255324	genome.wustl.edu	37	4	75178810	75178810	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000446430	+1	known	p.I86V	1.000	410	0%	189	37.6%	0	-	-	-	-	NULL
EREG	2069	genome.wustl.edu	37	4	75248494	75248494	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001432.2	+1	validated	p.T137	0.011	225	0%	137	33.6%	0	-	-	-	-	NULL
BTC	685	genome.wustl.edu	37	4	75681142	75681142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001729.2	-1	reviewed	p.P70S	1.000	281	0%	164	30.5%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
BTC	685	genome.wustl.edu	37	4	75695353	75695353	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000512743	-1	known	p.F5S	1.000	85	0%	39	25.6%	0	-	-	-	-	NULL
PARM1	25849	genome.wustl.edu	37	4	75937876	75937876	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015393.2	+1	validated	p.S95	0.000	146	0%	149	36.9%	4	0%	-	-	-	NULL
G3BP2	9908	genome.wustl.edu	37	4	76571617	76571617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012297.4	-1	validated	p.R361C	1.000	138	0%	56	41.1%	26	26.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PPEF2	5470	genome.wustl.edu	37	4	76813023	76813023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006239.2	-1	reviewed	p.G55V	1.000	39	0%	29	27.6%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
NUP54	53371	genome.wustl.edu	37	4	77045813	77045813	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017426.2	-1	reviewed	p.R385	1.000	281	0%	283	33.6%	34	50%	-	-	-	NULL
NUP54	53371	genome.wustl.edu	37	4	77057458	77057458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017426.2	-1	reviewed	p.D135N	1.000	123	0%	148	30.4%	21	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC158	339965	genome.wustl.edu	37	4	77324342	77324342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042784.1	-1	validated	p.E7K	0.982	309	0%	136	29.4%	0	-	benign(0.146)	deleterious(0)	neutral(0.457)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79254556	79254556	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508900	+1	known	p.*599Q	0.001	119	0%	52	34.6%	13	76.9%	-	-	-	HMMSmart_SM00261,superfamily_Growth factor receptor domain
FRAS1	80144	genome.wustl.edu	37	4	79394602	79394602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025074.6	+1	reviewed	p.N2510K	1.000	219	0%	100	14%	14	21.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79399013	79399013	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000512123	+1	known	p.H861N	1.000	107	0%	39	33.3%	18	44.4%	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
FRAS1	80144	genome.wustl.edu	37	4	79458157	79458157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025074.6	+1	reviewed	p.L3700I	1.000	121	0%	88	11.4%	11	18.1%	possibly_damaging(0.511)	tolerated(1)	neutral(0.172)	NULL
ANXA3	306	genome.wustl.edu	37	4	79525503	79525503	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005139.2	+1	reviewed	p.R288*	1.000	94	0%	40	27.5%	62	37%	-	-	-	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
GK2	2712	genome.wustl.edu	37	4	80328315	80328315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033214.2	-1	validated	p.R347I	0.268	166	0%	225	30.7%	0	-	benign(0.013)	tolerated(0.15)	neutral(0.241)	HMMPfam_FGGY_C,superfamily_SSF53067
GK2	2712	genome.wustl.edu	37	4	80329126	80329126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033214.2	-1	validated	p.E77K	0.027	209	0%	253	36.8%	0	-	benign(0)	tolerated(0.92)	-	HMMPfam_FGGY_N,superfamily_SSF53067
FGF5	2250	genome.wustl.edu	37	4	81196127	81196127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004464.3	+1	reviewed	p.K140N	1.000	250	0%	162	34%	0	-	benign(0.039)	tolerated(0.09)	neutral(0.298)	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
PRKG2	5593	genome.wustl.edu	37	4	82056314	82056314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006259.1	-1	provisional	p.K591E	1.000	190	0%	90	23.3%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
HNRNPD	3184	genome.wustl.edu	37	4	83278508	83278508	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000514671	-1	known	p.E141*	1.000	308	0%	170	20.6%	299	29%	possibly_damaging(0.921)	deleterious(0.02)	deleterious(0.754)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ENOPH1	58478	genome.wustl.edu	37	4	83375977	83375977	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021204.3	+1	validated	p.F164	0.999	316	0%	282	34.4%	132	43.1%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like
TMEM150C	441027	genome.wustl.edu	37	4	83411219	83411219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080506.1	-1	provisional	p.V179A	1.000	139	0%	83	28.9%	6	66.6%	benign(0.028)	deleterious(0)	neutral(0.446)	HMMPfam_Frag1
SEC31A	22872	genome.wustl.edu	37	4	83793140	83793140	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077207.1	-1	reviewed	p.R247*	1.000	56	0%	39	28.2%	40	10%	-	-	-	superfamily_WD40 repeat-like
SEC31A	22872	genome.wustl.edu	37	4	83796937	83796937	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077207.1	-1	reviewed	p.I147	1.000	153	0%	97	28.9%	18	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
THAP9	79725	genome.wustl.edu	37	4	83838159	83838159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024672.4	+1	validated	p.R265Q	0.443	151	0%	96	37.5%	1	100%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
THAP9	79725	genome.wustl.edu	37	4	83840028	83840028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024672.4	+1	validated	p.S888I	0.492	44	0%	26	50%	3	33.3%	unknown(0)	-	-	NULL
HPSE	10855	genome.wustl.edu	37	4	84222214	84222214	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098540.1	-1	validated	p.L457	0.782	158	0%	86	36%	2	0%	-	-	-	NULL
HELQ	113510	genome.wustl.edu	37	4	84374658	84374658	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133636.2	-1	validated	p.N246K	0.000	227	0%	171	14.6%	9	22.2%	benign(0)	tolerated(1)	-	NULL
AGPAT9	84803	genome.wustl.edu	37	4	84518018	84518018	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032717.3	+1	validated	p.E288*	1.000	152	0%	59	33.9%	0	-	-	-	-	HMMPfam_Acyltransferase,HMMSmart_PlsC
CDS1	1040	genome.wustl.edu	37	4	85562129	85562129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001263.3	+1	reviewed	p.A340S	0.732	119	0%	121	9.1%	14	14.2%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_CTP_transf_1
WDFY3	23001	genome.wustl.edu	37	4	85609264	85609264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014991.4	-1	reviewed	p.S3173Y	1.000	98	0%	63	30.2%	21	42.8%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDFY3	23001	genome.wustl.edu	37	4	85614055	85614055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014991.4	-1	reviewed	p.S3011Y	1.000	165	0%	80	28.7%	6	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
WDFY3	23001	genome.wustl.edu	37	4	85623569	85623569	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014991.4	-1	reviewed	p.E2845*	1.000	81	0%	129	41.1%	9	33.3%	-	-	-	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
PTPN13	5783	genome.wustl.edu	37	4	87622523	87622523	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080685.2	+1	reviewed	p.F255C	1.000	86	0%	75	13.3%	1	0%	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
SLC10A6	345274	genome.wustl.edu	37	4	87745009	87745009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_197965.2	-1	validated	p.K322N	0.000	246	0%	115	33%	0	-	benign(0.019)	tolerated(0.51)	neutral(0.010)	NULL
SLC10A6	345274	genome.wustl.edu	37	4	87769918	87769918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_197965.2	-1	validated	p.F117L	1.000	30	0%	25	44%	0	-	benign(0.001)	tolerated(0.45)	neutral(0.012)	HMMPfam_SBF
AFF1	4299	genome.wustl.edu	37	4	88053513	88053513	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005935.2	+1	validated	p.F1081	0.753	99	0%	65	38.5%	7	57.1%	-	-	-	HMMPfam_AF-4
SPARCL1	8404	genome.wustl.edu	37	4	88411497	88411497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128310.1	-1	validated	p.A487T	1.000	186	0%	98	36.7%	92	29.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors
DSPP	1834	genome.wustl.edu	37	4	88534971	88534971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014208.3	+1	reviewed	p.R386I	0.921	89	0%	65	21.5%	0	-	probably_damaging(0.991)	-	-	NULL
SPP1	6696	genome.wustl.edu	37	4	88903850	88903850	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040058.1	+1	validated	p.K249N	0.000	105	0%	73	24.7%	407	0%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	HMMPfam_Osteopontin,HMMSmart_SM00017
HERC6	55008	genome.wustl.edu	37	4	89345090	89345090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017912.3	+1	validated	p.D598Y	0.012	79	0%	41	29.3%	4	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
HERC6	55008	genome.wustl.edu	37	4	89361107	89361107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017912.3	+1	validated	p.F879L	1.000	124	0%	75	37.3%	9	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC5	51191	genome.wustl.edu	37	4	89415335	89415335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016323.2	+1	reviewed	p.R766I	0.334	172	0.6%	80	28.7%	8	0%	benign(0.01)	tolerated(0.12)	neutral(0.261)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC5	51191	genome.wustl.edu	37	4	89426885	89426885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016323.2	+1	reviewed	p.F977L	0.116	63	0%	38	34.2%	3	33.3%	benign(0.085)	tolerated(0.08)	neutral(0.306)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC5	51191	genome.wustl.edu	37	4	89426939	89426939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016323.2	+1	reviewed	p.F995L	0.065	72	0%	50	30%	4	25%	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
NAP1L5	266812	genome.wustl.edu	37	4	89618726	89618726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153757.2	-1	validated	p.E60D	0.079	84	0%	159	11.3%	4	25%	benign(0.044)	tolerated(0.8)	neutral(0.003)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89652542	89652542	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014883.2	-1	validated	p.E961*	1.000	49	0%	38	31.6%	2	50%	-	-	-	NULL
FAM13A	10144	genome.wustl.edu	37	4	89950704	89950704	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014883.2	-1	validated	p.G42*	1.000	177	0%	146	28.1%	1	0%	-	-	-	superfamily_Rho_GAP
TIGD2	166815	genome.wustl.edu	37	4	90034163	90034163	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145715.2	+1	reviewed	p.K13T	1.000	116	0%	234	38%	6	33.3%	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	HMMPfam_CENP-B_N,superfamily_Homeodomain_like
TIGD2	166815	genome.wustl.edu	37	4	90034798	90034798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145715.2	+1	reviewed	p.L225I	1.000	51	0%	80	37.5%	13	38.4%	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_DDE
FAM190A	401145	genome.wustl.edu	37	4	91229821	91229821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145065.1	+1	validated	p.R129I	1.000	98	0%	39	23.1%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM190A	401145	genome.wustl.edu	37	4	91234136	91234136	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145065.1	+1	validated	p.E483*	0.929	70	0%	58	29.3%	3	33.3%	-	-	-	NULL
FAM190A	401145	genome.wustl.edu	37	4	91321219	91321219	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145065.1	+1	validated	p.L514	0.998	468	0.2%	381	33.1%	3	100%	-	-	-	NULL
GRID2	2895	genome.wustl.edu	37	4	94436497	94436497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001510.2	+1	validated	p.R710W	1.000	71	0%	53	30.2%	0	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRID2	2895	genome.wustl.edu	37	4	94547443	94547443	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001510.2	+1	validated	p.F739	1.000	243	0%	289	27.7%	2	0%	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRID2	2895	genome.wustl.edu	37	4	94690530	94690530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001510.2	+1	validated	p.L844I	0.996	164	0%	78	35.9%	0	-	benign(0.035)	tolerated(0.1)	neutral(0.288)	HMMPfam_Lig_chan
GRID2	2895	genome.wustl.edu	37	4	94693587	94693587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001510.2	+1	validated	p.Q988K	1.000	77	0%	48	14.6%	0	-	possibly_damaging(0.706)	deleterious(0)	deleterious(0.699)	NULL
ATOH1	474	genome.wustl.edu	37	4	94750656	94750656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005172.1	+1	reviewed	p.K193N	1.000	31	0%	50	34%	0	-	possibly_damaging(0.793)	deleterious(0)	deleterious(0.742)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
SMARCAD1	56916	genome.wustl.edu	37	4	95199797	95199797	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128429.1	+1	validated	p.R737*	0.073	152	0%	148	30.4%	23	13%	-	-	-	HMMPfam_SNF2_N
ADH1C	126	genome.wustl.edu	37	4	100260858	100260858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000669.3	-1	reviewed	p.E327K	1.000	157	0%	81	28.4%	0	-	benign(0.028)	deleterious(0.05)	neutral(0.347)	superfamily_GroES-like,HMMPfam_ADH_zinc_N
ADH7	131	genome.wustl.edu	37	4	100349293	100349293	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000673.4	-1	reviewed	p.E112*	0.988	151	0%	83	36.1%	0	-	-	-	-	superfamily_GroES_like,HMMPfam_ADH_N
RG9MTD2	93587	genome.wustl.edu	37	4	100472065	100472065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134665.1	-1	validated	p.R243Q	1.000	239	0%	85	32.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA_m1G_MT
SLC39A8	64116	genome.wustl.edu	37	4	103225594	103225594	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135146.1	-1	reviewed	p.E240	0.999	178	0%	70	17.1%	35	20%	-	-	-	HMMPfam_Zip
UBE2D3	7323	genome.wustl.edu	37	4	103722616	103722616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181893.1	-1	reviewed	p.S102Y	1.000	195	0%	59	28.8%	203	37.9%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
SLC9B2	133308	genome.wustl.edu	37	4	103968266	103968266	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178833.4	-1	validated	p.F277	0.797	66	0%	29	37.9%	3	0%	-	-	-	HMMPfam_Na_H_Exchanger
BDH2	56898	genome.wustl.edu	37	4	104000908	104000908	+	Missense_Mutation	SNP	G	G	T	rs56124221	byCluster	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020139.3	-1	validated	p.A230D	1.000	118	0%	150	22%	107	33.6%	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	superfamily_NAD(P)-binding Rossmann-fold domains
CENPE	1062	genome.wustl.edu	37	4	104065621	104065621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001813.2	-1	validated	p.T1671I	0.929	279	0%	276	36.2%	8	37.5%	probably_damaging(0.982)	tolerated(0.61)	neutral(0.430)	NULL
CENPE	1062	genome.wustl.edu	37	4	104068637	104068637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001813.2	-1	validated	p.F1337C	1.000	394	0%	281	31%	4	25%	benign(0.34)	deleterious(0.03)	deleterious(0.472)	NULL
CENPE	1062	genome.wustl.edu	37	4	104070113	104070113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001813.2	-1	validated	p.L1244R	0.796	261	0%	170	35.3%	5	40%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
TET2	54790	genome.wustl.edu	37	4	106193807	106193807	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127208.1	+1	validated	p.V1423	0.998	133	0%	57	36.8%	3	66.6%	-	-	-	NULL
TET2	54790	genome.wustl.edu	37	4	106196499	106196499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127208.1	+1	validated	p.S1611Y	1.000	115	0%	60	41.7%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENSG00000245205	0	genome.wustl.edu	37	4	106406787	106406787	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501580	-1	novel	NULL	1.000	14	0.000	9	0.556	1525	0%	-	-	-	-
INTS12	57117	genome.wustl.edu	37	4	106613190	106613190	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142471.1	-1	validated	p.A200	1.000	99	0%	81	28.4%	27	40.7%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
GSTCD	79807	genome.wustl.edu	37	4	106746946	106746946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031720.2	+1	validated	p.F507L	0.997	169	0%	90	31.1%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TBCK	93627	genome.wustl.edu	37	4	107157562	107157562	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033115.3	-1	validated	p.F382	1.000	132	0%	61	42.6%	16	62.5%	-	-	-	superfamily_RabGAP_TBC
AIMP1	9255	genome.wustl.edu	37	4	107249372	107249372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142416.1	+1	reviewed	p.K145N	1.000	81	0%	97	25.8%	119	63%	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
CYP2U1	113612	genome.wustl.edu	37	4	108866286	108866286	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183075.2	+1	reviewed	p.P217	1.000	175	0%	97	30.9%	5	60%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
SEC24B	10427	genome.wustl.edu	37	4	110441582	110441582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006323.2	+1	reviewed	p.F729L	1.000	151	0%	119	35.3%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24
LOC389217	389217	genome.wustl.edu	37	4	110474711	110474711	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001717714.1	-1	model	p.T193	0.966	16	0%	23	30.4%	1	0%	-	-	-	HMMPfam_NAP
CASP6	839	genome.wustl.edu	37	4	110618908	110618908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001226.3	-1	reviewed	p.A34T	0.017	268	0%	308	27.9%	28	46.4%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
CFI	3426	genome.wustl.edu	37	4	110662139	110662139	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000204.3	-1	reviewed	p.E554	0.539	133	0%	80	28.7%	147	46.9%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
EGF	1950	genome.wustl.edu	37	4	110901288	110901288	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001963.4	+1	reviewed	p.A738	1.000	164	0%	70	38.6%	1	100%	-	-	-	superfamily_SSF63825
EGF	1950	genome.wustl.edu	37	4	110929323	110929323	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001963.4	+1	reviewed	p.E1103*	0.995	132	0%	88	36.4%	0	-	-	-	-	NULL
ELOVL6	79071	genome.wustl.edu	37	4	110980799	110980799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130721.1	-1	validated	p.F111L	1.000	78	0%	68	14.7%	3	0%	benign(0.045)	tolerated(0.17)	neutral(0.061)	HMMPfam_ELO
ENPEP	2028	genome.wustl.edu	37	4	111434689	111434689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001977.3	+1	validated	p.G476V	0.998	164	0%	116	38.8%	1	0%	probably_damaging(0.978)	tolerated(0.05)	deleterious(0.766)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
ENPEP	2028	genome.wustl.edu	37	4	111464031	111464031	+	Silent	SNP	C	C	A	rs150450748		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001977.3	+1	validated	p.S644	0.000	208	0%	101	32.7%	2	0%	-	-	-	NULL
C4orf21	55345	genome.wustl.edu	37	4	113468518	113468518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000505019	-1	known	p.P1841S	0.995	96	0%	100	13%	15	13.3%	benign(0.049)	deleterious(0.02)	neutral(0.386)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C4orf21	55345	genome.wustl.edu	37	4	113508700	113508700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000505019	-1	known	p.F1171L	0.004	108	0%	52	32.7%	2	0%	benign(0)	tolerated(1)	-	NULL
ANK2	287	genome.wustl.edu	37	4	114275038	114275038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001148.4	+1	reviewed	p.S1755Y	1.000	60	0%	39	38.5%	0	-	probably_damaging(1)	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114277351	114277351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001148.4	+1	reviewed	p.S2526L	0.997	72	0%	25	36%	0	-	probably_damaging(0.991)	-	-	NULL
ANK2	287	genome.wustl.edu	37	4	114278701	114278701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001148.4	+1	reviewed	p.S2976F	0.179	113	0%	50	24%	0	-	probably_damaging(0.991)	-	-	NULL
UGT8	7368	genome.wustl.edu	37	4	115544340	115544340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128174.1	+1	validated	p.E102K	1.000	177	0%	135	26.7%	5	60%	possibly_damaging(0.791)	tolerated(0.26)	neutral(0.331)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
NDST4	64579	genome.wustl.edu	37	4	115997223	115997223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022569.1	-1	provisional	p.D324Y	1.000	92	0%	51	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NDST4	64579	genome.wustl.edu	37	4	115997734	115997734	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022569.1	-1	provisional	p.Y153*	1.000	86	0%	34	35.3%	0	-	-	-	-	NULL
NDST4	64579	genome.wustl.edu	37	4	115997920	115997920	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022569.1	-1	provisional	p.L91	0.028	149	0%	57	36.8%	0	-	-	-	-	NULL
TRAM1L1	133022	genome.wustl.edu	37	4	118005452	118005452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152402.2	-1	validated	p.E366D	1.000	146	0%	196	12.8%	1	0%	benign(0.032)	tolerated(0.24)	neutral(0.039)	NULL
TRAM1L1	133022	genome.wustl.edu	37	4	118006380	118006380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152402.2	-1	validated	p.V57A	0.005	57	0%	103	30.1%	11	36.3%	possibly_damaging(0.888)	deleterious(0.03)	deleterious(0.712)	HMMPfam_TRAM1
NDST3	9348	genome.wustl.edu	37	4	118975799	118975799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004784.2	+1	reviewed	p.S245Y	0.916	244	0%	152	11.8%	0	-	possibly_damaging(0.449)	tolerated(0.98)	neutral(0.147)	NULL
NDST3	9348	genome.wustl.edu	37	4	119026194	119026194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004784.2	+1	reviewed	p.L335I	1.000	153	0%	110	24.5%	0	-	benign(0.011)	tolerated(0.35)	neutral(0.021)	NULL
PRSS12	8492	genome.wustl.edu	37	4	119204001	119204001	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003619.2	-1	reviewed	p.G769*	1.000	157	0%	178	37.1%	12	25%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SYNPO2	171024	genome.wustl.edu	37	4	119948252	119948252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133477.2	+1	validated	p.S243L	0.013	56	0%	36	27.8%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119951838	119951838	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000504178	+1	known	p.F588L	0.000	117	0%	84	13.1%	6	0%	-	-	-	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119953038	119953038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133477.2	+1	validated	p.F1036L	0.987	82	0%	65	55.4%	7	0%	benign(0.274)	tolerated(0.09)	neutral(0.326)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119953152	119953152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133477.2	+1	validated	p.F1074L	1.000	115	0%	98	32.7%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
USP53	54532	genome.wustl.edu	37	4	120213657	120213657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019050.2	+1	validated	p.R838I	0.036	95	0%	72	27.8%	25	48%	possibly_damaging(0.462)	tolerated(0.08)	neutral(0.452)	NULL
C4orf3	401152	genome.wustl.edu	37	4	120221635	120221635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000399075	-1	known	p.G152D	0.005	110	0%	218	38.1%	425	40.4%	unknown(0)	tolerated(0.29)	-	NULL
C4orf3	401152	genome.wustl.edu	37	4	120225572	120225572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000399075	-1	known	p.N10S	0.005	245	0%	291	30.9%	0	-	possibly_damaging(0.615)	-	-	NULL
LOC645513	645513	genome.wustl.edu	37	4	120381922	120381922	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_078309.1	+1	model	NULL	1.000	105	0%	91	30.8%	12	66.6%	-	-	-	-
NDNF	79625	genome.wustl.edu	37	4	121958403	121958403	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024574.3	-1	validated	p.P241	0.256	245	0%	90	28.9%	0	-	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
QRFPR	84109	genome.wustl.edu	37	4	122250496	122250496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198179.2	-1	validated	p.E423D	0.017	145	0%	71	70.4%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
QRFPR	84109	genome.wustl.edu	37	4	122254085	122254085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198179.2	-1	validated	p.M230V	1.000	130	0%	81	14.8%	0	-	possibly_damaging(0.653)	tolerated(0.06)	deleterious(0.552)	HMMPfam_7tm_1,superfamily_SSF81321
TMEM155	132332	genome.wustl.edu	37	4	122683029	122683029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152399.2	-1	validated	p.D4Y	0.000	132	0%	194	30.4%	0	-	possibly_damaging(0.882)	-	-	NULL
TRPC3	7222	genome.wustl.edu	37	4	122833232	122833232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130698.1	-1	validated	p.R453Q	1.000	108	0%	48	27.1%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123159347	123159347	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000424425	+1	known	p.I1057V	0.997	92	0%	100	30%	6	66.6%	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123159487	123159487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015312.3	+1	reviewed	p.R1272I	1.000	133	0%	107	30.8%	2	50%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123160787	123160787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015312.3	+1	reviewed	p.R1317H	1.000	96	0%	80	31.2%	3	0%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123160916	123160916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015312.3	+1	reviewed	p.R1360I	1.000	74	0%	52	30.8%	5	40%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123193320	123193320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015312.3	+1	reviewed	p.R2736W	1.000	71	0%	38	23.7%	6	50%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123283248	123283248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015312.3	+1	reviewed	p.L4955W	1.000	111	0%	45	20%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FSA_C
ADAD1	132612	genome.wustl.edu	37	4	123301256	123301256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139243.3	+1	validated	p.S11L	0.998	61	0%	133	31.6%	0	-	benign(0.167)	deleterious(0)	neutral(0.460)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123332460	123332460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139243.3	+1	validated	p.S311Y	1.000	137	0%	65	23.1%	0	-	probably_damaging(0.98)	deleterious(0.05)	deleterious(0.769)	HMMPfam_A_deamin,HMMSmart_SM00552
IL2	3558	genome.wustl.edu	37	4	123377510	123377510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000586.3	-1	reviewed	p.K29T	0.001	240	0%	94	42.6%	0	-	benign(0.034)	deleterious(0.03)	neutral(0.366)	HMMPfam_IL2,HMMSmart_SM00189,superfamily_4-helical cytokines
IL21	59067	genome.wustl.edu	37	4	123542067	123542067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021803.2	-1	validated	p.R34C	0.983	184	0%	80	33.8%	2	0%	possibly_damaging(0.803)	deleterious(0)	deleterious(0.747)	NULL
SPATA5	166378	genome.wustl.edu	37	4	123949475	123949475	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145207.2	+1	validated	p.G668	0.982	140	0%	92	31.5%	1	100%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125590747	125590747	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020337.2	-1	validated	p.R1229*	0.978	94	0%	71	32.4%	6	50%	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126242262	126242262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024582.4	+1	validated	p.E1566K	1.000	74	0%	96	38.5%	30	76.6%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126336140	126336140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024582.4	+1	validated	p.R2008W	1.000	75	0%	34	38.2%	8	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126336372	126336372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024582.4	+1	validated	p.I2085T	1.000	110	0%	67	31.3%	6	50%	possibly_damaging(0.671)	deleterious(0.04)	deleterious(0.587)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126370701	126370701	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024582.4	+1	validated	p.R2844*	1.000	72	0%	24	29.2%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126389878	126389878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024582.4	+1	validated	p.F4037L	1.000	91	0%	65	32.3%	19	68.4%	benign(0.02)	tolerated(0.09)	neutral(0.297)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAT4	79633	genome.wustl.edu	37	4	126412182	126412182	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024582.4	+1	validated	p.G4735	0.001	67	0%	58	32.8%	33	75.7%	-	-	-	NULL
INTU	27152	genome.wustl.edu	37	4	128595314	128595314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015693.3	+1	validated	p.V376A	1.000	224	0%	117	34.2%	1	100%	possibly_damaging(0.787)	deleterious(0.01)	deleterious(0.700)	NULL
INTU	27152	genome.wustl.edu	37	4	128627874	128627874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015693.3	+1	validated	p.S674L	0.999	175	0%	80	23.7%	6	33.3%	possibly_damaging(0.571)	deleterious(0.01)	deleterious(0.601)	NULL
INTU	27152	genome.wustl.edu	37	4	128632225	128632225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015693.3	+1	validated	p.R843C	0.996	172	0%	98	32.7%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HSPA4L	22824	genome.wustl.edu	37	4	128722972	128722972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014278.2	+1	provisional	p.L188I	1.000	194	0%	101	36.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70
HSPA4L	22824	genome.wustl.edu	37	4	128724899	128724899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014278.2	+1	provisional	p.S260Y	1.000	131	0%	65	12.3%	1	100%	benign(0.119)	tolerated(0.05)	neutral(0.355)	HMMPfam_HSP70,superfamily_SSF53067
HSPA4L	22824	genome.wustl.edu	37	4	128732660	128732660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014278.2	+1	provisional	p.R483C	1.000	183	0.5%	89	28.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF100920
PLK4	10733	genome.wustl.edu	37	4	128807525	128807525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014264.3	+1	reviewed	p.F334V	0.289	82	0%	53	17%	8	37.5%	benign(0.001)	tolerated(0.51)	neutral(0.009)	superfamily_Kinase_like
LARP1B	55132	genome.wustl.edu	37	4	129043089	129043089	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018078.2	+1	reviewed	p.R424*	0.048	63	0%	32	34.4%	2	0%	-	-	-	NULL
LARP1B	55132	genome.wustl.edu	37	4	129099766	129099766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018078.2	+1	reviewed	p.V622A	1.000	91	0%	37	21.6%	1	0%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
PABPC4L	132430	genome.wustl.edu	37	4	135121213	135121213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114734.1	-1	validated	p.R321I	1.000	163	0%	270	28.9%	2	100%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PABPC4L	132430	genome.wustl.edu	37	4	135122103	135122103	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114734.1	-1	validated	p.D24	0.997	63	0%	86	25.6%	8	62.5%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PCDH18	54510	genome.wustl.edu	37	4	138453159	138453159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019035.3	-1	reviewed	p.K28N	1.000	186	0%	56	26.8%	3	33.3%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Cadherin_2
ELF2	1998	genome.wustl.edu	37	4	139983209	139983209	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201999.1	-1	validated	p.N194H	1.000	116	0%	63	11.1%	5	0%	benign(0.378)	deleterious(0.01)	deleterious(0.526)	superfamily_SSF46785
ELF2	1998	genome.wustl.edu	37	4	140058792	140058792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201999.1	-1	validated	p.N22H	1.000	181	0%	132	35.6%	9	33.3%	benign(0.053)	deleterious(0.01)	neutral(0.409)	NULL
C4orf49	84709	genome.wustl.edu	37	4	140196544	140196544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032623.3	-1	validated	p.S29A	0.998	91	0%	154	32.5%	1	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
NAA15	80155	genome.wustl.edu	37	4	140272760	140272760	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_057175.3	+1	validated	p.E337*	1.000	71	0%	78	34.6%	2	0%	-	-	-	superfamily_TPR-like
SETD7	80854	genome.wustl.edu	37	4	140468074	140468074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030648.2	-1	validated	p.S57I	1.000	96	0%	117	27.4%	5	0%	unknown(0)	-	-	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
INPP4B	8821	genome.wustl.edu	37	4	143029297	143029297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101669.1	-1	reviewed	p.E775K	1.000	187	0%	96	30.2%	0	-	possibly_damaging(0.884)	tolerated(0.71)	neutral(0.346)	NULL
USP38	84640	genome.wustl.edu	37	4	144124582	144124582	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032557.5	+1	validated	p.L358V	0.503	254	0%	132	34.1%	13	46.1%	benign(0.227)	deleterious(0.01)	neutral(0.428)	NULL
SMARCA5	8467	genome.wustl.edu	37	4	144464780	144464780	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003601.2	+1	reviewed	p.I674	0.917	93	0%	41	9.8%	59	27.1%	-	-	-	superfamily_SSF52540
SMARCA5	8467	genome.wustl.edu	37	4	144467183	144467183	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003601.2	+1	reviewed	p.E835*	1.000	64	0%	26	23.1%	28	3.5%	-	-	-	HMMPfam_HAND,superfamily_Nucl_remodel_ATPase_ISWI_HAND,superfamily_SSF52540
FREM3	166752	genome.wustl.edu	37	4	144618286	144618286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000329798	-1	known	p.F1181L	1.000	166	0%	248	28.2%	0	-	benign(0.009)	tolerated(1)	neutral(0.001)	NULL
FREM3	166752	genome.wustl.edu	37	4	144618415	144618415	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000329798	-1	known	p.A1138	0.943	137	0%	153	25.5%	0	-	-	-	-	NULL
FREM3	166752	genome.wustl.edu	37	4	144618712	144618712	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000329798	-1	known	p.L1039	0.634	91	0%	136	32.4%	0	-	-	-	-	NULL
FREM3	166752	genome.wustl.edu	37	4	144618852	144618852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000329798	-1	known	p.K993E	0.971	106	0%	172	9.9%	0	-	benign(0.245)	tolerated(0.62)	neutral(0.029)	NULL
GYPA	2993	genome.wustl.edu	37	4	145061771	145061771	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002099.5	-1	reviewed	p.I6	0.000	229	0%	91	8.8%	0	-	-	-	-	NULL
HHIP	64399	genome.wustl.edu	37	4	145580934	145580934	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022475.1	+1	reviewed	p.E259*	1.000	99	0%	56	37.5%	2	50%	-	-	-	superfamily_Soluble quinoprotein glucose dehydrogenase
ABCE1	6059	genome.wustl.edu	37	4	146032180	146032180	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040876.1	+1	reviewed	p.F225C	1.000	245	0%	127	47.2%	42	47.6%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
OTUD4	54726	genome.wustl.edu	37	4	146067458	146067458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102653.1	-1	reviewed	p.E396D	1.000	141	0%	100	34%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OTUD4	54726	genome.wustl.edu	37	4	146077089	146077089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102653.1	-1	reviewed	p.E165A	1.000	95	0%	59	22%	6	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
OTUD4	54726	genome.wustl.edu	37	4	146095839	146095839	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102653.1	-1	reviewed	p.R8*	1.000	163	0%	214	22.9%	4	25%	-	-	-	HMMPfam_OTU,superfamily_SSF54001
MMAA	166785	genome.wustl.edu	37	4	146575266	146575266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172250.2	+1	reviewed	p.R314C	0.999	127	0%	130	24.6%	10	30%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_ArgK,superfamily_P-loop containing nucleoside triphosphate hydrolases
C4orf51	646603	genome.wustl.edu	37	4	146601423	146601423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080531.1	+1	inferred	p.F23C	0.964	126	0%	111	18.9%	0	-	probably_damaging(0.989)	-	-	NULL
ZNF827	152485	genome.wustl.edu	37	4	146770713	146770713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178835.3	-1	validated	p.A661V	1.000	116	0%	79	34.2%	6	66.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SLC10A7	84068	genome.wustl.edu	37	4	147431081	147431081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029998.3	-1	validated	p.E102K	1.000	100	0%	75	13.3%	4	0%	benign(0.007)	tolerated(0.41)	neutral(0.015)	HMMPfam_SBF
PRMT10	90826	genome.wustl.edu	37	4	148601559	148601559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138364.2	-1	provisional	p.D85Y	1.000	46	0%	83	31.3%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
ARHGAP10	79658	genome.wustl.edu	37	4	148786088	148786088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024605.3	+1	validated	p.K193T	1.000	196	0%	264	30.7%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARHGAP10	79658	genome.wustl.edu	37	4	148787911	148787911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024605.3	+1	validated	p.E216*	1.000	290	0%	299	32.4%	5	0%	-	-	-	NULL
LRBA	987	genome.wustl.edu	37	4	151356750	151356750	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000509835	-1	known	p.L997R	1.000	81	0%	55	16.4%	15	40%	-	-	-	HMMPfam_Beach,superfamily_BEACH domain
LRBA	987	genome.wustl.edu	37	4	151509256	151509256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006726.2	-1	validated	p.E2103K	1.000	65	0%	85	29.4%	14	64.2%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_PH domain-like
TIGD4	201798	genome.wustl.edu	37	4	153690689	153690689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145720.2	-1	reviewed	p.D490Y	0.998	67	0%	79	30.4%	1	0%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
TRIM2	23321	genome.wustl.edu	37	4	154217164	154217164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015271.3	+1	validated	p.E496K	1.000	43	0%	49	40.8%	20	45%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	superfamily_NHL repeat
TLR2	7097	genome.wustl.edu	37	4	154625132	154625132	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003264.3	+1	reviewed	p.H358P	0.001	49	0%	21	42.9%	2	50%	possibly_damaging(0.858)	tolerated(0.12)	deleterious(0.592)	superfamily_SSF52058
DCHS2	54798	genome.wustl.edu	37	4	155155886	155155886	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017639.3	-1	validated	p.P2851	0.000	86	0%	60	21.7%	5	40%	-	-	-	NULL
DCHS2	54798	genome.wustl.edu	37	4	155156578	155156578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017639.3	-1	validated	p.S2621R	0.006	124	0%	62	16.1%	6	16.6%	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
DCHS2	54798	genome.wustl.edu	37	4	155180891	155180891	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017639.3	-1	validated	p.E1744*	1.000	101	0%	55	36.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155237002	155237002	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017639.3	-1	validated	p.E1265*	0.262	169	0%	59	30.5%	3	33.3%	-	-	-	HMMSmart_SM00112,superfamily_Cadherin-like
DCHS2	54798	genome.wustl.edu	37	4	155278400	155278400	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017639.3	-1	validated	p.E257	0.002	136	0%	73	35.6%	0	-	-	-	-	superfamily_Cadherin-like
PLRG1	5356	genome.wustl.edu	37	4	155457862	155457862	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002669.2	-1	provisional	p.E507A	1.000	133	0%	41	34.1%	22	45.4%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_WD40 repeat-like
FGB	2244	genome.wustl.edu	37	4	155488963	155488963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005141.4	+1	reviewed	p.S237P	1.000	74	0%	39	33.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155505313	155505313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000508.3	-1	reviewed	p.A855D	0.002	72	0%	40	22.5%	0	-	probably_damaging(0.986)	tolerated(0.26)	deleterious(0.469)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155507993	155507993	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000508.3	-1	reviewed	p.D196	1.000	146	0%	63	30.2%	0	-	-	-	-	HMMPfam_Fib_alpha
FGA	2243	genome.wustl.edu	37	4	155510071	155510071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000508.3	-1	reviewed	p.D80Y	1.000	189	0%	73	24.7%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_Fib_alpha
LRAT	9227	genome.wustl.edu	37	4	155670267	155670267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004744.3	+1	reviewed	p.F224L	0.932	275	0%	331	27.8%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBM46	166863	genome.wustl.edu	37	4	155719167	155719167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144979.3	+1	validated	p.R119K	0.999	238	0%	200	31.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
MAP9	79884	genome.wustl.edu	37	4	156278604	156278604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039580.1	-1	validated	p.A373V	0.702	279	0%	85	20%	5	100%	benign(0.071)	deleterious(0.02)	neutral(0.388)	NULL
MAP9	79884	genome.wustl.edu	37	4	156294554	156294554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039580.1	-1	validated	p.K72R	0.915	119	0%	156	31.4%	1	100%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
TDO2	6999	genome.wustl.edu	37	4	156830159	156830159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005651.2	+1	validated	p.D142Y	1.000	80	0%	104	31.7%	3	0%	possibly_damaging(0.908)	deleterious(0.01)	deleterious(0.767)	HMMPfam_Trp_dioxygenase
CTSO	1519	genome.wustl.edu	37	4	156849517	156849517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001334.2	-1	reviewed	p.A301V	1.000	141	0%	79	39.2%	13	30.7%	benign(0)	tolerated(1)	-	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
TMEM144	55314	genome.wustl.edu	37	4	159136399	159136399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018342.4	+1	validated	p.N56D	1.000	337	0%	231	29.9%	8	62.5%	benign(0.087)	tolerated(0.25)	neutral(0.043)	HMMPfam_DUF1632
RXFP1	59350	genome.wustl.edu	37	4	159568002	159568002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021634.2	+1	provisional	p.R469C	1.000	177	0%	100	34%	0	-	probably_damaging(0.96)	deleterious(0.03)	deleterious(0.768)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RAPGEF2	9693	genome.wustl.edu	37	4	160263070	160263070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014247.2	+1	validated	p.K802N	1.000	68	0%	59	25.4%	6	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160274695	160274695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014247.2	+1	validated	p.S1222Y	1.000	64	0%	90	32.2%	10	30%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
FSTL5	56884	genome.wustl.edu	37	4	162841563	162841563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020116.3	-1	validated	p.F134L	1.000	173	0%	69	23.2%	18	44.4%	probably_damaging(0.987)	tolerated(0.33)	neutral(0.461)	NULL
NAF1	92345	genome.wustl.edu	37	4	164061412	164061412	+	Missense_Mutation	SNP	C	C	A	rs191160551	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138386.2	-1	validated	p.D281Y	1.000	177	0%	104	13.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAF1
NPY5R	4889	genome.wustl.edu	37	4	164272066	164272066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006174.2	+1	provisional	p.S214F	0.756	89	0%	87	26.4%	0	-	possibly_damaging(0.852)	tolerated(0.2)	neutral(0.377)	HMMPfam_7tm_1,superfamily_SSF81321
ANP32C	23520	genome.wustl.edu	37	4	165118613	165118613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012403.1	-1	reviewed	p.P84Q	1.000	254	0%	187	20.3%	0	-	-	-	-	superfamily_L domain-like
TRIM61	391712	genome.wustl.edu	37	4	165890660	165890660	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012414.2	-1	validated	p.Q165	0.000	530	0%	370	18.4%	0	-	-	-	-	NULL
TRIM75	391714	genome.wustl.edu	37	4	165981353	165981353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000322402	+1	known	p.E352K	1.000	127	0%	74	32.4%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
TRIM75	391714	genome.wustl.edu	37	4	165981568	165981568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000322402	+1	known	p.E423D	0.018	157	0%	74	28.4%	0	-	-	-	-	HMMPfam_SPRY,HMMSmart_SPRY
MSMO1	6307	genome.wustl.edu	37	4	166263098	166263098	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006745.3	+1	reviewed	p.*294Y	0.853	81	0%	48	25%	18	61.1%	-	-	-	NULL
CPE	1363	genome.wustl.edu	37	4	166408598	166408598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001873.2	+1	reviewed	p.D328Y	1.000	160	0%	94	40.4%	69	55%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
TLL1	7092	genome.wustl.edu	37	4	166914030	166914030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012464.3	+1	reviewed	p.G119C	1.000	195	0%	103	33%	0	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	NULL
TLL1	7092	genome.wustl.edu	37	4	166999135	166999135	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012464.3	+1	reviewed	p.E799*	1.000	90	0%	21	33.3%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SPOCK3	50859	genome.wustl.edu	37	4	167656164	167656164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016950.2	-1	validated	p.D407N	0.997	453	0%	280	26.1%	0	-	unknown(0)	tolerated(0.16)	-	NULL
DDX60	55601	genome.wustl.edu	37	4	169142976	169142976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017631.5	-1	validated	p.Q1627H	0.001	99	0%	39	46.2%	35	28.5%	benign(0.002)	tolerated(0.55)	neutral(0.007)	NULL
DDX60L	91351	genome.wustl.edu	37	4	169343062	169343062	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012967.1	-1	validated	e16-2	0.985	140	0%	53	32.1%	1	0%	-	-	-	-
DDX60L	91351	genome.wustl.edu	37	4	169369826	169369826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012967.1	-1	validated	p.K367N	0.268	113	0%	118	30.5%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	NULL
ENSG00000206613	0	genome.wustl.edu	37	4	169607834	169607834	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000383886	-1	novel	NULL	0.000	65	0%	116	33.6%	0	-	-	-	-	-
CBR4	84869	genome.wustl.edu	37	4	169923337	169923337	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032783.3	-1	validated	p.K140	1.000	51	0%	51	27.5%	41	46.3%	-	-	-	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
SH3RF1	57630	genome.wustl.edu	37	4	170017783	170017783	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020870.3	-1	reviewed	p.E852*	1.000	208	0%	117	26.5%	30	16.6%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SH3RF1	57630	genome.wustl.edu	37	4	170028269	170028269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020870.3	-1	reviewed	p.E743*	1.000	32	0%	29	27.6%	30	20%	-	-	-	NULL
GALNT7	51809	genome.wustl.edu	37	4	174216610	174216610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017423.2	+1	reviewed	p.R273Q	1.000	140	0%	79	32.9%	17	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT7	51809	genome.wustl.edu	37	4	174219413	174219413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017423.2	+1	reviewed	p.E371D	1.000	87	0%	51	25.5%	8	25%	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
SAP30	8819	genome.wustl.edu	37	4	174294593	174294593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003864.3	+1	reviewed	p.R123Q	1.000	175	0%	329	32.2%	30	33.3%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
MORF4	10934	genome.wustl.edu	37	4	174537669	174537669	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006792.2	-1	validated	p.P42	0.971	205	0%	127	33.1%	0	-	-	-	-	HMMPfam_MRG
FBXO8	26269	genome.wustl.edu	37	4	175180934	175180934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012180.2	-1	reviewed	p.K124N	1.000	85	0%	66	22.7%	17	29.4%	benign(0.025)	deleterious(0.01)	neutral(0.407)	NULL
CEP44	80817	genome.wustl.edu	37	4	175231080	175231080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145314.1	+1	validated	p.S253L	0.000	113	0%	55	25.5%	8	12.5%	benign(0)	tolerated(1)	-	NULL
CEP44	80817	genome.wustl.edu	37	4	175231944	175231944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145314.1	+1	validated	p.F299C	0.000	119	0%	95	34.7%	5	60%	benign(0.057)	tolerated(0.06)	neutral(0.326)	NULL
HPGD	3248	genome.wustl.edu	37	4	175413190	175413190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000860.4	-1	reviewed	p.G240C	1.000	158	0%	139	13.7%	1011	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAM29	11086	genome.wustl.edu	37	4	175898121	175898121	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130703.1	+1	reviewed	p.E482A	0.999	90	0%	52	38.5%	0	-	benign(0.176)	tolerated(0.3)	neutral(0.044)	superfamily_Blood coagulation inhibitor (disintegrin),HMMSmart_SM00608
GPM6A	2823	genome.wustl.edu	37	4	176594881	176594881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005277.3	-1	validated	p.L113F	1.000	86	0%	38	34.2%	8	12.5%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Myelin_PLP
WDR17	116966	genome.wustl.edu	37	4	177056416	177056416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170710.4	+1	reviewed	p.S443Y	1.000	141	0%	66	28.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like
WDR17	116966	genome.wustl.edu	37	4	177071284	177071284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170710.4	+1	reviewed	p.S737Y	0.046	151	0%	76	30.3%	0	-	benign(0.026)	deleterious(0.05)	neutral(0.346)	NULL
WDR17	116966	genome.wustl.edu	37	4	177082079	177082079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170710.4	+1	reviewed	p.N916K	1.000	100	0%	91	31.9%	0	-	probably_damaging(0.964)	tolerated(0.32)	neutral(0.430)	NULL
WDR17	116966	genome.wustl.edu	37	4	177093534	177093534	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000443118	+1	known	p.T311A	0.494	101	0%	81	39.5%	0	-	-	-	-	NULL
WDR17	116966	genome.wustl.edu	37	4	177095772	177095772	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170710.4	+1	reviewed	p.R1157*	1.000	180	0%	151	28.5%	0	-	-	-	-	NULL
ASB5	140458	genome.wustl.edu	37	4	177136836	177136836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080874.2	-1	reviewed	p.R302Q	1.000	222	0%	110	39.1%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_SOCS_box
VEGFC	7424	genome.wustl.edu	37	4	177650803	177650803	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000280193	-1	known	p.K82T	1.000	202	0%	78	33.3%	7	14.2%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183650309	183650309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080477.1	+1	provisional	p.P854S	0.998	114	0%	85	23.5%	0	-	benign(0.022)	tolerated(0.17)	neutral(0.060)	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183652277	183652277	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080477.1	+1	provisional	p.I984	0.974	186	0%	119	28.6%	1	0%	-	-	-	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183658045	183658045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080477.1	+1	provisional	p.L1018I	0.997	144	0%	84	33.3%	0	-	probably_damaging(0.995)	tolerated(0.75)	neutral(0.459)	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183676005	183676005	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080477.1	+1	provisional	p.I1495	1.000	65	0%	55	32.7%	1	0%	-	-	-	HMMPfam_NHL,superfamily_ConA_like_lec_gl,superfamily_SSF101898,superfamily_SSF63829
ODZ3	55714	genome.wustl.edu	37	4	183710487	183710487	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080477.1	+1	provisional	p.I1849S	0.998	132	0%	164	11%	3	0%	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	HMMPfam_RHS_repeat
CDKN2AIP	55602	genome.wustl.edu	37	4	184367501	184367501	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000502924	+1	known	NULL	1.000	77	0%	130	36.2%	15	40%	-	-	-	-
CDKN2AIP	55602	genome.wustl.edu	37	4	184368109	184368109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017632.2	+1	provisional	p.F424L	0.003	117	0%	179	38.5%	12	58.3%	unknown(0)	tolerated(0.23)	-	NULL
CDKN2AIP	55602	genome.wustl.edu	37	4	184368363	184368363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017632.2	+1	provisional	p.S509F	1.000	195	0%	349	33.2%	19	10.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_dsRNA-binding domain-like
TRAPPC11	60684	genome.wustl.edu	37	4	184605359	184605359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021942.4	+1	validated	p.R450Q	1.000	178	0%	159	31.4%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STOX2	56977	genome.wustl.edu	37	4	184932428	184932428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020225.1	+1	provisional	p.D813Y	1.000	57	0%	79	39.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CASP3	836	genome.wustl.edu	37	4	185552221	185552221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004346.3	-1	reviewed	p.D192N	1.000	85	0%	60	25%	41	29.2%	possibly_damaging(0.854)	deleterious(0.04)	deleterious(0.678)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP3	836	genome.wustl.edu	37	4	185553050	185553050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004346.3	-1	reviewed	p.L118I	0.033	206	0%	102	25.5%	29	20.6%	benign(0.026)	tolerated(1)	neutral(0.001)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,superfamily_Caspase-like
CCDC111	201973	genome.wustl.edu	37	4	185599476	185599476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152683.2	+1	validated	p.F312C	1.000	86	0%	51	27.5%	5	60%	possibly_damaging(0.767)	-	-	NULL
ACSL1	2180	genome.wustl.edu	37	4	185678788	185678788	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001995.2	-1	reviewed	e19+1	1.000	180	0%	98	32.7%	2	100%	-	-	-	-
SNX25	83891	genome.wustl.edu	37	4	186260581	186260581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031953.2	+1	validated	p.T491A	0.963	59	0%	44	29.5%	5	40%	benign(0.002)	tolerated(0.12)	neutral(0.261)	superfamily_PX
UFSP2	55325	genome.wustl.edu	37	4	186329436	186329436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018359.3	-1	validated	p.E329*	1.000	144	0%	90	33.3%	21	9.5%	-	-	-	HMMPfam_Peptidase_C78
CCDC110	256309	genome.wustl.edu	37	4	186379328	186379328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152775.3	-1	validated	p.E805K	0.170	123	0%	72	34.7%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186379411	186379411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152775.3	-1	validated	p.K777T	0.930	170	0%	91	33%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
CCDC110	256309	genome.wustl.edu	37	4	186380143	186380143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152775.3	-1	validated	p.S533Y	0.642	331	0%	313	25.9%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186559260	186559260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003603.5	-1	reviewed	p.F293L	1.000	176	0%	352	38.4%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186567890	186567890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021069.4	-1	reviewed	p.R206W	1.000	214	0%	221	34.4%	17	52.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM149A	25854	genome.wustl.edu	37	4	187084671	187084671	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006655.2	+1	validated	p.L309	0.000	94	0%	106	25.5%	10	20%	-	-	-	NULL
KLKB1	3818	genome.wustl.edu	37	4	187172468	187172468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000892.3	+1	reviewed	p.K285R	0.757	135	0%	190	25.8%	0	-	benign(0.002)	tolerated(0.89)	-	NULL
MTNR1A	4543	genome.wustl.edu	37	4	187455253	187455253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005958.3	-1	reviewed	p.L215I	0.799	103	0%	103	30.1%	0	-	benign(0.001)	tolerated(0.83)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAT1	2195	genome.wustl.edu	37	4	187532732	187532732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005245.3	-1	reviewed	p.L3221I	1.000	70	0%	43	39.5%	53	18.8%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187554955	187554955	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005245.3	-1	reviewed	p.F1402	1.000	147	0%	110	28.2%	20	15%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187629400	187629400	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005245.3	-1	reviewed	p.E528*	1.000	78	0%	54	40.7%	6	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187629459	187629459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005245.3	-1	reviewed	p.V508A	1.000	82	0%	61	23%	4	25%	benign(0.042)	tolerated(0.05)	neutral(0.348)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ZFP42	132625	genome.wustl.edu	37	4	188924281	188924281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174900.3	+1	validated	p.S107Y	0.998	98	0%	116	28.4%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
TRIML2	205860	genome.wustl.edu	37	4	189012746	189012746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173553.1	-1	provisional	p.K315N	0.000	97	0%	75	32%	0	-	benign(0.021)	tolerated(0.27)	neutral(0.035)	HMMPfam_SPRY
PLEKHG4B	153478	genome.wustl.edu	37	5	156218	156218	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052909.3	+1	validated	p.T391	0.000	49	0%	105	25.7%	34	41.1%	-	-	-	NULL
SDHA	6389	genome.wustl.edu	37	5	233604	233604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004168.2	+1	reviewed	p.A303V	1.000	146	0%	224	14.3%	210	14.2%	benign(0.077)	tolerated(0.05)	neutral(0.351)	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein catalytic domain
EXOC3	11336	genome.wustl.edu	37	5	462138	462138	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007277.4	+1	reviewed	p.C485*	1.000	87	0%	138	30.4%	50	20%	-	-	-	HMMPfam_Sec6
SLC9A3	6550	genome.wustl.edu	37	5	482708	482708	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004174.2	-1	validated	p.F437	0.888	35	0%	67	28.4%	3	100%	-	-	-	HMMPfam_Na_H_Exchanger
TRIP13	9319	genome.wustl.edu	37	5	896786	896786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004237.3	+1	reviewed	p.D89N	0.933	179	0%	323	30.7%	17	17.6%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
SLC6A19	340024	genome.wustl.edu	37	5	1216961	1216961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003841.2	+1	reviewed	p.E358D	1.000	41	0%	73	27.4%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_SNF
SLC6A19	340024	genome.wustl.edu	37	5	1221824	1221824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003841.2	+1	reviewed	p.F570L	0.997	118	0%	182	10.4%	0	-	probably_damaging(0.999)	tolerated(0.62)	deleterious(0.494)	HMMPfam_SNF
SLC6A3	6531	genome.wustl.edu	37	5	1409232	1409232	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001044.4	-1	reviewed	p.I469	1.000	42	0%	109	29.4%	0	-	-	-	-	HMMPfam_SNF
SLC6A3	6531	genome.wustl.edu	37	5	1416266	1416266	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001044.4	-1	reviewed	p.F326	0.992	80	0%	172	29.1%	0	-	-	-	-	HMMPfam_SNF
IRX2	153572	genome.wustl.edu	37	5	2749569	2749569	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134222.1	-1	validated	p.G194	0.953	203	0%	294	35%	3	0%	-	-	-	NULL
IRX1	79192	genome.wustl.edu	37	5	3600335	3600335	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024337.3	+1	validated	p.G425*	0.006	21	0%	29	17.2%	0	-	-	-	-	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5209294	5209294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139056.2	+1	reviewed	p.A514S	1.000	100	0%	80	38.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5242232	5242232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139056.2	+1	reviewed	p.K864Q	0.110	69	0%	69	30.4%	0	-	benign(0.049)	tolerated(0.64)	neutral(0.006)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5262781	5262781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139056.2	+1	reviewed	p.V892M	0.037	63	0%	75	44%	0	-	benign(0.116)	tolerated(0.15)	neutral(0.250)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
KIAA0947	23379	genome.wustl.edu	37	5	5461042	5461042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015325.1	+1	validated	p.S532F	0.000	105	0%	105	32.4%	9	22.2%	benign(0.002)	tolerated(1)	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5463596	5463596	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015325.1	+1	validated	p.E1383	0.246	38	0%	32	31.2%	22	27.2%	-	-	-	NULL
NSUN2	54888	genome.wustl.edu	37	5	6620247	6620247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017755.4	-1	validated	p.D263Y	1.000	102	0%	78	28.2%	48	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53335
MTRR	4552	genome.wustl.edu	37	5	7878243	7878243	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000510525	+1	known	p.R205*	0.003	112	0.9%	83	33.7%	8	37.5%	-	-	-	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9108301	9108301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003966.2	-1	reviewed	p.A675V	1.000	62	0%	58	32.8%	6	16.6%	possibly_damaging(0.653)	tolerated(1)	neutral(0.230)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SEMA5A	9037	genome.wustl.edu	37	5	9122940	9122940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003966.2	-1	reviewed	p.L537F	1.000	20	0%	27	22.2%	11	27.2%	benign(0.25)	tolerated(0.05)	neutral(0.371)	superfamily_Plexin-like_fold
CMBL	134147	genome.wustl.edu	37	5	10282363	10282363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138809.3	-1	validated	p.K168N	1.000	112	0%	103	35%	35	45.7%	benign(0.006)	tolerated(0.22)	neutral(0.042)	HMMPfam_DLH,superfamily_SSF53474
ROPN1L	83853	genome.wustl.edu	37	5	10450172	10450172	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031916.3	+1	reviewed	p.N122H	0.000	112	0%	191	33%	0	-	possibly_damaging(0.44)	deleterious(0.02)	deleterious(0.526)	NULL
CTNND2	1501	genome.wustl.edu	37	5	11111152	11111152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001332.2	-1	validated	p.V761I	1.000	44	0%	23	34.8%	1	100%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00185,superfamily_ARM repeat
CTNND2	1501	genome.wustl.edu	37	5	11117571	11117571	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001332.2	-1	validated	p.I756	1.000	116	0%	72	38.9%	0	-	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
CTNND2	1501	genome.wustl.edu	37	5	11411748	11411748	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001332.2	-1	validated	p.I113	0.999	125	0.8%	35	28.6%	1	0%	-	-	-	NULL
CTNND2	1501	genome.wustl.edu	37	5	11411753	11411753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001332.2	-1	validated	p.D112Y	1.000	126	1.6%	33	27.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13700881	13700881	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.E4531*	1.000	139	0%	65	36.9%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13716596	13716596	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.Q4303	1.000	117	0%	66	37.9%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13735262	13735262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.E3913D	0.998	127	0%	54	31.5%	0	-	benign(0.002)	tolerated(0.54)	neutral(0.007)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13735295	13735295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.K3902N	1.000	136	0.7%	55	10.9%	0	-	possibly_damaging(0.948)	tolerated(0.12)	deleterious(0.651)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13754448	13754448	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	e62-1	1.000	105	0%	54	35.2%	0	-	-	-	-	-
DNAH5	1767	genome.wustl.edu	37	5	13788895	13788895	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.K2859N	0.187	145	0%	76	18.4%	0	-	benign(0.045)	tolerated(0.3)	neutral(0.031)	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13794156	13794156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.E2633D	1.000	147	0%	97	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13814769	13814769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.R2392I	1.000	79	0%	81	30.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13839571	13839571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.E1926K	1.000	98	0%	71	43.7%	0	-	benign(0.111)	tolerated(0.1)	neutral(0.295)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13841982	13841982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.Q1768R	1.000	111	0%	57	31.6%	0	-	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_DHC_N2
DNAH5	1767	genome.wustl.edu	37	5	13867887	13867887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.D1350V	1.000	98	0%	42	31%	0	-	benign(0.009)	tolerated(0.15)	neutral(0.241)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13900476	13900476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.A700T	1.000	104	0%	65	24.6%	0	-	benign(0.007)	tolerated(0.3)	neutral(0.029)	HMMPfam_DHC_N1
DNAH5	1767	genome.wustl.edu	37	5	13902196	13902196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001369.2	-1	reviewed	p.N566D	1.000	104	0%	48	31.2%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_DHC_N1
TRIO	7204	genome.wustl.edu	37	5	14363897	14363897	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007118.2	+1	validated	p.F816	1.000	94	0%	106	26.4%	12	66.6%	-	-	-	NULL
TRIO	7204	genome.wustl.edu	37	5	14482807	14482807	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007118.2	+1	validated	p.I2194	0.446	115	0%	148	29.7%	27	55.5%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ANKH	56172	genome.wustl.edu	37	5	14749348	14749348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054027.4	-1	reviewed	p.R252I	1.000	112	0%	118	28.8%	53	28.3%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_ANKH
LOC402198	402198	genome.wustl.edu	37	5	14961187	14961187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001716525.1	+1	model	p.H346Q	1.000	17	0%	30	36.7%	0	-	-	-	-	HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like
FBXL7	23194	genome.wustl.edu	37	5	15616178	15616178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012304.3	+1	reviewed	p.E42K	1.000	88	1.1%	53	39.6%	5	20%	benign(0.077)	tolerated(0.19)	neutral(0.055)	NULL
ZNF622	90441	genome.wustl.edu	37	5	16465444	16465444	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033414.2	-1	provisional	p.E111*	0.998	131	0%	225	30.7%	26	0%	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16680187	16680187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012334.2	-1	validated	p.R1471C	1.000	120	0%	65	24.6%	35	34.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
CDH12	1010	genome.wustl.edu	37	5	21755724	21755724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004061.3	-1	reviewed	p.L621I	1.000	108	0%	76	34.2%	2	100%	benign(0.019)	deleterious(0.03)	neutral(0.365)	NULL
CDH12	1010	genome.wustl.edu	37	5	21783593	21783593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004061.3	-1	reviewed	p.D423Y	1.000	222	0%	66	22.7%	2	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PRDM9	56979	genome.wustl.edu	37	5	23509604	23509604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020227.2	+1	provisional	p.S32Y	0.986	320	0%	283	33.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PRDM9	56979	genome.wustl.edu	37	5	23510107	23510107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020227.2	+1	provisional	p.S91Y	0.999	181	0%	183	35.5%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
PRDM9	56979	genome.wustl.edu	37	5	23521195	23521195	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020227.2	+1	provisional	p.L139V	0.000	181	0%	100	32%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CDH10	1008	genome.wustl.edu	37	5	24487810	24487810	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006727.2	-1	reviewed	p.E777*	0.999	122	0%	43	30.2%	0	-	-	-	-	HMMPfam_Cadherin_C
CDH10	1008	genome.wustl.edu	37	5	24509783	24509783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006727.2	-1	reviewed	p.V383A	0.994	152	0%	125	34.4%	0	-	benign(0.146)	tolerated(0.08)	neutral(0.312)	HMMSmart_CA,superfamily_Cadherin
CDH10	1008	genome.wustl.edu	37	5	24537726	24537726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006727.2	-1	reviewed	p.G97R	1.000	157	0%	32	43.8%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH9	1007	genome.wustl.edu	37	5	26902613	26902613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016279.3	-1	reviewed	p.D409N	1.000	143	0%	79	44.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DROSHA	29102	genome.wustl.edu	37	5	31515591	31515591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013235.4	-1	validated	p.S343Y	1.000	57	0%	24	16.7%	8	25%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
C5orf22	55322	genome.wustl.edu	37	5	31538513	31538513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018356.2	+1	validated	p.S175Y	0.922	70	0%	60	10%	8	25%	possibly_damaging(0.716)	deleterious(0.01)	deleterious(0.665)	NULL
C5orf22	55322	genome.wustl.edu	37	5	31538782	31538782	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018356.2	+1	validated	p.E265*	1.000	125	0%	69	34.8%	3	0%	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	31799712	31799712	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178140.2	+1	reviewed	p.I119	1.000	75	0%	83	26.5%	0	-	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
PDZD2	23037	genome.wustl.edu	37	5	31799770	31799770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178140.2	+1	reviewed	p.R139W	1.000	88	0%	90	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00228,superfamily_PDZ domain-like
PDZD2	23037	genome.wustl.edu	37	5	32088637	32088637	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178140.2	+1	reviewed	p.E1695*	0.001	58	0%	97	33%	2	0%	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32088901	32088901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178140.2	+1	reviewed	p.L1783M	0.001	97	0%	142	22.5%	0	-	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	NULL
MTMR12	54545	genome.wustl.edu	37	5	32248893	32248893	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040446.1	-1	reviewed	p.K294T	1.000	131	0%	96	34.4%	14	28.5%	probably_damaging(0.991)	tolerated(0.39)	neutral(0.460)	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
MTMR12	54545	genome.wustl.edu	37	5	32274182	32274182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040446.1	-1	reviewed	p.Q63H	1.000	117	0%	76	27.6%	22	45.4%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_PH domain-like
ZFR	51663	genome.wustl.edu	37	5	32397417	32397417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016107.3	-1	validated	p.R581W	1.000	149	0%	87	33.3%	47	51%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TARS	6897	genome.wustl.edu	37	5	33458708	33458708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152295.3	+1	reviewed	p.G341V	1.000	332	0%	139	31.7%	79	48.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Class II aaRS and biotin synthetases
ADAMTS12	81792	genome.wustl.edu	37	5	33535030	33535030	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030955.2	-1	reviewed	p.K1505T	0.191	186	0%	119	31.9%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TTC23L	153657	genome.wustl.edu	37	5	34850317	34850317	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144725.3	+1	validated	p.R95*	1.000	133	0.8%	62	22.6%	0	-	-	-	-	NULL
RAD1	5810	genome.wustl.edu	37	5	34908820	34908820	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026591.1	-1	reviewed	NULL	0.000	48	0%	47	36.2%	14	35.7%	-	-	-	-
RAD1	5810	genome.wustl.edu	37	5	34908989	34908989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002853.3	-1	reviewed	p.R244W	1.000	72	0%	74	37.8%	27	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rad1,superfamily_DNA clamp
BRIX1	55299	genome.wustl.edu	37	5	34925334	34925334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018321.3	+1	validated	p.R266W	1.000	29	0%	38	52.6%	63	39.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRLR	5618	genome.wustl.edu	37	5	35072709	35072709	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000949.4	-1	validated	p.R171*	1.000	184	0%	126	9.5%	30	0%	-	-	-	PatternScan_HEMATOPO_REC_L_F1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SPEF2	79925	genome.wustl.edu	37	5	35694416	35694416	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024867.3	+1	validated	p.G642	0.000	184	0%	74	27%	3	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SPEF2	79925	genome.wustl.edu	37	5	35740278	35740278	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024867.3	+1	validated	p.F1080C	1.000	206	0%	103	28.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
UGT3A1	133688	genome.wustl.edu	37	5	35965650	35965650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152404.3	-1	validated	p.E227D	0.966	148	0%	90	37.8%	0	-	possibly_damaging(0.767)	deleterious(0.04)	deleterious(0.633)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT3A2	167127	genome.wustl.edu	37	5	36037940	36037940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174914.3	-1	validated	p.E418D	0.630	136	0%	191	28.8%	1	0%	benign(0.008)	tolerated(0.32)	neutral(0.024)	HMMPfam_UDPGT,superfamily_SSF53756
LMBRD2	92255	genome.wustl.edu	37	5	36111272	36111272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007527.1	-1	validated	p.E577*	1.000	111	0%	58	27.6%	1	0%	-	-	-	NULL
LMBRD2	92255	genome.wustl.edu	37	5	36122537	36122537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007527.1	-1	validated	p.R322Q	1.000	76	0%	39	33.3%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_LMBR1
SKP2	6502	genome.wustl.edu	37	5	36168422	36168422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005983.2	+1	reviewed	p.R182C	0.987	231	0%	107	28%	40	55%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_RNI-like
SLC1A3	6507	genome.wustl.edu	37	5	36629649	36629649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004172.4	+1	reviewed	p.Q93H	1.000	324	0%	164	34.8%	6	16.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1
NIPBL	25836	genome.wustl.edu	37	5	36976132	36976132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133433.3	+1	reviewed	p.D375N	1.000	120	0.8%	91	45.1%	10	40%	probably_damaging(0.97)	tolerated(0.06)	deleterious(0.735)	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37022485	37022485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133433.3	+1	reviewed	p.R1856I	1.000	184	0%	173	25.4%	17	52.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37157783	37157783	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023073.3	-1	predicted	p.F1547C	0.000	92	0%	112	30.4%	2	0%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37245882	37245882	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508244	-1	known	p.K49	0.888	150	0%	213	33.3%	1	0%	-	-	-	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38407018	38407018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152403.2	+1	validated	p.S306Y	0.110	213	0%	115	32.2%	1	0%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
EGFLAM	133584	genome.wustl.edu	37	5	38412682	38412682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152403.2	+1	validated	p.L476I	0.142	71	0%	37	43.2%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1
LIFR	3977	genome.wustl.edu	37	5	38493714	38493714	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127671.1	-1	reviewed	p.E687*	0.897	72	0%	65	23.1%	0	-	-	-	-	superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38510734	38510734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127671.1	-1	reviewed	p.E275*	0.258	91	0%	40	42.5%	0	-	-	-	-	NULL
LIFR	3977	genome.wustl.edu	37	5	38530697	38530697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127671.1	-1	reviewed	p.K18R	0.000	136	0%	47	25.5%	0	-	benign(0.006)	tolerated(0.08)	neutral(0.300)	NULL
OSMR	9180	genome.wustl.edu	37	5	38924617	38924617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003999.2	+1	reviewed	p.G655D	0.117	131	0%	69	27.5%	7	14.2%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_SM00060,superfamily_Fibronectin type III
OSMR	9180	genome.wustl.edu	37	5	38933143	38933143	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003999.2	+1	reviewed	p.N846T	0.006	105	0%	85	27.1%	8	0%	benign(0.03)	tolerated(0.1)	neutral(0.288)	NULL
FYB	2533	genome.wustl.edu	37	5	39118978	39118978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001465.3	-1	validated	p.K800T	1.000	290	0%	113	10.6%	7	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SH3-domain,HMMPfam_SH3_2
FYB	2533	genome.wustl.edu	37	5	39134388	39134388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001465.3	-1	validated	p.S580Y	0.030	220	0%	98	37.8%	9	0%	possibly_damaging(0.8)	deleterious(0.01)	deleterious(0.707)	NULL
C9	735	genome.wustl.edu	37	5	39316045	39316045	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001737.3	-1	reviewed	p.N234K	0.168	176	0%	55	34.5%	0	-	benign(0.022)	tolerated(0.42)	neutral(0.015)	NULL
DAB2	1601	genome.wustl.edu	37	5	39383176	39383176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001343.2	-1	validated	p.F295L	1.000	187	0%	72	29.2%	15	0%	probably_damaging(0.967)	tolerated(0.1)	deleterious(0.696)	NULL
DAB2	1601	genome.wustl.edu	37	5	39383331	39383331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001343.2	-1	validated	p.D244N	1.000	144	0%	80	35%	19	5.2%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
DAB2	1601	genome.wustl.edu	37	5	39393354	39393354	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001343.2	-1	validated	e2+2	1.000	354	0%	145	26.2%	0	-	-	-	-	-
TTC33	23548	genome.wustl.edu	37	5	40716594	40716594	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012382.2	-1	validated	p.R148*	1.000	100	0%	73	32.9%	10	10%	-	-	-	HMMSmart_SM00028,superfamily_TPR-like
CARD6	84674	genome.wustl.edu	37	5	40843253	40843253	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032587.3	+1	reviewed	e2-1	0.965	46	0%	39	17.9%	0	-	-	-	-	-
CARD6	84674	genome.wustl.edu	37	5	40843492	40843492	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032587.3	+1	reviewed	p.V174	0.009	62	0%	42	26.2%	0	-	-	-	-	NULL
CARD6	84674	genome.wustl.edu	37	5	40854253	40854253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032587.3	+1	reviewed	p.S940Y	0.992	206	0%	182	27.5%	2	50%	possibly_damaging(0.681)	deleterious(0.01)	deleterious(0.649)	NULL
C7	730	genome.wustl.edu	37	5	40959673	40959673	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000587.2	+1	reviewed	p.E538*	0.997	106	0%	43	37.2%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
HEATR7B2	133558	genome.wustl.edu	37	5	41000845	41000845	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173489.4	-1	validated	p.E1429*	1.000	158	0%	57	29.8%	0	-	-	-	-	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41019092	41019092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173489.4	-1	validated	p.D824Y	0.324	156	0%	80	30%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_ARM repeat
HEATR7B2	133558	genome.wustl.edu	37	5	41039627	41039627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173489.4	-1	validated	p.E662K	0.825	81	0%	34	26.5%	0	-	probably_damaging(0.994)	tolerated(0.43)	neutral(0.466)	superfamily_ARM repeat
GHR	2690	genome.wustl.edu	37	5	42700072	42700072	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000163.2	+1	reviewed	p.Y196D	1.000	77	0%	30	40%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	PatternScan_HEMATOPO_REC_L_F1,HMMPfam_fn3,superfamily_Fibronectin type III
GHR	2690	genome.wustl.edu	37	5	42713533	42713533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000163.2	+1	reviewed	p.F263L	0.997	405	0%	221	40.7%	0	-	possibly_damaging(0.574)	tolerated(0.08)	deleterious(0.497)	NULL
CCDC152	100129792	genome.wustl.edu	37	5	42759295	42759295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134848.1	+1	validated	p.F24L	1.000	73	0%	78	29.5%	0	-	benign(0.368)	deleterious(0)	deleterious(0.561)	NULL
ANXA2R	389289	genome.wustl.edu	37	5	43040035	43040035	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014279.2	-1	validated	p.L38	0.000	38	0%	48	31.2%	5	20%	-	-	-	NULL
C5orf34	375444	genome.wustl.edu	37	5	43490760	43490760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000306862	-1	known	p.S551L	0.006	96	0%	72	43.1%	2	50%	benign(0.046)	tolerated(0.44)	neutral(0.015)	NULL
C5orf34	375444	genome.wustl.edu	37	5	43492341	43492341	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000306862	-1	known	p.I519S	0.979	126	0%	99	39.4%	5	20%	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
PAIP1	10605	genome.wustl.edu	37	5	43529902	43529902	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006451.4	-1	reviewed	p.S444	0.995	192	0%	193	31.1%	31	61.2%	-	-	-	NULL
HCN1	348980	genome.wustl.edu	37	5	45267197	45267197	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021072.2	-1	validated	p.R593*	1.000	106	0%	126	30.2%	0	-	-	-	-	superfamily_cNMP_binding
EMB	133418	genome.wustl.edu	37	5	49699234	49699234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198449.2	-1	reviewed	p.E219K	1.000	137	0%	43	30.2%	4	0%	possibly_damaging(0.676)	tolerated(0.51)	neutral(0.249)	HMMSmart_SM00409,superfamily_Immunoglobulin
PARP8	79668	genome.wustl.edu	37	5	50118223	50118223	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024615.3	+1	validated	p.E617*	1.000	113	0%	41	36.6%	19	5.2%	-	-	-	NULL
ARL15	54622	genome.wustl.edu	37	5	53467635	53467635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019087.2	-1	validated	p.D58N	0.998	56	0%	49	34.7%	9	33.3%	possibly_damaging(0.879)	tolerated(0.12)	deleterious(0.603)	HMMPfam_Arf,superfamily_SSF52540
SNX18	112574	genome.wustl.edu	37	5	53814982	53814982	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052870.2	+1	reviewed	p.D400	0.992	49	0%	70	22.9%	15	33.3%	-	-	-	HMMPfam_BAR_3_WASP_bdg
GPX8	493869	genome.wustl.edu	37	5	54457005	54457005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008397.2	+1	validated	p.Y130D	1.000	79	0%	59	28.8%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GSHPx,superfamily_Thioredoxin-like
DHX29	54505	genome.wustl.edu	37	5	54566428	54566428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019030.2	-1	validated	p.F991L	1.000	95	0%	48	39.6%	17	41.1%	possibly_damaging(0.661)	deleterious(0.01)	deleterious(0.639)	superfamily_SSF52540
SKIV2L2	23517	genome.wustl.edu	37	5	54624638	54624638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015360.4	+1	validated	p.E172K	1.000	176	0%	104	22.1%	9	66.6%	benign(0.065)	deleterious(0.02)	neutral(0.388)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
PPAP2A	8611	genome.wustl.edu	37	5	54771275	54771275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003711.2	-1	reviewed	p.G21E	1.000	131	0%	73	21.9%	38	7.8%	benign(0.138)	deleterious(0.04)	neutral(0.360)	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
DDX4	54514	genome.wustl.edu	37	5	55086459	55086459	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024415.2	+1	validated	p.R410*	1.000	171	0%	125	30.4%	0	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX4	54514	genome.wustl.edu	37	5	55094372	55094372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024415.2	+1	validated	p.K530Q	0.993	234	0%	167	37.7%	0	-	possibly_damaging(0.736)	tolerated(0.23)	neutral(0.310)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX4	54514	genome.wustl.edu	37	5	55110860	55110860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024415.2	+1	validated	p.D616V	1.000	214	0%	194	27.3%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX4	54514	genome.wustl.edu	37	5	55112314	55112314	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024415.2	+1	validated	p.A707	0.946	144	0%	135	28.9%	0	-	-	-	-	NULL
IL31RA	133396	genome.wustl.edu	37	5	55168172	55168172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139017.4	+1	validated	p.F116S	0.000	139	0%	103	29.1%	0	-	benign(0.071)	tolerated(0.41)	neutral(0.020)	HMMSmart_FN3,superfamily_FN_III-like
IL31RA	133396	genome.wustl.edu	37	5	55212584	55212584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139017.4	+1	validated	p.F644S	0.998	112	0%	78	28.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANKRD55	79722	genome.wustl.edu	37	5	55472102	55472102	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024669.2	-1	validated	p.T63	0.579	50	0%	30	26.7%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PDE4D	5144	genome.wustl.edu	37	5	58273031	58273031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001104631.1	-1	validated	p.M565R	1.000	196	0%	88	31.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
PDE4D	5144	genome.wustl.edu	37	5	58481072	58481072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001104631.1	-1	validated	p.R234Q	1.000	119	0%	56	33.9%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PDE4D	5144	genome.wustl.edu	37	5	59284542	59284542	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000502484	-1	known	p.A15	0.995	105	0%	35	31.4%	0	-	-	-	-	NULL
DEPDC1B	55789	genome.wustl.edu	37	5	59893587	59893587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018369.2	-1	validated	p.R528Q	1.000	237	0%	101	25.7%	14	35.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF2A	3796	genome.wustl.edu	37	5	61669650	61669650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098511.1	+1	validated	p.L633I	1.000	246	0%	144	15.3%	16	37.5%	possibly_damaging(0.912)	tolerated(0.17)	neutral(0.422)	NULL
IPO11	51194	genome.wustl.edu	37	5	61766097	61766097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134779.1	+1	validated	p.N264H	1.000	243	0%	118	25.4%	2	50%	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_ARM repeat
IPO11	51194	genome.wustl.edu	37	5	61822043	61822043	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134779.1	+1	validated	p.Q697	1.000	172	0%	126	34.1%	2	50%	-	-	-	superfamily_ARM repeat
HTR1A	3350	genome.wustl.edu	37	5	63256400	63256400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000524.2	-1	validated	p.A383T	1.000	63	0%	112	37.5%	0	-	probably_damaging(0.975)	tolerated(0.1)	deleterious(0.704)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SREK1IP1	285672	genome.wustl.edu	37	5	64020233	64020233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173829.3	-1	validated	p.S149I	0.339	55	0%	35	22.9%	12	58.3%	unknown(0)	tolerated(0.13)	-	NULL
ADAMTS6	11174	genome.wustl.edu	37	5	64510483	64510483	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000261306	-1	known	p.E855*	1.000	24	0.000	9	0.444	4	75%	-	-	-	NULL
PPWD1	23398	genome.wustl.edu	37	5	64878886	64878886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015342.2	+1	validated	p.D458Y	1.000	80	0%	46	28.3%	14	71.4%	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
TRIM23	373	genome.wustl.edu	37	5	64907521	64907521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001656.3	-1	reviewed	p.A185V	1.000	141	0%	62	32.3%	10	60%	probably_damaging(0.979)	tolerated(0.67)	neutral(0.424)	HMMSmart_SM00336
C5orf44	80006	genome.wustl.edu	37	5	64920769	64920769	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_003545.1	+1	validated	NULL	0.000	69	0%	68	33.8%	8	25%	-	-	-	-
C5orf44	80006	genome.wustl.edu	37	5	64931187	64931187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093755.1	+1	validated	p.D36Y	1.000	127	0%	99	24.2%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAST4	375449	genome.wustl.edu	37	5	66460509	66460509	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000443808	+1	known	p.R891C	0.000	69	0%	109	30.3%	8	25%	-	-	-	NULL
CD180	4064	genome.wustl.edu	37	5	66479395	66479395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005582.2	-1	validated	p.D426N	1.000	186	0%	121	9.9%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
CD180	4064	genome.wustl.edu	37	5	66481705	66481705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005582.2	-1	validated	p.M77I	0.000	177	0%	77	29.9%	3	33.3%	benign(0)	tolerated(0.69)	neutral(0.002)	HMMSmart_SM00369,superfamily_L domain-like
SLC30A5	64924	genome.wustl.edu	37	5	68425300	68425300	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000511158	+1	known	p.E37G	1.000	89	0%	112	31.2%	67	44.7%	-	-	-	NULL
CDK7	1022	genome.wustl.edu	37	5	68531245	68531245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001799.3	+1	validated	p.D31Y	1.000	291	0.3%	325	14.8%	35	8.5%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
RAD17	5884	genome.wustl.edu	37	5	68677857	68677857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133339.1	+1	reviewed	p.D172Y	1.000	75	1.3%	71	22.5%	9	44.4%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_Rad17,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD17	5884	genome.wustl.edu	37	5	68684956	68684956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133339.1	+1	reviewed	p.Q341H	1.000	233	0%	142	19%	7	42.8%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Rad17,superfamily_P-loop containing nucleoside triphosphate hydrolases
BDP1	55814	genome.wustl.edu	37	5	70800527	70800527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018429.2	+1	reviewed	p.S774Y	0.001	174	0%	76	28.9%	1	0%	benign(0.318)	deleterious(0.04)	neutral(0.449)	NULL
BDP1	55814	genome.wustl.edu	37	5	70806104	70806104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018429.2	+1	reviewed	p.T1062M	0.000	95	0%	64	29.7%	1	100%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
BDP1	55814	genome.wustl.edu	37	5	70807009	70807009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000437938	+1	known	p.L1364V	0.001	108	0%	61	32.8%	0	-	-	-	-	NULL
MCCC2	64087	genome.wustl.edu	37	5	70944926	70944926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022132.4	+1	reviewed	p.F407V	1.000	138	0%	81	28.4%	40	72.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
CARTPT	9607	genome.wustl.edu	37	5	71015270	71015270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004291.3	+1	reviewed	p.E50D	1.000	40	0%	68	27.9%	0	-	possibly_damaging(0.892)	tolerated(0.09)	deleterious(0.648)	HMMPfam_CART
MAP1B	4131	genome.wustl.edu	37	5	71491717	71491717	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005909.3	+1	validated	p.A845	0.018	20	0%	16	25%	8	50%	-	-	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71494018	71494018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005909.3	+1	validated	p.E1612D	0.996	102	0%	64	28.1%	8	25%	unknown(0)	deleterious(0.03)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71494127	71494127	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005909.3	+1	validated	p.F1649V	1.000	94	0%	61	24.6%	7	14.2%	unknown(0)	tolerated(0.11)	-	NULL
ZNF366	167465	genome.wustl.edu	37	5	71739648	71739648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152625.1	-1	provisional	p.D724Y	1.000	99	0%	67	29.9%	0	-	possibly_damaging(0.821)	deleterious(0)	deleterious(0.755)	NULL
TNPO1	3842	genome.wustl.edu	37	5	72201211	72201211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002270.3	+1	reviewed	p.R891C	1.000	300	0%	105	30.5%	25	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
BTF3	689	genome.wustl.edu	37	5	72798390	72798390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037637.1	+1	reviewed	p.K93N	1.000	125	0%	209	15.3%	724	17.5%	possibly_damaging(0.949)	deleterious(0.04)	deleterious(0.742)	HMMPfam_NAC
ANKRA2	57763	genome.wustl.edu	37	5	72858633	72858633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023039.3	-1	provisional	p.T25I	0.455	105	0%	121	36.4%	10	30%	benign(0.032)	tolerated(0.06)	neutral(0.324)	NULL
HEXB	3074	genome.wustl.edu	37	5	74001048	74001048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000521.3	+1	reviewed	p.A225V	1.000	227	0%	257	35.4%	76	34.2%	possibly_damaging(0.458)	tolerated(0.22)	neutral(0.192)	HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases
ANKRD31	256006	genome.wustl.edu	37	5	74442421	74442421	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000274361	-1	known	p.E939*	0.097	62	0%	23	34.8%	0	-	-	-	-	superfamily_ANK
ANKRD31	256006	genome.wustl.edu	37	5	74518093	74518093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000274361	-1	known	p.S90N	0.001	178	0%	109	35.8%	0	-	benign(0.001)	-	-	NULL
POC5	134359	genome.wustl.edu	37	5	74990490	74990490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099271.1	-1	validated	p.R227I	1.000	165	0%	172	32.6%	6	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SV2C	22987	genome.wustl.edu	37	5	75597229	75597229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014979.1	+1	provisional	p.S620L	1.000	262	0%	138	39.9%	1	100%	probably_damaging(0.984)	tolerated(0.05)	deleterious(0.776)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75886364	75886364	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006633.2	+1	validated	p.E258*	1.000	80	0%	52	44.2%	5	0%	-	-	-	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75902078	75902078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006633.2	+1	validated	p.I436T	1.000	131	0%	59	44.1%	9	0%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
IQGAP2	10788	genome.wustl.edu	37	5	75993845	75993845	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006633.2	+1	validated	p.R1414*	1.000	82	0%	43	20.9%	32	0%	-	-	-	HMMPfam_RasGAP_C
F2R	2149	genome.wustl.edu	37	5	76028286	76028286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001992.3	+1	reviewed	p.P79H	0.000	167	0%	101	33.7%	10	0%	benign(0.123)	tolerated(0.08)	neutral(0.310)	superfamily_SSF81321
AGGF1	55109	genome.wustl.edu	37	5	76355440	76355440	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018046.3	+1	validated	e12-1	1.000	85	0%	57	14%	0	-	-	-	-	-
PDE8B	8622	genome.wustl.edu	37	5	76717775	76717775	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003719.2	+1	validated	p.E794*	1.000	176	0%	68	29.4%	5	20%	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE8B	8622	genome.wustl.edu	37	5	76721677	76721677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003719.2	+1	validated	p.S835Y	1.000	164	0%	52	26.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
AP3B1	8546	genome.wustl.edu	37	5	77396843	77396843	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003664.3	-1	reviewed	p.E802*	1.000	147	0%	199	29.6%	24	12.5%	-	-	-	NULL
AP3B1	8546	genome.wustl.edu	37	5	77512007	77512007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003664.3	-1	reviewed	p.D220Y	1.000	196	0%	178	33.1%	7	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
DMGDH	29958	genome.wustl.edu	37	5	78326805	78326805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013391.2	-1	reviewed	p.T512A	1.000	84	0%	68	30.9%	0	-	possibly_damaging(0.941)	tolerated(0.44)	neutral(0.399)	superfamily_Aminomethyltransferase folate-binding domain
BHMT2	23743	genome.wustl.edu	37	5	78376631	78376631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017614.4	+1	reviewed	p.R127I	0.982	157	0%	114	61.4%	0	-	possibly_damaging(0.806)	deleterious(0.02)	deleterious(0.686)	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
BHMT	635	genome.wustl.edu	37	5	78415199	78415199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001713.2	+1	reviewed	p.S95Y	1.000	72	0%	114	22.8%	0	-	benign(0.196)	deleterious(0.02)	neutral(0.402)	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
JMY	133746	genome.wustl.edu	37	5	78608235	78608235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152405.4	+1	validated	p.K660E	0.321	98	0%	38	47.4%	6	66.6%	possibly_damaging(0.601)	tolerated(0.18)	neutral(0.264)	NULL
HOMER1	9456	genome.wustl.edu	37	5	78697756	78697756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004272.3	-1	validated	p.A217V	1.000	145	0%	73	17.8%	6	16.6%	probably_damaging(0.954)	tolerated(0.31)	neutral(0.425)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79030238	79030238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153610.3	+1	validated	p.E1884*	0.137	83	0%	32	25%	1	100%	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79031882	79031882	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153610.3	+1	validated	p.E2432*	0.974	61	0%	20	20%	1	0%	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79032884	79032884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153610.3	+1	validated	p.E2766*	0.000	108	0%	69	31.9%	1	0%	-	-	-	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033766	79033766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153610.3	+1	validated	p.D3060Y	1.000	108	0%	55	23.6%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79039696	79039696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153610.3	+1	validated	p.R3562M	1.000	199	0%	60	21.7%	1	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79084910	79084910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153610.3	+1	validated	p.A3891V	1.000	88	0%	131	32.1%	2	50%	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	superfamily_FN_III-like
CMYA5	202333	genome.wustl.edu	37	5	79095425	79095425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153610.3	+1	validated	p.V4066I	0.945	87	0%	32	43.8%	1	0%	possibly_damaging(0.602)	deleterious(0.03)	deleterious(0.573)	NULL
THBS4	7060	genome.wustl.edu	37	5	79335971	79335971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003248.4	+1	reviewed	p.A54T	0.703	105	0%	131	32.1%	0	-	benign(0)	tolerated(0.9)	-	HMMSmart_TSPN
THBS4	7060	genome.wustl.edu	37	5	79351711	79351711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003248.4	+1	reviewed	p.S132R	1.000	100	0%	110	36.4%	4	0%	benign(0.059)	tolerated(0.81)	neutral(0.005)	HMMSmart_TSPN
SPZ1	84654	genome.wustl.edu	37	5	79616365	79616365	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032567.3	+1	validated	p.E111*	0.025	64	0%	63	25.4%	0	-	-	-	-	NULL
FAM151B	167555	genome.wustl.edu	37	5	79817846	79817846	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205548.1	+1	predicted	p.E187A	0.905	105	0%	76	38.2%	1	100%	benign(0.265)	tolerated(0.61)	neutral(0.032)	HMMPfam_DUF2181
ANKRD34B	340120	genome.wustl.edu	37	5	79854784	79854784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004441.2	-1	validated	p.A352D	0.252	76	0%	41	39%	0	-	possibly_damaging(0.517)	tolerated(0.08)	deleterious(0.474)	NULL
DHFR	1719	genome.wustl.edu	37	5	79945224	79945224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000791.3	-1	reviewed	p.L76I	1.000	99	0%	144	33.3%	11	81.8%	possibly_damaging(0.436)	tolerated(0.08)	neutral(0.442)	HMMPfam_DHFR_1,superfamily_Dihydrofolate reductases
MSH3	4437	genome.wustl.edu	37	5	79952270	79952270	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002439.3	+1	reviewed	p.N93T	0.065	186	0%	371	27%	1	0%	benign(0.013)	deleterious(0.02)	neutral(0.384)	NULL
MSH3	4437	genome.wustl.edu	37	5	79961018	79961018	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002439.3	+1	reviewed	p.E139*	1.000	77	0%	111	27.9%	0	-	-	-	-	NULL
MSH3	4437	genome.wustl.edu	37	5	80063902	80063902	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002439.3	+1	reviewed	p.E683*	0.998	161	0%	60	21.7%	6	50%	-	-	-	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III
MSH3	4437	genome.wustl.edu	37	5	80150030	80150030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002439.3	+1	reviewed	p.K965N	0.518	114	0%	64	29.7%	12	16.6%	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
RASGRF2	5924	genome.wustl.edu	37	5	80388664	80388664	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006909.1	+1	validated	p.K479Q	1.000	115	0%	106	31.1%	1	0%	possibly_damaging(0.61)	tolerated(0.07)	deleterious(0.530)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RASGRF2	5924	genome.wustl.edu	37	5	80388707	80388707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006909.1	+1	validated	p.R493I	1.000	112	0%	107	29.9%	0	-	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RASGRF2	5924	genome.wustl.edu	37	5	80408453	80408453	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006909.1	+1	validated	p.D621	0.334	101	0%	44	31.8%	0	-	-	-	-	superfamily_Ras GEF
LOC100129411	100129411	genome.wustl.edu	37	5	80422930	80422930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001715988.1	-1	model	p.P110L	0.976	111	0%	45	13.3%	1	0%	-	-	-	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80497155	80497155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006909.1	+1	validated	p.E934K	1.000	81	0%	83	36.1%	1	100%	possibly_damaging(0.858)	deleterious(0.02)	deleterious(0.714)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
CKMT2	1160	genome.wustl.edu	37	5	80555016	80555016	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099735.1	+1	reviewed	p.S319	0.953	126	0%	130	25.4%	13	46.1%	-	-	-	HMMPfam_ATP-gua_Ptrans,PatternScan_GUANIDO_KINASE,superfamily_SSF55931
ACOT12	134526	genome.wustl.edu	37	5	80639994	80639994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130767.2	-1	validated	p.R322Q	1.000	78	0%	93	26.9%	0	-	possibly_damaging(0.687)	tolerated(0.36)	neutral(0.266)	NULL
ACOT12	134526	genome.wustl.edu	37	5	80655819	80655819	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130767.2	-1	validated	p.D133	0.549	280	0%	119	33.6%	1	100%	-	-	-	superfamily_Thioesterase/thiol ester dehydrase-isomerase
VCAN	1462	genome.wustl.edu	37	5	82815255	82815255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.R377I	0.948	85	0%	75	28%	1	0%	possibly_damaging(0.736)	deleterious(0.02)	deleterious(0.652)	NULL
VCAN	1462	genome.wustl.edu	37	5	82816418	82816418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.D765Y	0.008	114	0%	66	30.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
VCAN	1462	genome.wustl.edu	37	5	82833871	82833871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.E1683D	0.000	65	0%	35	22.9%	2	0%	benign(0)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82835131	82835131	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.V2103	0.003	88	0%	47	8.5%	7	0%	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82835990	82835990	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.E2390*	0.889	91	0%	30	40%	5	0%	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82836059	82836059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.E2413K	0.000	105	0%	33	24.2%	3	0%	benign(0.179)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82836576	82836576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.P2585H	0.230	48	0%	30	26.7%	12	8.3%	probably_damaging(1)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82837291	82837291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004385.4	+1	reviewed	p.Q2823H	0.000	110	0%	42	16.7%	13	0%	benign(0)	-	-	NULL
EDIL3	10085	genome.wustl.edu	37	5	83356293	83356293	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005711.3	-1	reviewed	p.E321	1.000	123	0%	42	28.6%	2	0%	-	-	-	HMMSmart_SM00231,superfamily_Galactose-binding domain-like
EDIL3	10085	genome.wustl.edu	37	5	83360563	83360563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005711.3	-1	reviewed	p.R303I	1.000	158	0%	87	37.9%	1	0%	possibly_damaging(0.671)	tolerated(0.25)	neutral(0.275)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like
RASA1	5921	genome.wustl.edu	37	5	86649005	86649005	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002890.1	+1	reviewed	p.E429*	1.000	120	0%	40	20%	6	0%	-	-	-	HMMSmart_SM00252,superfamily_SH2 domain
GPR98	84059	genome.wustl.edu	37	5	89977154	89977154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032119.3	+1	reviewed	p.Q1849H	0.987	105	0%	64	34.4%	0	-	benign(0.003)	tolerated(0.19)	neutral(0.050)	NULL
GPR98	84059	genome.wustl.edu	37	5	90072290	90072290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032119.3	+1	reviewed	p.R4142W	0.052	157	0%	59	28.8%	0	-	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	NULL
ARRDC3	57561	genome.wustl.edu	37	5	90678644	90678644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020801.2	-1	validated	p.I89S	1.000	119	0%	217	24.9%	27	48.1%	possibly_damaging(0.61)	deleterious(0.03)	deleterious(0.576)	HMMPfam_Arrestin_N,superfamily_Ig_E-set
FAM172A	83989	genome.wustl.edu	37	5	93217271	93217271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032042.5	-1	validated	p.D231Y	1.000	363	0%	143	27.3%	4	50%	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	HMMPfam_Arb2
KIAA0825	285600	genome.wustl.edu	37	5	93809122	93809122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145678.1	-1	validated	p.L444I	1.000	199	0%	163	31.9%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93872811	93872811	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145678.1	-1	validated	p.Y7	1.000	74	0%	83	36.1%	0	-	-	-	-	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94001657	94001657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032290.3	+1	validated	p.R487I	0.788	265	0%	146	13%	4	25%	benign(0.042)	deleterious(0.01)	neutral(0.408)	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94024308	94024308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032290.3	+1	validated	p.S740F	1.000	172	0%	158	42.4%	4	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94025259	94025259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032290.3	+1	validated	p.E789D	1.000	88	0%	68	33.8%	2	0%	benign(0.296)	deleterious(0)	deleterious(0.536)	superfamily_ANK
TTC37	9652	genome.wustl.edu	37	5	94865914	94865914	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014639.2	-1	provisional	p.G257	0.610	183	0%	145	37.9%	13	53.8%	-	-	-	superfamily_SSF48452
TTC37	9652	genome.wustl.edu	37	5	94879014	94879014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014639.2	-1	provisional	p.E36D	1.000	194	0%	139	30.2%	10	30%	benign(0.005)	tolerated(0.54)	neutral(0.007)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
ARSK	153642	genome.wustl.edu	37	5	94918806	94918806	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198150.2	+1	validated	p.Y201*	0.983	111	0%	64	18.8%	2	50%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ELL2	22936	genome.wustl.edu	37	5	95226947	95226947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012081.5	-1	validated	p.R541C	1.000	212	0%	134	11.9%	13	0%	unknown(0)	deleterious(0)	-	HMMPfam_Occludin_ELL
PCSK1	5122	genome.wustl.edu	37	5	95728874	95728874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000439.4	-1	reviewed	p.E698G	0.188	210	0%	115	34.8%	0	-	benign(0.059)	deleterious(0.03)	neutral(0.368)	NULL
ERAP1	51752	genome.wustl.edu	37	5	96112228	96112228	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016442.3	-1	validated	p.E900*	1.000	241	0%	67	32.8%	31	41.9%	-	-	-	NULL
ERAP1	51752	genome.wustl.edu	37	5	96132899	96132899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016442.3	-1	validated	p.K259N	1.000	95	0%	86	34.9%	22	31.8%	possibly_damaging(0.757)	tolerated(0.12)	deleterious(0.540)	HMMPfam_Peptidase_M1
ERAP2	64167	genome.wustl.edu	37	5	96251473	96251473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000512869	+1	known	p.G68S	1.000	245	0%	199	30.2%	21	0%	-	-	-	NULL
ERAP2	64167	genome.wustl.edu	37	5	96253185	96253185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130140.1	+1	validated	p.S920Y	0.998	143	0.7%	139	35.3%	23	73.9%	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	NULL
LNPEP	4012	genome.wustl.edu	37	5	96315631	96315631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005575.2	+1	reviewed	p.S270Y	0.150	56	0%	26	34.6%	5	40%	possibly_damaging(0.801)	deleterious(0.02)	deleterious(0.684)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
LNPEP	4012	genome.wustl.edu	37	5	96360311	96360311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005575.2	+1	reviewed	p.S883Y	0.001	55	0%	35	40%	6	66.6%	benign(0.005)	tolerated(0.48)	neutral(0.011)	NULL
CHD1	1105	genome.wustl.edu	37	5	98209302	98209302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001270.2	-1	reviewed	p.R1189Q	1.000	203	0%	204	32.8%	20	35%	benign(0.137)	tolerated(0.18)	neutral(0.068)	NULL
CHD1	1105	genome.wustl.edu	37	5	98238607	98238607	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001270.2	-1	reviewed	p.K145T	1.000	135	0%	66	24.2%	2	50%	possibly_damaging(0.774)	tolerated(0.28)	neutral(0.320)	NULL
ST8SIA4	7903	genome.wustl.edu	37	5	100147762	100147762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005668.4	-1	reviewed	p.R290K	1.000	108	0%	58	22.4%	2	0%	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	HMMPfam_Glyco_transf_29
ST8SIA4	7903	genome.wustl.edu	37	5	100191996	100191996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005668.4	-1	reviewed	p.R203Q	1.000	145	0%	130	23.8%	0	-	benign(0.022)	tolerated(0.59)	neutral(0.005)	HMMPfam_Glyco_transf_29
ST8SIA4	7903	genome.wustl.edu	37	5	100231433	100231433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005668.4	-1	reviewed	p.R57Q	1.000	147	0%	149	29.5%	5	0%	benign(0.022)	tolerated(0.2)	neutral(0.050)	NULL
SLCO4C1	353189	genome.wustl.edu	37	5	101592977	101592977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_180991.4	-1	validated	p.I437M	0.990	111	0%	62	24.2%	0	-	possibly_damaging(0.822)	deleterious(0.04)	deleterious(0.660)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO6A1	133482	genome.wustl.edu	37	5	101724427	101724427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173488.3	-1	validated	p.N661T	0.040	154	0%	66	24.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_OATP,superfamily_MFS general substrate transporter
PAM	5066	genome.wustl.edu	37	5	102355517	102355517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000919.3	+1	reviewed	p.K819E	1.000	236	0%	95	40%	539	46.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GIN1	54826	genome.wustl.edu	37	5	102423724	102423724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017676.2	-1	validated	p.R483C	0.106	106	0%	48	20.8%	8	12.5%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
GIN1	54826	genome.wustl.edu	37	5	102432489	102432489	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017676.2	-1	validated	p.I350	0.040	195	0%	76	25%	3	0%	-	-	-	NULL
PPIP5K2	23262	genome.wustl.edu	37	5	102519017	102519017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015216.2	+1	provisional	p.R1002Q	1.000	92	0%	63	31.7%	17	0%	benign(0.057)	tolerated(0.53)	neutral(0.011)	NULL
FER	2241	genome.wustl.edu	37	5	108207167	108207167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005246.2	+1	reviewed	p.P256H	1.000	124	0%	34	11.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PJA2	9867	genome.wustl.edu	37	5	108714469	108714469	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014819.4	-1	validated	p.K240T	0.999	175	0%	133	36.8%	29	58.6%	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109120458	109120458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002372.2	+1	reviewed	p.L531I	1.000	109	0%	37	40.5%	5	20%	possibly_damaging(0.851)	tolerated(0.07)	deleterious(0.646)	HMMPfam_Alpha-mann_mid,superfamily_SSF88688
MAN2A1	4124	genome.wustl.edu	37	5	109120509	109120509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002372.2	+1	reviewed	p.L548I	1.000	146	0%	52	26.9%	9	88.8%	benign(0.045)	tolerated(0.41)	neutral(0.017)	HMMPfam_Alpha-mann_mid,superfamily_SSF88688
MAN2A1	4124	genome.wustl.edu	37	5	109190985	109190985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002372.2	+1	reviewed	p.S1041A	0.854	185	0%	66	28.8%	12	33.3%	benign(0.023)	tolerated(0.15)	neutral(0.242)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
SLC25A46	91137	genome.wustl.edu	37	5	110096916	110096916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138773.1	+1	provisional	p.R231*	1.000	148	0%	59	23.7%	15	66.6%	-	-	-	superfamily_Mitochondrial carrier
LOC100286926	100286926	genome.wustl.edu	37	5	110427985	110427985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342562.1	-1	model	p.K84Q	0.004	19	0%	36	38.9%	0	-	-	-	-	NULL
EPB41L4A-AS1	114915	genome.wustl.edu	37	5	111496599	111496599	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_015370.2	+1	validated	NULL	0.000	127	0%	181	27.1%	23	34.7%	-	-	-	-
EPB41L4A-AS1	114915	genome.wustl.edu	37	5	111496799	111496799	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_015370.2	+1	validated	NULL	0.003	54	0%	72	19.4%	61	40.9%	-	-	-	-
APC	324	genome.wustl.edu	37	5	112151261	112151261	+	Nonsense_Mutation	SNP	C	C	T	rs137854568		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000038.4	+1	reviewed	p.R302*	1.000	81	0%	31	25.8%	0	-	-	-	-	superfamily_ARM repeat
APC	324	genome.wustl.edu	37	5	112173476	112173476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000038.4	+1	reviewed	p.L729F	1.000	83	0%	73	17.8%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
APC	324	genome.wustl.edu	37	5	112176192	112176192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000038.4	+1	reviewed	p.P1634L	1.000	64	0%	40	45%	6	66.6%	possibly_damaging(0.444)	deleterious(0.04)	deleterious(0.494)	NULL
MCC	4163	genome.wustl.edu	37	5	112379265	112379265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085377.1	-1	reviewed	p.E906D	0.964	40	0%	52	25%	4	50%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
YTHDC2	64848	genome.wustl.edu	37	5	112868689	112868689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022828.3	+1	validated	p.E263D	1.000	121	0%	76	22.4%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_DEXDc,superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112889717	112889717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022828.3	+1	validated	p.E711*	1.000	223	0%	164	29.9%	4	25%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
YTHDC2	64848	genome.wustl.edu	37	5	112927877	112927877	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022828.3	+1	validated	e28+2	1.000	153	0%	55	34.5%	4	25%	-	-	-	-
FEM1C	56929	genome.wustl.edu	37	5	114860958	114860958	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020177.2	-1	validated	p.E301*	1.000	135	0%	75	29.3%	24	58.3%	-	-	-	superfamily_ANK
TICAM2	353376	genome.wustl.edu	37	5	114916300	114916300	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021649.5	-1	validated	p.Q218	0.179	111	0%	108	29.6%	2	0%	-	-	-	NULL
TICAM2	353376	genome.wustl.edu	37	5	114916621	114916621	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021649.5	-1	validated	p.I111	1.000	171	0%	138	34.8%	5	0%	-	-	-	superfamily_TIR
AQPEP	206338	genome.wustl.edu	37	5	115320309	115320309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173800.4	+1	validated	p.V294A	0.611	109	0%	61	27.9%	1	100%	benign(0.018)	tolerated(0.29)	neutral(0.030)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
AQPEP	206338	genome.wustl.edu	37	5	115335464	115335464	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173800.4	+1	validated	p.E460	0.022	74	0%	44	38.6%	0	-	-	-	-	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
COMMD10	51397	genome.wustl.edu	37	5	115423219	115423219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016144.2	+1	provisional	p.N23H	0.997	210	0%	281	34.5%	20	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HCaRG
DMXL1	1657	genome.wustl.edu	37	5	118437692	118437692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005509.4	+1	validated	p.K92N	1.000	113	0%	78	32.1%	2	50%	benign(0)	tolerated(0.3)	neutral(0.029)	superfamily_WD40 repeat-like
DMXL1	1657	genome.wustl.edu	37	5	118484613	118484613	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005509.4	+1	validated	p.E1031*	1.000	101	0%	50	30%	12	41.6%	-	-	-	NULL
DMXL1	1657	genome.wustl.edu	37	5	118533515	118533515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005509.4	+1	validated	p.L2537I	1.000	182	0%	97	30.9%	11	18.1%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_WD40 repeat-like
PRR16	51334	genome.wustl.edu	37	5	120021866	120021866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016644.1	+1	provisional	p.P103H	0.999	135	0%	72	30.6%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FTMT	94033	genome.wustl.edu	37	5	121188162	121188162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177478.1	+1	validated	p.K168N	0.991	45	0%	53	41.5%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
SRFBP1	153443	genome.wustl.edu	37	5	121309919	121309919	+	Missense_Mutation	SNP	G	G	T	rs182811437	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152546.2	+1	validated	p.R22I	0.988	110	0%	56	33.9%	11	36.3%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
SRFBP1	153443	genome.wustl.edu	37	5	121356127	121356127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152546.2	+1	validated	p.T233A	0.000	74	0%	48	27.1%	6	50%	benign(0.009)	deleterious(0.04)	neutral(0.349)	NULL
SNCAIP	9627	genome.wustl.edu	37	5	121759422	121759422	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005460.2	+1	reviewed	p.Q330	0.977	97	0%	27	33.3%	4	25%	-	-	-	superfamily_ANK
SNCAIP	9627	genome.wustl.edu	37	5	121776384	121776384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005460.2	+1	reviewed	p.V453I	1.000	172	0%	105	29.5%	4	0%	benign(0.068)	tolerated(0.32)	neutral(0.029)	HMMPfam_Ank,superfamily_ANK
SNCAIP	9627	genome.wustl.edu	37	5	121786733	121786733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005460.2	+1	reviewed	p.R731C	1.000	99	0%	39	48.7%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP120	153241	genome.wustl.edu	37	5	122727031	122727031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153223.3	-1	reviewed	p.I271V	1.000	91	0%	39	17.9%	6	66.6%	benign(0.016)	tolerated(0.24)	neutral(0.038)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123984584	123984584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020747.2	-1	validated	p.N498S	1.000	182	0%	214	31.8%	7	57.1%	benign(0.053)	tolerated(0.25)	neutral(0.041)	NULL
GRAMD3	65983	genome.wustl.edu	37	5	125816389	125816389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023927.2	+1	validated	p.S242Y	0.991	166	0%	68	30.9%	17	29.4%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
MEGF10	84466	genome.wustl.edu	37	5	126732327	126732327	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032446.2	+1	validated	p.G172	0.982	21	0%	35	31.4%	0	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
MEGF10	84466	genome.wustl.edu	37	5	126781265	126781265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032446.2	+1	validated	p.L870F	0.970	238	0%	95	18.9%	0	-	possibly_damaging(0.439)	deleterious(0.03)	deleterious(0.507)	NULL
MEGF10	84466	genome.wustl.edu	37	5	126791225	126791225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032446.2	+1	validated	p.S1053L	1.000	98	0%	46	10.9%	0	-	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127474291	127474291	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001046.2	+1	validated	p.E471*	1.000	356	0%	183	30.1%	0	-	-	-	-	HMMPfam_AA_permease
SLC12A2	6558	genome.wustl.edu	37	5	127474324	127474324	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001046.2	+1	validated	p.R482*	1.000	386	0%	202	31.2%	0	-	-	-	-	HMMPfam_AA_permease
SLC12A2	6558	genome.wustl.edu	37	5	127486939	127486939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001046.2	+1	validated	p.R705H	1.000	252	0%	105	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
SLC12A2	6558	genome.wustl.edu	37	5	127510302	127510302	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001046.2	+1	validated	p.K958I	1.000	108	0%	26	23.1%	3	66.6%	benign(0.02)	tolerated(0.09)	neutral(0.297)	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127520113	127520113	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001046.2	+1	validated	p.E1119*	1.000	125	0.8%	65	26.2%	1	100%	-	-	-	NULL
FBN2	2201	genome.wustl.edu	37	5	127597539	127597539	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001999.3	-1	reviewed	p.V2751	0.000	171	0%	75	28%	94	39.3%	-	-	-	NULL
FBN2	2201	genome.wustl.edu	37	5	127668615	127668615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001999.3	-1	reviewed	p.I1404S	1.000	205	0%	121	32.2%	18	61.1%	possibly_damaging(0.437)	deleterious(0.02)	deleterious(0.525)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127854988	127854988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001999.3	-1	reviewed	p.F202L	1.000	84	0%	46	32.6%	19	52.6%	benign(0.231)	tolerated(0.08)	neutral(0.323)	HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2
ADAMTS19	171019	genome.wustl.edu	37	5	128864279	128864279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133638.3	+1	reviewed	p.E407*	1.000	110	0%	60	25%	6	0%	-	-	-	"superfamily_Metalloproteases (""zincins"") catalytic domain"
CHSY3	337876	genome.wustl.edu	37	5	129520187	129520187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175856.4	+1	validated	p.S451Y	1.000	51	0%	28	53.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_CHGN
CHSY3	337876	genome.wustl.edu	37	5	129520795	129520795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175856.4	+1	validated	p.L654V	1.000	71	0%	63	39.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CHGN,superfamily_SSF53448
RAPGEF6	51735	genome.wustl.edu	37	5	130766971	130766971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016340.5	-1	validated	p.S1349Y	1.000	127	0%	66	22.7%	4	25%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
RAPGEF6	51735	genome.wustl.edu	37	5	130778223	130778223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016340.5	-1	validated	p.K1143N	1.000	205	0%	93	24.7%	2	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_Ras GEF
RAPGEF6	51735	genome.wustl.edu	37	5	130883819	130883819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016340.5	-1	validated	p.R139Q	0.999	296	0%	143	36.4%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
FNIP1	96459	genome.wustl.edu	37	5	131008125	131008125	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513722	-1	known	p.E465*	1.000	113	0%	48	22.9%	8	62.5%	benign(0.071)	deleterious(0.04)	neutral(0.354)	NULL
ACSL6	23305	genome.wustl.edu	37	5	131329904	131329904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009185.1	-1	validated	p.E30D	1.000	34	0%	32	34.4%	0	-	benign(0.17)	tolerated(0.11)	neutral(0.287)	NULL
P4HA2	8974	genome.wustl.edu	37	5	131534583	131534583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142599.1	-1	reviewed	p.D432N	1.000	111	0%	83	31.3%	61	8.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
P4HA2	8974	genome.wustl.edu	37	5	131553488	131553488	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142599.1	-1	reviewed	p.E46*	1.000	116	0%	124	38.7%	23	4.3%	-	-	-	HMMPfam_P4Ha_N
SLC22A5	6584	genome.wustl.edu	37	5	131728297	131728297	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003060.3	+1	reviewed	p.F480	0.017	90	0%	72	22.2%	67	50.7%	-	-	-	superfamily_MFS general substrate transporter
RAD50	10111	genome.wustl.edu	37	5	131939092	131939092	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005732.3	+1	reviewed	p.E770*	1.000	116	0%	83	28.9%	13	7.6%	-	-	-	HMMPfam_SMC_N,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF3A	11127	genome.wustl.edu	37	5	132037863	132037863	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007054.5	-1	validated	p.G573	0.981	146	0%	83	21.7%	12	33.3%	-	-	-	NULL
KIF3A	11127	genome.wustl.edu	37	5	132039171	132039171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007054.5	-1	validated	p.D457Y	1.000	315	0%	185	28.1%	6	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CCNI2	645121	genome.wustl.edu	37	5	132084119	132084119	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039780.2	+1	provisional	p.T170	0.001	73	0%	159	29.6%	1	0%	-	-	-	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
SEPT8	23176	genome.wustl.edu	37	5	132100080	132100080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098811.1	-1	validated	p.M61I	1.000	139	0%	176	29%	52	44.2%	benign(0.006)	tolerated(1)	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
GDF9	2661	genome.wustl.edu	37	5	132199972	132199972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005260.3	-1	reviewed	p.A85D	0.980	160	0.6%	182	34.6%	0	-	benign(0.052)	tolerated(0.23)	neutral(0.045)	NULL
AFF4	27125	genome.wustl.edu	37	5	132238134	132238134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014423.3	-1	validated	p.S378F	1.000	125	0%	93	24.7%	6	33.3%	benign(0.15)	deleterious(0.01)	neutral(0.419)	HMMPfam_AF-4
HSPA4	3308	genome.wustl.edu	37	5	132409744	132409744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002154.3	+1	validated	p.N197Y	1.000	109	0%	77	39%	84	57.1%	benign(0.098)	tolerated(0.17)	neutral(0.067)	HMMPfam_HSP70,superfamily_SSF53067
HSPA4	3308	genome.wustl.edu	37	5	132412504	132412504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002154.3	+1	validated	p.K274N	1.000	187	0%	126	24.6%	96	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF53067
FSTL4	23105	genome.wustl.edu	37	5	132560972	132560972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000360575	-1	known	p.M1T	0.988	115	0%	71	32.4%	8	25%	-	-	-	NULL
PPP2CA	5515	genome.wustl.edu	37	5	133537696	133537696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002715.2	-1	reviewed	p.R110H	1.000	178	0.6%	103	27.2%	188	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
SEC24A	10802	genome.wustl.edu	37	5	134015381	134015381	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021982.1	+1	validated	p.R448	1.000	188	0%	119	33.6%	9	33.3%	-	-	-	HMMPfam_zf-Sec23_Sec24,superfamily_beta-sandwich domain of Sec23/24
DDX46	9879	genome.wustl.edu	37	5	134113361	134113361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014829.2	+1	reviewed	p.E237D	0.998	152	0%	140	24.3%	16	18.7%	benign(0.012)	tolerated(0.42)	neutral(0.015)	NULL
CATSPER3	347732	genome.wustl.edu	37	5	134346174	134346174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178019.2	+1	validated	p.D350N	0.100	144	0%	162	29%	2	50%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
H2AFY	9555	genome.wustl.edu	37	5	134681683	134681683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138610.2	-1	reviewed	p.K251N	1.000	178	0%	126	28.6%	412	39.8%	possibly_damaging(0.634)	deleterious(0.02)	deleterious(0.605)	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
FBXL21	26223	genome.wustl.edu	37	5	135277261	135277261	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012159.4	+1	validated	p.V402	0.995	111	0%	84	35.7%	0	-	-	-	-	NULL
LECT2	3950	genome.wustl.edu	37	5	135283138	135283138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002302.2	-1	reviewed	p.P113H	0.601	209	0%	144	23.6%	0	-	benign(0.358)	tolerated(0.05)	neutral(0.459)	HMMPfam_Peptidase_M23
TRPC7	57113	genome.wustl.edu	37	5	135549254	135549254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513104	-1	known	p.R820C	1.000	137	0%	99	38.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPC7	57113	genome.wustl.edu	37	5	135561823	135561823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513104	-1	known	p.L721F	1.000	147	0%	89	32.6%	0	-	benign(0.004)	tolerated(0.42)	neutral(0.014)	NULL
TRPC7	57113	genome.wustl.edu	37	5	135567199	135567199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513104	-1	known	p.F628S	1.000	152	0%	65	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans
TRPC7	57113	genome.wustl.edu	37	5	135692303	135692303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513104	-1	known	p.E258A	1.000	38	0%	65	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRP_2
TRPC7	57113	genome.wustl.edu	37	5	135692649	135692649	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513104	-1	known	p.E143*	1.000	60	0%	89	24.7%	0	-	-	-	-	superfamily_ANK
MYOT	9499	genome.wustl.edu	37	5	137206353	137206353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006790.2	+1	reviewed	p.E5K	1.000	54	0%	38	36.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PKD2L2	27039	genome.wustl.edu	37	5	137261577	137261577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014386.2	+1	validated	p.D544N	0.890	274	0%	155	31%	0	-	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	NULL
FAM13B	51306	genome.wustl.edu	37	5	137323294	137323294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016603.2	-1	validated	p.R301I	1.000	156	0%	94	22.3%	10	20%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137761113	137761113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016604.3	+1	validated	p.S1418L	1.000	122	0%	59	45.8%	41	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Clavaminate synthase-like
HSPA9	3313	genome.wustl.edu	37	5	137903356	137903356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004134.6	-1	reviewed	p.F197L	1.000	157	0%	160	34.4%	141	35.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HSP70,superfamily_SSF53067
CTNNA1	1495	genome.wustl.edu	37	5	138240092	138240092	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001903.2	+1	validated	p.R451*	1.000	178	0%	149	31.5%	171	3.5%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
MATR3	9782	genome.wustl.edu	37	5	138665038	138665038	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018834.4	+1	reviewed	p.F833C	1.000	157	0%	146	30.8%	166	51.8%	benign(0.156)	deleterious(0.01)	neutral(0.420)	HMMSmart_ZnF_U1
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139815746	139815746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020690.4	+1	reviewed	p.S122T	1.000	104	0%	119	28.6%	21	14.2%	benign(0.036)	deleterious(0.01)	neutral(0.408)	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139908938	139908938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020690.4	+1	reviewed	p.R2136Q	1.000	158	0%	118	33.1%	35	37.1%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139918515	139918515	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020690.4	+1	reviewed	p.I2472M	1.000	129	0%	94	36.2%	74	29.7%	benign(0.307)	tolerated(0.28)	neutral(0.127)	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139928508	139928508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020690.4	+1	reviewed	p.R2566Q	1.000	66	0%	81	40.7%	60	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMCO6	55374	genome.wustl.edu	37	5	140024605	140024605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018502.3	+1	provisional	p.Q468H	1.000	93	0%	156	23.1%	8	0%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	superfamily_ARM repeat
NDUFA2	4695	genome.wustl.edu	37	5	140025184	140025184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002488.4	-1	reviewed	p.S96R	0.764	140	1.4%	232	31.5%	281	41.6%	possibly_damaging(0.574)	tolerated(0.14)	neutral(0.447)	NULL
HARS2	23438	genome.wustl.edu	37	5	140073220	140073220	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000510104	+1	known	p.E85*	0.732	150	0%	187	28.3%	14	42.8%	-	-	-	NULL
ENSG00000249821	0	genome.wustl.edu	37	5	140165806	140165806	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508944	-1	known	NULL	0.000	31	0%	39	43.6%	1	0%	-	-	-	-
PCDHA1	56147	genome.wustl.edu	37	5	140166704	140166704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018900.2	+1	reviewed	p.V277F	0.163	128	0%	259	32.4%	0	-	benign(0.003)	deleterious(0.03)	neutral(0.364)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA1	56147	genome.wustl.edu	37	5	140167390	140167390	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018900.2	+1	reviewed	p.S505	1.000	47	0%	66	12.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA1	56147	genome.wustl.edu	37	5	140167991	140167991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018900.2	+1	reviewed	p.A706T	0.892	40	0%	57	33.3%	0	-	benign(0.081)	tolerated(0.16)	neutral(0.066)	NULL
PCDHA2	56146	genome.wustl.edu	37	5	140175500	140175500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018905.2	+1	reviewed	p.E317D	0.509	61	0%	169	29%	1	100%	benign(0.019)	tolerated(0.12)	neutral(0.262)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA2	56146	genome.wustl.edu	37	5	140176987	140176987	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031495.1	+1	reviewed	p.K813T	0.000	34	0%	54	24.1%	0	-	benign(0.032)	-	-	NULL
PCDHA7	56141	genome.wustl.edu	37	5	140214350	140214350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018910.2	+1	reviewed	p.D128N	1.000	108	0%	180	26.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215100	140215100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018910.2	+1	reviewed	p.D378Y	1.000	82	0%	175	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222421	140222421	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018911.2	+1	reviewed	p.S505	0.996	27	0%	65	21.5%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140229535	140229535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031857.1	+1	reviewed	p.Q485H	0.001	45	0%	102	34.3%	0	-	benign(0.028)	tolerated(0.1)	neutral(0.288)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140248954	140248954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018902.3	+1	reviewed	p.R89Q	1.000	74	1.4%	128	33.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140251082	140251082	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031861.1	+1	reviewed	p.V798	0.998	49	0%	64	37.5%	0	-	-	-	-	NULL
PCDHA12	56137	genome.wustl.edu	37	5	140256572	140256572	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018903.2	+1	reviewed	p.S505	1.000	29	0%	56	41.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256672	140256672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018903.2	+1	reviewed	p.D539N	1.000	54	0%	74	36.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140257088	140257088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018903.2	+1	reviewed	p.K677N	0.003	44	0%	71	39.4%	3	100%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
PCDHAC1	56135	genome.wustl.edu	37	5	140308329	140308329	+	Missense_Mutation	SNP	C	C	T	rs143875858	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018898.3	+1	reviewed	p.L618F	1.000	99	0%	157	29.9%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHAC1	56135	genome.wustl.edu	37	5	140308723	140308723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018898.3	+1	reviewed	p.R749I	0.973	172	0%	234	33.3%	1	0%	possibly_damaging(0.537)	tolerated(0.1)	neutral(0.468)	NULL
PCDHAC2	56134	genome.wustl.edu	37	5	140346698	140346698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018899.5	+1	reviewed	p.R116H	1.000	22	0%	26	38.5%	0	-	possibly_damaging(0.909)	tolerated(0.08)	deleterious(0.662)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140347140	140347140	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018899.5	+1	reviewed	p.R263	0.274	33	0%	47	38.3%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHAC2	56134	genome.wustl.edu	37	5	140348138	140348138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018899.5	+1	reviewed	p.R596Q	1.000	121	0%	215	34.9%	1	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140431319	140431319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013340.2	+1	reviewed	p.E88D	0.998	68	0%	50	26%	0	-	benign(0.031)	tolerated(0.12)	neutral(0.262)	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140476753	140476753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018936.2	+1	reviewed	p.K793N	0.000	185	0%	343	25.9%	10	0%	benign(0)	tolerated(1)	-	NULL
PCDHB5	26167	genome.wustl.edu	37	5	140515089	140515089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015669.2	+1	reviewed	p.E25K	0.832	96	0%	208	33.7%	13	0%	benign(0)	tolerated(0.89)	-	NULL
PCDHB5	26167	genome.wustl.edu	37	5	140515421	140515421	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015669.2	+1	reviewed	p.E135D	0.000	94	0%	206	31.1%	9	0%	benign(0)	tolerated(0.9)	-	superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140530881	140530881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018939.2	+1	reviewed	p.S348L	0.001	104	0%	184	27.7%	0	-	probably_damaging(0.973)	tolerated(0.08)	deleterious(0.715)	superfamily_Cadherin
PCDHB6	56130	genome.wustl.edu	37	5	140531486	140531486	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018939.2	+1	reviewed	p.L550	0.000	40	0%	78	25.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB7	56129	genome.wustl.edu	37	5	140554472	140554472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018940.2	+1	reviewed	p.V686I	0.001	69	0%	114	11.4%	12	50%	benign(0.012)	tolerated(0.1)	neutral(0.287)	NULL
PCDHB8	56128	genome.wustl.edu	37	5	140557710	140557710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019120.2	+1	reviewed	p.R32I	0.000	554	0%	978	12%	2	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Cadherin_2
PCDHB16	57717	genome.wustl.edu	37	5	140563208	140563208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020957.1	+1	reviewed	p.E358D	1.000	59	0%	124	35.5%	3	33.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Cadherin,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140564388	140564388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020957.1	+1	reviewed	p.E752K	0.994	115	0%	205	25.4%	5	40%	benign(0.037)	tolerated(0.28)	neutral(0.034)	NULL
PCDHB10	56126	genome.wustl.edu	37	5	140573018	140573018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018930.3	+1	reviewed	p.S298Y	0.908	89	0%	211	39.3%	1	100%	possibly_damaging(0.828)	deleterious(0)	deleterious(0.758)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140594202	140594202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018933.2	+1	reviewed	p.E169D	0.000	59	0%	125	22.4%	7	28.5%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140596051	140596051	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018933.2	+1	reviewed	p.N786H	0.000	146	0%	277	33.6%	11	81.8%	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
PCDHB14	56122	genome.wustl.edu	37	5	140604601	140604601	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018934.2	+1	reviewed	p.A508	0.000	50	0%	93	24.7%	8	37.5%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB18	54660	genome.wustl.edu	37	5	140615320	140615320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000274705	+1	known	p.K345N	0.159	30	0%	50	38%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140626087	140626087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018935.2	+1	reviewed	p.S314L	0.000	107	0%	197	31.5%	1	0%	benign(0.258)	tolerated(0.39)	neutral(0.043)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140626811	140626811	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018935.2	+1	reviewed	p.N555	0.998	48	0%	76	30.3%	5	0%	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140627280	140627280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018935.2	+1	reviewed	p.R712W	0.005	56	0%	80	35%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC25A2	83884	genome.wustl.edu	37	5	140682849	140682849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031947.2	-1	reviewed	p.R195Q	0.993	117	0%	170	34.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PCDHGA2	56113	genome.wustl.edu	37	5	140719540	140719540	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018915.2	+1	reviewed	p.I334	0.000	67	0%	113	39.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140724790	140724790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018916.3	+1	reviewed	p.S397L	0.836	97	0%	202	31.7%	0	-	benign(0.019)	deleterious(0.03)	neutral(0.365)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730217	140730217	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018922.2	+1	reviewed	p.F130	0.154	91	1.1%	127	33.9%	1	0%	-	-	-	superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730393	140730393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018922.2	+1	reviewed	p.P189L	0.889	90	0%	150	31.3%	1	100%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730862	140730862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018922.2	+1	reviewed	p.F345L	0.000	76	0%	136	30.1%	0	-	benign(0)	tolerated(1)	-	superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140732209	140732209	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018922.2	+1	reviewed	p.I794	0.001	120	0%	278	29.5%	0	-	-	-	-	NULL
PCDHGB2	56103	genome.wustl.edu	37	5	140740776	140740776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018923.2	+1	reviewed	p.E358D	0.996	63	0%	133	36.8%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140741786	140741786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018923.2	+1	reviewed	p.A695D	1.000	84	0%	158	24.1%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDHGA5	56110	genome.wustl.edu	37	5	140744632	140744632	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018918.2	+1	reviewed	p.S245	0.000	48	0%	48	43.8%	0	-	-	-	-	superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140750720	140750720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018924.2	+1	reviewed	p.E253D	1.000	35	0%	90	33.3%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140752364	140752364	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018924.2	+1	reviewed	p.G801	0.005	113	0%	191	33%	0	-	-	-	-	NULL
PCDHGA6	56109	genome.wustl.edu	37	5	140754642	140754642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018919.2	+1	reviewed	p.A331V	0.069	87	0%	173	29.5%	0	-	benign(0.007)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA6	56109	genome.wustl.edu	37	5	140754966	140754966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018919.2	+1	reviewed	p.S439Y	0.000	51	0%	132	25%	1	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140763193	140763193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018920.2	+1	reviewed	p.S243A	0.019	26	0%	46	28.3%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	superfamily_Cadherin-like
PCDHGA7	56108	genome.wustl.edu	37	5	140763408	140763408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018920.2	+1	reviewed	p.F314L	0.086	71	0%	165	38.8%	0	-	benign(0.002)	tolerated(0.71)	neutral(0.002)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140769554	140769554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003736.2	+1	reviewed	p.F701L	0.999	190	0%	316	30.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PCDHGA8	9708	genome.wustl.edu	37	5	140774651	140774651	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032088.1	+1	reviewed	p.V757	0.598	111	0%	149	32.2%	0	-	-	-	-	NULL
PCDHGA8	9708	genome.wustl.edu	37	5	140774760	140774760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032088.1	+1	reviewed	p.S794P	0.003	127	0%	148	25%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
PCDHGA9	56107	genome.wustl.edu	37	5	140784961	140784961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032089.1	+1	reviewed	p.F814L	0.005	71	0%	78	32.1%	0	-	-	-	-	NULL
PCDHGA10	56106	genome.wustl.edu	37	5	140793778	140793778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018913.2	+1	reviewed	p.D346Y	1.000	71	0%	160	25.6%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140798403	140798403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018927.2	+1	reviewed	p.S326F	0.906	112	0%	224	36.2%	0	-	benign(0.223)	deleterious(0)	neutral(0.467)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140799151	140799151	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018927.2	+1	reviewed	p.F575	1.000	22	0%	23	21.7%	3	0%	-	-	-	superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140801739	140801739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018914.2	+1	reviewed	p.F315L	0.003	47	0%	107	27.1%	0	-	benign(0.002)	tolerated(0.72)	neutral(0.002)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140802329	140802329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018914.2	+1	reviewed	p.T512N	0.836	129	0%	191	28.8%	0	-	possibly_damaging(0.865)	tolerated(0.34)	neutral(0.358)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA12	26025	genome.wustl.edu	37	5	140811795	140811795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003735.2	+1	reviewed	p.S490Y	0.990	74	0%	163	31.9%	2	50%	benign(0.262)	tolerated(0.06)	neutral(0.350)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC3	5098	genome.wustl.edu	37	5	140856643	140856643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002588.2	+1	reviewed	p.I320M	1.000	39	0%	50	30%	8	0%	probably_damaging(0.996)	tolerated(0.92)	neutral(0.462)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140865237	140865237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018928.2	+1	reviewed	p.S166L	1.000	33	0%	42	28.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HDAC3	8841	genome.wustl.edu	37	5	141005332	141005332	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003883.3	-1	reviewed	e13-1	1.000	260	0%	286	25.5%	2	100%	-	-	-	-
RELL2	285613	genome.wustl.edu	37	5	141018406	141018406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130029.1	+1	validated	p.R77C	1.000	222	0%	416	30.3%	3	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ARAP3	64411	genome.wustl.edu	37	5	141038146	141038146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022481.5	-1	reviewed	p.K1137N	1.000	148	0%	201	27.9%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RA
ARAP3	64411	genome.wustl.edu	37	5	141039040	141039040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022481.5	-1	reviewed	p.D1091N	1.000	66	0%	65	21.5%	4	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_RhoGAP,superfamily_Rho_GAP
ARAP3	64411	genome.wustl.edu	37	5	141059382	141059382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022481.5	-1	reviewed	p.D178Y	0.968	69	0%	150	31.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RNF14	9604	genome.wustl.edu	37	5	141353306	141353306	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004290.3	+1	reviewed	p.S51	0.999	158	0%	152	30.9%	25	4%	-	-	-	HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like
GNPDA1	10007	genome.wustl.edu	37	5	141391505	141391505	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005471.4	-1	validated	p.E32	0.860	127	0%	255	33.7%	45	44.4%	-	-	-	HMMPfam_Glucosamine_iso,superfamily_SSF100950
NR3C1	2908	genome.wustl.edu	37	5	142779446	142779446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024094.1	-1	reviewed	p.S320Y	1.000	73	0%	106	31.1%	5	20%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_GCR
KCTD16	57528	genome.wustl.edu	37	5	143586884	143586884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020768.3	+1	validated	p.E203*	1.000	124	0.8%	175	34.3%	0	-	-	-	-	NULL
KCTD16	57528	genome.wustl.edu	37	5	143586896	143586896	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020768.3	+1	validated	p.E207*	1.000	120	0%	168	28.6%	0	-	-	-	-	NULL
KCTD16	57528	genome.wustl.edu	37	5	143587043	143587043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020768.3	+1	validated	p.A256S	1.000	74	0%	101	31.7%	1	100%	benign(0.19)	tolerated(0.24)	neutral(0.055)	NULL
PLAC8L1	153770	genome.wustl.edu	37	5	145464036	145464036	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029869.1	-1	provisional	p.E165*	0.990	128	0%	89	20.2%	4	100%	-	-	-	NULL
LARS	51520	genome.wustl.edu	37	5	145523844	145523844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020117.9	-1	reviewed	p.R575I	1.000	216	0%	71	28.2%	68	42.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Nucleotidylyl transferase
LARS	51520	genome.wustl.edu	37	5	145539988	145539988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020117.9	-1	reviewed	p.R219K	1.000	108	0%	72	37.5%	13	15.3%	benign(0.047)	tolerated(0.1)	neutral(0.289)	superfamily_Nucleotidylyl transferase
LARS	51520	genome.wustl.edu	37	5	145557139	145557139	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020117.9	-1	reviewed	p.V32	0.568	135	0%	166	26.5%	31	38.7%	-	-	-	superfamily_Nucleotidylyl transferase
RBM27	54439	genome.wustl.edu	37	5	145608584	145608584	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018989.1	+1	validated	p.E127*	1.000	99	0%	108	14.8%	9	0%	-	-	-	NULL
RBM27	54439	genome.wustl.edu	37	5	145610433	145610433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018989.1	+1	validated	p.S268Y	1.000	96	1%	72	29.2%	11	9%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
RBM27	54439	genome.wustl.edu	37	5	145643188	145643188	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018989.1	+1	validated	p.D775E	1.000	147	0%	129	33.3%	8	50%	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
TCERG1	10915	genome.wustl.edu	37	5	145838889	145838889	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006706.3	+1	reviewed	p.Q294P	1.000	81	0%	114	16.7%	31	0%	unknown(0)	tolerated(0.37)	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145838893	145838911	+	Frame_Shift_Del	DEL	AGTATCAAGTGAGTACCAC	AGTATCAAGTGAGTACCAC	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	AGTATCAAGTGAGTACCAC	AGTATCAAGTGAGTACCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006706.3	+1	reviewed	p.V296fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145878230	145878230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006706.3	+1	reviewed	p.S788L	1.000	200	0%	138	36.2%	21	52.3%	unknown(0)	deleterious(0.03)	-	superfamily_FF domain
PPP2R2B	5521	genome.wustl.edu	37	5	146017938	146017938	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181676.2	-1	reviewed	p.T225	0.372	123	0%	55	27.3%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
STK32A	202374	genome.wustl.edu	37	5	146752738	146752738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001112724.1	+1	validated	p.E262K	1.000	135	0%	66	28.8%	0	-	benign(0.124)	tolerated(0.68)	neutral(0.012)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DPYSL3	1809	genome.wustl.edu	37	5	146795377	146795377	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001387.2	-1	validated	p.E125*	0.997	155	0%	83	18.1%	31	0%	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP2	9832	genome.wustl.edu	37	5	146997676	146997676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014790.3	-1	provisional	p.R715K	1.000	177	0%	98	32.7%	2	0%	benign(0.059)	tolerated(1)	neutral(0.004)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147028030	147028030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014790.3	-1	provisional	p.R282Q	1.000	341	0%	178	32.6%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
JAKMIP2	9832	genome.wustl.edu	37	5	147040649	147040649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014790.3	-1	provisional	p.K163N	1.000	125	0%	99	41.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SPINK5	11005	genome.wustl.edu	37	5	147449995	147449995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127698.1	+1	reviewed	p.A64V	0.006	74	0%	41	31.7%	0	-	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK5	11005	genome.wustl.edu	37	5	147478852	147478852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127698.1	+1	reviewed	p.E356*	0.756	108	0%	73	27.4%	0	-	-	-	-	NULL
SPINK5	11005	genome.wustl.edu	37	5	147486665	147486665	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127698.1	+1	reviewed	p.N515	0.973	101	0%	35	34.3%	0	-	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK5	11005	genome.wustl.edu	37	5	147498123	147498123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127698.1	+1	reviewed	p.K746E	0.001	76	0%	42	31%	0	-	benign(0.394)	tolerated(0.8)	neutral(0.127)	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
SPINK13	153218	genome.wustl.edu	37	5	147661671	147661671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040129.2	+1	provisional	p.R38Q	0.000	145	0%	80	32.5%	0	-	benign(0.004)	tolerated(0.39)	neutral(0.016)	superfamily_Kazal-type serine protease inhibitors
FBXO38	81545	genome.wustl.edu	37	5	147795508	147795508	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205836.1	+1	validated	p.R428*	1.000	179	0%	95	29.5%	11	9%	-	-	-	superfamily_RNI-like
SH3TC2	79628	genome.wustl.edu	37	5	148420228	148420228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024577.3	-1	reviewed	p.K248N	1.000	114	0%	56	41.1%	0	-	possibly_damaging(0.496)	deleterious(0.03)	deleterious(0.530)	superfamily_SH3-domain
ABLIM3	22885	genome.wustl.edu	37	5	148563139	148563139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014945.2	+1	validated	p.C46*	1.000	71	0%	44	47.7%	1	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
AFAP1L1	134265	genome.wustl.edu	37	5	148709233	148709233	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152406.2	+1	validated	p.A605	1.000	73	0%	53	28.3%	0	-	-	-	-	NULL
AFAP1L1	134265	genome.wustl.edu	37	5	148709381	148709381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152406.2	+1	validated	p.R655W	1.000	113	0%	88	39.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ARHGEF37	389337	genome.wustl.edu	37	5	149006760	149006760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001669.2	+1	validated	p.R529Q	0.950	74	0%	46	30.4%	5	20%	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2
PDE6A	5145	genome.wustl.edu	37	5	149278054	149278054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000440.2	-1	reviewed	p.L427M	1.000	145	0%	105	25.7%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
PDE6A	5145	genome.wustl.edu	37	5	149310679	149310679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000440.2	-1	reviewed	p.R257Q	1.000	123	0%	177	36.7%	0	-	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
SLC26A2	1836	genome.wustl.edu	37	5	149359973	149359973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000112.3	+1	reviewed	p.L273I	1.000	180	0%	131	36.6%	16	31.2%	possibly_damaging(0.812)	deleterious(0.02)	deleterious(0.689)	HMMPfam_Sulfate_transp
TIGD6	81789	genome.wustl.edu	37	5	149375387	149375387	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030953.2	-1	validated	p.I175	1.000	149	0%	174	28.7%	1	0%	-	-	-	HMMPfam_DDE
HMGXB3	22993	genome.wustl.edu	37	5	149389835	149389835	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014983.2	+1	validated	p.P158	0.000	57	1.8%	62	22.6%	21	57.1%	-	-	-	NULL
CSF1R	1436	genome.wustl.edu	37	5	149456996	149456996	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005211.3	-1	reviewed	p.L244	0.109	328	0%	348	29.3%	25	0%	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
CAMK2A	815	genome.wustl.edu	37	5	149652713	149652713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015981.3	-1	reviewed	p.F24L	1.000	78	0%	80	32.5%	0	-	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
NDST1	3340	genome.wustl.edu	37	5	149907758	149907758	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001543.4	+1	validated	p.T302	0.000	42	0%	70	15.7%	83	38.5%	-	-	-	NULL
SYNPO	11346	genome.wustl.edu	37	5	150029289	150029289	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007286.5	+1	validated	p.Y484	0.809	30	0%	46	26.1%	9	0%	-	-	-	NULL
ZNF300	91975	genome.wustl.edu	37	5	150276275	150276275	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052860.2	-1	reviewed	p.E176*	0.001	108	0%	69	37.7%	0	-	-	-	-	NULL
ZNF300	91975	genome.wustl.edu	37	5	150276461	150276461	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052860.2	-1	reviewed	p.G114*	0.982	94	0%	55	9.1%	1	0%	-	-	-	NULL
GPX3	2878	genome.wustl.edu	37	5	150407084	150407084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002084.3	+1	reviewed	p.F151V	0.996	58	0%	72	30.6%	18	27.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GSHPx,superfamily_Thioredoxin-like
FAT2	2196	genome.wustl.edu	37	5	150947647	150947647	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001447.2	-1	reviewed	p.S282	0.842	48	0%	34	26.5%	0	-	-	-	-	superfamily_Cadherin-like
G3BP1	10146	genome.wustl.edu	37	5	151179493	151179493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005754.2	+1	reviewed	p.R296I	1.000	96	0%	49	24.5%	146	35.6%	unknown(0)	deleterious(0.05)	-	NULL
GLRA1	2741	genome.wustl.edu	37	5	151234713	151234713	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000171.3	-1	reviewed	p.I195	1.000	229	0.4%	192	35.4%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GLRA1	2741	genome.wustl.edu	37	5	151239414	151239414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000171.3	-1	reviewed	p.F136L	1.000	203	0%	126	29.4%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
GRIA1	2890	genome.wustl.edu	37	5	153026701	153026701	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000827.3	+1	reviewed	p.F145C	1.000	99	0%	37	45.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
FAM114A2	10827	genome.wustl.edu	37	5	153414288	153414288	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000442256	-1	known	p.E76*	0.042	150	0%	152	13.2%	0	-	-	-	-	NULL
MFAP3	4238	genome.wustl.edu	37	5	153429140	153429140	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_024152.1	+1	validated	NULL	0.041	34	0%	24	33.3%	2	0%	-	-	-	-
LARP1	23367	genome.wustl.edu	37	5	154179522	154179522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015315.3	+1	validated	p.S469P	1.000	83	1.2%	84	36.9%	86	48.8%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154280932	154280932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015465.3	-1	validated	p.A994V	1.000	71	0%	45	24.4%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154282160	154282160	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015465.3	-1	validated	p.V935	0.992	221	0%	106	33%	12	41.6%	-	-	-	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154305458	154305458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015465.3	-1	validated	p.K419N	0.989	43	0%	60	31.7%	11	36.3%	probably_damaging(0.993)	tolerated(0.15)	deleterious(0.691)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KIF4B	285643	genome.wustl.edu	37	5	154395819	154395819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099293.1	+1	provisional	p.F800L	0.935	107	0%	134	29.9%	1	0%	benign(0.002)	tolerated(0.48)	neutral(0.011)	NULL
HAVCR1	26762	genome.wustl.edu	37	5	156479479	156479479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099414.1	-1	reviewed	p.S189I	0.001	303	0%	204	28.9%	0	-	unknown(0)	tolerated(0.05)	-	NULL
HAVCR1	26762	genome.wustl.edu	37	5	156482295	156482295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099414.1	-1	reviewed	p.D99G	0.998	59	0%	84	23.8%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
HAVCR2	84868	genome.wustl.edu	37	5	156533969	156533969	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032782.3	-1	validated	p.S21	0.012	23	0%	16	31.2%	17	0%	-	-	-	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156750999	156750999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037332.2	+1	validated	p.S581I	1.000	102	0%	107	31.8%	27	37%	possibly_damaging(0.662)	deleterious(0.01)	deleterious(0.640)	HMMPfam_FragX_IP
CYFIP2	26999	genome.wustl.edu	37	5	156757800	156757800	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037332.2	+1	validated	p.I736S	1.000	194	0%	128	28.9%	50	36%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_FragX_IP
CYFIP2	26999	genome.wustl.edu	37	5	156766115	156766115	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037332.2	+1	validated	p.C812	1.000	72	0%	46	32.6%	48	31.2%	-	-	-	HMMPfam_FragX_IP
ADAM19	8728	genome.wustl.edu	37	5	156916128	156916128	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033274.2	-1	reviewed	p.T769	0.000	82	0%	99	28.3%	11	9%	-	-	-	NULL
C5orf52	100190949	genome.wustl.edu	37	5	157106880	157106880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145132.1	+1	validated	p.I118S	0.531	64	0%	91	24.2%	0	-	benign(0.075)	deleterious(0.02)	neutral(0.388)	NULL
RNF145	153830	genome.wustl.edu	37	5	158589972	158589972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144726.1	-1	provisional	p.I441V	1.000	80	0%	129	11.6%	30	16.6%	benign(0.227)	tolerated(0.24)	neutral(0.060)	NULL
PWWP2A	114825	genome.wustl.edu	37	5	159520275	159520275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130864.1	-1	validated	p.R461Q	0.999	133	0%	95	34.7%	12	50%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159820717	159820717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022090.3	-1	validated	p.L594R	0.998	59	0%	35	22.9%	1	0%	possibly_damaging(0.547)	deleterious(0)	deleterious(0.630)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159821820	159821820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022090.3	-1	validated	p.F226L	1.000	103	0%	67	22.4%	5	60%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159821921	159821921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022090.3	-1	validated	p.R193C	0.995	96	0%	62	29%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160114941	160114941	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025153.2	-1	validated	p.V47	0.709	146	0%	84	40.5%	0	-	-	-	-	NULL
GABRA1	2554	genome.wustl.edu	37	5	161300226	161300226	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000806.5	+1	reviewed	p.K120T	1.000	63	0%	17	23.5%	0	-	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA1	2554	genome.wustl.edu	37	5	161317943	161317943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000806.5	+1	reviewed	p.R248I	1.000	191	0%	66	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HMMR	3161	genome.wustl.edu	37	5	162910091	162910091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142556.1	+1	reviewed	p.S533Y	0.920	26	0%	17	52.9%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HMMR	3161	genome.wustl.edu	37	5	162910314	162910314	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142556.1	+1	reviewed	p.E576*	1.000	58	0%	31	25.8%	8	0%	-	-	-	NULL
MAT2B	27430	genome.wustl.edu	37	5	162943752	162943752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000421814	+1	known	p.G252D	0.000	63	0%	54	33.3%	3	100%	unknown(0)	-	-	HMMPfam_RmlD_sub_bind
MAT2B	27430	genome.wustl.edu	37	5	162945287	162945287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013283.3	+1	reviewed	p.R308Q	0.982	176	0%	148	42.6%	61	39.3%	benign(0.012)	tolerated(0.39)	neutral(0.017)	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
ODZ2	57451	genome.wustl.edu	37	5	167379737	167379737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122679.1	+1	inferred	p.A286V	0.992	133	0%	83	27.7%	0	-	benign(0.051)	deleterious(0.05)	neutral(0.348)	HMMPfam_Ten_N
ODZ2	57451	genome.wustl.edu	37	5	167631511	167631511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122679.1	+1	inferred	p.L1228M	1.000	160	0%	52	23.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat
ODZ2	57451	genome.wustl.edu	37	5	167653195	167653195	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122679.1	+1	inferred	p.N1728	1.000	36	0%	30	30%	1	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167671440	167671440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122679.1	+1	inferred	p.L1837I	1.000	87	0%	77	36.4%	0	-	possibly_damaging(0.724)	tolerated(0.06)	deleterious(0.586)	superfamily_Concanavalin A-like lectins/glucanases
WWC1	23286	genome.wustl.edu	37	5	167881049	167881049	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015238.2	+1	reviewed	p.E868*	0.947	68	0%	67	23.9%	21	23.8%	-	-	-	NULL
SLIT3	6586	genome.wustl.edu	37	5	168151443	168151443	+	Missense_Mutation	SNP	C	C	T	rs138524475	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003062.2	-1	validated	p.A773T	0.212	113	0%	129	24%	11	9%	benign(0)	tolerated(0.81)	neutral(0.001)	HMMPfam_LRR_1,superfamily_L domain-like
SLIT3	6586	genome.wustl.edu	37	5	168310283	168310283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003062.2	-1	validated	p.D158N	0.996	58	0%	62	38.7%	4	75%	benign(0.028)	tolerated(0.36)	neutral(0.022)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
CCDC99	54908	genome.wustl.edu	37	5	169028727	169028727	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000507232	+1	known	p.T519fs	0.714	-	-	-	-	-	-	-	-	-	NULL
DOCK2	1794	genome.wustl.edu	37	5	169138990	169138990	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004946.2	+1	validated	p.R512*	0.998	267	0%	108	39.8%	9	0%	-	-	-	NULL
DOCK2	1794	genome.wustl.edu	37	5	169145682	169145682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004946.2	+1	validated	p.K718N	1.000	105	0%	39	28.2%	12	0%	benign(0.19)	tolerated(0.31)	neutral(0.045)	NULL
FAM196B	100131897	genome.wustl.edu	37	5	169308432	169308432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129891.1	-1	predicted	p.R454Q	1.000	123	0%	54	24.1%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
DOCK2	1794	genome.wustl.edu	37	5	169423165	169423165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004946.2	+1	validated	p.F1023L	1.000	90	0%	24	37.5%	5	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
DOCK2	1794	genome.wustl.edu	37	5	169461444	169461444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004946.2	+1	validated	p.S1170L	0.989	80	0%	50	24%	13	0%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
DOCK2	1794	genome.wustl.edu	37	5	169502959	169502959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004946.2	+1	validated	p.F1579L	1.000	121	0%	73	24.7%	19	0%	benign(0)	tolerated(1)	-	superfamily_Cytochrome c
KCNIP1	30820	genome.wustl.edu	37	5	170145841	170145841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001034837.1	+1	reviewed	p.N58K	1.000	35	0%	23	30.4%	0	-	benign(0.004)	tolerated(1)	-	superfamily_EF-hand
GABRP	2568	genome.wustl.edu	37	5	170235639	170235639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014211.2	+1	reviewed	p.R239W	0.570	381	0.3%	148	37.8%	4	0%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
RANBP17	64901	genome.wustl.edu	37	5	170648817	170648817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022897.2	+1	provisional	p.E799*	1.000	249	0%	81	30.9%	6	83.3%	-	-	-	NULL
RANBP17	64901	genome.wustl.edu	37	5	170669708	170669708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022897.2	+1	provisional	p.S887Y	1.000	130	0%	117	30.8%	11	45.4%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
STK10	6793	genome.wustl.edu	37	5	171480016	171480016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005990.3	-1	reviewed	p.E895K	1.000	211	0%	189	31.7%	13	7.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
STK10	6793	genome.wustl.edu	37	5	171484367	171484367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005990.3	-1	reviewed	p.R775C	1.000	15	0%	24	33.3%	13	15.3%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
CREBRF	153222	genome.wustl.edu	37	5	172513604	172513604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153607.2	+1	validated	p.S37L	1.000	114	0%	73	12.3%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CREBRF	153222	genome.wustl.edu	37	5	172517522	172517522	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153607.2	+1	validated	p.E114*	1.000	121	0%	50	30%	4	0%	-	-	-	NULL
C5orf47	133491	genome.wustl.edu	37	5	173426701	173426701	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144954.1	+1	validated	e3-2	0.993	174	0%	144	20.1%	0	-	-	-	-	-
DRD1	1812	genome.wustl.edu	37	5	174869350	174869350	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000794.3	-1	reviewed	p.V251	0.039	117	0%	186	36.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARL10	285598	genome.wustl.edu	37	5	175793412	175793412	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173664.4	+1	validated	p.A71	0.980	32	0%	65	33.8%	2	0%	-	-	-	HMMPfam_Arf,superfamily_SSF52540
CLTB	1212	genome.wustl.edu	37	5	175824973	175824973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000310418	-1	known	p.R104C	1.000	42	0%	77	33.8%	169	46.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Clathrin_lg_ch
CDHR2	54825	genome.wustl.edu	37	5	176002578	176002578	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017675.4	+1	reviewed	p.I280	1.000	103	0%	128	31.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDHR2	54825	genome.wustl.edu	37	5	176004670	176004670	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017675.4	+1	reviewed	p.F461	0.183	84	0%	129	21.7%	1	100%	-	-	-	HMMSmart_CA,superfamily_Cadherin
CDHR2	54825	genome.wustl.edu	37	5	176011722	176011722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017675.4	+1	reviewed	p.R814W	0.000	52	0%	73	27.4%	0	-	probably_damaging(0.992)	tolerated(0.17)	deleterious(0.506)	HMMPfam_Cadherin,superfamily_Cadherin
UNC5A	90249	genome.wustl.edu	37	5	176295878	176295878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133369.2	+1	validated	p.R212C	1.000	18	0%	29	17.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
FGFR4	2264	genome.wustl.edu	37	5	176523708	176523708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002011.3	+1	reviewed	p.R707W	1.000	45	0%	67	29.9%	11	90.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NSD1	64324	genome.wustl.edu	37	5	176637407	176637407	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022455.4	+1	reviewed	p.F669	0.997	59	0%	58	24.1%	7	42.8%	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176638766	176638766	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022455.4	+1	reviewed	p.I1122M	0.001	176	0%	143	37.8%	7	42.8%	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	NULL
PDLIM7	9260	genome.wustl.edu	37	5	176910869	176910869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005451.3	-1	reviewed	p.A429V	1.000	52	0%	74	33.8%	80	23.7%	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PDLIM7	9260	genome.wustl.edu	37	5	176910931	176910931	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005451.3	-1	reviewed	p.D408	0.915	45	0%	96	34.4%	132	27.2%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LOC202181	202181	genome.wustl.edu	37	5	177054520	177054520	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026921.1	-1	predicted	NULL	1.000	93	0%	71	21.1%	6	33.3%	-	-	-	-
HNRNPAB	3182	genome.wustl.edu	37	5	177637233	177637233	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031266.2	+1	reviewed	p.S296	1.000	33	0%	61	24.6%	499	45.4%	-	-	-	NULL
ZNF354A	6940	genome.wustl.edu	37	5	178139290	178139290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005649.2	-1	validated	p.S530Y	0.716	213	0%	189	38.1%	23	69.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354A	6940	genome.wustl.edu	37	5	178139674	178139674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005649.2	-1	validated	p.R402I	1.000	170	0%	124	21.8%	9	33.3%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354A	6940	genome.wustl.edu	37	5	178139890	178139890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005649.2	-1	validated	p.P330L	0.955	112	0%	84	19%	5	80%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
ZNF354B	117608	genome.wustl.edu	37	5	178310910	178310910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058230.2	+1	validated	p.R486I	0.996	183	0%	156	26.3%	14	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354B	117608	genome.wustl.edu	37	5	178311278	178311278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058230.2	+1	validated	p.D609N	0.000	50	0%	33	39.4%	6	66.6%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
ENSG00000249299	0	genome.wustl.edu	37	5	178358274	178358274	+	RNA	SNP	C	C	A	rs111355847	byCluster;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000503510	-1	novel	NULL	0.000	50	0%	46	32.6%	6	66.6%	-	-	-	-
ZFP2	80108	genome.wustl.edu	37	5	178358586	178358586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030613.2	+1	provisional	p.K91T	0.259	87	0%	81	33.3%	2	100%	benign(0.021)	tolerated(0.63)	neutral(0.005)	superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178391932	178391932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182594.2	+1	validated	p.N176T	0.005	111	0%	74	39.2%	1	0%	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178391990	178391990	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182594.2	+1	validated	p.K195	0.185	103	0%	60	15%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF454	285676	genome.wustl.edu	37	5	178392301	178392301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182594.2	+1	validated	p.P299H	1.000	72	0%	49	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
GRM6	2916	genome.wustl.edu	37	5	178408725	178408725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000843.3	-1	reviewed	p.R856Q	1.000	81	0%	111	36%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
GRM6	2916	genome.wustl.edu	37	5	178408806	178408806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000843.3	-1	reviewed	p.S829L	1.000	67	0%	86	40.7%	0	-	benign(0.252)	deleterious(0)	deleterious(0.471)	HMMPfam_7tm_3
ZNF354C	30832	genome.wustl.edu	37	5	178506429	178506429	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014594.1	+1	provisional	p.E332D	0.006	95	0%	58	41.4%	1	0%	possibly_damaging(0.678)	tolerated(0.09)	deleterious(0.538)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF354C	30832	genome.wustl.edu	37	5	178506724	178506724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014594.1	+1	provisional	p.R431W	0.984	96	0%	52	42.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ADAMTS2	9509	genome.wustl.edu	37	5	178540982	178540982	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014244.2	-1	reviewed	p.V1174	0.885	406	0%	606	31.2%	32	18.7%	-	-	-	NULL
ADAMTS2	9509	genome.wustl.edu	37	5	178548672	178548672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014244.2	-1	reviewed	p.K1056N	1.000	119	0%	186	37.6%	25	56%	benign(0.009)	tolerated(0.12)	neutral(0.261)	NULL
LOC100289470	100289470	genome.wustl.edu	37	5	178951602	178951602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342585.1	+1	model	p.T215A	0.000	187	0%	255	22.4%	0	-	-	-	-	NULL
LOC100289470	100289470	genome.wustl.edu	37	5	179079416	179079416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342585.1	+1	model	p.D269N	0.000	250	0%	461	29.1%	0	-	unknown(0)	-	-	NULL
CANX	821	genome.wustl.edu	37	5	179132791	179132791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024649.1	+1	reviewed	p.D37N	1.000	263	0%	323	32.5%	448	44.4%	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
RNF130	55819	genome.wustl.edu	37	5	179393884	179393884	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018434.4	-1	reviewed	p.R358*	1.000	100	0%	151	37.7%	89	2.2%	-	-	-	NULL
RNF130	55819	genome.wustl.edu	37	5	179440128	179440128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018434.4	-1	reviewed	p.S209Y	1.000	86	0%	41	58.5%	38	10.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RNF130	55819	genome.wustl.edu	37	5	179440253	179440253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018434.4	-1	reviewed	p.S167R	0.996	78	0%	39	35.9%	19	15.7%	benign(0.053)	tolerated(0.56)	neutral(0.010)	HMMPfam_PA,superfamily_SSF52025
RASGEF1C	255426	genome.wustl.edu	37	5	179538515	179538515	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175062.3	-1	validated	p.F415	0.997	107	0%	171	28.1%	1	0%	-	-	-	HMMSmart_SM00147,superfamily_Ras GEF
GFPT2	9945	genome.wustl.edu	37	5	179755293	179755293	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005110.2	-1	provisional	p.E194*	1.000	170	0%	214	36.4%	1	0%	-	-	-	HMMPfam_GATase_2,superfamily_SSF56235
GFPT2	9945	genome.wustl.edu	37	5	179763551	179763551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005110.2	-1	provisional	p.E48K	0.893	160	0%	245	35.1%	1	0%	benign(0.11)	tolerated(0.45)	neutral(0.021)	HMMPfam_GATase_2,superfamily_SSF56235
IRF4	3662	genome.wustl.edu	37	6	398927	398927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002460.2	+1	validated	p.A246V	1.000	63	0%	86	33.7%	16	0%	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
C6orf195	154386	genome.wustl.edu	37	6	2623694	2623694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152554.2	-1	validated	p.E121D	0.000	90	0%	68	26.5%	1	100%	unknown(0)	-	-	NULL
MYLK4	340156	genome.wustl.edu	37	6	2671574	2671574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012418.3	-1	validated	p.K376N	0.969	81	1.2%	93	37.6%	0	-	benign(0.086)	tolerated(0.31)	neutral(0.034)	NULL
WRNIP1	56897	genome.wustl.edu	37	6	2769106	2769106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020135.2	+1	reviewed	p.K335T	1.000	109	0%	177	28.2%	76	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SERPINB1	1992	genome.wustl.edu	37	6	2834189	2834189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030666.2	-1	provisional	p.D265N	0.000	18	0%	18	44.4%	64	17.1%	benign(0.005)	tolerated(0.42)	neutral(0.014)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB6	5269	genome.wustl.edu	37	6	2948900	2948900	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004568.4	-1	validated	p.E255*	0.566	112	0%	147	27.2%	126	12.6%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
PXDC1	221749	genome.wustl.edu	37	6	3737393	3737393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183373.3	-1	validated	p.R129I	1.000	195	0%	241	30.3%	16	37.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_PX
PRPF4B	8899	genome.wustl.edu	37	6	4032426	4032426	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003913.4	+1	reviewed	p.S225	0.997	65	0%	68	36.8%	17	17.6%	-	-	-	NULL
PRPF4B	8899	genome.wustl.edu	37	6	4032607	4032607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003913.4	+1	reviewed	p.R286C	0.997	40	0%	49	28.6%	11	63.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PRPF4B	8899	genome.wustl.edu	37	6	4056649	4056649	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003913.4	+1	reviewed	p.F854C	1.000	224	0%	131	27.5%	26	57.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAM217A	222826	genome.wustl.edu	37	6	4069401	4069401	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173563.1	-1	predicted	p.K352N	0.858	152	0%	117	27.4%	0	-	benign(0.261)	deleterious(0)	deleterious(0.472)	NULL
C6orf201	404220	genome.wustl.edu	37	6	4122245	4122245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085401.1	+1	validated	p.R116I	0.000	121	0%	80	36.2%	0	-	benign(0.024)	tolerated(0.08)	neutral(0.301)	NULL
RPP40	10799	genome.wustl.edu	37	6	4995373	4995373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006638.2	-1	validated	p.F344C	1.000	100	0%	116	31.9%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribonuc_P_40
RPP40	10799	genome.wustl.edu	37	6	4999053	4999053	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006638.2	-1	validated	p.E152D	0.501	81	0%	137	29.9%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_Ribonuc_P_40
F13A1	2162	genome.wustl.edu	37	6	6305753	6305753	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000451619	-1	known	p.A75V	0.000	155	0%	85	23.5%	2	0%	-	-	-	HMMPfam_Transglut_N,superfamily_E set domains
CAGE1	285782	genome.wustl.edu	37	6	7373724	7373724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205864.2	-1	validated	p.K307T	0.000	340	0%	267	26.2%	0	-	possibly_damaging(0.478)	deleterious(0.01)	deleterious(0.564)	NULL
CAGE1	285782	genome.wustl.edu	37	6	7374171	7374171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205864.2	-1	validated	p.E158A	0.063	189	0%	121	32.2%	0	-	benign(0.313)	tolerated(0.08)	neutral(0.397)	NULL
DSP	1832	genome.wustl.edu	37	6	7580074	7580074	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004415.2	+1	reviewed	p.T1217	1.000	49	0%	43	25.6%	5	20%	-	-	-	NULL
BMP6	654	genome.wustl.edu	37	6	7880479	7880479	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001718.4	+1	reviewed	p.K482T	1.000	226	0%	183	27.3%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
MUTED	63915	genome.wustl.edu	37	6	8015955	8015955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201280.1	-1	reviewed	p.R164I	0.981	264	0%	203	31.5%	10	30%	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	NULL
OFCC1	266553	genome.wustl.edu	37	6	9897124	9897124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000316020	-1	known	p.R275I	0.000	79	0%	37	29.7%	0	-	possibly_damaging(0.903)	-	-	NULL
OFCC1	266553	genome.wustl.edu	37	6	9897195	9897195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000316020	-1	known	p.M251I	0.000	84	0%	34	32.4%	0	-	benign(0.007)	-	-	NULL
TFAP2A	7020	genome.wustl.edu	37	6	10400775	10400775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003220.2	-1	reviewed	p.E311K	1.000	103	0%	228	22.8%	4	75%	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_TF_AP-2
GCNT2	2651	genome.wustl.edu	37	6	10621675	10621675	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145649.4	+1	reviewed	p.H339	0.668	94	0%	112	34.8%	7	14.2%	-	-	-	NULL
PAK1IP1	55003	genome.wustl.edu	37	6	10704880	10704880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017906.2	+1	validated	p.L213I	1.000	197	0%	123	27.6%	17	23.5%	benign(0.082)	tolerated(0.27)	neutral(0.040)	HMMSmart_WD40,superfamily_WD40_like
PAK1IP1	55003	genome.wustl.edu	37	6	10707719	10707719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017906.2	+1	validated	p.I271T	1.000	257	0%	179	27.9%	43	44.1%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
MAK	4117	genome.wustl.edu	37	6	10804098	10804098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005906.3	-1	reviewed	p.R173I	1.000	92	0%	90	31.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GCM2	9247	genome.wustl.edu	37	6	10874513	10874513	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004752.3	-1	reviewed	p.S412	0.000	153	0%	171	33.9%	0	-	-	-	-	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10907891	10907891	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040274.2	+1	validated	p.E265*	0.998	133	0%	76	30.3%	1	0%	-	-	-	NULL
SYCP2L	221711	genome.wustl.edu	37	6	10924791	10924791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040274.2	+1	validated	p.E379K	0.997	126	0%	79	32.9%	0	-	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
ELOVL2	54898	genome.wustl.edu	37	6	11011016	11011016	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017770.3	-1	validated	p.E10	0.995	138	0%	68	32.4%	0	-	-	-	-	NULL
SIRT5	23408	genome.wustl.edu	37	6	13599362	13599362	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012241.3	+1	reviewed	p.L239R	0.996	101	0%	107	29%	12	41.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
RANBP9	10048	genome.wustl.edu	37	6	13634669	13634669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005493.2	-1	reviewed	p.E597K	1.000	96	0%	54	29.6%	63	44.4%	benign(0.124)	deleterious(0.04)	neutral(0.359)	NULL
RNF182	221687	genome.wustl.edu	37	6	13978019	13978019	+	Silent	SNP	C	C	T	rs146298832	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152737.3	+1	validated	p.L223	0.986	226	0%	154	30.5%	1	0%	-	-	-	NULL
CD83	9308	genome.wustl.edu	37	6	14133900	14133900	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004233.3	+1	validated	p.E135*	0.048	185	0%	127	37.8%	10	20%	-	-	-	superfamily_Immunoglobulin
JARID2	3720	genome.wustl.edu	37	6	15501454	15501454	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004973.2	+1	reviewed	p.F754	0.995	29	0%	65	43.1%	13	46.1%	-	-	-	NULL
JARID2	3720	genome.wustl.edu	37	6	15507482	15507482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004973.2	+1	reviewed	p.S886L	1.000	112	0%	155	31.6%	22	45.4%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMSmart_SM00558
DTNBP1	84062	genome.wustl.edu	37	6	15524782	15524782	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032122.3	-1	reviewed	p.E262	0.003	119	0%	167	39.5%	57	45.6%	-	-	-	HMMPfam_Dysbindin
CAP2	10486	genome.wustl.edu	37	6	17556593	17556593	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006366.2	+1	reviewed	p.E452*	1.000	193	0%	166	27.1%	8	75%	-	-	-	HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein,PatternScan_CAP_2
KIF13A	63971	genome.wustl.edu	37	6	17772258	17772258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022113.4	-1	validated	p.V1453I	0.045	119	0%	94	40.4%	22	40.9%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
E2F3	1871	genome.wustl.edu	37	6	20483134	20483134	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001949.3	+1	reviewed	p.E289	1.000	76	0%	50	22%	10	20%	-	-	-	NULL
CDKAL1	54901	genome.wustl.edu	37	6	21201492	21201492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017774.3	+1	reviewed	p.S512L	1.000	54	0%	40	40%	18	44.4%	possibly_damaging(0.905)	deleterious(0.01)	deleterious(0.765)	NULL
HDGFL1	154150	genome.wustl.edu	37	6	22569930	22569930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138574.2	+1	provisional	p.F42L	1.000	79	0%	133	39.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748
DCDC2	51473	genome.wustl.edu	37	6	24278332	24278332	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016356.3	-1	reviewed	p.T289	0.000	355	0%	203	32%	10	40%	-	-	-	NULL
GPLD1	2822	genome.wustl.edu	37	6	24447160	24447160	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001503.2	-1	reviewed	p.D576Y	0.997	107	0%	102	22.5%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ALDH5A1	7915	genome.wustl.edu	37	6	24528375	24528375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170740.1	+1	reviewed	p.P455S	1.000	58	0%	35	22.9%	14	57.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aldedh,superfamily_ALDH-like
KIAA0319	9856	genome.wustl.edu	37	6	24570254	24570254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014809.3	-1	reviewed	p.R623I	0.998	120	0%	54	37%	1	100%	possibly_damaging(0.667)	deleterious(0.01)	deleterious(0.641)	HMMSmart_SM00089,superfamily_PKD domain,HMMSmart_SM00060
TDP2	51567	genome.wustl.edu	37	6	24651150	24651150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016614.2	-1	reviewed	p.F319V	0.999	132	1.5%	167	11.4%	22	9%	possibly_damaging(0.61)	deleterious(0.01)	deleterious(0.617)	HMMPfam_Exo_endo_phos
TDP2	51567	genome.wustl.edu	37	6	24651202	24651202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016614.2	-1	reviewed	p.M301I	0.312	151	0%	211	32.7%	30	43.3%	benign(0.004)	tolerated(0.55)	neutral(0.007)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
FAM65B	9750	genome.wustl.edu	37	6	24809984	24809984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014722.2	-1	validated	p.E1023*	1.000	125	0%	85	37.6%	0	-	-	-	-	superfamily_ARM repeat
LRRC16A	55604	genome.wustl.edu	37	6	25285041	25285041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017640.5	+1	validated	p.E14D	1.000	179	0%	209	31.6%	3	0%	probably_damaging(0.987)	tolerated(0.3)	neutral(0.465)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25556971	25556971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017640.5	+1	validated	p.E879*	1.000	69	0%	24	29.2%	8	25%	-	-	-	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25556997	25556997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017640.5	+1	validated	p.E887D	1.000	76	0%	17	23.5%	10	40%	possibly_damaging(0.651)	tolerated(0.55)	neutral(0.236)	NULL
HIST1H2BA	255626	genome.wustl.edu	37	6	25727247	25727247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170610.2	+1	reviewed	p.E37D	1.000	455	0%	361	34.1%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
SLC17A4	10050	genome.wustl.edu	37	6	25769286	25769286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005495.2	+1	validated	p.M55I	0.957	134	0%	56	26.8%	0	-	benign(0.024)	deleterious(0)	neutral(0.446)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC17A3	10786	genome.wustl.edu	37	6	25861875	25861875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098486.1	-1	validated	p.R201I	0.851	157	0%	75	28%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC17A3	10786	genome.wustl.edu	37	6	25862047	25862047	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098486.1	-1	validated	p.R172*	0.276	133	0%	65	35.4%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC17A2	10246	genome.wustl.edu	37	6	25914874	25914874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005835.2	-1	validated	p.S363F	0.995	104	0%	61	9.8%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
HIST1H1T	3010	genome.wustl.edu	37	6	26108200	26108200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005323.3	-1	reviewed	p.N41S	0.000	103	0%	43	23.3%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785
HIST1H4F	8361	genome.wustl.edu	37	6	26240930	26240930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003540.3	+1	reviewed	p.R93C	1.000	70	0%	82	15.9%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
BTN3A1	11119	genome.wustl.edu	37	6	26409879	26409879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007048.5	+1	validated	p.K278N	0.013	99	0%	67	25.4%	25	24%	benign(0.004)	tolerated(0.56)	neutral(0.006)	NULL
BTN3A1	11119	genome.wustl.edu	37	6	26413480	26413480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007048.5	+1	validated	p.P368S	0.000	246	0%	174	34.5%	43	16.2%	probably_damaging(0.989)	tolerated(0.44)	neutral(0.452)	HMMSmart_SM00589
BTN3A3	10384	genome.wustl.edu	37	6	26444392	26444392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006994.4	+1	validated	p.S98L	0.000	252	0.4%	140	21.4%	54	3.7%	benign(0.016)	tolerated(0.1)	neutral(0.287)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ENSG00000250311	0	genome.wustl.edu	37	6	26476599	26476599	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000511597	-1	known	NULL	0.000	47	0%	17	41.2%	4	25%	-	-	-	-
PRSS16	10279	genome.wustl.edu	37	6	27220721	27220721	+	Silent	SNP	C	C	T	rs191407230	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000475106	+1	known	p.R160W	0.983	90	0%	166	30.7%	9	33.3%	-	-	-	HMMPfam_Peptidase_S28
POM121L2	94026	genome.wustl.edu	37	6	27276890	27276890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000444565	-1	known	p.K1020N	0.003	150	0%	219	34.7%	0	-	probably_damaging(0.978)	tolerated(0.29)	neutral(0.450)	NULL
POM121L2	94026	genome.wustl.edu	37	6	27278859	27278859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000444565	-1	known	p.G364V	0.001	153	0%	203	35%	0	-	benign(0.096)	tolerated(0.19)	neutral(0.057)	NULL
HIST1H1B	3009	genome.wustl.edu	37	6	27835002	27835002	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005322.2	-1	reviewed	p.T102	0.991	85	0%	136	31.6%	1	0%	-	-	-	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785
HIST1H3I	8354	genome.wustl.edu	37	6	27839694	27839694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003533.2	-1	reviewed	p.E134K	1.000	116	0%	194	28.9%	0	-	probably_damaging(0.969)	-	-	HMMSmart_SM00428,superfamily_Histone-fold
OR2B2	81697	genome.wustl.edu	37	6	27879274	27879274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033057.2	-1	validated	p.S275Y	0.185	78	0%	63	34.9%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF192P1	651302	genome.wustl.edu	37	6	28134777	28134777	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145129.1	+1	provisional	p.Q147	0.156	160	0%	178	34.3%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PGBD1	84547	genome.wustl.edu	37	6	28269252	28269252	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032507.3	+1	reviewed	p.E541*	1.000	94	0%	50	32%	2	50%	-	-	-	NULL
PGBD1	84547	genome.wustl.edu	37	6	28269621	28269621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032507.3	+1	reviewed	p.E664*	0.981	109	0%	64	28.1%	4	75%	-	-	-	NULL
ZSCAN12	9753	genome.wustl.edu	37	6	28359367	28359367	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000361028	-1	known	p.E234*	0.095	157	0%	136	36.8%	0	-	-	-	-	NULL
ZSCAN12	9753	genome.wustl.edu	37	6	28360757	28360757	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000361028	-1	known	p.E157*	0.053	198	0%	196	32.1%	0	-	-	-	-	NULL
OR2B3	442184	genome.wustl.edu	37	6	29054407	29054407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005226.2	-1	validated	p.L207I	0.000	51	0%	28	35.7%	0	-	possibly_damaging(0.888)	tolerated(0.09)	deleterious(0.644)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2B3	442184	genome.wustl.edu	37	6	29054843	29054843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005226.2	-1	validated	p.F61L	0.996	180	0%	118	63.6%	0	-	possibly_damaging(0.531)	deleterious(0.03)	deleterious(0.543)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2J2	26707	genome.wustl.edu	37	6	29141742	29141742	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030905.2	+1	validated	p.I110	0.000	159	0%	157	34.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5V1	81696	genome.wustl.edu	37	6	29323108	29323108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030876.5	-1	validated	p.I289L	0.989	80	0%	50	40%	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5V1	81696	genome.wustl.edu	37	6	29323709	29323709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030876.5	-1	validated	p.K88N	0.000	64	0%	32	46.9%	0	-	benign(0.069)	tolerated(0.14)	neutral(0.254)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MAS1L	116511	genome.wustl.edu	37	6	29455512	29455512	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052967.1	-1	provisional	p.T56	0.000	63	1.6%	29	41.4%	0	-	-	-	-	NULL
HLA-G	3135	genome.wustl.edu	37	6	29797319	29797319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002127.5	+1	reviewed	p.Q248H	0.850	58	0%	90	17.8%	7	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
DHX16	8449	genome.wustl.edu	37	6	30623000	30623000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003587.4	-1	reviewed	p.V925	0.995	74	0%	104	29.8%	86	32.5%	-	-	-	HMMPfam_DUF1605
MDC1	9656	genome.wustl.edu	37	6	30671903	30671903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014641.2	-1	reviewed	p.S1686Y	0.365	107	0%	127	23.6%	36	41.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MDC1	9656	genome.wustl.edu	37	6	30673009	30673009	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014641.2	-1	reviewed	p.S1317	0.020	184	0%	198	23.2%	24	45.8%	-	-	-	NULL
DDR1	780	genome.wustl.edu	37	6	30865856	30865856	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000484556	+1	known	p.Q98R	0.771	56	0%	83	32.5%	199	42.2%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
DPCR1	135656	genome.wustl.edu	37	6	30918057	30918057	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000462446	+1	known	p.E606*	0.000	237	0%	249	30.1%	0	-	-	-	-	NULL
DPCR1	135656	genome.wustl.edu	37	6	30918698	30918698	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000462446	+1	known	p.P819	0.000	258	0%	270	27%	0	-	-	-	-	NULL
DPCR1	135656	genome.wustl.edu	37	6	30919857	30919857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080870.3	+1	validated	p.E48*	0.000	147	0%	224	26.8%	0	-	-	-	-	NULL
DPCR1	135656	genome.wustl.edu	37	6	30920080	30920080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080870.3	+1	validated	p.S122Y	0.000	96	0%	111	36.9%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
CCHCR1	54535	genome.wustl.edu	37	6	31113494	31113494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105564.1	-1	validated	p.R558C	0.968	30	0%	23	39.1%	24	41.6%	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_HCR
BAG6	7917	genome.wustl.edu	37	6	31608030	31608030	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441793	-1	known	p.R177H	0.122	74	0%	130	32.3%	255	35.2%	-	-	-	NULL
BAG6	7917	genome.wustl.edu	37	6	31617402	31617402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004639.3	-1	reviewed	p.M37I	1.000	124	0%	209	37.8%	84	45.2%	benign(0.001)	tolerated(0.8)	neutral(0.001)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
LY6G6F	259215	genome.wustl.edu	37	6	31675500	31675500	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003693.1	+1	provisional	p.C106	0.004	95	0%	96	37.5%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
C6orf25	80739	genome.wustl.edu	37	6	31692658	31692658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000480039	+1	known	p.L220I	0.007	37	0%	50	26%	0	-	unknown(0)	-	-	NULL
VWA7	80737	genome.wustl.edu	37	6	31743922	31743922	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025258.2	-1	validated	p.N111T	1.000	57	0%	88	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC44A4	80736	genome.wustl.edu	37	6	31832433	31832433	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025257.2	-1	reviewed	p.C669*	0.995	49	0%	49	24.5%	10	10%	-	-	-	HMMPfam_DUF580
TNXB	7148	genome.wustl.edu	37	6	32037502	32037502	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019105.6	-1	reviewed	p.S1805	1.000	30	0%	38	34.2%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32038079	32038079	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019105.6	-1	reviewed	p.F1701	0.481	20	0%	32	34.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RPS18	6222	genome.wustl.edu	37	6	33243786	33243786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022551.2	+1	reviewed	p.K78N	1.000	77	0%	139	10.1%	8027	9%	benign(0.019)	tolerated(0.21)	neutral(0.045)	HMMPfam_Ribosomal_S13,superfamily_S13-like H2TH domain
B3GALT4	8705	genome.wustl.edu	37	6	33246001	33246001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003782.3	+1	reviewed	p.L269M	0.793	49	0%	39	30.8%	6	33.3%	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_Galactosyl_T
WDR46	9277	genome.wustl.edu	37	6	33256883	33256883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005452.5	-1	validated	p.R22I	0.985	189	0%	220	30%	24	37.5%	possibly_damaging(0.59)	deleterious(0.04)	deleterious(0.553)	NULL
DAXX	1616	genome.wustl.edu	37	6	33288597	33288597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001141970.1	-1	reviewed	p.D331N	1.000	31	0%	58	36.2%	102	40.1%	unknown(0)	tolerated(0.06)	-	HMMPfam_Daxx
DAXX	1616	genome.wustl.edu	37	6	33289535	33289535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001141970.1	-1	reviewed	p.K68N	1.000	78	0%	102	29.4%	29	34.4%	probably_damaging(0.976)	tolerated(0.05)	deleterious(0.763)	HMMPfam_Daxx
GRM4	2914	genome.wustl.edu	37	6	34024461	34024461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000841.1	-1	reviewed	p.G343D	1.000	19	0%	45	26.7%	1	0%	benign(0.049)	tolerated(0.28)	neutral(0.035)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM4	2914	genome.wustl.edu	37	6	34101069	34101069	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000841.1	-1	reviewed	p.E69*	1.000	27	0%	31	22.6%	1	100%	-	-	-	superfamily_Periplasmic binding protein-like I
PACSIN1	29993	genome.wustl.edu	37	6	34500203	34500203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020804.2	+1	validated	p.E411K	1.000	32	0%	63	14.3%	5	80%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
C6orf106	64771	genome.wustl.edu	37	6	34574488	34574488	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024294.2	-1	validated	p.F235	1.000	204	0%	119	30.3%	36	41.6%	-	-	-	NULL
UHRF1BP1	54887	genome.wustl.edu	37	6	34840117	34840117	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017754.3	+1	validated	p.E1409*	1.000	130	0%	75	70.7%	4	50%	-	-	-	NULL
SCUBE3	222663	genome.wustl.edu	37	6	35207596	35207596	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152753.2	+1	provisional	p.F299	1.000	65	0%	64	35.9%	3	33.3%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
SCUBE3	222663	genome.wustl.edu	37	6	35213186	35213186	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152753.2	+1	provisional	p.L861	1.000	63	0%	80	33.8%	1	0%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FANCE	2178	genome.wustl.edu	37	6	35423697	35423697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021922.2	+1	reviewed	p.R141Q	0.481	44	0%	60	35%	2	100%	benign(0.004)	deleterious(0.03)	neutral(0.364)	NULL
TULP1	7287	genome.wustl.edu	37	6	35480625	35480625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003322.3	-1	reviewed	p.R4Q	0.997	42	0%	67	28.4%	0	-	benign(0)	tolerated(1)	-	NULL
SRPK1	6732	genome.wustl.edu	37	6	35803115	35803115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003137.3	-1	reviewed	p.A645V	0.944	96	0%	56	30.4%	44	45.4%	possibly_damaging(0.829)	deleterious(0.04)	deleterious(0.663)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SRPK1	6732	genome.wustl.edu	37	6	35803161	35803161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003137.3	-1	reviewed	p.L630V	1.000	98	0%	52	48.1%	43	46.5%	benign(0.133)	deleterious(0.02)	neutral(0.394)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SRPK1	6732	genome.wustl.edu	37	6	35838242	35838242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003137.3	-1	reviewed	p.K269N	1.000	390	0%	257	10.5%	14	28.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC26A8	116369	genome.wustl.edu	37	6	35911688	35911688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052961.2	-1	reviewed	p.E968*	0.000	163	0%	134	27.6%	0	-	-	-	-	NULL
FGD2	221472	genome.wustl.edu	37	6	36979618	36979618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173558.3	+1	validated	p.R172H	1.000	131	0%	123	30.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
DNAH8	1769	genome.wustl.edu	37	6	38754599	38754599	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.F601	1.000	135	0%	86	31.4%	1	0%	-	-	-	HMMPfam_DHC_N1
DNAH8	1769	genome.wustl.edu	37	6	38810451	38810451	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.L1322	0.847	65	0%	29	34.5%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38810580	38810580	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.I1365	0.997	92	0%	30	33.3%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38820538	38820538	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.I1628	0.036	111	0%	42	28.6%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH8	1769	genome.wustl.edu	37	6	38840320	38840320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.E2116D	1.000	99	0%	51	37.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38840349	38840349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.T2126I	1.000	119	0.8%	56	21.4%	0	-	benign(0.406)	tolerated(0.44)	neutral(0.143)	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38858447	38858447	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.Y2614*	1.000	308	0%	173	24.9%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38867624	38867624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.L2829I	1.000	317	0%	149	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38877323	38877323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.L2964F	1.000	171	0%	97	29.9%	0	-	possibly_damaging(0.755)	tolerated(0.15)	deleterious(0.520)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH8	1769	genome.wustl.edu	37	6	38897407	38897407	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.E3530*	1.000	65	0%	41	46.3%	0	-	-	-	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38941566	38941566	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001371.2	+1	validated	p.R4002*	0.537	142	0%	112	24.1%	0	-	-	-	-	HMMPfam_Dynein_heavy
KIF6	221458	genome.wustl.edu	37	6	39513448	39513448	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145027.4	-1	validated	p.T400P	0.927	153	0%	137	32.1%	0	-	benign(0.127)	tolerated(0.26)	neutral(0.045)	NULL
TSPO2	222642	genome.wustl.edu	37	6	41010852	41010852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010873.2	+1	validated	p.Y43C	0.357	166	0%	135	27.4%	1	0%	possibly_damaging(0.927)	deleterious(0.01)	deleterious(0.780)	HMMPfam_TspO_MBR
TREM2	54209	genome.wustl.edu	37	6	41129248	41129248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018965.2	-1	reviewed	p.K48N	1.000	48	0%	49	40.8%	26	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-set,superfamily_Immunoglobulin
TREML4	285852	genome.wustl.edu	37	6	41204301	41204301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198153.2	+1	validated	p.A195V	0.115	128	0%	190	34.7%	0	-	unknown(0)	tolerated(0.22)	-	NULL
TREM1	54210	genome.wustl.edu	37	6	41248863	41248863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018643.2	-1	provisional	p.E145D	0.000	126	0%	91	24.2%	1	0%	benign(0.092)	tolerated(0.49)	neutral(0.018)	NULL
TREM1	54210	genome.wustl.edu	37	6	41250134	41250134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018643.2	-1	provisional	p.K135N	0.037	64	0%	34	17.6%	4	0%	benign(0.095)	deleterious(0.02)	neutral(0.390)	NULL
TFEB	7942	genome.wustl.edu	37	6	41658638	41658638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007162.2	-1	validated	p.E77D	1.000	40	0%	61	34.4%	12	0%	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	NULL
BYSL	705	genome.wustl.edu	37	6	41900101	41900101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004053.3	+1	reviewed	p.A324V	1.000	52	0%	39	33.3%	53	50.9%	possibly_damaging(0.705)	tolerated(0.18)	neutral(0.310)	HMMPfam_Bystin
MRPS10	55173	genome.wustl.edu	37	6	42179541	42179541	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018141.3	-1	reviewed	p.E101*	1.000	120	0%	117	29.1%	22	18.1%	-	-	-	HMMPfam_Ribosomal_S10,superfamily_Ribosomal protein S10
TRERF1	55809	genome.wustl.edu	37	6	42232560	42232560	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033502.2	-1	reviewed	p.F506C	0.998	100	0%	218	27.5%	0	-	probably_damaging(0.953)	tolerated(0.05)	deleterious(0.742)	NULL
UBR2	23304	genome.wustl.edu	37	6	42584982	42584982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015255.2	+1	reviewed	p.Y396C	1.000	184	0%	124	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBR2	23304	genome.wustl.edu	37	6	42585058	42585058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015255.2	+1	reviewed	p.F421L	1.000	122	0%	98	29.6%	1	0%	benign(0)	tolerated(1)	-	NULL
CUL7	9820	genome.wustl.edu	37	6	43017747	43017747	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014780.4	-1	reviewed	p.D508A	0.995	53	0%	74	24.3%	14	28.5%	benign(0.244)	deleterious(0.01)	neutral(0.430)	NULL
CUL9	23113	genome.wustl.edu	37	6	43163924	43163924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015089.2	+1	validated	p.D836N	1.000	59	0%	72	27.8%	7	28.5%	possibly_damaging(0.833)	tolerated(0.12)	deleterious(0.578)	superfamily_ARM repeat
CRIP3	401262	genome.wustl.edu	37	6	43274218	43274218	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206922.2	-1	validated	p.S122	0.001	91	0%	141	31.2%	0	-	-	-	-	superfamily_SSF57716
ZNF318	24149	genome.wustl.edu	37	6	43306272	43306272	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014345.2	-1	validated	p.E1822*	0.031	207	0%	160	31.9%	17	47%	-	-	-	NULL
ZNF318	24149	genome.wustl.edu	37	6	43307083	43307083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014345.2	-1	validated	p.K1551N	1.000	57	0%	34	35.3%	16	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43310499	43310499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014345.2	-1	validated	p.G1064D	1.000	180	0%	112	30.4%	5	80%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers
ZNF318	24149	genome.wustl.edu	37	6	43324955	43324955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014345.2	-1	validated	p.S366Y	1.000	183	0%	120	30.8%	14	14.2%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
DLK2	65989	genome.wustl.edu	37	6	43418727	43418727	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430324	-1	known	p.S140L	0.876	36	0%	61	24.6%	2	50%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
DLK2	65989	genome.wustl.edu	37	6	43420753	43420753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023932.2	-1	validated	p.F87L	1.000	28	0%	70	22.9%	0	-	benign(0.088)	tolerated(0.78)	neutral(0.007)	HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
TJAP1	93643	genome.wustl.edu	37	6	43473312	43473312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080604.2	+1	reviewed	p.E455K	0.008	40	0%	43	34.9%	30	50%	benign(0.01)	tolerated(0.74)	neutral(0.002)	NULL
TMEM63B	55362	genome.wustl.edu	37	6	44114612	44114612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018426.1	+1	validated	p.E271K	1.000	56	0%	93	30.1%	55	36.3%	benign(0.119)	tolerated(0.08)	neutral(0.309)	NULL
HSP90AB1	3326	genome.wustl.edu	37	6	44218174	44218174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007355.2	+1	provisional	p.K265N	1.000	107	0%	221	29.9%	821	35.9%	benign(0.299)	deleterious(0.02)	deleterious(0.476)	HMMPfam_HSP90
TCTE1	202500	genome.wustl.edu	37	6	44250280	44250280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182539.3	-1	validated	p.R288Q	0.644	114	0%	139	36%	1	100%	possibly_damaging(0.723)	tolerated(0.14)	deleterious(0.512)	superfamily_SSF52047
CDC5L	988	genome.wustl.edu	37	6	44371595	44371595	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001253.2	+1	reviewed	p.E197*	1.000	69	0%	53	26.4%	4	0%	-	-	-	NULL
CDC5L	988	genome.wustl.edu	37	6	44413445	44413445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001253.2	+1	reviewed	p.K715N	1.000	114	0%	35	42.9%	29	75.8%	benign(0.036)	deleterious(0.01)	neutral(0.408)	NULL
CDC5L	988	genome.wustl.edu	37	6	44414387	44414387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001253.2	+1	reviewed	p.E783G	1.000	167	0%	63	38.1%	23	78.2%	benign(0.082)	tolerated(0.13)	neutral(0.259)	NULL
SUPT3H	8464	genome.wustl.edu	37	6	44921050	44921050	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181356.1	-1	provisional	p.A277	1.000	121	0%	143	23.8%	20	45%	-	-	-	NULL
TDRD6	221400	genome.wustl.edu	37	6	46658613	46658613	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010870.2	+1	validated	p.K916N	0.000	50	0%	76	31.6%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
PLA2G7	7941	genome.wustl.edu	37	6	46690530	46690530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005084.3	-1	reviewed	p.M33I	0.000	89	1.1%	73	24.7%	5	0%	benign(0)	tolerated(1)	-	NULL
GPR116	221395	genome.wustl.edu	37	6	46827148	46827148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098518.1	-1	validated	p.R831I	0.084	59	0%	56	23.2%	6	0%	probably_damaging(0.986)	tolerated(0.08)	deleterious(0.734)	NULL
GPR116	221395	genome.wustl.edu	37	6	46874461	46874461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098518.1	-1	validated	p.F13L	0.000	200	0%	101	28.7%	2	0%	benign(0)	tolerated(1)	-	NULL
GPR110	266977	genome.wustl.edu	37	6	46977607	46977607	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153840.2	-1	validated	p.F522V	0.975	95	0%	27	22.2%	0	-	benign(0.235)	deleterious(0)	neutral(0.468)	NULL
GPR110	266977	genome.wustl.edu	37	6	46993631	46993631	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153840.2	-1	validated	p.S79*	0.000	145	0%	78	26.9%	0	-	-	-	-	NULL
CD2AP	23607	genome.wustl.edu	37	6	47567068	47567068	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012120.2	+1	reviewed	p.K436Q	1.000	69	0%	49	24.5%	24	45.8%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
GPR111	222611	genome.wustl.edu	37	6	47649422	47649422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153839.6	+1	validated	p.R308I	0.001	103	0%	45	35.6%	0	-	possibly_damaging(0.749)	deleterious(0.03)	deleterious(0.639)	NULL
GPR115	221393	genome.wustl.edu	37	6	47678474	47678474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153838.3	+1	validated	p.K51I	0.998	93	0%	42	28.6%	0	-	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
PTCHD4	442213	genome.wustl.edu	37	6	47846815	47846815	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013732.3	-1	validated	p.R572*	0.998	93	0%	55	25.5%	0	-	-	-	-	HMMPfam_Patched
PTCHD4	442213	genome.wustl.edu	37	6	47846936	47846936	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013732.3	-1	validated	p.V531	1.000	90	0%	45	17.8%	0	-	-	-	-	HMMPfam_Patched
PTCHD4	442213	genome.wustl.edu	37	6	47847482	47847482	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013732.3	-1	validated	p.V349	1.000	92	0%	45	15.6%	0	-	-	-	-	HMMPfam_Patched,superfamily_SSF82866
PTCHD4	442213	genome.wustl.edu	37	6	47976620	47976620	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000398738	-1	known	p.L219I	1.000	95	0%	38	34.2%	0	-	-	-	-	NULL
CENPQ	55166	genome.wustl.edu	37	6	49459913	49459913	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018132.3	+1	validated	p.I244	0.954	159	0%	123	34.1%	4	25%	-	-	-	NULL
GLYATL3	389396	genome.wustl.edu	37	6	49494561	49494561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010904.1	+1	validated	p.F267L	0.999	65	0%	32	34.4%	3	66.6%	benign(0.002)	tolerated(0.69)	neutral(0.002)	HMMPfam_Gly_acyl_tr_C
CRISP2	7180	genome.wustl.edu	37	6	49666126	49666126	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142407.1	-1	validated	p.V122	0.005	98	0%	67	35.8%	0	-	-	-	-	HMMSmart_SM00198,HMMPfam_SCP,superfamily_PR-1-like
CRISP1	167	genome.wustl.edu	37	6	49803147	49803147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001131.2	-1	reviewed	p.C211Y	0.312	184	0%	151	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Crisp
TFAP2B	7021	genome.wustl.edu	37	6	50786658	50786658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003221.3	+1	reviewed	p.E18D	1.000	76	0%	179	25.1%	0	-	benign(0.029)	tolerated(1)	neutral(0.002)	NULL
TFAP2B	7021	genome.wustl.edu	37	6	50807910	50807910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003221.3	+1	reviewed	p.E328K	1.000	80	0%	154	26%	11	81.8%	possibly_damaging(0.945)	deleterious(0.03)	deleterious(0.754)	HMMPfam_TF_AP-2
PKHD1	5314	genome.wustl.edu	37	6	51491798	51491798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138694.3	-1	reviewed	p.E3928K	0.996	411	0%	153	34.6%	5	80%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51491906	51491906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138694.3	-1	reviewed	p.P3892S	0.967	452	0%	164	29.3%	1	100%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51524180	51524180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138694.3	-1	reviewed	p.E3582K	0.833	99	0%	37	27%	0	-	possibly_damaging(0.442)	tolerated(0.45)	neutral(0.157)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51619636	51619636	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138694.3	-1	reviewed	p.E2915*	1.000	162	0%	78	33.3%	1	0%	-	-	-	NULL
MCM3	4172	genome.wustl.edu	37	6	52129513	52129513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002388.3	-1	reviewed	p.R767H	0.444	72	0%	65	24.6%	242	39.2%	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
MCM3	4172	genome.wustl.edu	37	6	52131451	52131451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002388.3	-1	reviewed	p.D706N	1.000	120	0%	74	27%	240	39.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TRAM2	9697	genome.wustl.edu	37	6	52368064	52368064	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012288.3	-1	reviewed	p.Y348	1.000	180	0%	169	26.6%	9	11.1%	-	-	-	NULL
GCLC	2729	genome.wustl.edu	37	6	53373430	53373430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001498.2	-1	reviewed	p.S303Y	1.000	101	0%	102	36.3%	50	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCS,superfamily_Glutamine synthetase/guanido kinase
GCLC	2729	genome.wustl.edu	37	6	53409386	53409386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001498.2	-1	reviewed	p.D20N	1.000	40	0%	52	36.5%	40	27.5%	benign(0.01)	tolerated(0.13)	neutral(0.253)	NULL
FAM83B	222584	genome.wustl.edu	37	6	54792313	54792313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010872.1	+1	validated	p.R206Q	1.000	116	0%	39	25.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1669,superfamily_SSF56024
FAM83B	222584	genome.wustl.edu	37	6	54806653	54806653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010872.1	+1	validated	p.E962*	1.000	85	0%	44	31.8%	0	-	-	-	-	NULL
HCRTR2	3062	genome.wustl.edu	37	6	55145214	55145214	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001526.3	+1	reviewed	p.A359	0.989	302	0%	165	20%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
BMP5	653	genome.wustl.edu	37	6	55739539	55739539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021073.2	-1	reviewed	p.R42I	1.000	139	0%	54	31.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGFb_propeptide
DST	667	genome.wustl.edu	37	6	56371291	56371291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015548.4	-1	reviewed	p.K3849E	0.948	167	0%	52	28.8%	180	45%	benign(0.023)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56417403	56417403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015548.4	-1	reviewed	p.S2773Y	1.000	105	0%	53	28.3%	0	-	probably_damaging(0.998)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56438544	56438544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015548.4	-1	reviewed	p.S1767Y	0.997	129	0%	111	26.1%	1	100%	probably_damaging(0.991)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56468781	56468781	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000370769	-1	known	p.E3338*	0.012	163	0%	62	27.4%	0	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56473288	56473288	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000370769	-1	known	p.D1835	1.000	97	0%	49	12.2%	0	-	-	-	-	HMMSmart_SM00250,superfamily_Plakin repeat
DST	667	genome.wustl.edu	37	6	56479176	56479176	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015548.4	-1	reviewed	p.K1142T	0.997	334	0%	201	27.9%	0	-	benign(0.389)	deleterious(0)	deleterious(0.569)	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56484068	56484068	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001723.5	-1	reviewed	p.L1588	0.000	189	0%	154	26%	0	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56504319	56504319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015548.4	-1	reviewed	p.E393*	1.000	127	0%	101	26.7%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56564534	56564534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000370769	-1	known	p.V111M	1.000	154	0%	90	16.7%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
DST	667	genome.wustl.edu	37	6	56819310	56819310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000281662	-1	known	p.A32V	1.000	31	0%	70	31.4%	1	0%	-	-	-	NULL
KIAA1586	57691	genome.wustl.edu	37	6	56918608	56918608	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020931.2	+1	validated	p.I437M	1.000	50	0%	43	41.9%	0	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
KIAA1586	57691	genome.wustl.edu	37	6	56919661	56919661	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020931.2	+1	validated	p.*788Y	0.000	57	0%	65	38.5%	4	25%	-	-	-	NULL
RAB23	51715	genome.wustl.edu	37	6	57072498	57072498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016277.3	-1	reviewed	p.D57N	1.000	202	0%	110	31.8%	14	28.5%	benign(0.31)	deleterious(0.03)	neutral(0.461)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAB23	51715	genome.wustl.edu	37	6	57075154	57075154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016277.3	-1	reviewed	p.A9T	1.000	266	0%	176	23.3%	30	30%	benign(0.117)	tolerated(0.09)	neutral(0.306)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LGSN	51557	genome.wustl.edu	37	6	63995556	63995556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016571.2	-1	reviewed	p.R89Q	1.000	163	0%	124	25.8%	1	0%	possibly_damaging(0.918)	tolerated(0.23)	neutral(0.410)	superfamily_Glutamine synthetase N-terminal domain
LGSN	51557	genome.wustl.edu	37	6	64004910	64004910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016571.2	-1	reviewed	p.S24I	0.060	302	0%	157	34.4%	0	-	benign(0.202)	tolerated(0.06)	neutral(0.342)	NULL
PHF3	23469	genome.wustl.edu	37	6	64394511	64394511	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015153.2	+1	provisional	p.Q296H	0.003	107	0%	162	34.6%	5	80%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
PHF3	23469	genome.wustl.edu	37	6	64395141	64395141	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015153.2	+1	provisional	p.P506	0.000	37	0%	45	26.7%	10	60%	-	-	-	NULL
PHF3	23469	genome.wustl.edu	37	6	64423420	64423420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015153.2	+1	provisional	p.R1979Q	0.982	117	0%	133	30.1%	81	34.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EYS	346007	genome.wustl.edu	37	6	65300795	65300796	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142800.1	-1	reviewed	p.L1655fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65301248	65301248	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142800.1	-1	reviewed	p.Q1504	1.000	63	0%	40	10%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
EYS	346007	genome.wustl.edu	37	6	65622593	65622593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142800.1	-1	reviewed	p.E809*	1.000	124	0%	78	23.1%	0	-	-	-	-	HMMSmart_SM00179,superfamily_EGF/Laminin
EYS	346007	genome.wustl.edu	37	6	65767606	65767606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142800.1	-1	reviewed	p.I680V	0.925	160	0%	55	34.5%	0	-	unknown(0)	-	-	superfamily_EGF/Laminin
EYS	346007	genome.wustl.edu	37	6	66044988	66044988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142800.1	-1	reviewed	p.R551W	0.000	200	0.5%	70	32.9%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
EYS	346007	genome.wustl.edu	37	6	66112384	66112384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142800.1	-1	reviewed	p.D391Y	0.000	71	0%	21	19%	0	-	possibly_damaging(0.922)	deleterious(0.04)	deleterious(0.720)	HMMSmart_SM00181,superfamily_EGF/Laminin
BAI3	577	genome.wustl.edu	37	6	69348887	69348887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001704.2	+1	reviewed	p.S107Y	1.000	66	0%	106	31.1%	0	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
BAI3	577	genome.wustl.edu	37	6	69653764	69653764	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001704.2	+1	reviewed	p.S358*	1.000	159	0%	114	36.8%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
BAI3	577	genome.wustl.edu	37	6	69703748	69703748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001704.2	+1	reviewed	p.R608I	1.000	153	0%	80	26.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
LMBRD1	55788	genome.wustl.edu	37	6	70410688	70410688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018368.3	-1	reviewed	p.R386Q	1.000	73	1.4%	40	45%	26	42.3%	unknown(0)	deleterious(0.05)	-	HMMPfam_LMBR1
COL19A1	1310	genome.wustl.edu	37	6	70637859	70637859	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001858.4	+1	reviewed	p.R109*	0.539	166	0.6%	60	35%	0	-	-	-	-	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL19A1	1310	genome.wustl.edu	37	6	70646744	70646744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001858.4	+1	reviewed	p.S272Y	0.006	127	0%	50	12%	0	-	unknown(0)	tolerated(0.2)	-	NULL
COL9A1	1297	genome.wustl.edu	37	6	70993472	70993472	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001851.4	-1	reviewed	p.E250*	1.000	113	0%	227	26.9%	1	0%	-	-	-	superfamily_ConA_like_lec_gl
COL9A1	1297	genome.wustl.edu	37	6	71004213	71004213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001851.4	-1	reviewed	p.R118Q	1.000	117	0%	67	32.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
COL9A1	1297	genome.wustl.edu	37	6	71009839	71009839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001851.4	-1	reviewed	p.A69V	1.000	87	0%	71	32.4%	0	-	possibly_damaging(0.623)	tolerated(0.91)	neutral(0.217)	HMMSmart_TSPN
FAM135A	57579	genome.wustl.edu	37	6	71234488	71234488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000418814	+1	known	p.Q567H	1.000	50	0%	22	22.7%	0	-	benign(0.092)	deleterious(0.01)	neutral(0.413)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71236057	71236057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105531.2	+1	validated	p.Q894H	1.000	99	0%	91	29.7%	5	0%	possibly_damaging(0.942)	tolerated(0.11)	deleterious(0.659)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71269595	71269595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105531.2	+1	validated	p.L1311M	1.000	157	0%	131	29.8%	7	14.2%	possibly_damaging(0.898)	deleterious(0.03)	deleterious(0.719)	NULL
OGFRL1	79627	genome.wustl.edu	37	6	72006441	72006441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024576.3	+1	validated	p.F205I	1.000	125	0%	97	14.4%	12	16.6%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_OGFr_N
RIMS1	22999	genome.wustl.edu	37	6	72889303	72889303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014989.4	+1	reviewed	p.R166Q	1.000	43	0%	66	16.7%	0	-	possibly_damaging(0.855)	tolerated(0.09)	deleterious(0.627)	superfamily_FYVE/PHD zinc finger
RIMS1	22999	genome.wustl.edu	37	6	72889314	72889314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014989.4	+1	reviewed	p.E170K	1.000	46	0%	66	28.8%	0	-	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	superfamily_FYVE/PHD zinc finger
RIMS1	22999	genome.wustl.edu	37	6	72892167	72892167	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014989.4	+1	reviewed	p.P331	0.012	36	0%	58	31%	0	-	-	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	72960160	72960160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014989.4	+1	reviewed	p.R790I	1.000	77	0%	29	27.6%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RIMS1	22999	genome.wustl.edu	37	6	72960715	72960715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014989.4	+1	reviewed	p.D822Y	1.000	203	0%	74	20.3%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RIMS1	22999	genome.wustl.edu	37	6	72967974	72967974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014989.4	+1	reviewed	p.P973S	1.000	54	0%	19	26.3%	0	-	possibly_damaging(0.854)	deleterious(0.02)	deleterious(0.712)	NULL
DPPA5	340168	genome.wustl.edu	37	6	74063740	74063740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001025290.1	-1	provisional	p.R43Q	0.508	38	0%	68	33.8%	0	-	benign(0.122)	tolerated(0.11)	neutral(0.282)	superfamily_SSF54791
DDX43	55510	genome.wustl.edu	37	6	74107414	74107414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018665.2	+1	reviewed	p.R85C	1.000	104	0%	176	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
DDX43	55510	genome.wustl.edu	37	6	74115412	74115412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018665.2	+1	reviewed	p.F221V	1.000	139	0%	216	32.4%	0	-	benign(0.34)	-	-	superfamily_SSF52540
CD109	135228	genome.wustl.edu	37	6	74440163	74440163	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133493.3	+1	reviewed	p.E125*	1.000	121	0%	87	28.7%	4	25%	-	-	-	HMMPfam_A2M_N
CD109	135228	genome.wustl.edu	37	6	74472508	74472508	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133493.3	+1	reviewed	p.K300N	0.985	202	0%	163	34.4%	0	-	benign(0.221)	tolerated(0.06)	neutral(0.345)	NULL
CD109	135228	genome.wustl.edu	37	6	74502473	74502473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133493.3	+1	reviewed	p.K942N	0.116	110	0%	57	24.6%	2	100%	benign(0.124)	tolerated(0.15)	neutral(0.251)	superfamily_Terpenoid cyclases/Protein prenyltransferases
FILIP1	27145	genome.wustl.edu	37	6	76024467	76024467	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015687.2	-1	validated	p.E361*	1.000	264	0%	212	32.5%	6	83.3%	-	-	-	HMMPfam_CortBP2
SENP6	26054	genome.wustl.edu	37	6	76419278	76419278	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015571.2	+1	validated	p.E918*	0.988	122	0%	81	27.2%	39	38.4%	-	-	-	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
SENP6	26054	genome.wustl.edu	37	6	76423432	76423432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015571.2	+1	validated	p.R1007I	1.000	161	0%	92	34.8%	15	26.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Peptidase_C48,superfamily_Cysteine proteinases
MYO6	4646	genome.wustl.edu	37	6	76538280	76538280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004999.3	+1	reviewed	p.A71S	1.000	153	0%	110	35.5%	11	36.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TTK	7272	genome.wustl.edu	37	6	80744725	80744725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003318.4	+1	reviewed	p.K546N	1.000	91	0%	19	42.1%	8	50%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
IBTK	25998	genome.wustl.edu	37	6	82924423	82924423	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015525.2	-1	reviewed	p.F575	0.998	67	0%	51	39.2%	5	60%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
IBTK	25998	genome.wustl.edu	37	6	82943942	82943942	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015525.2	-1	reviewed	p.E118*	1.000	106	0%	103	24.3%	2	0%	-	-	-	superfamily_Ankyrin repeat
TPBG	7162	genome.wustl.edu	37	6	83075528	83075528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006670.4	+1	reviewed	p.L284I	0.986	47	0%	111	14.4%	20	0%	possibly_damaging(0.696)	tolerated(0.15)	deleterious(0.490)	superfamily_L domain-like
UBE3D	90025	genome.wustl.edu	37	6	83728755	83728755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198920.1	-1	provisional	p.S316Y	0.067	197	0%	58	34.5%	5	20%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_DUF2351
RWDD2A	112611	genome.wustl.edu	37	6	83905938	83905938	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033411.3	+1	validated	p.E276*	1.000	50	0%	76	30.3%	5	80%	-	-	-	HMMPfam_DUF1115
SNAP91	9892	genome.wustl.edu	37	6	84303223	84303223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014841.2	-1	validated	p.A557D	1.000	102	0%	145	33.1%	1	100%	possibly_damaging(0.768)	deleterious(0.02)	deleterious(0.668)	NULL
SNAP91	9892	genome.wustl.edu	37	6	84311154	84311154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014841.2	-1	validated	p.S387Y	0.997	187	0%	141	34.8%	0	-	benign(0.053)	deleterious(0.02)	neutral(0.387)	NULL
SNAP91	9892	genome.wustl.edu	37	6	84372116	84372116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014841.2	-1	validated	p.R100I	1.000	86	0%	46	41.3%	0	-	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
SNAP91	9892	genome.wustl.edu	37	6	84375170	84375170	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014841.2	-1	validated	p.V87	0.991	138	0%	84	33.3%	0	-	-	-	-	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
KIAA1009	22832	genome.wustl.edu	37	6	84859377	84859377	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014895.2	-1	validated	p.S1225	0.996	210	0%	53	35.8%	9	77.7%	-	-	-	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84862665	84862665	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014895.2	-1	validated	p.F1076	0.765	263	0%	201	34.3%	10	70%	-	-	-	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84925056	84925056	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014895.2	-1	validated	p.S149	0.927	227	0.4%	111	26.1%	4	25%	-	-	-	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84930790	84930790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014895.2	-1	validated	p.D53Y	1.000	364	0%	166	28.3%	3	33.3%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	NULL
NT5E	4907	genome.wustl.edu	37	6	86176976	86176976	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002526.2	+1	validated	p.E180*	1.000	243	0%	94	30.9%	11	27.2%	-	-	-	HMMPfam_Metallophos,superfamily_SSF56300
SNX14	57231	genome.wustl.edu	37	6	86227560	86227560	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153816.3	-1	reviewed	p.F728V	1.000	313	0%	205	30.2%	34	38.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
SNX14	57231	genome.wustl.edu	37	6	86227751	86227751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153816.3	-1	reviewed	p.S708Y	1.000	154	0%	105	27.6%	13	46.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87943133	87943133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015021.1	+1	validated	p.A210V	1.000	134	0%	149	40.3%	1	0%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87966270	87966270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015021.1	+1	validated	p.E975*	0.016	59	0%	34	26.5%	15	46.6%	-	-	-	NULL
RARS2	57038	genome.wustl.edu	37	6	88234361	88234361	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020320.3	-1	reviewed	p.T296	0.875	79	0%	63	28.6%	44	34%	-	-	-	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
ORC3	23595	genome.wustl.edu	37	6	88331150	88331150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181837.1	+1	reviewed	p.N356H	0.984	157	0%	110	36.4%	10	50%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
SPACA1	81833	genome.wustl.edu	37	6	88763687	88763687	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030960.2	+1	reviewed	p.E78*	1.000	115	0%	199	27.1%	0	-	-	-	-	NULL
CNR1	1268	genome.wustl.edu	37	6	88854721	88854721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016083.4	-1	reviewed	p.E91D	0.819	81	0%	75	37.3%	0	-	-	-	-	NULL
SRSF12	135295	genome.wustl.edu	37	6	89815233	89815233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080743.4	-1	validated	p.D63Y	1.000	152	0%	102	29.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
SRSF12	135295	genome.wustl.edu	37	6	89816949	89816949	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080743.4	-1	validated	p.R32*	1.000	174	0%	142	35.2%	1	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
GABRR1	2569	genome.wustl.edu	37	6	89890095	89890095	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002042.3	-1	reviewed	p.F354	0.998	117	0%	51	27.5%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
RRAGD	58528	genome.wustl.edu	37	6	90077848	90077848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021244.4	-1	validated	p.S377Y	0.410	252	0%	148	41.2%	7	28.5%	benign(0.257)	deleterious(0.01)	neutral(0.432)	NULL
RRAGD	58528	genome.wustl.edu	37	6	90089928	90089928	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021244.4	-1	validated	p.N201	0.629	239	0.4%	142	33.8%	7	14.2%	-	-	-	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90393038	90393038	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014611.1	-1	provisional	p.K3972T	1.000	76	0%	35	51.4%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MDN1	23195	genome.wustl.edu	37	6	90466102	90466102	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014611.1	-1	provisional	p.E904*	1.000	223	0%	100	27%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
MDN1	23195	genome.wustl.edu	37	6	90468641	90468641	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014611.1	-1	provisional	p.I833	1.000	159	0%	106	26.4%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
GJA10	84694	genome.wustl.edu	37	6	90604304	90604304	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032602.1	+1	validated	p.V39	0.979	125	0%	117	28.2%	0	-	-	-	-	HMMPfam_Connexin
MAP3K7	6885	genome.wustl.edu	37	6	91261841	91261841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145331.1	-1	reviewed	p.R265H	1.000	242	0%	179	31.8%	18	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FUT9	10690	genome.wustl.edu	37	6	96651434	96651434	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006581.3	+1	validated	p.N135H	1.000	100	0%	27	18.5%	0	-	possibly_damaging(0.937)	tolerated(0.39)	neutral(0.399)	HMMPfam_Glyco_transf_10
FHL5	9457	genome.wustl.edu	37	6	97063606	97063606	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020482.4	+1	reviewed	p.I271	1.000	116	0%	80	41.2%	1	0%	-	-	-	HMMPfam_LIM,HMMSmart_LIM
FBXL4	26235	genome.wustl.edu	37	6	99323521	99323521	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012160.3	-1	reviewed	p.N491T	1.000	41	0%	14	28.6%	15	40%	benign(0.013)	tolerated(0.98)	neutral(0.001)	HMMSmart_LRR_CC,superfamily_SSF52047
PNISR	25957	genome.wustl.edu	37	6	99849021	99849021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015491.1	-1	validated	p.E605*	1.000	172	0%	163	29.4%	57	47.3%	-	-	-	NULL
PNISR	25957	genome.wustl.edu	37	6	99852519	99852519	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015491.1	-1	validated	p.I354M	1.000	234	0%	164	31.1%	78	61.5%	benign(0.278)	tolerated(0.19)	neutral(0.080)	NULL
USP45	85015	genome.wustl.edu	37	6	99883615	99883615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080481.1	-1	provisional	p.L808I	1.000	120	0%	75	16%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP45	85015	genome.wustl.edu	37	6	99936593	99936593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080481.1	-1	provisional	p.N194K	1.000	134	0%	160	12.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases
MCHR2	84539	genome.wustl.edu	37	6	100368969	100368969	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040179.1	-1	validated	p.L290	1.000	187	0%	97	41.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MCHR2	84539	genome.wustl.edu	37	6	100390853	100390853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040179.1	-1	validated	p.D187N	1.000	90	0%	45	17.8%	0	-	benign(0.014)	tolerated(0.49)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
ASCC3	10973	genome.wustl.edu	37	6	101053536	101053536	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006828.2	-1	validated	p.F1695	1.000	40	0%	15	46.7%	18	50%	-	-	-	superfamily_SSF52540
ASCC3	10973	genome.wustl.edu	37	6	101075555	101075555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006828.2	-1	validated	p.R1518H	1.000	88	0%	45	8.9%	23	13%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_DEXDc,superfamily_SSF52540
ASCC3	10973	genome.wustl.edu	37	6	101095148	101095148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006828.2	-1	validated	p.K1144N	1.000	233	0%	153	29.4%	10	50%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Sec63,HMMSmart_SEC63
ASCC3	10973	genome.wustl.edu	37	6	101296418	101296418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006828.2	-1	validated	p.R136Q	0.997	93	0%	18	22.2%	7	14.2%	benign(0.07)	tolerated(0.65)	neutral(0.008)	NULL
ASCC3	10973	genome.wustl.edu	37	6	101296563	101296563	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006828.2	-1	validated	p.E88*	1.000	82	0%	47	12.8%	2	0%	-	-	-	NULL
GRIK2	2898	genome.wustl.edu	37	6	102516355	102516355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021956.4	+1	reviewed	p.R899I	1.000	111	0%	40	32.5%	6	66.6%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
HACE1	57531	genome.wustl.edu	37	6	105232346	105232346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020771.3	-1	validated	p.R475H	1.000	56	0%	29	24.1%	8	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ATG5	9474	genome.wustl.edu	37	6	106740903	106740903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004849.2	-1	validated	p.K105N	1.000	104	0%	62	30.6%	23	0%	benign(0.007)	tolerated(0.41)	neutral(0.015)	HMMPfam_APG5
ATG5	9474	genome.wustl.edu	37	6	106756278	106756278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004849.2	-1	validated	p.S66N	1.000	279	0%	136	26.5%	31	19.3%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
AIM1	202	genome.wustl.edu	37	6	107006385	107006385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001624.2	+1	validated	p.L1506I	1.000	93	0%	48	18.8%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
AIM1	202	genome.wustl.edu	37	6	107008712	107008712	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001624.2	+1	validated	p.R1556*	0.273	159	0%	99	27.3%	5	0%	-	-	-	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
SOBP	55084	genome.wustl.edu	37	6	107908317	107908317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018013.3	+1	validated	p.P203S	1.000	89	0%	37	27%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOBP	55084	genome.wustl.edu	37	6	107954828	107954828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018013.3	+1	validated	p.M260I	1.000	83	0%	150	33.3%	4	0%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	NULL
NR2E1	7101	genome.wustl.edu	37	6	108496096	108496096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003269.3	+1	validated	p.K76N	1.000	81	0%	174	30.5%	0	-	benign(0.287)	deleterious(0)	deleterious(0.533)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ARMC2	84071	genome.wustl.edu	37	6	109232151	109232151	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032131.4	+1	validated	p.K358T	1.000	106	0%	74	10.8%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_ARM-type_fold
ARMC2	84071	genome.wustl.edu	37	6	109233677	109233677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032131.4	+1	validated	p.I422M	0.813	137	0%	63	34.9%	0	-	benign(0.055)	tolerated(0.25)	neutral(0.041)	superfamily_ARM-type_fold
ARMC2	84071	genome.wustl.edu	37	6	109286284	109286284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032131.4	+1	validated	p.S796L	0.064	154	0%	94	25.5%	2	50%	benign(0.086)	tolerated(0.72)	neutral(0.008)	superfamily_ARM-type_fold
SESN1	27244	genome.wustl.edu	37	6	109309749	109309749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014454.1	-1	provisional	p.E522D	1.000	93	0%	36	27.8%	6	0%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_PA26
SESN1	27244	genome.wustl.edu	37	6	109315802	109315802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014454.1	-1	provisional	p.S328F	1.000	138	0%	89	28.1%	9	33.3%	benign(0.196)	deleterious(0.01)	neutral(0.424)	HMMPfam_PA26
CEP57L1	285753	genome.wustl.edu	37	6	109471401	109471401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083535.1	+1	validated	p.L141I	0.999	96	0%	57	28.1%	6	50%	possibly_damaging(0.736)	tolerated(0.08)	deleterious(0.569)	HMMPfam_DUF1167
SMPD2	6610	genome.wustl.edu	37	6	109764897	109764897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003080.2	+1	validated	p.A354V	0.000	156	0%	231	28.6%	11	36.3%	probably_damaging(0.998)	tolerated(0.28)	deleterious(0.506)	NULL
ZBTB24	9841	genome.wustl.edu	37	6	109796613	109796613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014797.2	-1	validated	p.R426Q	0.991	197	0%	214	32.7%	7	42.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AKD1	221264	genome.wustl.edu	37	6	109835528	109835528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000424296	-1	known	p.F472C	1.000	303	0%	145	26.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKD1	221264	genome.wustl.edu	37	6	109894787	109894787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145128.2	-1	provisional	p.E734D	0.000	141	0%	76	26.3%	1	0%	possibly_damaging(0.819)	tolerated(0.09)	deleterious(0.606)	superfamily_P-loop containing nucleoside triphosphate hydrolases
AKD1	221264	genome.wustl.edu	37	6	109931708	109931708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145128.2	-1	provisional	p.E568K	0.023	207	0%	79	29.1%	0	-	benign(0.081)	deleterious(0)	neutral(0.451)	superfamily_P-loop containing nucleoside triphosphate hydrolases
AKD1	221264	genome.wustl.edu	37	6	109933288	109933288	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145128.2	-1	provisional	p.E540*	0.567	138	0%	67	34.3%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
FIG4	9896	genome.wustl.edu	37	6	110113853	110113853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014845.5	+1	reviewed	p.F815L	0.997	93	0%	123	26%	31	35.4%	benign(0)	tolerated(1)	-	NULL
SLC16A10	117247	genome.wustl.edu	37	6	111527807	111527807	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018593.4	+1	validated	p.N319H	1.000	193	0%	95	31.6%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
REV3L	5980	genome.wustl.edu	37	6	111697097	111697097	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002912.3	-1	validated	p.L821V	0.997	170	0%	87	33.3%	4	75%	benign(0.003)	tolerated(0.33)	neutral(0.024)	superfamily_Ribonuclease H-like
FYN	2534	genome.wustl.edu	37	6	112021364	112021364	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002037.3	-1	reviewed	p.E269*	1.000	149	0%	112	39.3%	8	25%	-	-	-	superfamily_Protein kinase-like (PK-like),superfamily_SH2 domain
WISP3	8838	genome.wustl.edu	37	6	112386096	112386096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198239.1	+1	reviewed	p.G180D	0.000	160	0%	81	9.9%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
TUBE1	51175	genome.wustl.edu	37	6	112400827	112400827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000368657	-1	known	p.F153V	0.000	116	0%	107	24.3%	0	-	unknown(0)	-	-	NULL
TUBE1	51175	genome.wustl.edu	37	6	112400936	112400936	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016262.4	-1	reviewed	p.F116	1.000	106	0.9%	101	26.7%	6	16.6%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
LAMA4	3910	genome.wustl.edu	37	6	112493969	112493969	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105206.1	-1	reviewed	p.N465	0.967	57	0%	31	25.8%	4	0%	-	-	-	HMMPfam_Laminin_I
FRK	2444	genome.wustl.edu	37	6	116264183	116264183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002031.2	-1	reviewed	p.G436S	1.000	101	0%	35	40%	3	66.6%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
COL10A1	1300	genome.wustl.edu	37	6	116442821	116442821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000493.3	-1	reviewed	p.S153Y	0.967	98	0%	31	45.2%	0	-	unknown(0)	deleterious(0.04)	-	NULL
DSE	29940	genome.wustl.edu	37	6	116752174	116752174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080976.1	+1	reviewed	p.S243Y	1.000	151	0%	148	30.4%	8	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
DSE	29940	genome.wustl.edu	37	6	116754709	116754709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080976.1	+1	reviewed	p.L372I	1.000	66	0%	58	36.2%	3	0%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
DSE	29940	genome.wustl.edu	37	6	116757876	116757876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080976.1	+1	reviewed	p.F749V	1.000	61	0%	27	29.6%	15	6.6%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
FAM26F	441168	genome.wustl.edu	37	6	116784863	116784863	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010919.1	+1	predicted	p.L315	0.000	72	0%	115	36.5%	10	0%	-	-	-	NULL
RSPH4A	345895	genome.wustl.edu	37	6	116943930	116943930	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010892.2	+1	reviewed	e2-1	1.000	55	0%	30	33.3%	0	-	-	-	-	-
ZUFSP	221302	genome.wustl.edu	37	6	116967088	116967088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145062.2	-1	validated	p.R493Q	1.000	258	0%	119	35.3%	11	54.5%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	HMMPfam_Peptidase_C78
ZUFSP	221302	genome.wustl.edu	37	6	116988082	116988082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145062.2	-1	validated	p.L92I	0.192	268	0%	235	35.3%	6	66.6%	benign(0.173)	tolerated(0.41)	neutral(0.031)	NULL
GPRC6A	222545	genome.wustl.edu	37	6	117113716	117113716	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148963.2	-1	validated	p.I790M	0.996	99	0%	28	25%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_3
GPRC6A	222545	genome.wustl.edu	37	6	117130776	117130776	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148963.2	-1	validated	p.E67*	1.000	91	0%	55	36.4%	0	-	-	-	-	superfamily_Periplasmic binding protein-like I
GPRC6A	222545	genome.wustl.edu	37	6	117150119	117150119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148963.2	-1	validated	p.P20S	0.768	151	0%	66	22.7%	0	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
RFX6	222546	genome.wustl.edu	37	6	117248341	117248341	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173560.2	+1	validated	p.S679	0.137	158	0%	83	27.7%	0	-	-	-	-	NULL
RFX6	222546	genome.wustl.edu	37	6	117248402	117248402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173560.2	+1	validated	p.S700R	0.041	119	0%	95	33.7%	0	-	possibly_damaging(0.516)	deleterious(0.02)	deleterious(0.556)	NULL
ROS1	6098	genome.wustl.edu	37	6	117609784	117609784	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002944.2	-1	reviewed	p.E2305	1.000	184	0%	79	26.6%	0	-	-	-	-	NULL
ROS1	6098	genome.wustl.edu	37	6	117642533	117642533	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002944.2	-1	reviewed	p.Q1889P	0.045	158	0%	54	24.1%	0	-	benign(0.069)	deleterious(0.05)	neutral(0.350)	NULL
ROS1	6098	genome.wustl.edu	37	6	117647493	117647493	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002944.2	-1	reviewed	p.W1817*	1.000	186	0%	134	14.2%	0	-	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
ROS1	6098	genome.wustl.edu	37	6	117700232	117700232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002944.2	-1	reviewed	p.R863W	1.000	80	0%	111	26.1%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_SSF63825
ROS1	6098	genome.wustl.edu	37	6	117725528	117725528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002944.2	-1	reviewed	p.R118Q	0.959	156	0%	177	33.3%	0	-	probably_damaging(0.989)	tolerated(0.41)	neutral(0.455)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FAM184A	79632	genome.wustl.edu	37	6	119399444	119399444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024581.4	-1	validated	p.S7R	1.000	25	0%	41	31.7%	0	-	possibly_damaging(0.887)	tolerated(0.06)	deleterious(0.669)	NULL
MAN1A1	4121	genome.wustl.edu	37	6	119510929	119510929	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005907.2	-1	reviewed	p.F482	1.000	66	0%	33	42.4%	21	28.5%	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
C6orf170	221322	genome.wustl.edu	37	6	121427285	121427285	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152730.4	-1	validated	p.E1117*	0.007	100	0%	32	31.2%	3	33.3%	-	-	-	NULL
C6orf170	221322	genome.wustl.edu	37	6	121638731	121638731	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152730.4	-1	validated	p.R135	0.003	454	0%	219	31.1%	4	25%	-	-	-	NULL
C6orf170	221322	genome.wustl.edu	37	6	121655463	121655463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152730.4	-1	validated	p.E38D	1.000	59	0%	143	30.1%	4	25%	probably_damaging(0.971)	tolerated(0.8)	neutral(0.413)	NULL
SMPDL3A	10924	genome.wustl.edu	37	6	123130409	123130409	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006714.3	+1	validated	p.Y406*	1.000	90	0%	87	34.5%	4	0%	-	-	-	NULL
TRDN	10345	genome.wustl.edu	37	6	123581763	123581763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006073.2	-1	validated	p.E609*	0.995	151	0%	57	42.1%	0	-	-	-	-	NULL
TRDN	10345	genome.wustl.edu	37	6	123653061	123653061	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006073.2	-1	validated	p.G478	0.005	154	0%	56	28.6%	0	-	-	-	-	NULL
TRDN	10345	genome.wustl.edu	37	6	123759262	123759262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006073.2	-1	validated	p.E333*	1.000	248	0%	133	19.5%	0	-	-	-	-	NULL
TRDN	10345	genome.wustl.edu	37	6	123837340	123837340	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006073.2	-1	validated	p.E166*	0.998	117	0%	43	30.2%	0	-	-	-	-	HMMPfam_Triadin
NKAIN2	154215	genome.wustl.edu	37	6	125112505	125112505	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040214.1	+1	reviewed	p.A165	1.000	266	0%	111	11.7%	0	-	-	-	-	HMMPfam_NKAIN
RNF217	154214	genome.wustl.edu	37	6	125379111	125379111	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152553.2	+1	provisional	p.F88	0.817	147	0%	53	24.5%	2	50%	-	-	-	HMMPfam_IBR,HMMSmart_SM00647,superfamily_RING/U-box
NCOA7	135112	genome.wustl.edu	37	6	126176216	126176216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181782.3	+1	validated	p.V34A	0.001	132	0%	94	29.8%	7	28.5%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
NCOA7	135112	genome.wustl.edu	37	6	126210825	126210825	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181782.3	+1	validated	p.K542T	0.912	39	0%	18	50%	3	33.3%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
LOC728666	728666	genome.wustl.edu	37	6	126965402	126965402	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_015645.3	+1	model	NULL	1.000	17	0%	40	27.5%	87	0%	-	-	-	-
RSPO3	84870	genome.wustl.edu	37	6	127476456	127476456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032784.3	+1	reviewed	p.K169N	1.000	134	0%	87	34.5%	7	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ECHDC1	55862	genome.wustl.edu	37	6	127648140	127648140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000368287	-1	known	p.V124I	0.005	95	0%	81	33.3%	0	-	-	-	-	NULL
KIAA0408	9729	genome.wustl.edu	37	6	127768721	127768721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014702.4	-1	validated	p.S248Y	0.002	125	0%	45	24.4%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
SOGA3	387104	genome.wustl.edu	37	6	127834161	127834161	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012279.2	-1	validated	p.E454*	1.000	342	0%	532	28.6%	0	-	-	-	-	NULL
C6orf58	352999	genome.wustl.edu	37	6	127911363	127911363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010905.1	+1	predicted	p.R269L	0.281	183	0%	178	29.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DUF781
PTPRK	5796	genome.wustl.edu	37	6	128302304	128302304	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135648.1	-1	validated	p.I1229S	1.000	87	0%	63	34.9%	57	52.6%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
LAMA2	3908	genome.wustl.edu	37	6	129724970	129724970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000426.3	+1	reviewed	p.L1911I	1.000	93	0%	46	28.3%	3	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_ConA_like_lec_gl,superfamily_SSF56399
ARHGAP18	93663	genome.wustl.edu	37	6	129921907	129921907	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033515.2	-1	validated	p.P484	0.005	144	0.7%	44	40.9%	12	8.3%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SAMD3	154075	genome.wustl.edu	37	6	130497126	130497126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017373.2	-1	validated	p.R228C	1.000	215	0%	140	28.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM200A	114801	genome.wustl.edu	37	6	130762884	130762884	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052913.2	+1	provisional	p.P439	0.003	82	0%	34	38.2%	27	40.7%	-	-	-	NULL
EPB41L2	2037	genome.wustl.edu	37	6	131216189	131216189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001431.3	-1	validated	p.R436Q	1.000	102	0%	64	26.6%	48	31.2%	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	HMMPfam_FERM_C,superfamily_SSF50729
MED23	9439	genome.wustl.edu	37	6	131919435	131919435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004830.2	-1	reviewed	p.L867I	1.000	93	0%	51	25.5%	24	25%	possibly_damaging(0.643)	tolerated(0.1)	deleterious(0.512)	NULL
OR2A4	79541	genome.wustl.edu	37	6	132022338	132022338	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030908.1	-1	provisional	p.V68	0.167	211	0%	145	11%	3	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CTAGE9	643854	genome.wustl.edu	37	6	132030212	132030212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145659.1	-1	provisional	p.S649Y	0.000	254	0%	298	9.7%	7	0%	probably_damaging(0.993)	tolerated(0.14)	deleterious(0.700)	NULL
CTAGE9	643854	genome.wustl.edu	37	6	132031690	132031690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145659.1	-1	provisional	p.E156D	0.000	305	0%	303	9.2%	0	-	probably_damaging(0.972)	deleterious(0.03)	deleterious(0.778)	NULL
ENPP1	5167	genome.wustl.edu	37	6	132168973	132168973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006208.2	+1	reviewed	p.S100C	1.000	104	0%	134	11.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TAAR2	9287	genome.wustl.edu	37	6	132938920	132938920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033080.1	-1	validated	p.F142C	1.000	78	0%	25	32%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
VNN2	8875	genome.wustl.edu	37	6	133072643	133072643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004665.2	-1	reviewed	p.A281T	0.784	22	0.000	9	0.444	4	0%	benign(0.344)	tolerated(0.37)	neutral(0.128)	superfamily_Ntlse/CNhydtse
VNN2	8875	genome.wustl.edu	37	6	133078911	133078911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004665.2	-1	reviewed	p.P38S	0.996	140	0%	76	32.9%	2	0%	possibly_damaging(0.505)	tolerated(0.23)	neutral(0.211)	superfamily_Ntlse/CNhydtse
ALDH8A1	64577	genome.wustl.edu	37	6	135264963	135264963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022568.2	-1	reviewed	p.D94Y	1.000	33	0%	62	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
HBS1L	10767	genome.wustl.edu	37	6	135287538	135287538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006620.3	-1	reviewed	p.D658Y	1.000	159	0%	114	31.6%	27	48.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
PDE7B	27115	genome.wustl.edu	37	6	136268612	136268612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018945.3	+1	reviewed	p.E11G	1.000	190	0%	93	29%	0	-	possibly_damaging(0.477)	tolerated(0.45)	neutral(0.170)	NULL
PDE7B	27115	genome.wustl.edu	37	6	136502367	136502367	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018945.3	+1	reviewed	p.I317	0.986	164	0%	109	32.1%	2	0%	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
FAM54A	113115	genome.wustl.edu	37	6	136564103	136564103	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099286.1	-1	validated	p.P59	0.000	119	0%	154	33.1%	7	14.2%	-	-	-	HMMPfam_DUF729
MAP3K5	4217	genome.wustl.edu	37	6	136913321	136913321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005923.3	-1	reviewed	p.S1072F	0.999	80	0%	38	36.8%	6	16.6%	benign(0.052)	tolerated(0.13)	neutral(0.256)	NULL
NHSL1	57224	genome.wustl.edu	37	6	138752115	138752115	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144060.1	-1	validated	p.N1123H	0.858	35	0%	70	40%	16	31.2%	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
REPS1	85021	genome.wustl.edu	37	6	139232480	139232480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031922.3	-1	validated	p.S666Y	1.000	173	0%	136	32.4%	39	35.8%	benign(0.313)	deleterious(0.02)	deleterious(0.481)	NULL
NMBR	4829	genome.wustl.edu	37	6	142399812	142399812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002511.2	-1	validated	p.F217L	1.000	195	0%	108	31.5%	0	-	benign(0.333)	deleterious(0)	deleterious(0.549)	HMMPfam_7tm_1,superfamily_SSF81321
GPR126	57211	genome.wustl.edu	37	6	142691825	142691825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198569.2	+1	reviewed	p.L322F	1.000	65	0%	43	30.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ConA_like_lec_gl
GPR126	57211	genome.wustl.edu	37	6	142738465	142738465	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198569.2	+1	reviewed	p.V998	0.982	279	0%	124	40.3%	0	-	-	-	-	HMMPfam_7tm_2,superfamily_SSF81321
HIVEP2	3097	genome.wustl.edu	37	6	143093196	143093196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006734.3	-1	provisional	p.T894A	1.000	198	0%	163	25.2%	9	44.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PEX3	8504	genome.wustl.edu	37	6	143772221	143772221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003630.2	+1	reviewed	p.K14N	1.000	94	0%	149	30.2%	11	27.2%	possibly_damaging(0.909)	deleterious(0.01)	deleterious(0.768)	HMMPfam_Peroxin-3
PEX3	8504	genome.wustl.edu	37	6	143800251	143800251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003630.2	+1	reviewed	p.R286Q	1.000	190	0%	108	25.9%	26	50%	probably_damaging(0.998)	tolerated(0.21)	deleterious(0.518)	HMMPfam_Peroxin-3
FUCA2	2519	genome.wustl.edu	37	6	143818590	143818590	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032020.3	-1	validated	p.L400R	0.998	133	0%	90	31.1%	84	38%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Alpha_L_fucos,HMMSmart_Alpha_L_fucos
PHACTR2	9749	genome.wustl.edu	37	6	144070121	144070121	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100164.1	+1	validated	e3-1	1.000	164	0%	137	25.5%	0	-	-	-	-	-
LTV1	84946	genome.wustl.edu	37	6	144184235	144184235	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032860.3	+1	provisional	p.R377*	0.986	115	0%	76	18.4%	31	12.9%	-	-	-	HMMPfam_LTV
ZC2HC1B	153918	genome.wustl.edu	37	6	144207862	144207862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013623.2	+1	validated	p.D85Y	1.000	132	0%	67	10.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UTRN	7402	genome.wustl.edu	37	6	144613013	144613013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007124.2	+1	reviewed	p.E17K	0.864	101	0%	103	28.2%	2	50%	benign(0.009)	deleterious(0.02)	neutral(0.384)	superfamily_Calponin-homology
UTRN	7402	genome.wustl.edu	37	6	144774943	144774943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007124.2	+1	reviewed	p.R741I	0.708	134	0%	68	30.9%	1	0%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144780022	144780022	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007124.2	+1	reviewed	p.N801H	0.261	49	0%	37	32.4%	4	0%	benign(0.093)	tolerated(0.17)	neutral(0.066)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144795847	144795847	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007124.2	+1	reviewed	p.Q1096	0.460	131	0%	195	32.3%	1	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144820548	144820548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007124.2	+1	reviewed	p.E1583D	0.986	55	0%	85	10.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144838031	144838031	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007124.2	+1	reviewed	p.E1830*	1.000	113	0%	61	39.3%	4	0%	-	-	-	NULL
FBXO30	84085	genome.wustl.edu	37	6	146121337	146121337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032145.4	-1	reviewed	p.R715W	0.948	85	0%	47	40.4%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBXO30	84085	genome.wustl.edu	37	6	146125924	146125924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032145.4	-1	reviewed	p.H540N	1.000	54	0%	46	30.4%	9	66.6%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
SHPRH	257218	genome.wustl.edu	37	6	146244837	146244837	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042683.2	-1	validated	p.R1172*	1.000	338	0.3%	107	29.9%	3	0%	-	-	-	NULL
GRM1	2911	genome.wustl.edu	37	6	146720182	146720182	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000838.3	+1	reviewed	p.A669	1.000	152	0%	130	36.9%	0	-	-	-	-	HMMPfam_7tm_3
ADGB	79747	genome.wustl.edu	37	6	147045379	147045379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024694.3	+1	provisional	p.S718Y	0.877	154	0%	94	29.8%	0	-	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
ADGB	79747	genome.wustl.edu	37	6	147073671	147073671	+	Missense_Mutation	SNP	C	C	T	rs186199600	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024694.3	+1	provisional	p.S1124L	0.910	87	0%	46	26.1%	0	-	benign(0.205)	tolerated(0.35)	neutral(0.041)	NULL
ADGB	79747	genome.wustl.edu	37	6	147128622	147128622	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000367489	+1	known	p.L580	0.004	33	0%	52	28.8%	0	-	-	-	-	NULL
STXBP5	134957	genome.wustl.edu	37	6	147636697	147636697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127715.1	+1	reviewed	p.E483D	0.999	90	0%	50	12%	0	-	benign(0.155)	tolerated(0.1)	neutral(0.300)	superfamily_WD40 repeat-like
SAMD5	389432	genome.wustl.edu	37	6	147885571	147885571	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030060.2	+1	validated	p.P167	1.000	118	0%	76	26.3%	0	-	-	-	-	NULL
TAB2	23118	genome.wustl.edu	37	6	149700405	149700405	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015093.4	+1	reviewed	p.R452*	1.000	86	0%	92	33.7%	46	23.9%	-	-	-	NULL
LATS1	9113	genome.wustl.edu	37	6	150004302	150004302	+	Missense_Mutation	SNP	G	G	T	rs35163691		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004690.2	-1	reviewed	p.F641L	1.000	178	0%	146	32.2%	6	33.3%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
NUP43	348995	genome.wustl.edu	37	6	150048232	150048232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198887.1	-1	validated	p.R339Q	0.998	135	0%	147	36.7%	23	39.1%	benign(0.377)	tolerated(0.07)	neutral(0.440)	NULL
RAET1L	154064	genome.wustl.edu	37	6	150342234	150342234	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130900.2	-1	validated	p.Q146	0.000	360	0%	445	34.4%	0	-	-	-	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
PLEKHG1	57480	genome.wustl.edu	37	6	151162001	151162001	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029884.1	+1	provisional	p.F1376C	1.000	31	0%	26	34.6%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151670019	151670019	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005100.3	+1	reviewed	p.S165A	0.973	82	0%	75	29.3%	0	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151671831	151671831	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005100.3	+1	reviewed	p.R769	0.928	46	0%	51	41.2%	0	-	-	-	-	HMMPfam_WSK
C6orf211	79624	genome.wustl.edu	37	6	151779539	151779539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024573.1	+1	predicted	p.F75C	0.267	131	0%	148	33.1%	55	60%	unknown(0)	-	-	HMMPfam_DUF89,superfamily_DUF89
C6orf97	80129	genome.wustl.edu	37	6	151857537	151857537	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025059.3	+1	validated	p.E48*	1.000	119	0%	78	35.9%	3	0%	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152542080	152542080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.S7253L	0.004	130	0%	55	72.7%	6	0%	benign(0.018)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152577882	152577882	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.R6331	0.932	60	0%	60	18.3%	1	0%	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152637963	152637963	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000413186	-1	known	p.I5579	0.677	177	0%	129	27.1%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152642522	152642522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.L5363I	0.998	169	0%	140	12.9%	0	-	possibly_damaging(0.442)	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152652609	152652609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.L4404P	0.926	100	0%	63	17.5%	0	-	possibly_damaging(0.951)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152660419	152660419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.S4103L	0.043	251	0%	88	20.5%	0	-	benign(0)	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152679555	152679555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.L3521I	1.000	218	0%	137	36.5%	0	-	probably_damaging(0.975)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152683409	152683409	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.R3399*	0.890	145	0%	104	29.8%	0	-	-	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152706905	152706905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.F2852L	0.999	199	0%	78	37.2%	0	-	benign(0.006)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152716701	152716701	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.K2554	1.000	299	0%	152	23.7%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152720786	152720786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.A2401V	1.000	195	0%	57	29.8%	0	-	possibly_damaging(0.692)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152730208	152730208	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.L2179	1.000	266	0%	140	32.1%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152779939	152779939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.L841I	1.000	100	0%	82	29.3%	1	0%	possibly_damaging(0.878)	tolerated(0.47)	neutral(0.353)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152786476	152786476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.R617C	0.999	257	0%	173	28.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152823821	152823821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182961.2	-1	reviewed	p.L279M	1.000	190	0%	112	24.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
RGS17	26575	genome.wustl.edu	37	6	153345460	153345460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012419.4	-1	reviewed	p.K127N	1.000	285	0%	180	35%	1	0%	benign(0.001)	tolerated(0.36)	neutral(0.020)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
IPCEF1	26034	genome.wustl.edu	37	6	154520992	154520992	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130699.1	-1	validated	p.T240	0.000	130	0%	57	26.3%	3	66.6%	-	-	-	NULL
SCAF8	22828	genome.wustl.edu	37	6	155139671	155139671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014892.3	+1	validated	p.R527Q	1.000	202	0%	122	27%	19	42.1%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TIAM2	26230	genome.wustl.edu	37	6	155561738	155561738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012454.3	+1	reviewed	p.E1081D	0.021	55	0%	76	40.8%	2	50%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
NOX3	50508	genome.wustl.edu	37	6	155717994	155717994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015718.2	-1	reviewed	p.F561L	0.996	88	0%	37	16.2%	1	100%	possibly_damaging(0.728)	deleterious(0.01)	deleterious(0.671)	NULL
SYNJ2	8871	genome.wustl.edu	37	6	158454697	158454697	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003898.3	+1	reviewed	p.F232	1.000	35	0%	39	43.6%	2	0%	-	-	-	HMMPfam_Syja_N
SYNJ2	8871	genome.wustl.edu	37	6	158487585	158487585	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003898.3	+1	reviewed	p.F545	0.977	17	0%	51	31.4%	5	80%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
TMEM181	57583	genome.wustl.edu	37	6	159050828	159050828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020823.1	+1	validated	p.S557Y	0.040	236	0%	343	25.9%	21	28.5%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
TAGAP	117289	genome.wustl.edu	37	6	159457526	159457526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054114.3	-1	reviewed	p.S510Y	1.000	101	0%	81	27.2%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159644568	159644568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032532.2	+1	validated	p.E259K	0.708	223	0%	215	30.7%	3	0%	unknown(0)	tolerated(0.13)	-	superfamily_FN_III-like
FNDC1	84624	genome.wustl.edu	37	6	159660582	159660582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032532.2	+1	validated	p.G1405D	0.990	49	0%	81	14.8%	8	0%	unknown(0)	deleterious(0)	-	NULL
PNLDC1	154197	genome.wustl.edu	37	6	160225063	160225063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173516.1	+1	provisional	p.F94L	1.000	249	0%	399	33.1%	0	-	benign(0.038)	tolerated(0.16)	neutral(0.061)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
IGF2R	3482	genome.wustl.edu	37	6	160499382	160499382	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000876.2	+1	reviewed	p.T1822	0.000	115	0%	130	12.3%	76	5.2%	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160504994	160504994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000876.2	+1	reviewed	p.R1949Q	0.620	55	0%	77	11.7%	65	10.7%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A1	6580	genome.wustl.edu	37	6	160543171	160543171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003057.2	+1	reviewed	p.E68D	1.000	37	0%	41	39%	0	-	benign(0.254)	tolerated(0.26)	neutral(0.060)	NULL
SLC22A2	6582	genome.wustl.edu	37	6	160664676	160664676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003058.2	-1	reviewed	p.R403C	0.468	71	0%	41	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_SUGAR_TRANSPORT_1,superfamily_MFS general substrate transporter
LPA	4018	genome.wustl.edu	37	6	160978488	160978488	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005577.2	-1	reviewed	p.E1583*	0.002	131	0%	103	33%	0	-	-	-	-	superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161162342	161162342	+	Splice_Site	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000301.3	+1	reviewed	e17-1	0.995	116	0%	45	33.3%	0	-	-	-	-	-
PLG	5340	genome.wustl.edu	37	6	161174009	161174009	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000301.3	+1	reviewed	p.G783	1.000	288	0%	178	32%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MAP3K4	4216	genome.wustl.edu	37	6	161533759	161533759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005922.2	+1	reviewed	p.D1527N	1.000	79	0%	48	33.3%	48	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PARK2	5071	genome.wustl.edu	37	6	161771140	161771140	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004562.2	-1	reviewed	p.F463	1.000	18	0%	47	40.4%	5	40%	-	-	-	NULL
PDE10A	10846	genome.wustl.edu	37	6	165827143	165827143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130690.1	-1	validated	p.R375L	0.981	76	1.3%	85	36.5%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
T	6862	genome.wustl.edu	37	6	166578101	166578101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003181.2	-1	reviewed	p.Y241S	0.615	74	0%	119	26.9%	0	-	benign(0.048)	tolerated(0.13)	neutral(0.256)	NULL
RPS6KA2	6196	genome.wustl.edu	37	6	166864702	166864702	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006932.1	-1	reviewed	p.P373	1.000	99	0%	147	42.2%	13	38.4%	-	-	-	HMMSmart_S_TK_X,HMMPfam_Pkinase_C
MLLT4	4301	genome.wustl.edu	37	6	168347398	168347398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040001.1	+1	validated	p.R1116C	1.000	131	0%	84	39.3%	63	65%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_PDZ
THBS2	7058	genome.wustl.edu	37	6	169632223	169632223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003247.2	-1	reviewed	p.L668P	1.000	163	0%	329	21.3%	25	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_EGF,HMMSmart_EGF
PHF10	55274	genome.wustl.edu	37	6	170112483	170112483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018288.3	-1	reviewed	p.S319L	1.000	193	0%	150	27.3%	93	39.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
TCTE3	6991	genome.wustl.edu	37	6	170143247	170143247	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174910.1	-1	provisional	p.E139*	1.000	132	0%	136	33.8%	0	-	-	-	-	HMMPfam_Tctex-1
C6orf70	55780	genome.wustl.edu	37	6	170156857	170156857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018341.1	+1	validated	p.D154Y	1.000	267	0%	364	16.2%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C6orf70	55780	genome.wustl.edu	37	6	170173461	170173461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018341.1	+1	validated	p.S427N	0.000	193	0%	196	29.6%	13	30.7%	benign(0.025)	tolerated(0.33)	neutral(0.025)	NULL
PDCD2	5134	genome.wustl.edu	37	6	170889100	170889100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002598.2	-1	reviewed	p.E251V	1.000	106	0%	182	30.8%	22	22.7%	benign(0.249)	tolerated(0.12)	neutral(0.286)	HMMPfam_PDCD2_C
SUN1	23353	genome.wustl.edu	37	7	883201	883201	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000403868	+1	known	p.P234	0.000	30	0%	31	32.3%	0	-	-	-	-	HMMPfam_MRP
ELFN1	392617	genome.wustl.edu	37	7	1784533	1784533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128636.2	+1	validated	p.D101N	1.000	45	0%	69	27.5%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
MAD1L1	8379	genome.wustl.edu	37	7	2020159	2020159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013836.1	-1	reviewed	p.K478N	1.000	38	0%	46	30.4%	27	40.7%	benign(0.253)	tolerated(0.25)	neutral(0.063)	HMMPfam_MAD
SNX8	29886	genome.wustl.edu	37	7	2309254	2309254	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013321.1	-1	provisional	p.K187N	0.999	52	0%	84	27.4%	32	46.8%	possibly_damaging(0.773)	deleterious(0.01)	deleterious(0.693)	NULL
EIF3B	8662	genome.wustl.edu	37	7	2409115	2409115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037283.1	+1	validated	p.S471Y	1.000	163	0%	197	26.4%	78	48.7%	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
AMZ1	155185	genome.wustl.edu	37	7	2740170	2740170	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133463.1	+1	provisional	p.Q29E	1.000	31	0%	58	32.8%	1	0%	benign(0.138)	tolerated(0.24)	neutral(0.049)	NULL
SDK1	221935	genome.wustl.edu	37	7	3678657	3678657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152744.3	+1	validated	p.Q160H	0.926	82	0%	116	31%	5	60%	benign(0.116)	tolerated(0.08)	neutral(0.309)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
RADIL	55698	genome.wustl.edu	37	7	4854968	4854968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018059.4	-1	validated	p.F694L	1.000	12	0%	22	31.8%	0	-	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	HMMPfam_DIL
PAPOLB	56903	genome.wustl.edu	37	7	4899749	4899749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020144.4	-1	validated	p.A565T	0.001	120	0%	182	32.4%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
PAPOLB	56903	genome.wustl.edu	37	7	4900342	4900342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020144.4	-1	validated	p.S367N	0.997	293	0%	482	37.8%	0	-	benign(0)	tolerated(1)	-	HMMPfam_PAP_RNA-bind,superfamily_PAP_C
TNRC18	84629	genome.wustl.edu	37	7	5391703	5391703	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080495.2	-1	provisional	p.E1739D	0.218	102	0%	135	41.5%	78	39.7%	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	NULL
TNRC18	84629	genome.wustl.edu	37	7	5434072	5434072	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080495.2	-1	provisional	p.E114	1.000	17	0%	42	38.1%	41	41.4%	-	-	-	NULL
RNF216	54476	genome.wustl.edu	37	7	5760734	5760734	+	Missense_Mutation	SNP	C	C	T	rs188558006	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207111.2	-1	reviewed	p.R525Q	0.995	198	0%	225	33.8%	18	38.8%	benign(0.003)	tolerated(0.39)	neutral(0.016)	NULL
PMS2	5395	genome.wustl.edu	37	7	6022616	6022616	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000535.5	-1	reviewed	p.T671	0.038	145	0%	166	16.9%	11	36.3%	-	-	-	NULL
PMS2	5395	genome.wustl.edu	37	7	6026525	6026525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000535.5	-1	reviewed	p.S624Y	0.905	170	0%	185	25.9%	7	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
PMS2	5395	genome.wustl.edu	37	7	6038760	6038760	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000535.5	-1	reviewed	p.G228	0.996	164	0%	166	28.3%	12	41.6%	-	-	-	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Ribosomal protein S5 domain 2-like
PMS2	5395	genome.wustl.edu	37	7	6043624	6043624	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000535.5	-1	reviewed	p.E77*	1.000	220	0%	285	31.9%	2	0%	-	-	-	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RAC1	5879	genome.wustl.edu	37	7	6438343	6438343	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018890.3	+1	reviewed	p.P92	0.994	54	0%	75	32%	9	33.3%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRID2IP	392862	genome.wustl.edu	37	7	6537829	6537829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145118.1	-1	validated	p.R1144W	1.000	23	0%	39	48.7%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
GRID2IP	392862	genome.wustl.edu	37	7	6542703	6542703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145118.1	-1	validated	p.L1000R	0.996	128	0%	246	21.5%	2	100%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
ENSG00000198580	0	genome.wustl.edu	37	7	6715801	6715801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000401847	+1	known	p.K327T	0.000	19	0%	19	26.3%	0	-	benign(0.036)	tolerated(0.1)	neutral(0.288)	superfamily_C2H2 and C2HC zinc fingers
ZNF12	7559	genome.wustl.edu	37	7	6730647	6730647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016265.3	-1	reviewed	p.F642L	0.989	186	0%	106	40.6%	13	53.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RSPH10B2	728194	genome.wustl.edu	37	7	6821074	6821074	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099697.1	+1	provisional	p.T575	0.007	129	0%	137	25.5%	0	-	-	-	-	NULL
CCZ1B	221960	genome.wustl.edu	37	7	6864133	6864133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198097.2	-1	predicted	p.N89D	1.000	406	0%	628	29.5%	26	15.3%	benign(0.407)	deleterious(0.03)	deleterious(0.496)	HMMPfam_DUF2049
LOC100131257	100131257	genome.wustl.edu	37	7	7118205	7118205	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001716696.1	-1	model	p.Q333H	0.977	46	0%	20	25%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ICA1	3382	genome.wustl.edu	37	7	8260990	8260990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004968.2	-1	reviewed	p.R99*	1.000	162	0%	49	10.2%	2	0%	-	-	-	HMMPfam_Arfaptin
ICA1	3382	genome.wustl.edu	37	7	8268265	8268265	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004968.2	-1	reviewed	p.S74	1.000	201	0%	144	27.1%	3	0%	-	-	-	HMMPfam_Arfaptin
NXPH1	30010	genome.wustl.edu	37	7	8790931	8790931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152745.2	+1	reviewed	p.K116N	1.000	96	0%	40	20%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neurexophilin
LOC340268	340268	genome.wustl.edu	37	7	9767364	9767364	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_041608.1	+1	model	NULL	0.998	95	0%	124	29.8%	2	0%	-	-	-	-
LOC340268	340268	genome.wustl.edu	37	7	9767394	9767394	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_041608.1	+1	model	NULL	0.997	89	0%	105	41%	4	0%	-	-	-	-
THSD7A	221981	genome.wustl.edu	37	7	11445978	11445978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015204.2	-1	validated	p.D1396Y	1.000	98	0%	61	26.2%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	HMMSmart_SM00209
VWDE	221806	genome.wustl.edu	37	7	12397065	12397065	+	Silent	SNP	G	G	A	rs187389208	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135924.1	-1	provisional	p.F1117	0.204	106	0%	88	33%	0	-	-	-	-	NULL
VWDE	221806	genome.wustl.edu	37	7	12401120	12401120	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135924.1	-1	provisional	p.E976*	0.969	70	0%	39	20.5%	0	-	-	-	-	NULL
VWDE	221806	genome.wustl.edu	37	7	12410326	12410326	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135924.1	-1	provisional	p.I584M	0.791	76	0%	49	26.5%	0	-	possibly_damaging(0.701)	tolerated(0.06)	deleterious(0.575)	NULL
VWDE	221806	genome.wustl.edu	37	7	12417507	12417507	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135924.1	-1	provisional	p.E307*	0.998	212	0%	151	24.5%	1	0%	-	-	-	NULL
DGKB	1607	genome.wustl.edu	37	7	14797330	14797330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004080.2	-1	reviewed	p.L33I	1.000	126	0%	84	26.2%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	superfamily_EF-hand
BZW2	28969	genome.wustl.edu	37	7	16714165	16714165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014038.2	+1	validated	p.R63C	1.000	85	0%	69	30.4%	72	51.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AGR2	10551	genome.wustl.edu	37	7	16840828	16840828	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006408.3	-1	validated	e3-1	1.000	193	0%	111	27%	0	-	-	-	-	-
AHR	196	genome.wustl.edu	37	7	17379554	17379554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001621.4	+1	validated	p.S702Y	0.723	119	0%	118	28.8%	35	42.8%	benign(0.237)	deleterious(0.01)	neutral(0.429)	NULL
SNX13	23161	genome.wustl.edu	37	7	17885226	17885226	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015132.4	-1	reviewed	p.F386C	1.000	73	0%	40	55%	21	42.8%	benign(0.143)	deleterious(0.01)	neutral(0.418)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
HDAC9	9734	genome.wustl.edu	37	7	18706067	18706067	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178425.2	+1	reviewed	p.E567*	1.000	109	0%	60	20%	17	35.2%	-	-	-	NULL
FERD3L	222894	genome.wustl.edu	37	7	19184784	19184784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152898.2	-1	validated	p.E68K	0.002	43	0%	57	28.1%	0	-	possibly_damaging(0.921)	tolerated(0.57)	neutral(0.377)	NULL
ITGB8	3696	genome.wustl.edu	37	7	20441521	20441521	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002214.2	+1	reviewed	p.L487	0.000	196	0%	121	26.4%	1	0%	-	-	-	NULL
ABCB5	340273	genome.wustl.edu	37	7	20766747	20766747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178559.5	+1	validated	p.L459F	0.866	126	0%	92	30.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB5	340273	genome.wustl.edu	37	7	20782533	20782533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178559.5	+1	validated	p.V575F	0.930	207	0%	110	13.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH11	8701	genome.wustl.edu	37	7	21646079	21646079	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003777.3	+1	reviewed	p.I1228	0.979	123	0%	89	11.2%	0	-	-	-	-	NULL
DNAH11	8701	genome.wustl.edu	37	7	21789321	21789321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003777.3	+1	reviewed	p.R2907Q	1.000	157	0%	72	23.6%	0	-	possibly_damaging(0.691)	deleterious(0)	deleterious(0.692)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAPGEF5	9771	genome.wustl.edu	37	7	22259567	22259567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012294.3	-1	validated	p.R152Q	0.989	252	0%	144	27.1%	0	-	probably_damaging(0.997)	tolerated(0.36)	deleterious(0.486)	NULL
RAPGEF5	9771	genome.wustl.edu	37	7	22270533	22270533	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012294.3	-1	validated	p.E115*	0.999	199	0%	60	33.3%	0	-	-	-	-	NULL
RAPGEF5	9771	genome.wustl.edu	37	7	22348029	22348029	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012294.3	-1	validated	p.E50	0.915	143	0%	88	28.4%	1	0%	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
ENSG00000105889	0	genome.wustl.edu	37	7	22534459	22534459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441815	-1	known	p.D153Y	0.987	360	0%	394	29.9%	1	0%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
TOMM7	54543	genome.wustl.edu	37	7	22852783	22852783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000372879	-1	known	p.L104S	0.393	101	0%	143	18.2%	734	41%	unknown(0)	-	-	NULL
FAM126A	84668	genome.wustl.edu	37	7	22999924	22999924	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000440481	-1	known	p.E366G	1.000	204	0%	191	28.3%	3	66.6%	-	-	-	HMMPfam_Hyccin
KLHL7	55975	genome.wustl.edu	37	7	23145721	23145721	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031710.2	+1	reviewed	p.L26V	0.994	55	0%	90	33.3%	38	50%	possibly_damaging(0.891)	tolerated(0.2)	neutral(0.399)	superfamily_BTB/POZ_fold
GPNMB	10457	genome.wustl.edu	37	7	23296733	23296733	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000409458	+1	known	p.F197C	0.001	70	0%	32	34.4%	0	-	benign(0.04)	tolerated(0.12)	neutral(0.263)	NULL
STK31	56164	genome.wustl.edu	37	7	23793941	23793941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031414.3	+1	reviewed	p.D381N	0.135	177	0%	141	31.9%	0	-	benign(0)	tolerated(1)	-	NULL
STK31	56164	genome.wustl.edu	37	7	23810683	23810683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031414.3	+1	reviewed	p.K591N	0.997	150	0%	71	33.8%	0	-	possibly_damaging(0.507)	tolerated(0.06)	deleterious(0.492)	NULL
NPY	4852	genome.wustl.edu	37	7	24324930	24324930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000905.3	+1	reviewed	p.A24V	0.494	17	0%	51	37.3%	0	-	benign(0.011)	tolerated(0.06)	neutral(0.323)	NULL
MPP6	51678	genome.wustl.edu	37	7	24681473	24681473	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016447.2	+1	provisional	p.E86*	1.000	127	0%	102	28.4%	6	33.3%	-	-	-	HMMSmart_SM00569,HMMPfam_L27
MPP6	51678	genome.wustl.edu	37	7	24703285	24703285	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016447.2	+1	provisional	p.F243C	1.000	193	0%	88	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
CYCS	54205	genome.wustl.edu	37	7	25163710	25163710	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018947.4	-1	reviewed	p.I10S	1.000	74	0%	120	28.3%	166	54.2%	possibly_damaging(0.554)	deleterious(0)	deleterious(0.633)	HMMPfam_Cytochrom_C,superfamily_Cytochrome c
C7orf31	136895	genome.wustl.edu	37	7	25176354	25176354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138811.3	-1	validated	p.R337Q	0.621	109	0%	67	14.9%	3	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SKAP2	8935	genome.wustl.edu	37	7	26724363	26724363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003930.3	-1	reviewed	p.L327I	1.000	113	0%	86	26.7%	14	14.2%	possibly_damaging(0.579)	tolerated(0.27)	neutral(0.233)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SKAP2	8935	genome.wustl.edu	37	7	26729929	26729929	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003930.3	-1	reviewed	p.S283	0.880	186	0%	79	27.8%	13	30.7%	-	-	-	superfamily_SH3-domain
HOXA2	3199	genome.wustl.edu	37	7	27140743	27140743	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006735.3	-1	reviewed	p.E245*	1.000	86	0%	176	32.4%	1	100%	-	-	-	NULL
HOXA5	3202	genome.wustl.edu	37	7	27181510	27181510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019102.2	-1	reviewed	p.D253Y	1.000	150	0%	246	26.8%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00389,superfamily_Homeodomain-like
LOC100289444	100289444	genome.wustl.edu	37	7	27203043	27203043	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342713.1	+1	model	p.R347*	0.000	39	0%	61	37.7%	45	40%	-	-	-	NULL
HOXA13	3209	genome.wustl.edu	37	7	27237871	27237871	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000522.4	-1	reviewed	p.Q371	1.000	337	0%	700	33.3%	1	100%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
ENSG00000248357	0	genome.wustl.edu	37	7	27498201	27498201	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000506075	+1	novel	NULL	1.000	131	0%	223	15.7%	106	0.9%	-	-	-	-
CREB5	9586	genome.wustl.edu	37	7	28858886	28858886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182898.2	+1	reviewed	p.P506L	1.000	113	0%	88	29.5%	2	50%	unknown(0)	deleterious(0)	-	NULL
CHN2	1124	genome.wustl.edu	37	7	29394237	29394237	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000409964	+1	known	e1-2	0.996	66	0%	48	37.5%	0	-	-	-	-	-
SCRN1	9805	genome.wustl.edu	37	7	29966137	29966137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145514.1	-1	reviewed	p.E359D	1.000	79	0%	77	24.7%	17	64.7%	benign(0.422)	tolerated(0.18)	neutral(0.193)	NULL
GARS	2617	genome.wustl.edu	37	7	30639571	30639571	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002047.2	+1	reviewed	p.A111	0.287	85	0%	131	35.9%	78	44.8%	-	-	-	HMMPfam_WHEP-TRS
ADCYAP1R1	117	genome.wustl.edu	37	7	31120239	31120239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001118.3	+1	reviewed	p.E93K	0.828	111	0%	131	34.4%	0	-	benign(0.004)	tolerated(0.11)	neutral(0.272)	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793)
LSM5	23658	genome.wustl.edu	37	7	32528929	32528929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012322.2	-1	validated	p.R25I	1.000	118	0%	160	33.1%	111	44.1%	possibly_damaging(0.816)	deleterious(0.01)	deleterious(0.714)	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
KBTBD2	25948	genome.wustl.edu	37	7	32909420	32909420	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015483.2	-1	validated	p.K470T	1.000	96	0%	41	17.1%	28	10.7%	benign(0.004)	tolerated(0.6)	neutral(0.004)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KBTBD2	25948	genome.wustl.edu	37	7	32909627	32909627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015483.2	-1	validated	p.R401I	1.000	240	0%	110	41.8%	47	40.4%	probably_damaging(0.998)	tolerated(0.45)	deleterious(0.486)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
FKBP9	11328	genome.wustl.edu	37	7	33014331	33014331	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007270.3	+1	validated	p.F108	0.252	128	0%	90	31.1%	65	41.5%	-	-	-	HMMPfam_FKBP_C,superfamily_SSF54534
NT5C3	51251	genome.wustl.edu	37	7	33057195	33057195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002010.1	-1	reviewed	p.F188L	1.000	121	0%	70	27.1%	33	36.3%	benign(0.109)	tolerated(0.38)	neutral(0.026)	HMMPfam_UMPH-1,superfamily_HAD-like
BBS9	27241	genome.wustl.edu	37	7	33388774	33388774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198428.2	+1	reviewed	p.E475G	0.994	219	0%	161	32.9%	11	27.2%	benign(0.039)	tolerated(0.18)	neutral(0.058)	NULL
NPSR1	387129	genome.wustl.edu	37	7	34851415	34851415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207173.1	+1	reviewed	p.V140L	1.000	189	0%	150	40%	0	-	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
HERPUD2	64224	genome.wustl.edu	37	7	35673409	35673409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022373.4	-1	validated	p.E371G	1.000	280	0%	128	29.7%	19	63.1%	benign(0.152)	tolerated(0.35)	neutral(0.034)	NULL
EEPD1	80820	genome.wustl.edu	37	7	36336744	36336744	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030636.2	+1	validated	p.S486	0.163	210	0%	190	30%	11	18.1%	-	-	-	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
EEPD1	80820	genome.wustl.edu	37	7	36336749	36336749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030636.2	+1	validated	p.S488Y	0.999	208	0%	189	37%	9	55.5%	possibly_damaging(0.444)	tolerated(0.09)	neutral(0.442)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
ANLN	54443	genome.wustl.edu	37	7	36438750	36438750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018685.2	+1	validated	p.V79I	0.837	67	0%	75	24%	16	25%	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
ANLN	54443	genome.wustl.edu	37	7	36459857	36459857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000446635	+1	known	p.E9*	1.000	73	0%	29	27.6%	17	35.2%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
AOAH	313	genome.wustl.edu	37	7	36713604	36713604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001637.3	-1	reviewed	p.F78L	0.997	214	0%	271	28.8%	4	0%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMSmart_SapB,superfamily_Saposin_like
ELMO1	9844	genome.wustl.edu	37	7	37136254	37136254	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014800.9	-1	reviewed	p.L424	1.000	112	0%	52	34.6%	14	0%	-	-	-	HMMPfam_ELMO_CED12
ELMO1	9844	genome.wustl.edu	37	7	37283994	37283994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014800.9	-1	reviewed	p.R139Q	1.000	158	0%	82	32.9%	5	0%	benign(0.047)	tolerated(0.59)	neutral(0.007)	superfamily_ARM repeat
GPR141	353345	genome.wustl.edu	37	7	37780794	37780794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181791.1	+1	provisional	p.E267K	1.000	215	0%	82	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
AMPH	273	genome.wustl.edu	37	7	38502589	38502589	+	Missense_Mutation	SNP	G	G	A	rs151055033	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001635.2	-1	reviewed	p.R292W	0.710	215	0%	153	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS41	27072	genome.wustl.edu	37	7	38796567	38796567	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014396.3	-1	reviewed	p.K522	1.000	146	0%	110	33.6%	16	43.7%	-	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
POU6F2	11281	genome.wustl.edu	37	7	39504072	39504072	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007252.3	+1	reviewed	p.I621	1.000	73	0%	71	33.8%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
INHBA	3624	genome.wustl.edu	37	7	41729875	41729875	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002192.2	-1	reviewed	p.W218*	1.000	95	0%	56	23.2%	1	0%	-	-	-	HMMPfam_TGFb_propeptide
INHBA	3624	genome.wustl.edu	37	7	41739731	41739731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002192.2	-1	reviewed	p.A81V	1.000	65	0%	69	36.2%	4	0%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_TGFb_propeptide
GLI3	2737	genome.wustl.edu	37	7	42004786	42004786	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000168.5	-1	reviewed	p.F1295	0.006	29	0%	39	23.1%	1	0%	-	-	-	NULL
BLVRA	644	genome.wustl.edu	37	7	43840110	43840110	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000712.3	+1	validated	p.F133	0.995	82	0%	59	45.8%	71	45%	-	-	-	HMMPfam_Biliv-reduc_cat,superfamily_NAD(P)-bd,superfamily_SSF55347
URGCP	55665	genome.wustl.edu	37	7	43916340	43916340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077663.1	-1	validated	p.E908K	0.913	118	0%	250	30%	35	48.5%	probably_damaging(0.99)	tolerated(0.36)	neutral(0.462)	NULL
URGCP	55665	genome.wustl.edu	37	7	43917455	43917455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077663.1	-1	validated	p.R536Q	0.067	54	0%	66	40.9%	24	66.6%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
URGCP	55665	genome.wustl.edu	37	7	43918272	43918272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077663.1	-1	validated	p.A264T	0.974	35	0%	44	34.1%	30	40%	possibly_damaging(0.676)	tolerated(0.25)	neutral(0.277)	NULL
AEBP1	165	genome.wustl.edu	37	7	44149688	44149688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129.3	+1	reviewed	p.G409S	0.993	30	0%	59	27.1%	49	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
DDX56	54606	genome.wustl.edu	37	7	44612538	44612538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019082.2	-1	reviewed	p.D112Y	0.997	58	0%	83	20.5%	46	26%	possibly_damaging(0.795)	deleterious(0.02)	deleterious(0.681)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZMIZ2	83637	genome.wustl.edu	37	7	44802587	44802587	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031449.3	+1	validated	e11+2	1.000	50	0%	75	14.7%	1	100%	-	-	-	-
MYO1G	64005	genome.wustl.edu	37	7	45016546	45016546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033054.2	-1	validated	p.R74W	1.000	33	0%	53	34%	12	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADCY1	107	genome.wustl.edu	37	7	45725746	45725746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021116.2	+1	reviewed	p.M753I	1.000	95	1.1%	85	31.8%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47852826	47852826	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000433506	-1	known	p.P4S	0.001	194	0%	176	25.6%	1	0%	-	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47955181	47955181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138295.2	-1	reviewed	p.L359R	0.001	179	0%	134	36.6%	0	-	benign(0.008)	deleterious(0.01)	neutral(0.406)	NULL
SUN3	256979	genome.wustl.edu	37	7	48046884	48046884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030019.1	-1	validated	p.L124I	0.988	185	0%	111	35.1%	0	-	benign(0.409)	tolerated(0.13)	neutral(0.385)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48312640	48312640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.Q1126R	0.000	85	0%	55	34.5%	0	-	benign(0.124)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48312641	48312641	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.Q1126H	0.000	87	0%	55	32.7%	0	-	benign(0)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48313381	48313381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.R1373H	0.000	66	0%	37	27%	0	-	benign(0.015)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48314362	48314362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.G1700E	0.000	85	0%	68	35.3%	0	-	possibly_damaging(0.739)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48315782	48315782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.K2173N	0.000	91	0%	43	37.2%	0	-	benign(0.097)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48318219	48318219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.K2476N	0.003	113	0%	56	28.6%	0	-	benign(0.039)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48319256	48319256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.R2822I	0.000	59	0%	29	37.9%	0	-	probably_damaging(0.979)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48353922	48353922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.D3259N	0.295	213	0%	127	27.6%	0	-	benign(0)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48626783	48626783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152701.3	+1	reviewed	p.E4847K	0.961	49	0%	29	37.9%	0	-	possibly_damaging(0.873)	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
C7orf72	100130988	genome.wustl.edu	37	7	50180931	50180931	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000297001	+1	known	p.I344	0.001	176	0%	75	17.3%	0	-	-	-	-	NULL
IKZF1	10320	genome.wustl.edu	37	7	50444433	50444433	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006060.3	+1	validated	p.S68Y	1.000	99	0%	106	23.6%	4	0%	-	-	-	NULL
FIGNL1	63979	genome.wustl.edu	37	7	50513201	50513201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042762.1	-1	validated	p.Q595H	0.002	96	0%	135	28.1%	15	20%	benign(0.011)	tolerated(0.12)	neutral(0.261)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDC	1644	genome.wustl.edu	37	7	50611609	50611609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000790.3	-1	reviewed	p.D59N	0.997	133	0%	89	36%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
GRB10	2887	genome.wustl.edu	37	7	50671773	50671773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005311.4	-1	reviewed	p.R489M	0.999	128	0%	110	31.8%	4	100%	benign(0.375)	tolerated(0.15)	neutral(0.360)	superfamily_SH2 domain
GRB10	2887	genome.wustl.edu	37	7	50737450	50737450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005311.4	-1	reviewed	p.S158Y	1.000	22	0%	29	27.6%	8	25%	probably_damaging(0.961)	tolerated(0.33)	neutral(0.428)	NULL
COBL	23242	genome.wustl.edu	37	7	51096895	51096895	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015198.3	-1	validated	p.S633Y	0.005	170	0%	156	34.6%	6	83.3%	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
COBL	23242	genome.wustl.edu	37	7	51261126	51261126	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015198.3	-1	validated	p.E136*	1.000	127	0%	91	40.7%	4	25%	-	-	-	HMMPfam_Cobl
VSTM2A	222008	genome.wustl.edu	37	7	54610435	54610435	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182546.2	+1	validated	p.I4	1.000	494	0%	699	32.8%	0	-	-	-	-	NULL
LANCL2	55915	genome.wustl.edu	37	7	55479744	55479744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018697.3	+1	validated	p.A324T	0.991	50	0%	48	31.2%	37	72.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LANC_like,superfamily_Glyco_trans_6hp
SEPT14	346288	genome.wustl.edu	37	7	55874926	55874926	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207366.2	-1	validated	p.F281	1.000	191	0%	142	23.9%	0	-	-	-	-	HMMPfam_Septin
PHKG1	5260	genome.wustl.edu	37	7	56151012	56151012	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006213.3	-1	reviewed	p.F169C	1.000	87	0%	141	35.5%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF479	90827	genome.wustl.edu	37	7	57187988	57187988	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033273.1	-1	provisional	p.E378	0.999	126	0%	43	25.6%	0	-	-	-	-	superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57188627	57188627	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033273.1	-1	provisional	p.V165	0.049	212	0%	95	27.4%	0	-	-	-	-	superfamily_SSF57667
ZNF716	441234	genome.wustl.edu	37	7	57522820	57522820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342727.1	+1	model	p.Q70K	0.272	347	0.3%	127	26%	0	-	possibly_damaging(0.889)	deleterious(0.04)	deleterious(0.698)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF716	441234	genome.wustl.edu	37	7	57528797	57528797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342727.1	+1	model	p.E210D	0.992	134	0%	94	23.4%	0	-	probably_damaging(0.978)	tolerated(0.1)	deleterious(0.707)	superfamily_C2H2 and C2HC zinc fingers
ZNF679	168417	genome.wustl.edu	37	7	63720634	63720634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153363.2	+1	validated	p.F25L	0.499	186	0%	114	29.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF679	168417	genome.wustl.edu	37	7	63726790	63726790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153363.2	+1	validated	p.R260K	0.999	64	0%	39	35.9%	0	-	benign(0.4)	tolerated(0.52)	neutral(0.137)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF736	728927	genome.wustl.edu	37	7	63808727	63808727	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000423484	+1	known	p.E162	0.000	162	0%	89	33.7%	4	25%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF680	340252	genome.wustl.edu	37	7	63981855	63981855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178558.4	-1	validated	p.R426I	0.956	45	0%	34	35.3%	18	66.6%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF680	340252	genome.wustl.edu	37	7	63982828	63982828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178558.4	-1	validated	p.D102Y	0.008	104	0%	52	32.7%	7	71.4%	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	NULL
ZNF107	51427	genome.wustl.edu	37	7	64167646	64167646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013746.1	+1	validated	p.L322I	1.000	48	0%	32	37.5%	2	50%	possibly_damaging(0.516)	deleterious(0)	deleterious(0.618)	superfamily_SSF57667
ZNF107	51427	genome.wustl.edu	37	7	64168458	64168458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013746.1	+1	validated	p.F592L	0.000	54	0%	57	50.9%	3	66.6%	unknown(0)	tolerated(0.66)	-	superfamily_SSF57667
ZNF138	7697	genome.wustl.edu	37	7	64292059	64292059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006524.2	+1	validated	p.V90I	0.049	111	0%	76	15.8%	2	0%	possibly_damaging(0.56)	tolerated(0.18)	neutral(0.247)	NULL
ZNF273	10793	genome.wustl.edu	37	7	64388284	64388284	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021148.2	+1	reviewed	p.S193*	0.000	134	0%	96	41.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64439479	64439479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015852.3	-1	validated	p.R157I	0.857	126	0%	88	21.6%	2	50%	benign(0.26)	tolerated(0.07)	neutral(0.346)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ERV3-1	2086	genome.wustl.edu	37	7	64452264	64452264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007253.3	-1	reviewed	p.S381R	0.715	131	0%	96	32.3%	27	25.9%	benign(0.359)	deleterious(0.01)	deleterious(0.520)	NULL
ENSG00000245043	0	genome.wustl.edu	37	7	64539062	64539062	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501153	-1	known	NULL	0.998	40	0%	80	23.7%	1	0%	-	-	-	-
RABGEF1	27342	genome.wustl.edu	37	7	66248761	66248761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014504.2	+1	validated	p.F149S	1.000	92	0%	34	14.7%	7	14.2%	benign(0.069)	deleterious(0.04)	neutral(0.353)	superfamily_SSF109993
WBSCR17	64409	genome.wustl.edu	37	7	70800692	70800692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022479.1	+1	reviewed	p.R132H	1.000	58	0%	25	36%	5	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Nucleotide-diphospho-sugar transferases
POM121	9883	genome.wustl.edu	37	7	72413356	72413356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172020.1	+1	reviewed	p.N677D	0.000	136	0%	232	16.8%	34	0%	possibly_damaging(0.609)	tolerated(0.41)	neutral(0.226)	NULL
FZD9	8326	genome.wustl.edu	37	7	72849726	72849726	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003508.2	+1	reviewed	p.I463	0.909	73	0%	110	28.2%	0	-	-	-	-	HMMPfam_Frizzled
MLXIPL	51085	genome.wustl.edu	37	7	73014021	73014021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032951.2	-1	reviewed	p.F302L	1.000	101	0%	155	26.5%	4	25%	benign(0.029)	tolerated(1)	neutral(0.002)	NULL
EIF4H	7458	genome.wustl.edu	37	7	73604022	73604022	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022170.1	+1	reviewed	p.F89	0.989	218	0%	239	38.9%	104	39.4%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
LAT2	7462	genome.wustl.edu	37	7	73638055	73638055	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014146.3	+1	reviewed	p.D130	0.915	54	0%	63	31.7%	8	0%	-	-	-	NULL
GTF2IRD2B	389524	genome.wustl.edu	37	7	74563564	74563564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003795.2	+1	reviewed	p.F437L	1.000	329	0.3%	369	28.2%	6	33.3%	benign(0.094)	tolerated(0.25)	neutral(0.044)	NULL
POR	5447	genome.wustl.edu	37	7	75615099	75615099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000941.2	+1	reviewed	p.V534A	1.000	20	0%	48	29.2%	196	50%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
STYXL1	51657	genome.wustl.edu	37	7	75643072	75643072	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016086.2	-1	validated	p.I147	1.000	70	0%	48	33.3%	16	43.7%	-	-	-	superfamily_Rhodanese/Cell cycle control phosphatase
SRCRB4D	136853	genome.wustl.edu	37	7	76028047	76028047	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080744.1	-1	provisional	p.P181	0.899	288	0%	484	30.2%	0	-	-	-	-	NULL
DTX2	113878	genome.wustl.edu	37	7	76132882	76132882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102594.1	+1	validated	p.Y510F	1.000	36	0%	76	42.1%	44	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POMZP3	22932	genome.wustl.edu	37	7	76247632	76247632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000454397	-1	known	p.F176L	0.000	216	0%	261	20.3%	0	-	benign(0.131)	tolerated(0.35)	neutral(0.032)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76885680	76885680	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020879.2	+1	validated	p.E180*	1.000	50	0%	79	24.1%	0	-	-	-	-	NULL
PION	54103	genome.wustl.edu	37	7	77026703	77026703	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017439.3	-1	validated	p.Q91H	1.000	71	0%	21	23.8%	2	50%	unknown(0)	-	-	NULL
PTPN12	5782	genome.wustl.edu	37	7	77236596	77236596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002835.3	+1	reviewed	p.T247M	1.000	290	0%	199	29.1%	32	31.2%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN12	5782	genome.wustl.edu	37	7	77240104	77240104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002835.3	+1	reviewed	p.V262A	1.000	66	0%	50	40%	16	62.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN12	5782	genome.wustl.edu	37	7	77256956	77256956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002835.3	+1	reviewed	p.N654D	0.996	62	0%	35	42.9%	60	35%	benign(0)	tolerated(0.88)	-	NULL
RSBN1L	222194	genome.wustl.edu	37	7	77365774	77365774	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198467.2	+1	validated	p.E212*	0.991	146	0%	95	37.9%	4	0%	-	-	-	NULL
MAGI2	9863	genome.wustl.edu	37	7	77814974	77814974	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012301.3	-1	reviewed	p.R762fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_PDZ domain-like
MAGI2	9863	genome.wustl.edu	37	7	77824254	77824255	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012301.3	-1	reviewed	p.D735fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CD36	948	genome.wustl.edu	37	7	80292419	80292419	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000072.3	+1	reviewed	p.G181	0.993	355	0%	150	30%	2	0%	-	-	-	HMMPfam_CD36
CD36	948	genome.wustl.edu	37	7	80302711	80302711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000072.3	+1	reviewed	p.L414I	0.987	104	0%	41	29.3%	3	0%	benign(0.019)	deleterious(0.03)	neutral(0.365)	HMMPfam_CD36
HGF	3082	genome.wustl.edu	37	7	81339547	81339547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000601.4	-1	reviewed	p.S486Y	1.000	162	0%	62	30.6%	2	0%	possibly_damaging(0.834)	deleterious(0.02)	deleterious(0.701)	NULL
HGF	3082	genome.wustl.edu	37	7	81346675	81346675	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000601.4	-1	reviewed	p.I426	0.998	137	0%	96	26%	1	0%	-	-	-	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
HGF	3082	genome.wustl.edu	37	7	81372747	81372747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000601.4	-1	reviewed	p.P263S	1.000	68	0%	24	37.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like,PatternScan_KRINGLE_1
CACNA2D1	781	genome.wustl.edu	37	7	81591263	81591263	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000722.2	-1	reviewed	p.F971	1.000	167	0%	70	41.4%	1	0%	-	-	-	NULL
CACNA2D1	781	genome.wustl.edu	37	7	81636999	81636999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000722.2	-1	reviewed	p.L479S	0.990	119	0%	57	36.8%	0	-	benign(0.004)	tolerated(0.74)	neutral(0.002)	HMMPfam_Cache_1
PCLO	27445	genome.wustl.edu	37	7	82508666	82508666	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000426442	-1	known	p.G825E	1.000	254	0%	92	30.4%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PCLO	27445	genome.wustl.edu	37	7	82545312	82545312	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.F3997C	0.998	217	0%	141	28.4%	0	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	NULL
PCLO	27445	genome.wustl.edu	37	7	82545906	82545906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.R3799Q	0.994	299	0%	241	33.2%	2	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PCLO	27445	genome.wustl.edu	37	7	82579553	82579553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.D3451Y	1.000	239	0%	160	30%	1	100%	possibly_damaging(0.924)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82580472	82580472	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.F3144L	1.000	91	0%	53	34%	0	-	possibly_damaging(0.94)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82583642	82583642	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.V2209	0.996	143	0%	79	35.4%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82584511	82584511	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.E1920*	1.000	131	0%	79	35.4%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82585306	82585306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.E1655K	1.000	194	0%	122	34.4%	1	0%	probably_damaging(0.971)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82785548	82785548	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033026.5	-1	validated	p.E137*	1.000	155	0%	181	28.7%	0	-	-	-	-	NULL
SEMA3E	9723	genome.wustl.edu	37	7	82997293	82997293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012431.2	-1	reviewed	p.K646T	0.000	117	0%	149	34.2%	198	94.9%	benign(0.062)	tolerated(0.36)	neutral(0.024)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
SEMA3E	9723	genome.wustl.edu	37	7	83026004	83026004	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012431.2	-1	reviewed	p.E470*	1.000	238	0%	88	29.5%	63	3.1%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
SEMA3D	223117	genome.wustl.edu	37	7	84628806	84628806	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152754.2	-1	validated	p.R762*	0.745	262	0%	183	35.5%	3	66.6%	-	-	-	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84629133	84629133	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152754.2	-1	validated	p.R653*	1.000	108	0%	69	31.9%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
GRM3	2913	genome.wustl.edu	37	7	86469030	86469030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000840.2	+1	reviewed	p.D734Y	1.000	111	0%	59	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_3
KIAA1324L	222223	genome.wustl.edu	37	7	86537771	86537771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142749.2	-1	validated	p.F816L	1.000	259	0%	90	32.2%	0	-	possibly_damaging(0.792)	deleterious(0.01)	deleterious(0.703)	superfamily_Mannose 6-phosphate receptor domain
ABCB4	5244	genome.wustl.edu	37	7	87031541	87031541	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000440025	-1	known	p.E49*	1.000	158	0%	74	25.7%	13	0%	benign(0.412)	deleterious(0.04)	deleterious(0.482)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB4	5244	genome.wustl.edu	37	7	87082336	87082336	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018849.2	-1	reviewed	p.F154V	1.000	89	0%	45	33.3%	1	0%	benign(0.183)	deleterious(0.05)	neutral(0.362)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87168607	87168607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000927.3	-1	reviewed	p.V792I	1.000	78	0%	43	34.9%	12	50%	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87174212	87174212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000927.3	-1	reviewed	p.R664I	0.998	178	0%	121	29.8%	11	36.3%	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
ABCB1	5243	genome.wustl.edu	37	7	87180088	87180088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000927.3	-1	reviewed	p.A356S	1.000	176	0%	121	32.2%	7	57.1%	benign(0.002)	tolerated(0.24)	neutral(0.037)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87183085	87183085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000927.3	-1	reviewed	p.V331L	0.998	173	0%	84	22.6%	4	25%	benign(0.06)	tolerated(0.89)	neutral(0.004)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87229459	87229459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000927.3	-1	reviewed	p.K14N	0.046	208	0%	313	33.5%	7	42.8%	unknown(0)	-	-	NULL
ADAM22	53616	genome.wustl.edu	37	7	87757920	87757920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021723.2	+1	reviewed	p.R228C	0.998	194	0%	70	32.9%	0	-	possibly_damaging(0.905)	deleterious(0.04)	deleterious(0.708)	NULL
ADAM22	53616	genome.wustl.edu	37	7	87757921	87757921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021723.2	+1	reviewed	p.R228H	0.833	198	0%	72	26.4%	0	-	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
STEAP4	79689	genome.wustl.edu	37	7	87911932	87911932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000414498	-1	known	p.F336L	0.000	44	0%	25	28%	0	-	unknown(0)	-	-	NULL
STEAP4	79689	genome.wustl.edu	37	7	87912206	87912206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024636.2	-1	validated	p.R245L	0.959	103	0%	50	34%	0	-	possibly_damaging(0.848)	deleterious(0.02)	deleterious(0.709)	NULL
STEAP2	261729	genome.wustl.edu	37	7	89854884	89854884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040665.1	+1	reviewed	p.R163Q	1.000	45	0%	21	28.6%	6	16.6%	benign(0.4)	deleterious(0.02)	deleterious(0.512)	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
GTPBP10	85865	genome.wustl.edu	37	7	89982285	89982285	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033107.2	+1	validated	p.P63	0.995	207	0%	175	30.3%	10	20%	-	-	-	HMMPfam_GTP1_OBG,superfamily_Obg GTP-binding protein N-terminal domain
CLDN12	9069	genome.wustl.edu	37	7	90042576	90042576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012129.3	+1	validated	p.Y196H	1.000	100	0%	65	43.1%	21	47.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MTERF	7978	genome.wustl.edu	37	7	91509378	91509378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006980.3	-1	validated	p.G7E	0.143	86	0%	128	39.1%	6	0%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91631434	91631434	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005751.4	+1	reviewed	p.E735*	1.000	26	0%	16	25%	0	-	-	-	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91667978	91667978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005751.4	+1	reviewed	p.I1528M	0.020	62	0%	38	31.6%	2	50%	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91775510	91775510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430130	-1	known	p.K761N	1.000	255	0.4%	369	29.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91779857	91779857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430130	-1	known	p.E757*	1.000	212	0%	243	28.4%	0	-	-	-	-	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91779988	91779988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430130	-1	known	p.P713H	0.998	137	0%	132	29.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
ENSG00000240720	0	genome.wustl.edu	37	7	91788385	91788385	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430130	-1	known	p.N684H	1.000	279	0%	160	25.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
ENSG00000240720	0	genome.wustl.edu	37	7	91793289	91793289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430130	-1	known	p.L410I	0.976	96	0%	55	30.9%	0	-	possibly_damaging(0.553)	tolerated(0.06)	deleterious(0.511)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
KRIT1	889	genome.wustl.edu	37	7	91864219	91864219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004912.3	-1	reviewed	p.N250H	1.000	248	0%	173	31.8%	5	40%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PEX1	5189	genome.wustl.edu	37	7	92147349	92147349	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000466.2	-1	reviewed	p.L160	0.003	81	0%	41	34.1%	6	50%	-	-	-	superfamily_ADC-like,HMMPfam_PEX-1N
SAMD9	54809	genome.wustl.edu	37	7	92733472	92733472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017654.2	-1	validated	p.D647Y	0.998	130	0%	86	25.6%	0	-	possibly_damaging(0.677)	deleterious(0.02)	deleterious(0.624)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92734978	92734978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017654.2	-1	validated	p.D145Y	0.002	272	0%	269	27.1%	0	-	possibly_damaging(0.896)	deleterious(0.01)	deleterious(0.759)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92735165	92735165	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017654.2	-1	validated	p.S82	0.000	296	0%	303	26.1%	2	0%	-	-	-	superfamily_SAM_homology
SAMD9L	219285	genome.wustl.edu	37	7	92761792	92761792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152703.2	-1	validated	p.E1165K	0.658	80	0%	13	38.5%	13	38.4%	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92762824	92762824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152703.2	-1	validated	p.V821I	0.000	103	0%	34	23.5%	9	22.2%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763219	92763219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152703.2	-1	validated	p.R689Q	1.000	60	0%	18	27.8%	8	12.5%	probably_damaging(0.988)	tolerated(0.06)	deleterious(0.760)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764177	92764177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152703.2	-1	validated	p.L370V	0.004	106	0%	49	40.8%	5	40%	benign(0.052)	tolerated(0.08)	neutral(0.303)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764442	92764442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152703.2	-1	validated	p.K281N	0.806	65	0%	24	41.7%	6	0%	possibly_damaging(0.839)	deleterious(0.01)	deleterious(0.726)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92764617	92764617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152703.2	-1	validated	p.R223Q	1.000	116	0%	47	40.4%	16	37.5%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
HEPACAM2	253012	genome.wustl.edu	37	7	92826831	92826831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039372.1	-1	provisional	p.L369I	0.471	149	0%	43	34.9%	1	100%	possibly_damaging(0.873)	deleterious(0.04)	deleterious(0.688)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92861797	92861797	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017667.2	+1	validated	p.S6Y	1.000	73	0%	32	18.8%	1	100%	benign(0.303)	deleterious(0)	deleterious(0.538)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92935205	92935205	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000458707	+1	known	p.L293R	0.008	140	0%	72	29.2%	18	61.1%	-	-	-	NULL
CCDC132	55610	genome.wustl.edu	37	7	92983000	92983000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017667.2	+1	validated	p.R838C	1.000	194	0.5%	106	31.1%	40	40%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	HMMPfam_DUF2451
COL1A2	1278	genome.wustl.edu	37	7	94029532	94029532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000089.3	+1	reviewed	p.D53Y	1.000	77	0%	108	18.5%	138	0%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
COL1A2	1278	genome.wustl.edu	37	7	94041910	94041910	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000089.3	+1	reviewed	p.I473	0.004	57	0%	57	35.1%	156	0%	-	-	-	HMMPfam_Collagen
COL1A2	1278	genome.wustl.edu	37	7	94044541	94044541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000089.3	+1	reviewed	p.L575I	1.000	362	0%	264	31.1%	154	0%	unknown(0)	tolerated(0.55)	-	HMMPfam_Collagen
COL1A2	1278	genome.wustl.edu	37	7	94052354	94052354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000089.3	+1	reviewed	p.R830Q	1.000	111	0%	82	29.3%	282	0%	unknown(0)	tolerated(0.12)	-	HMMPfam_Collagen
CASD1	64921	genome.wustl.edu	37	7	94164638	94164638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022900.4	+1	validated	p.L216I	0.598	106	0%	42	38.1%	5	40%	benign(0.006)	tolerated(0.18)	neutral(0.056)	NULL
PEG10	23089	genome.wustl.edu	37	7	94293414	94293414	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040152.1	+1	reviewed	p.I182	0.009	33	0%	66	28.8%	1	0%	-	-	-	HMMPfam_Retrotrans_gag
PPP1R9A	55607	genome.wustl.edu	37	7	94919498	94919498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017650.2	+1	validated	p.E1060D	1.000	139	0%	74	25.7%	7	71.4%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
PON3	5446	genome.wustl.edu	37	7	95023989	95023989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000940.2	-1	reviewed	p.E38K	0.688	121	0%	216	28.7%	0	-	benign(0.002)	tolerated(0.21)	neutral(0.044)	superfamily_Calcium-dependent phosphotriesterase
DYNC1I1	1780	genome.wustl.edu	37	7	95662061	95662061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004411.4	+1	validated	p.S417F	1.000	218	0%	60	40%	0	-	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ACN9	57001	genome.wustl.edu	37	7	96810337	96810337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020186.2	+1	validated	p.A63V	0.228	124	0%	125	27.2%	99	31.3%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_ACN9
TAC1	6863	genome.wustl.edu	37	7	97364151	97364151	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003182.2	+1	reviewed	p.I93	0.929	80	0%	151	31.1%	2	0%	-	-	-	NULL
ASNS	440	genome.wustl.edu	37	7	97482428	97482428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001673.4	-1	reviewed	p.I474L	0.388	89	0%	58	15.5%	115	30.4%	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_SSF52402
LMTK2	22853	genome.wustl.edu	37	7	97766742	97766742	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014916.3	+1	reviewed	p.E73D	1.000	120	0%	74	33.8%	2	50%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	NULL
BAIAP2L1	55971	genome.wustl.edu	37	7	97939785	97939785	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018842.4	-1	reviewed	p.P309	0.018	173	0%	194	37.6%	18	72.2%	-	-	-	NULL
TRRAP	8295	genome.wustl.edu	37	7	98529082	98529082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003496.2	+1	validated	p.R1216W	1.000	45	0%	34	23.5%	10	40%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98533284	98533284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003496.2	+1	validated	p.R1366Q	1.000	144	0%	154	31.2%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98565207	98565207	+	Nonsense_Mutation	SNP	C	C	A	rs139721649		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000456197	+1	known	p.S2181*	0.896	53	0%	55	29.1%	15	46.6%	probably_damaging(0.989)	tolerated(0.17)	deleterious(0.498)	superfamily_ARM repeat
TRRAP	8295	genome.wustl.edu	37	7	98581920	98581920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003496.2	+1	validated	p.R3051Q	1.000	75	0%	79	30.4%	48	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like
TRRAP	8295	genome.wustl.edu	37	7	98609882	98609882	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000456197	+1	known	p.S3557L	0.502	48	0%	83	27.7%	105	48.5%	-	-	-	HMMSmart_SM00146
SMURF1	57154	genome.wustl.edu	37	7	98645414	98645414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020429.1	-1	reviewed	p.E375K	1.000	105	0%	101	25.7%	14	35.7%	benign(0)	tolerated(1)	-	NULL
KPNA7	402569	genome.wustl.edu	37	7	98775622	98775622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145715.1	-1	validated	p.R462K	0.721	215	0%	146	37.7%	0	-	benign(0)	tolerated(1)	-	superfamily_ARM-type_fold
KPNA7	402569	genome.wustl.edu	37	7	98775681	98775681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145715.1	-1	validated	p.E442D	0.995	139	0%	117	31.6%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	superfamily_ARM-type_fold
ARPC1B	10095	genome.wustl.edu	37	7	98988709	98988709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005720.2	+1	reviewed	p.D232N	0.259	35	0%	73	11%	447	2.6%	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_WD40 repeat-like
FAM200A	221786	genome.wustl.edu	37	7	99145599	99145599	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145111.2	-1	validated	p.L144	0.798	108	0%	169	32%	12	58.3%	-	-	-	NULL
FAM200A	221786	genome.wustl.edu	37	7	99145681	99145681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145111.2	-1	validated	p.R117H	0.998	138	0%	194	29.4%	6	0%	benign(0.371)	tolerated(0.25)	neutral(0.155)	NULL
ZNF655	79027	genome.wustl.edu	37	7	99161622	99161622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085367.1	+1	reviewed	p.K162N	0.999	146	0.7%	142	27.5%	18	5.5%	unknown(0)	deleterious(0.02)	-	NULL
CYP3A5	1577	genome.wustl.edu	37	7	99250280	99250280	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000777.2	-1	reviewed	p.I383	0.904	205	0%	98	29.6%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP3A7	1551	genome.wustl.edu	37	7	99306675	99306675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000765.3	-1	reviewed	p.E412D	0.955	189	0%	61	21.3%	1	0%	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP3A7	1551	genome.wustl.edu	37	7	99332677	99332677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000765.3	-1	reviewed	p.L14I	0.005	182	0%	87	43.7%	0	-	possibly_damaging(0.533)	deleterious(0.01)	deleterious(0.586)	NULL
CYP3A43	64816	genome.wustl.edu	37	7	99441836	99441836	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022820.3	+1	reviewed	p.E97*	1.000	151	0%	70	28.6%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
ZKSCAN1	7586	genome.wustl.edu	37	7	99631261	99631261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003439.1	+1	validated	p.R378I	0.029	132	0%	96	35.4%	19	47.3%	benign(0.039)	deleterious(0.05)	neutral(0.347)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TAF6	6878	genome.wustl.edu	37	7	99708886	99708886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005641.2	-1	reviewed	p.R320Q	1.000	151	0%	219	28.3%	76	40.7%	possibly_damaging(0.927)	deleterious(0.03)	deleterious(0.740)	HMMPfam_DUF1546
TAF6	6878	genome.wustl.edu	37	7	99711818	99711818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005641.2	-1	reviewed	p.K5N	1.000	83	0%	159	40.3%	36	36.1%	benign(0.15)	tolerated(0.36)	neutral(0.033)	NULL
GPC2	221914	genome.wustl.edu	37	7	99768019	99768019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152742.1	-1	provisional	p.R525Q	0.995	40	0%	79	26.6%	0	-	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	HMMPfam_Glypican
PILRB	29990	genome.wustl.edu	37	7	99956426	99956426	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013440.3	+1	reviewed	p.E60*	0.000	130	0%	214	30.8%	61	52.4%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MEPCE	56257	genome.wustl.edu	37	7	100028961	100028961	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019606.4	+1	provisional	p.E440	1.000	89	0%	164	32.9%	57	45.6%	-	-	-	superfamily_SSF53335
MEPCE	56257	genome.wustl.edu	37	7	100030735	100030735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019606.4	+1	provisional	p.S622L	0.843	41	0%	75	17.3%	68	36.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bin3,superfamily_SSF53335
TSC22D4	81628	genome.wustl.edu	37	7	100075294	100075294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030935.3	-1	provisional	p.S123Y	0.868	15	0%	25	36%	38	36.8%	possibly_damaging(0.887)	deleterious(0)	deleterious(0.791)	NULL
AGFG2	3268	genome.wustl.edu	37	7	100148030	100148030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006076.4	+1	reviewed	p.K109N	1.000	264	0%	194	36.6%	21	42.8%	possibly_damaging(0.598)	tolerated(0.08)	deleterious(0.507)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
FBXO24	26261	genome.wustl.edu	37	7	100187830	100187830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033506.2	+1	reviewed	p.D58N	1.000	49	0%	79	36.7%	0	-	benign(0.366)	deleterious(0)	deleterious(0.561)	HMMPfam_F-box,HMMSmart_SM00256,superfamily_F-box domain
PCOLCE	5118	genome.wustl.edu	37	7	100205145	100205145	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002593.3	+1	reviewed	p.L337	0.984	172	0%	275	32.4%	375	40%	-	-	-	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
ACTL6B	51412	genome.wustl.edu	37	7	100253132	100253132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016188.4	-1	reviewed	p.K60N	1.000	132	0%	235	34%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
GNB2	2783	genome.wustl.edu	37	7	100275169	100275169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005273.3	+1	reviewed	p.A106T	1.000	27	0%	49	34.7%	483	40.1%	benign(0.276)	deleterious(0)	deleterious(0.474)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GIGYF1	64599	genome.wustl.edu	37	7	100280938	100280938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022574.4	-1	validated	p.R728W	1.000	55	1.8%	76	21.1%	63	26.9%	unknown(0)	deleterious(0.01)	-	NULL
POP7	10248	genome.wustl.edu	37	7	100304659	100304659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005837.2	+1	validated	p.I69T	1.000	39	0%	60	33.3%	127	40.1%	possibly_damaging(0.677)	deleterious(0.01)	deleterious(0.647)	HMMPfam_Alba,superfamily_AlbA-like
ZAN	7455	genome.wustl.edu	37	7	100364782	100364782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003386.1	+1	reviewed	p.E1588K	0.941	50	0%	57	31.6%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_VWD,HMMSmart_SM00216
ZAN	7455	genome.wustl.edu	37	7	100373124	100373124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003386.1	+1	reviewed	p.L1985F	0.014	49	0%	68	20.6%	0	-	unknown(0)	tolerated(0.81)	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100382413	100382413	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003386.1	+1	reviewed	p.E2264*	0.014	84	0%	91	37.4%	0	-	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100385679	100385679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003386.1	+1	reviewed	p.G2383*	0.000	51	0%	95	10.5%	0	-	-	-	-	NULL
EPHB4	2050	genome.wustl.edu	37	7	100401164	100401164	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004444.4	-1	reviewed	p.I961	1.000	91	0%	72	29.2%	23	60.8%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
SLC12A9	56996	genome.wustl.edu	37	7	100463379	100463379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020246.2	+1	validated	p.D633N	1.000	37	0%	66	45.5%	37	35.1%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
SLC12A9	56996	genome.wustl.edu	37	7	100463561	100463561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020246.2	+1	validated	p.M693I	1.000	13	0%	29	31%	11	27.2%	possibly_damaging(0.867)	tolerated(0.07)	deleterious(0.655)	NULL
TRIP6	7205	genome.wustl.edu	37	7	100468075	100468075	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429658	+1	known	p.G47V	1.000	105	0%	131	27.5%	68	4.4%	-	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100645678	100645678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000379442	+1	known	p.R4088I	0.000	702	0%	727	11.4%	0	-	probably_damaging(0.979)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100655679	100655679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000379442	+1	known	p.K5261N	0.018	99	0%	142	26.8%	0	-	benign(0.099)	-	-	HMMPfam_SEA,HMMSmart_SEA
MUC17	140453	genome.wustl.edu	37	7	100674936	100674936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040105.1	+1	provisional	p.R80K	0.000	102	0%	87	32.2%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100684662	100684662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040105.1	+1	provisional	p.P3322L	0.001	247	0%	162	21%	0	-	probably_damaging(0.997)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100684724	100684724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040105.1	+1	provisional	p.T3343A	0.008	209	0%	160	34.4%	0	-	possibly_damaging(0.857)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100684831	100684831	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040105.1	+1	provisional	p.S3378	0.000	225	0%	167	30.5%	0	-	-	-	-	NULL
TRIM56	81844	genome.wustl.edu	37	7	100732537	100732537	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030961.1	+1	provisional	p.F648	0.018	124	0.8%	203	29.6%	5	20%	-	-	-	superfamily_NHL repeat
MOGAT3	346606	genome.wustl.edu	37	7	100841522	100841522	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178176.2	-1	provisional	p.C206	0.000	18	0%	32	18.8%	0	-	-	-	-	HMMPfam_DAGAT
PLOD3	8985	genome.wustl.edu	37	7	100853821	100853821	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001084.4	-1	reviewed	p.R498*	0.594	65	0%	111	29.7%	42	0%	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101840066	101840066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181552.2	+1	reviewed	p.D459Y	1.000	54	0%	99	23.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CUX1	1523	genome.wustl.edu	37	7	101845354	101845354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181552.2	+1	reviewed	p.S926L	0.995	102	0%	156	29.5%	10	40%	probably_damaging(0.98)	tolerated(0.12)	deleterious(0.684)	NULL
ORAI2	80228	genome.wustl.edu	37	7	102087064	102087064	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001126340.1	+1	validated	p.F110	0.987	46	0%	64	31.2%	39	30.7%	-	-	-	HMMPfam_DUF1650
LRWD1	222229	genome.wustl.edu	37	7	102110226	102110226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152892.1	+1	provisional	p.R447C	1.000	49	0%	74	32.4%	49	36.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_WD40_like
PMPCB	9512	genome.wustl.edu	37	7	102950918	102950918	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004279.2	+1	reviewed	p.E384*	1.000	84	0%	48	37.5%	104	15.3%	-	-	-	HMMPfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd
DNAJC2	27000	genome.wustl.edu	37	7	102964096	102964096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014377.1	-1	reviewed	p.S223Y	1.000	131	0%	87	31%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC26A5	375611	genome.wustl.edu	37	7	103050942	103050942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198999.2	-1	reviewed	p.L209M	0.855	93	0%	37	45.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfate_transp
RELN	5649	genome.wustl.edu	37	7	103131232	103131232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005045.3	-1	reviewed	p.S3163F	1.000	150	0%	100	25%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RELN	5649	genome.wustl.edu	37	7	103180737	103180737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005045.3	-1	reviewed	p.E2279D	0.999	36	0%	22	45.5%	0	-	possibly_damaging(0.74)	tolerated(0.55)	neutral(0.278)	NULL
RELN	5649	genome.wustl.edu	37	7	103243781	103243781	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005045.3	-1	reviewed	p.I1101	1.000	93	0%	42	26.2%	0	-	-	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103276841	103276841	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005045.3	-1	reviewed	p.F715C	1.000	72	0%	37	40.5%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
MLL5	55904	genome.wustl.edu	37	7	104715207	104715207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018682.3	+1	reviewed	p.D225A	1.000	122	0%	111	30.6%	13	53.8%	benign(0.394)	tolerated(0.21)	neutral(0.170)	NULL
MLL5	55904	genome.wustl.edu	37	7	104748331	104748331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018682.3	+1	reviewed	p.D1143N	0.999	57	0%	22	36.4%	28	28.5%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
MLL5	55904	genome.wustl.edu	37	7	104752568	104752568	+	Silent	SNP	G	G	A	rs181236443	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018682.3	+1	reviewed	p.T1455	0.987	129	0%	145	26.2%	79	24%	-	-	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104753135	104753135	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018682.3	+1	reviewed	p.P1644	0.588	137	0%	99	41.4%	74	40.5%	-	-	-	NULL
EFCAB10	100130771	genome.wustl.edu	37	7	105205682	105205682	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_027068.1	-1	predicted	NULL	0.000	56	0%	34	29.4%	0	-	-	-	-	-
SYPL1	6856	genome.wustl.edu	37	7	105733502	105733502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006754.2	-1	validated	p.I180L	0.002	83	0%	34	41.2%	82	36.5%	benign(0.156)	tolerated(0.64)	neutral(0.017)	HMMPfam_MARVEL
NAMPT	10135	genome.wustl.edu	37	7	105915425	105915425	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005746.2	-1	reviewed	p.V95	1.000	284	0%	262	34.7%	24	45.8%	-	-	-	NULL
PIK3CG	5294	genome.wustl.edu	37	7	106509544	106509544	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002649.2	+1	reviewed	p.S513*	1.000	118	0%	229	36.2%	4	0%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PIK3CG	5294	genome.wustl.edu	37	7	106509911	106509911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002649.2	+1	reviewed	p.F635L	1.000	39	0%	76	35.5%	2	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_ARM repeat
DUS4L	11062	genome.wustl.edu	37	7	107215724	107215724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181581.1	+1	validated	p.T150A	0.999	118	0%	156	23.7%	6	50%	benign(0.001)	tolerated(0.85)	neutral(0.001)	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases
BCAP29	55973	genome.wustl.edu	37	7	107258918	107258918	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008405.2	+1	validated	p.F305L	0.012	73	0%	26	30.8%	4	50%	unknown(0)	-	-	NULL
SLC26A3	1811	genome.wustl.edu	37	7	107414595	107414595	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000111.2	-1	reviewed	p.G593*	1.000	209	0%	106	44.3%	0	-	-	-	-	HMMPfam_STAS,superfamily_STAS
SLC26A3	1811	genome.wustl.edu	37	7	107415298	107415298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000111.2	-1	reviewed	p.R566Q	1.000	170	0%	80	32.5%	0	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	HMMPfam_STAS,superfamily_STAS
SLC26A3	1811	genome.wustl.edu	37	7	107430065	107430065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000111.2	-1	reviewed	p.F213L	1.000	66	1.5%	54	31.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sulfate_transp
SLC26A3	1811	genome.wustl.edu	37	7	107434232	107434232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000111.2	-1	reviewed	p.D76Y	1.000	93	0%	58	39.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LAMB1	3912	genome.wustl.edu	37	7	107569535	107569535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002291.2	-1	reviewed	p.Q1621K	1.000	273	0%	189	30.2%	72	23.6%	benign(0)	tolerated(0.86)	neutral(0.001)	superfamily_Prefoldin
LAMB1	3912	genome.wustl.edu	37	7	107593977	107593977	+	Missense_Mutation	SNP	C	C	T	rs193010498	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002291.2	-1	reviewed	p.R1026Q	0.991	75	0%	73	68.5%	52	78.8%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin
DNAJB9	4189	genome.wustl.edu	37	7	108213486	108213486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012328.1	+1	provisional	p.D121Y	1.000	212	0.5%	265	28.3%	16	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Chaperone J-domain
IMMP2L	83943	genome.wustl.edu	37	7	110526659	110526659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032549.2	-1	provisional	p.S133Y	1.000	165	0%	70	31.4%	17	29.4%	benign(0.055)	tolerated(0.11)	neutral(0.275)	superfamily_LexA/Signal peptidase
DOCK4	9732	genome.wustl.edu	37	7	111517199	111517199	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014705.3	-1	reviewed	p.K544T	1.000	199	0%	119	26.1%	0	-	possibly_damaging(0.616)	tolerated(0.52)	neutral(0.223)	NULL
DOCK4	9732	genome.wustl.edu	37	7	111580280	111580280	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014705.3	-1	reviewed	p.E288*	1.000	203	0%	133	31.6%	0	-	-	-	-	NULL
DOCK4	9732	genome.wustl.edu	37	7	111585848	111585848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014705.3	-1	reviewed	p.R236I	1.000	80	0%	29	44.8%	0	-	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	NULL
ZNF277	11179	genome.wustl.edu	37	7	111982764	111982764	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021994.2	+1	validated	p.L445V	0.997	47	0%	22	27.3%	24	41.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
IFRD1	3475	genome.wustl.edu	37	7	112096972	112096972	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007245.1	+1	validated	p.A96	0.360	150	0%	153	32.7%	39	33.3%	-	-	-	HMMPfam_IFRD,superfamily_ARM repeat
ENSG00000247285	0	genome.wustl.edu	37	7	112723647	112723647	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501255	+1	novel	NULL	1.000	34	0%	33	30.3%	1	0%	-	-	-	-
PPP1R3A	5506	genome.wustl.edu	37	7	113517798	113517798	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002711.3	-1	reviewed	p.E1117*	1.000	110	0%	56	19.6%	0	-	-	-	-	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113518717	113518717	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002711.3	-1	reviewed	p.C810	1.000	161	0%	81	24.7%	0	-	-	-	-	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113519786	113519786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002711.3	-1	reviewed	p.P454H	0.000	71	0%	37	27%	0	-	benign(0.267)	deleterious(0)	deleterious(0.473)	NULL
PPP1R3A	5506	genome.wustl.edu	37	7	113558830	113558830	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002711.3	-1	reviewed	p.L74	1.000	83	0%	27	33.3%	0	-	-	-	-	NULL
FOXP2	93986	genome.wustl.edu	37	7	114299433	114299433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148898.2	+1	reviewed	p.F522L	1.000	131	0%	36	30.6%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
MDFIC	29969	genome.wustl.edu	37	7	114582432	114582432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000393486	+1	known	p.S66L	0.059	75	0%	45	22.2%	8	25%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	NULL
MET	4233	genome.wustl.edu	37	7	116339777	116339777	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127500.1	+1	reviewed	p.S213	0.000	124	0%	39	15.4%	5	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
MET	4233	genome.wustl.edu	37	7	116436064	116436064	+	Silent	SNP	C	C	T	rs45571634		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127500.1	+1	reviewed	p.N1371	0.103	105	0%	56	32.1%	20	65%	-	-	-	superfamily_Kinase_like
ASZ1	136991	genome.wustl.edu	37	7	117022133	117022133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130768.2	-1	validated	p.D293G	1.000	123	0%	40	42.5%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	superfamily_SAM_homology,HMMPfam_SAM_2
CFTR	1080	genome.wustl.edu	37	7	117267694	117267694	+	Nonsense_Mutation	SNP	C	C	A	rs121908763		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000492.3	+1	reviewed	p.S1196*	0.003	73	0%	18	38.9%	0	-	-	-	-	NULL
CTTNBP2	83992	genome.wustl.edu	37	7	117407167	117407167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033427.2	-1	reviewed	p.R948W	1.000	121	0%	59	11.9%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ankyrin repeat
CTTNBP2	83992	genome.wustl.edu	37	7	117431532	117431532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033427.2	-1	reviewed	p.S573L	1.000	148	0%	164	33.5%	2	50%	benign(0.196)	deleterious(0)	neutral(0.463)	HMMPfam_CortBP2
ANKRD7	56311	genome.wustl.edu	37	7	117864887	117864887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019644.3	+1	validated	p.M1I	1.000	47	0%	38	34.2%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
ANKRD7	56311	genome.wustl.edu	37	7	117880030	117880030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000417525	+1	known	p.G206V	0.000	132	0%	215	34.9%	0	-	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
KCND2	3751	genome.wustl.edu	37	7	119915425	119915425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012281.2	+1	reviewed	p.R247C	1.000	122	0%	197	30.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
C7orf58	79974	genome.wustl.edu	37	7	120780976	120780976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024913.4	+1	validated	p.E599K	1.000	71	0%	27	33.3%	5	60%	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652176	121652176	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002851.2	+1	reviewed	p.E1026*	1.000	132	0%	47	27.7%	0	-	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652624	121652624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002851.2	+1	reviewed	p.S1175Y	0.999	197	0%	152	34.9%	0	-	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652924	121652924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002851.2	+1	reviewed	p.K1275T	0.517	98	0%	34	23.5%	0	-	possibly_damaging(0.489)	deleterious(0)	deleterious(0.607)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121653197	121653197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002851.2	+1	reviewed	p.S1366Y	0.713	147	0%	69	33.3%	0	-	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121679559	121679559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002851.2	+1	reviewed	p.F1852V	0.980	133	0%	82	32.9%	0	-	possibly_damaging(0.637)	tolerated(0.26)	neutral(0.257)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
AASS	10157	genome.wustl.edu	37	7	121766507	121766507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005763.3	-1	reviewed	p.R132C	1.000	253	0%	105	30.5%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AlaDh_PNT_N,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
CADPS2	93664	genome.wustl.edu	37	7	122033277	122033277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017954.10	-1	reviewed	p.S994L	1.000	80	0%	67	23.9%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
SLC13A1	6561	genome.wustl.edu	37	7	122759259	122759259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022444.3	-1	validated	p.S463Y	0.997	136	0%	79	29.1%	0	-	benign(0.223)	tolerated(0.37)	neutral(0.041)	HMMPfam_Na_sulph_symp
LMOD2	442721	genome.wustl.edu	37	7	123296065	123296065	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207163.1	+1	validated	p.I16	0.942	32	0%	16	62.5%	0	-	-	-	-	NULL
LMOD2	442721	genome.wustl.edu	37	7	123302625	123302625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207163.1	+1	validated	p.L329M	0.981	43	0%	16	43.8%	0	-	benign(0.195)	deleterious(0)	neutral(0.463)	HMMPfam_Tropomodulin,superfamily_RNI-like
LMOD2	442721	genome.wustl.edu	37	7	123302777	123302777	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207163.1	+1	validated	p.V379	1.000	74	0%	50	30%	0	-	-	-	-	NULL
WASL	8976	genome.wustl.edu	37	7	123334886	123334886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003941.2	-1	reviewed	p.D237N	1.000	149	0%	198	33.8%	16	56.2%	benign(0.144)	tolerated(0.52)	neutral(0.021)	HMMPfam_PBD,HMMSmart_PBD,superfamily_WASP_C
TMEM229A	730130	genome.wustl.edu	37	7	123672024	123672024	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136002.1	-1	validated	p.F345C	1.000	32	0%	70	34.3%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
TMEM229A	730130	genome.wustl.edu	37	7	123672325	123672325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136002.1	-1	validated	p.L245I	1.000	24	0%	54	31.5%	0	-	benign(0.232)	tolerated(0.1)	neutral(0.309)	NULL
POT1	25913	genome.wustl.edu	37	7	124491994	124491994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015450.2	-1	reviewed	p.S294Y	0.996	87	0%	65	36.9%	15	53.3%	probably_damaging(0.99)	tolerated(0.31)	deleterious(0.469)	NULL
GCC1	79571	genome.wustl.edu	37	7	127222277	127222277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024523.5	-1	reviewed	p.E707K	0.926	219	0%	283	32.2%	20	50%	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
FSCN3	29999	genome.wustl.edu	37	7	127235549	127235549	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020369.1	+1	provisional	p.I111	0.583	104	0%	97	37.1%	0	-	-	-	-	superfamily_Actin_crosslink,HMMPfam_Fascin
FSCN3	29999	genome.wustl.edu	37	7	127235810	127235810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020369.1	+1	provisional	p.F198L	0.995	165	0%	175	32.6%	1	100%	probably_damaging(0.974)	tolerated(0.17)	deleterious(0.475)	superfamily_Actin_crosslink
PRRT4	401399	genome.wustl.edu	37	7	127992669	127992669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114726.2	-1	validated	p.S314L	0.028	168	0%	306	29.7%	0	-	benign(0.362)	deleterious(0.01)	deleterious(0.521)	NULL
PRRT4	401399	genome.wustl.edu	37	7	127999462	127999462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114726.2	-1	validated	p.R195Q	0.636	42	0%	58	25.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FLNC	2318	genome.wustl.edu	37	7	128471031	128471031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001458.4	+1	reviewed	p.L114F	1.000	14	0%	28	53.6%	1	0%	possibly_damaging(0.622)	deleterious(0.01)	deleterious(0.623)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
FLNC	2318	genome.wustl.edu	37	7	128477557	128477557	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001458.4	+1	reviewed	p.R269*	0.990	107	0%	200	29.5%	0	-	-	-	-	NULL
FLNC	2318	genome.wustl.edu	37	7	128490963	128490963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001458.4	+1	reviewed	p.Q1835H	1.000	44	0%	53	32.1%	2	0%	benign(0.002)	tolerated(0.34)	neutral(0.023)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNC	2318	genome.wustl.edu	37	7	128494583	128494583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001458.4	+1	reviewed	p.E2282K	1.000	26	0%	34	35.3%	6	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
TNPO3	23534	genome.wustl.edu	37	7	128597314	128597314	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012470.2	-1	validated	p.R923*	1.000	141	0%	139	30.9%	65	46.1%	-	-	-	NULL
TNPO3	23534	genome.wustl.edu	37	7	128622338	128622338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012470.2	-1	validated	p.P608H	1.000	107	0%	60	33.3%	60	38.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM repeat
FAM40B	57464	genome.wustl.edu	37	7	129100212	129100212	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020704.2	+1	validated	p.L492*	0.999	79	0%	81	23.5%	8	25%	-	-	-	NULL
CPA5	93979	genome.wustl.edu	37	7	130002327	130002327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127441.1	+1	validated	p.I195L	0.998	68	0%	46	30.4%	0	-	benign(0.038)	deleterious(0.04)	neutral(0.351)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
ENSG00000245606	0	genome.wustl.edu	37	7	130008537	130008537	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501661	-1	known	NULL	0.001	36	0%	39	41%	0	-	-	-	-	-
MKLN1	4289	genome.wustl.edu	37	7	131130592	131130592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013255.4	+1	validated	p.F485L	1.000	388	0.3%	317	30.6%	14	64.2%	benign(0.054)	tolerated(0.25)	neutral(0.041)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
PLXNA4	91584	genome.wustl.edu	37	7	131859571	131859571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020911.1	-1	validated	p.G1328E	1.000	67	0%	79	34.2%	6	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Plexin_cytopl
PLXNA4	91584	genome.wustl.edu	37	7	131883320	131883320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020911.1	-1	validated	p.R888C	1.000	90	0%	74	33.8%	2	100%	possibly_damaging(0.456)	deleterious(0.01)	deleterious(0.555)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
EXOC4	60412	genome.wustl.edu	37	7	133689701	133689701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021807.3	+1	reviewed	p.K795N	1.000	111	0%	58	25.9%	21	23.8%	probably_damaging(0.959)	tolerated(0.23)	neutral(0.444)	NULL
AKR1B15	441282	genome.wustl.edu	37	7	134260641	134260641	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080538.2	+1	validated	p.V207	0.989	148	0%	49	32.7%	0	-	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
WDR91	29062	genome.wustl.edu	37	7	134878067	134878067	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014149.3	-1	validated	p.F525	0.000	57	0%	59	27.1%	42	42.8%	-	-	-	superfamily_WD40 repeat-like
WDR91	29062	genome.wustl.edu	37	7	134893731	134893731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014149.3	-1	validated	p.A108V	1.000	92	0%	127	17.3%	24	62.5%	benign(0.071)	tolerated(1)	neutral(0.005)	NULL
STRA8	346673	genome.wustl.edu	37	7	134925358	134925358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182489.1	+1	provisional	p.R50W	0.002	26	0%	52	17.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUP205	23165	genome.wustl.edu	37	7	135286123	135286123	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015135.2	+1	validated	p.E794*	1.000	203	0%	98	25.5%	15	20%	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135322737	135322737	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015135.2	+1	validated	p.K1732T	1.000	130	0%	105	27.6%	46	69.5%	possibly_damaging(0.743)	tolerated(0.22)	neutral(0.315)	NULL
NUP205	23165	genome.wustl.edu	37	7	135329715	135329715	+	Missense_Mutation	SNP	C	C	T	rs192502338	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015135.2	+1	validated	p.R1878C	1.000	104	0%	71	32.4%	37	70.2%	possibly_damaging(0.922)	tolerated(0.14)	deleterious(0.621)	NULL
MTPN	136319	genome.wustl.edu	37	7	135661831	135661831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145808.3	-1	reviewed	p.F6L	1.000	179	0%	289	31.8%	67	41.7%	unknown(0)	deleterious(0)	-	superfamily_Ankyrin repeat
DGKI	9162	genome.wustl.edu	37	7	137170120	137170120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004717.2	-1	reviewed	p.Q809H	1.000	203	0%	127	27.6%	0	-	probably_damaging(0.979)	tolerated(0.08)	deleterious(0.722)	NULL
AKR1D1	6718	genome.wustl.edu	37	7	137798514	137798514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005989.2	+1	validated	p.L312F	0.995	131	0%	96	35.4%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_Aldo/ket_red
UBN2	254048	genome.wustl.edu	37	7	138964082	138964082	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173569.3	+1	validated	p.I598M	1.000	84	0%	47	31.9%	1	0%	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	NULL
LUC7L2	51631	genome.wustl.edu	37	7	139094358	139094358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016019.2	+1	validated	p.R246Q	1.000	71	0%	107	29%	73	41%	unknown(0)	deleterious(0.05)	-	HMMPfam_LUC7
HIPK2	28996	genome.wustl.edu	37	7	139416054	139416054	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000263551	-1	known	p.F260	0.998	88	0%	68	48.5%	8	25%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PARP12	64761	genome.wustl.edu	37	7	139757768	139757768	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022750.2	-1	provisional	p.G131	0.007	130	0.8%	186	28%	20	25%	-	-	-	NULL
SLC37A3	84255	genome.wustl.edu	37	7	140051927	140051927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207113.1	-1	validated	p.A213V	0.988	80	0%	113	34.5%	15	6.6%	benign(0.019)	tolerated(0.45)	neutral(0.013)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
DENND2A	27147	genome.wustl.edu	37	7	140257953	140257953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015689.3	-1	validated	p.R650Q	1.000	65	0%	93	28%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_uDENN,HMMSmart_SM00800
DENND2A	27147	genome.wustl.edu	37	7	140301593	140301593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015689.3	-1	validated	p.P202H	0.016	43	0%	22	27.3%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
DENND2A	27147	genome.wustl.edu	37	7	140301932	140301932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015689.3	-1	validated	p.R89I	0.000	252	0%	165	29.1%	5	20%	benign(0.028)	deleterious(0.01)	neutral(0.407)	NULL
ADCK2	90956	genome.wustl.edu	37	7	140373884	140373884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052853.3	+1	validated	p.E252K	0.005	50	0%	106	19.8%	22	18.1%	benign(0.071)	tolerated(0.09)	neutral(0.301)	HMMPfam_ABC1
BRAF	673	genome.wustl.edu	37	7	140439707	140439707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004333.4	-1	reviewed	p.L678I	1.000	102	0%	76	26.3%	4	75%	benign(0.03)	deleterious(0.02)	neutral(0.385)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TAS2R4	50832	genome.wustl.edu	37	7	141478827	141478827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016944.1	+1	reviewed	p.S180F	0.000	82	0%	89	36%	0	-	probably_damaging(0.959)	tolerated(0.18)	neutral(0.459)	HMMPfam_TAS2R,superfamily_SSF81321
OR9A4	130075	genome.wustl.edu	37	7	141618909	141618909	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001656.1	+1	provisional	p.P78	0.000	130	0%	97	24.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MGAM	8972	genome.wustl.edu	37	7	141708373	141708373	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004668.2	+1	reviewed	p.T65	0.000	146	0%	95	12.6%	0	-	-	-	-	NULL
MGAM	8972	genome.wustl.edu	37	7	141730197	141730197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004668.2	+1	reviewed	p.E419D	0.036	168	0%	84	25%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_Glyco_hydro_31
TRBV2	28620	genome.wustl.edu	37	7	142001133	142001133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000455382	+1	known	p.E42D	0.229	97	0%	45	42.2%	0	-	benign(0.008)	tolerated(1)	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV3-1	28619	genome.wustl.edu	37	7	142008727	142008727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390387	+1	known	p.S67N	0.000	116	0%	88	23.9%	0	-	possibly_damaging(0.749)	tolerated(0.32)	neutral(0.299)	HMMPfam_V-set,superfamily_SSF48726
TRBV4-1	28617	genome.wustl.edu	37	7	142013065	142013065	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390357	+1	known	p.V10	0.000	213	0%	89	24.7%	1	0%	-	-	-	NULL
TRBV5-1	28614	genome.wustl.edu	37	7	142021276	142021276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390381	+1	known	p.R86C	0.000	102	0%	52	36.5%	6	0%	benign(0.003)	deleterious(0)	neutral(0.445)	HMMPfam_V-set,superfamily_SSF48726
TRBV6-9	28598	genome.wustl.edu	37	7	142104187	142104187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390379	-1	known	p.F93S	0.008	162	0.6%	96	31.2%	0	-	possibly_damaging(0.891)	tolerated(0.06)	deleterious(0.673)	HMMPfam_V-set,superfamily_SSF48726
TRBV5-4	28611	genome.wustl.edu	37	7	142168605	142168605	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000454561	-1	known	p.L40	0.460	179	0%	109	26.6%	2	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV6-4	28603	genome.wustl.edu	37	7	142250813	142250813	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390360	-1	known	p.E78D	0.000	151	0%	50	26%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_V-set,superfamily_SSF48726
TRPV6	55503	genome.wustl.edu	37	7	142573596	142573596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018646.2	-1	validated	p.S275L	0.992	53	0%	74	28.4%	2	50%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	NULL
KEL	3792	genome.wustl.edu	37	7	142641467	142641467	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000420.2	-1	reviewed	p.E478	1.000	53	0%	38	23.7%	1	0%	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
KEL	3792	genome.wustl.edu	37	7	142651387	142651387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000420.2	-1	reviewed	p.E270*	0.000	113	0%	61	37.7%	0	-	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
TAS2R39	259285	genome.wustl.edu	37	7	142881026	142881026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176881.2	+1	provisional	p.H172R	0.000	162	0%	114	37.7%	0	-	benign(0.157)	tolerated(0.33)	neutral(0.038)	HMMPfam_TAS2R,superfamily_SSF81321
GSTK1	373156	genome.wustl.edu	37	7	142964766	142964766	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143679.1	+1	reviewed	p.I215	0.000	78	0%	90	25.6%	330	32.7%	-	-	-	HMMPfam_DSBA,superfamily_Thiordxn-like_fd
FAM115C	285966	genome.wustl.edu	37	7	143400173	143400173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130025.1	+1	validated	p.E29G	1.000	81	0%	85	18.8%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
OR2F1	26211	genome.wustl.edu	37	7	143657108	143657108	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012369.2	+1	provisional	p.L15	0.021	225	0.4%	165	36.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2A14	135941	genome.wustl.edu	37	7	143827022	143827022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001659.1	+1	provisional	p.L273I	0.434	138	0%	67	32.8%	0	-	benign(0.366)	tolerated(0.61)	neutral(0.121)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ARHGEF5	7984	genome.wustl.edu	37	7	144070324	144070324	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005435.3	+1	reviewed	p.R1363*	1.000	83	0%	87	48.3%	11	18.1%	-	-	-	superfamily_DBL homology domain (DH-domain)
MIR548F4	100313895	genome.wustl.edu	37	7	147075140	147075140	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000408515	-1	known	NULL	0.013	210	0%	67	37.3%	0	-	-	-	-	-
CNTNAP2	26047	genome.wustl.edu	37	7	147092834	147092834	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014141.5	+1	reviewed	p.F544	0.997	73	0%	35	28.6%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
CUL1	8454	genome.wustl.edu	37	7	148497617	148497617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003592.2	+1	validated	p.E758D	1.000	120	0%	176	31.2%	86	40.6%	benign(0.089)	tolerated(0.17)	neutral(0.066)	"PatternScan_CULLIN_1,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"
ZNF425	155054	genome.wustl.edu	37	7	148801175	148801175	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001661.2	-1	validated	p.Q596	0.105	57	0%	88	42%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF212	7988	genome.wustl.edu	37	7	148950701	148950701	+	Missense_Mutation	SNP	C	C	T	rs185003508	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012256.2	+1	reviewed	p.A228V	0.003	38	0%	54	25.9%	12	41.6%	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
ZNF746	155061	genome.wustl.edu	37	7	149191451	149191451	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152557.4	-1	validated	p.F56	0.585	184	0.5%	243	32.1%	13	23%	-	-	-	NULL
KRBA1	84626	genome.wustl.edu	37	7	149416738	149416738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000255992	+1	known	p.E3D	1.000	67	0%	110	32.7%	1	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
SSPO	23145	genome.wustl.edu	37	7	149502585	149502585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000378016	+1	known	p.R2800C	0.970	63	0%	97	28.9%	1	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NOS3	4846	genome.wustl.edu	37	7	150690936	150690936	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000603.4	+1	reviewed	p.C15	0.778	14	0%	17	41.2%	3	0%	-	-	-	NULL
NOS3	4846	genome.wustl.edu	37	7	150704236	150704236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000603.4	+1	reviewed	p.A662T	1.000	51	0%	82	34.1%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
ASIC3	9311	genome.wustl.edu	37	7	150747624	150747624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020321.2	+1	reviewed	p.P248S	0.991	43	0%	85	41.2%	6	50%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	HMMPfam_ASC
SLC4A2	6522	genome.wustl.edu	37	7	150767376	150767376	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003040.3	+1	validated	p.H464	0.288	46	0%	94	39.4%	96	44.7%	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
FASTK	10922	genome.wustl.edu	37	7	150775156	150775156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000297530	-1	known	p.L143I	0.996	48	0%	99	42.4%	115	40.8%	benign(0.013)	tolerated(0.13)	neutral(0.253)	NULL
FASTK	10922	genome.wustl.edu	37	7	150776649	150776649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006712.3	-1	reviewed	p.R148Q	1.000	53	0%	119	34.5%	107	42.9%	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	NULL
AGAP3	116988	genome.wustl.edu	37	7	150837107	150837107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031946.4	+1	validated	p.D570Y	1.000	34	0%	86	23.3%	32	50%	benign(0.007)	deleterious(0.01)	neutral(0.406)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ABCF2	10061	genome.wustl.edu	37	7	150923469	150923469	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005692.3	-1	reviewed	p.G26*	0.994	287	0%	472	34.7%	22	45.4%	-	-	-	NULL
CHPF2	54480	genome.wustl.edu	37	7	150935326	150935326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019015.1	+1	provisional	p.F626L	1.000	22	0%	40	20%	53	26.4%	possibly_damaging(0.941)	deleterious(0.01)	deleterious(0.792)	HMMPfam_CHGN
NUB1	51667	genome.wustl.edu	37	7	151071223	151071223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016118.3	+1	validated	p.R430I	0.001	66	0%	109	24.8%	64	39%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
GALNT11	63917	genome.wustl.edu	37	7	151807728	151807728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022087.2	+1	validated	p.R360W	1.000	241	0%	224	31.2%	60	36.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
MLL3	58508	genome.wustl.edu	37	7	151842334	151842334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170606.2	-1	reviewed	p.R4693Q	1.000	51	0%	40	25%	32	50%	unknown(0)	-	-	HMMPfam_FYRC,HMMSmart_SM00542
MLL3	58508	genome.wustl.edu	37	7	151846012	151846012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170606.2	-1	reviewed	p.R4334W	0.990	125	0%	67	34.3%	27	48.1%	unknown(0)	-	-	NULL
XRCC2	7516	genome.wustl.edu	37	7	152346208	152346208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005431.1	-1	reviewed	p.S121N	0.009	114	0%	78	29.5%	4	50%	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_P-loop containing nucleoside triphosphate hydrolases
XRCC2	7516	genome.wustl.edu	37	7	152346224	152346224	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005431.1	-1	reviewed	p.F116V	0.003	130	0%	89	30.3%	5	40%	benign(0)	tolerated(0.08)	neutral(0.300)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ACTR3B	57180	genome.wustl.edu	37	7	152517509	152517509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020445.4	+1	validated	p.E222D	1.000	146	0%	137	20.4%	10	10%	benign(0.399)	tolerated(0.18)	neutral(0.184)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DPP6	1804	genome.wustl.edu	37	7	154002608	154002608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000332007	+1	known	p.S10L	0.720	35	0%	90	34.4%	0	-	possibly_damaging(0.887)	tolerated(0.29)	neutral(0.376)	NULL
LMBR1	64327	genome.wustl.edu	37	7	156626447	156626447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022458.3	-1	reviewed	p.S60L	1.000	174	0%	89	31.5%	18	44.4%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_LMBR1
NOM1	64434	genome.wustl.edu	37	7	156743072	156743072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138400.1	+1	provisional	p.D214G	1.000	77	0%	106	19.8%	8	37.5%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
NOM1	64434	genome.wustl.edu	37	7	156759068	156759068	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138400.1	+1	provisional	p.K713T	1.000	117	0%	133	27.1%	14	35.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MA3,HMMSmart_MA3
UBE3C	9690	genome.wustl.edu	37	7	157000206	157000206	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014671.2	+1	validated	p.L511	0.979	256	0%	168	32.1%	30	26.6%	-	-	-	NULL
DNAJB6	10049	genome.wustl.edu	37	7	157155854	157155854	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058246.3	+1	reviewed	e2-1	0.999	97	0%	96	29.2%	0	-	-	-	-	-
PTPRN2	5799	genome.wustl.edu	37	7	157929367	157929367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002847.3	-1	reviewed	p.D385N	0.005	113	0.9%	224	27.7%	0	-	benign(0.312)	tolerated(0.06)	neutral(0.420)	NULL
ENSG00000186921	0	genome.wustl.edu	37	7	158415371	158415371	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000335132	-1	known	p.E101*	0.930	119	0%	101	26.7%	2	0%	-	-	-	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158437052	158437052	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441982	-1	known	p.R858K	0.937	239	0%	231	26%	60	45%	-	-	-	NULL
WDR60	55112	genome.wustl.edu	37	7	158726897	158726897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018051.4	+1	validated	p.H875R	1.000	210	0.5%	319	26.6%	17	47%	benign(0.064)	deleterious(0.01)	neutral(0.410)	superfamily_WD40 repeat-like
ARHGEF10	9639	genome.wustl.edu	37	8	1851515	1851515	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014629.2	+1	reviewed	p.L573	0.958	39	0%	96	39.6%	10	50%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
MYOM2	9172	genome.wustl.edu	37	8	1998921	1998921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003970.2	+1	validated	p.R14M	0.231	112	0%	97	30.9%	0	-	possibly_damaging(0.509)	deleterious(0)	deleterious(0.615)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2020437	2020437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003970.2	+1	validated	p.S269L	0.000	82	0%	113	31.9%	0	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2072077	2072077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003970.2	+1	validated	p.M1227I	1.000	288	0%	514	33.1%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_SSF48726
LOC100286951	100286951	genome.wustl.edu	37	8	2092872	2092872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342813.1	-1	model	p.M53I	0.781	37	0%	33	27.3%	2	0%	-	-	-	NULL
CSMD1	64478	genome.wustl.edu	37	8	2876021	2876021	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033225.5	-1	validated	p.S2670	0.991	58	0%	47	34%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3224608	3224608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033225.5	-1	validated	p.R1022W	0.998	109	0%	47	31.9%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MCPH1	79648	genome.wustl.edu	37	8	6302037	6302037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024596.3	+1	reviewed	p.S265Y	0.007	139	0%	92	33.7%	7	14.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ANGPT2	285	genome.wustl.edu	37	8	6377507	6377507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001147.2	-1	reviewed	p.D270N	0.048	295	0%	203	12.3%	1	0%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
DEFA4	1669	genome.wustl.edu	37	8	6793610	6793610	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001925.1	-1	reviewed	p.E76*	0.001	80	0%	63	20.6%	0	-	-	-	-	HMMSmart_SM00048,HMMPfam_Defensin_1,PatternScan_DEFENSIN
PRSS55	203074	genome.wustl.edu	37	8	10396121	10396121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198464.2	+1	validated	p.L293I	0.000	111	0%	129	31%	0	-	benign(0.138)	tolerated(0.19)	neutral(0.061)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RP1L1	94137	genome.wustl.edu	37	8	10467620	10467620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178857.5	-1	validated	p.G1330W	0.000	819	0%	1256	13.3%	1	0%	unknown(0)	deleterious(0)	-	NULL
XKR6	286046	genome.wustl.edu	37	8	10755465	10755465	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000382461	-1	known	p.S418Y	1.000	70	0%	46	32.6%	0	-	-	-	-	NULL
SLC35G5	83650	genome.wustl.edu	37	8	11188774	11188774	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054028.1	+1	reviewed	p.F53	0.995	196	0%	295	12.2%	1	0%	-	-	-	HMMPfam_DUF6
SLC35G5	83650	genome.wustl.edu	37	8	11188883	11188883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054028.1	+1	reviewed	p.R90C	0.827	233	0%	381	28.9%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_DUF6,superfamily_SSF103481
SLC35G5	83650	genome.wustl.edu	37	8	11189124	11189124	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054028.1	+1	reviewed	p.I170S	0.837	116	0%	169	35.5%	0	-	possibly_damaging(0.736)	deleterious(0.04)	deleterious(0.618)	HMMPfam_DUF6,superfamily_SSF103481
BLK	640	genome.wustl.edu	37	8	11406553	11406553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001715.2	+1	validated	p.A97V	1.000	143	0%	152	42.1%	1	0%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ZNF705F	790969	genome.wustl.edu	37	8	12216340	12216340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000400078	+1	known	p.E113D	0.241	47	0%	62	27.4%	0	-	-	-	-	NULL
FAM86B2	653333	genome.wustl.edu	37	8	12286248	12286248	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137610.1	-1	predicted	p.I212	0.000	51	0%	64	45.3%	1	0%	-	-	-	HMMPfam_Methyltransf_16,superfamily_SSF53335
OR7E8P	346708	genome.wustl.edu	37	8	12542155	12542155	+	Missense_Mutation	SNP	G	G	T	rs186580004	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000317826	-1	known	p.L178M	0.000	191	0.5%	150	28%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR7E8P	346708	genome.wustl.edu	37	8	12542244	12542244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000317826	-1	known	p.F148S	0.977	94	0%	83	38.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
KIAA1456	57604	genome.wustl.edu	37	8	12878638	12878638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020844.2	+1	validated	p.H150Q	0.772	63	0%	58	37.9%	1	0%	benign(0.029)	tolerated(0.15)	neutral(0.242)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
DLC1	10395	genome.wustl.edu	37	8	13356569	13356569	+	Missense_Mutation	SNP	G	G	A	rs191904737	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182643.2	-1	reviewed	p.R338C	1.000	253	0%	149	34.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DLC1	10395	genome.wustl.edu	37	8	13357127	13357127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182643.2	-1	reviewed	p.P152S	0.350	136	0%	80	28.7%	0	-	benign(0.001)	tolerated(1)	-	NULL
MSR1	4481	genome.wustl.edu	37	8	16032797	16032797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138715.2	-1	reviewed	p.S39N	0.807	218	0%	110	20%	18	0%	benign(0.007)	deleterious(0.02)	neutral(0.383)	NULL
EFHA2	286097	genome.wustl.edu	37	8	16935352	16935352	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181723.2	+1	validated	p.R210*	1.000	110	0%	58	31%	0	-	-	-	-	NULL
ZDHHC2	51201	genome.wustl.edu	37	8	17063200	17063200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016353.4	+1	validated	p.F171L	1.000	474	0%	211	32.7%	23	56.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-DHHC
SLC7A2	6542	genome.wustl.edu	37	8	17400948	17400948	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003046.5	+1	validated	p.L74V	0.993	98	0%	41	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17402056	17402056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003046.5	+1	validated	p.Y198C	0.318	196	0%	103	39.8%	0	-	benign(0.394)	deleterious(0.02)	deleterious(0.510)	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17409284	17409284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003046.5	+1	validated	p.R322W	1.000	287	0%	152	36.8%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_AA_permease
SLC7A2	6542	genome.wustl.edu	37	8	17422554	17422554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003046.5	+1	validated	p.H665N	0.000	108	0%	84	28.6%	0	-	benign(0)	tolerated(1)	-	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17422652	17422652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003046.5	+1	validated	p.F697L	1.000	84	0%	65	30.8%	0	-	benign(0.016)	-	-	NULL
PCM1	5108	genome.wustl.edu	37	8	17814153	17814153	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006197.3	+1	validated	p.E505*	1.000	91	0%	61	26.2%	10	20%	-	-	-	NULL
ASAH1	427	genome.wustl.edu	37	8	17917101	17917101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004315.4	-1	reviewed	p.K315N	0.003	206	0%	127	35.4%	191	31.9%	benign(0.002)	tolerated(0.58)	neutral(0.005)	HMMPfam_CBAH
NAT1	9	genome.wustl.edu	37	8	18079582	18079582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000662.5	+1	reviewed	p.R9I	1.000	142	0%	49	20.4%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54001
INTS10	55174	genome.wustl.edu	37	8	19701727	19701727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018142.2	+1	validated	p.E620D	1.000	107	0%	53	30.2%	33	51.5%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	NULL
LPL	4023	genome.wustl.edu	37	8	19805713	19805713	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000311322	+1	known	p.I37	0.585	102	0%	81	37%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
GFRA2	2675	genome.wustl.edu	37	8	21560454	21560454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001495.4	-1	reviewed	p.V361M	1.000	52	0%	59	33.9%	1	0%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
FGF17	8822	genome.wustl.edu	37	8	21903675	21903675	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003867.2	+1	reviewed	p.G41	0.775	19	0%	52	30.8%	2	100%	-	-	-	superfamily_Cytokine
BMP1	649	genome.wustl.edu	37	8	22037220	22037220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006129.4	+1	reviewed	p.G280D	1.000	81	0%	160	31.2%	36	38.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	"HMMPfam_Astacin,superfamily_Metalloproteases (""zincins"") catalytic domain"
BMP1	649	genome.wustl.edu	37	8	22054871	22054871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006129.4	+1	reviewed	p.R682H	1.000	76	0%	124	34.7%	42	28.5%	possibly_damaging(0.496)	deleterious(0.02)	deleterious(0.548)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PIWIL2	55124	genome.wustl.edu	37	8	22140723	22140723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135721.1	+1	validated	p.P201H	0.002	72	0%	72	27.8%	1	0%	benign(0.053)	deleterious(0)	neutral(0.448)	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22167535	22167535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135721.1	+1	validated	p.S583Y	1.000	142	0.7%	95	36.8%	0	-	possibly_damaging(0.95)	tolerated(0.63)	neutral(0.397)	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22168767	22168767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135721.1	+1	validated	p.R648L	0.997	68	0%	29	41.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ribonuclease H-like
EGR3	1960	genome.wustl.edu	37	8	22548608	22548608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004430.2	-1	reviewed	p.P181L	0.994	85	0%	148	35.1%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
EGR3	1960	genome.wustl.edu	37	8	22548788	22548788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004430.2	-1	reviewed	p.S121N	1.000	19	0%	30	43.3%	1	0%	benign(0.429)	tolerated(0.14)	neutral(0.389)	NULL
TNFRSF10C	8794	genome.wustl.edu	37	8	22960685	22960685	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003841.2	+1	reviewed	p.V17	0.001	40	0%	47	29.8%	2	0%	-	-	-	NULL
TNFRSF10C	8794	genome.wustl.edu	37	8	22973035	22973035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003841.2	+1	reviewed	p.S99R	0.000	85	0%	80	32.5%	3	0%	probably_damaging(0.999)	-	-	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
TNFRSF10D	8793	genome.wustl.edu	37	8	23004497	23004497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003840.3	-1	reviewed	p.E153D	0.044	106	0%	97	21.6%	1	100%	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
TNFRSF10D	8793	genome.wustl.edu	37	8	23004583	23004583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003840.3	-1	reviewed	p.Q125K	0.000	106	0%	119	33.6%	0	-	benign(0.059)	tolerated(0.71)	neutral(0.005)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
TNFRSF10D	8793	genome.wustl.edu	37	8	23021355	23021355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003840.3	-1	reviewed	p.L32F	0.019	20	0%	44	47.7%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
LOXL2	4017	genome.wustl.edu	37	8	23217622	23217622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002318.2	-1	reviewed	p.S171L	0.914	46	0%	43	14%	22	18.1%	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
STC1	6781	genome.wustl.edu	37	8	23709775	23709775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003155.2	-1	reviewed	p.A81T	1.000	109	0%	144	17.4%	17	17.6%	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	HMMPfam_Stanniocalcin
ADAMDEC1	27299	genome.wustl.edu	37	8	24261565	24261565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014479.3	+1	validated	p.G457E	0.000	245	0%	104	24%	34	2.9%	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_Disintegrin,HMMSmart_DISIN
ADAM7	8756	genome.wustl.edu	37	8	24346804	24346804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000380789	+1	known	p.K408N	0.346	147	0%	49	30.6%	0	-	benign(0.033)	tolerated(0.37)	neutral(0.021)	NULL
ADAM7	8756	genome.wustl.edu	37	8	24365001	24365001	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000380789	+1	known	p.A761	0.493	102	0%	53	35.8%	0	-	-	-	-	NULL
NEFM	4741	genome.wustl.edu	37	8	24773231	24773231	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005382.2	+1	reviewed	p.I398	0.999	93	0%	163	36.2%	0	-	-	-	-	HMMPfam_Filament,PatternScan_IF
NEFL	4747	genome.wustl.edu	37	8	24811709	24811709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000221169	-1	known	p.E385D	1.000	342	0%	593	35.6%	1	0%	-	-	-	HMMPfam_Filament
DOCK5	80005	genome.wustl.edu	37	8	25258560	25258560	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024940.6	+1	validated	p.K1635M	1.000	93	0%	82	25.6%	8	75%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
KCTD9	54793	genome.wustl.edu	37	8	25292998	25292998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017634.2	-1	validated	p.R232C	1.000	130	0%	85	25.9%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pentapeptide
CDCA2	157313	genome.wustl.edu	37	8	25319576	25319576	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152562.2	+1	validated	p.S80*	0.942	163	0%	222	29.7%	6	33.3%	-	-	-	NULL
PNMA2	10687	genome.wustl.edu	37	8	26365743	26365743	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007257.5	-1	validated	p.E177*	0.952	56	0%	45	11.1%	0	-	-	-	-	NULL
TRIM35	23087	genome.wustl.edu	37	8	27146748	27146748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_171982.3	-1	validated	p.D279N	0.005	75	0%	115	22.6%	23	34.7%	probably_damaging(0.996)	tolerated(0.64)	neutral(0.465)	NULL
PTK2B	2185	genome.wustl.edu	37	8	27308338	27308338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004103.3	+1	reviewed	p.R805W	0.997	130	0%	109	27.5%	18	5.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C8orf80	389643	genome.wustl.edu	37	8	27891133	27891133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010906.1	-1	provisional	p.A565T	0.137	157	0%	98	32.7%	1	0%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
ELP3	55140	genome.wustl.edu	37	8	27970611	27970611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018091.5	+1	validated	p.E180*	1.000	253	0%	155	23.2%	50	8%	-	-	-	HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
ZNF395	55893	genome.wustl.edu	37	8	28209179	28209179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018660.2	-1	validated	p.T356A	0.000	48	0%	57	35.1%	46	54.3%	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
INTS9	55756	genome.wustl.edu	37	8	28638466	28638466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018250.3	-1	reviewed	p.D382Y	1.000	70	0%	62	33.9%	41	34.1%	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
DCTN6	10671	genome.wustl.edu	37	8	30034701	30034701	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006571.2	+1	reviewed	p.G85A	1.000	215	0%	139	33.1%	53	45.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Trimeric LpxA-like enzymes
UBXN8	7993	genome.wustl.edu	37	8	30623765	30623765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000265616	+1	known	p.R222K	0.153	91	0%	88	26.1%	23	47.8%	-	-	-	HMMPfam_UBX,superfamily_Ubiquitin-like
TEX15	56154	genome.wustl.edu	37	8	30701600	30701600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031271.3	-1	validated	p.P1645H	0.995	117	0%	40	27.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TEX15	56154	genome.wustl.edu	37	8	30701606	30701606	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031271.3	-1	validated	p.I1643S	0.998	112	0%	42	28.6%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TEX15	56154	genome.wustl.edu	37	8	30706104	30706104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031271.3	-1	validated	p.T144A	0.041	130	0%	69	15.9%	0	-	benign(0.014)	tolerated(0.99)	neutral(0.001)	NULL
ENSG00000229211	0	genome.wustl.edu	37	8	31078127	31078127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429479	-1	known	p.S119Y	1.000	93	0%	46	30.4%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain
ENSG00000229211	0	genome.wustl.edu	37	8	31078228	31078228	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429479	-1	known	p.L85	0.998	53	0%	30	20%	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
NRG1	3084	genome.wustl.edu	37	8	32505464	32505464	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013959.3	+1	reviewed	p.I76	1.000	105	0%	127	32.3%	0	-	-	-	-	NULL
NRG1	3084	genome.wustl.edu	37	8	32585512	32585512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013956.3	+1	reviewed	p.A183V	0.963	185	0%	94	35.1%	1	0%	benign(0.245)	tolerated(0.07)	neutral(0.344)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
NRG1	3084	genome.wustl.edu	37	8	32607089	32607089	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013956.3	+1	reviewed	p.G234	1.000	310	0%	347	37.8%	0	-	-	-	-	superfamily_SSF57196
NRG1	3084	genome.wustl.edu	37	8	32617884	32617884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013956.3	+1	reviewed	p.E415*	1.000	34	0%	30	30%	0	-	-	-	-	HMMPfam_Neuregulin
DUSP26	78986	genome.wustl.edu	37	8	33454896	33454896	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024025.1	-1	provisional	p.F46	0.637	57	0%	112	24.1%	0	-	-	-	-	NULL
UNC5D	137970	genome.wustl.edu	37	8	35588570	35588570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080872.2	+1	validated	p.E574D	1.000	162	0%	73	26%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_ZU5,HMMSmart_SM00218
UNC5D	137970	genome.wustl.edu	37	8	35606045	35606045	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080872.2	+1	validated	p.S589	1.000	90	0%	58	34.5%	0	-	-	-	-	HMMPfam_ZU5,HMMSmart_SM00218
ERLIN2	11160	genome.wustl.edu	37	8	37608000	37608000	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007175.6	+1	validated	p.L215	0.998	72	0%	72	22.2%	40	40%	-	-	-	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37729408	37729408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002814.2	-1	validated	p.R971I	0.912	85	0%	69	31.9%	4	75%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RAB11FIP1	80223	genome.wustl.edu	37	8	37729584	37729584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002814.2	-1	validated	p.R912S	0.000	61	0%	60	16.7%	3	0%	possibly_damaging(0.732)	deleterious(0)	deleterious(0.712)	NULL
GOT1L1	137362	genome.wustl.edu	37	8	37794264	37794264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152413.2	-1	validated	p.S246Y	0.996	95	0%	82	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ADRB3	155	genome.wustl.edu	37	8	37823788	37823788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000025.2	-1	reviewed	p.R67I	1.000	28	0%	44	22.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ASH2L	9070	genome.wustl.edu	37	8	37993231	37993231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004674.3	+1	validated	p.D556Y	1.000	110	0%	106	24.5%	19	42.1%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00449
LETM2	137994	genome.wustl.edu	37	8	38258371	38258371	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144652.1	+1	provisional	p.V167L	1.000	28	0%	42	40.5%	4	50%	possibly_damaging(0.842)	tolerated(0.05)	deleterious(0.667)	HMMPfam_LETM1
HTRA4	203100	genome.wustl.edu	37	8	38840024	38840024	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153692.3	+1	reviewed	p.A374	0.245	231	0%	289	29.4%	1	0%	-	-	-	NULL
HTRA4	203100	genome.wustl.edu	37	8	38845468	38845468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153692.3	+1	reviewed	p.D428N	1.000	115	0%	154	30.5%	1	0%	benign(0.038)	tolerated(0.19)	neutral(0.052)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
ADAM32	203102	genome.wustl.edu	37	8	39022331	39022331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145004.5	+1	validated	p.E215K	0.877	233	0%	123	17.9%	0	-	possibly_damaging(0.598)	tolerated(0.11)	deleterious(0.479)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM32	203102	genome.wustl.edu	37	8	39079160	39079160	+	Missense_Mutation	SNP	G	G	A	rs141457355	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145004.5	+1	validated	p.R422Q	0.000	306	0%	96	25%	0	-	benign(0.026)	tolerated(0.57)	neutral(0.007)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
ADAM18	8749	genome.wustl.edu	37	8	39534992	39534992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014237.1	+1	reviewed	p.S523Y	0.900	162	0.6%	68	27.9%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ZMAT4	79698	genome.wustl.edu	37	8	40554769	40554769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024645.2	-1	validated	p.T115I	1.000	181	0%	76	27.6%	0	-	possibly_damaging(0.471)	tolerated(0.17)	neutral(0.214)	NULL
ZMAT4	79698	genome.wustl.edu	37	8	40554819	40554819	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024645.2	-1	validated	p.I98	1.000	190	0%	71	32.4%	0	-	-	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ANK1	286	genome.wustl.edu	37	8	41547778	41547778	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142446.1	-1	reviewed	p.C1398	0.990	117	0%	150	28%	0	-	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41556984	41556984	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142446.1	-1	reviewed	p.P889	0.166	143	0%	240	33.3%	0	-	-	-	-	superfamily_ANK
IKBKB	3551	genome.wustl.edu	37	8	42179460	42179460	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001556.1	+1	validated	p.R579*	0.232	229	0%	279	33%	28	7.1%	-	-	-	NULL
SLC20A2	6575	genome.wustl.edu	37	8	42329698	42329698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006749.3	-1	provisional	p.R71C	1.000	72	0%	67	25.4%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHO4
CHRNB3	1142	genome.wustl.edu	37	8	42586896	42586896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000749.3	+1	validated	p.Y149C	1.000	44	0%	47	27.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CHRNA6	8973	genome.wustl.edu	37	8	42612119	42612119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004198.2	-1	provisional	p.R109H	0.988	166	0%	155	38.7%	0	-	possibly_damaging(0.847)	tolerated(0.34)	neutral(0.348)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
RNF170	81790	genome.wustl.edu	37	8	42711368	42711368	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030954.3	-1	validated	p.I237	1.000	96	0%	56	44.6%	4	25%	-	-	-	HMMPfam_DUF1232
RNF170	81790	genome.wustl.edu	37	8	42729097	42729097	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030954.3	-1	validated	p.R64*	1.000	294	0%	173	36.4%	7	14.2%	-	-	-	superfamily_RING/U-box
HOOK3	84376	genome.wustl.edu	37	8	42868513	42868513	+	Missense_Mutation	SNP	G	G	T	rs187317168	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032410.3	+1	validated	p.E662D	1.000	160	0%	156	32.1%	7	14.2%	possibly_damaging(0.942)	tolerated(0.08)	deleterious(0.687)	HMMPfam_HOOK
POTEA	340441	genome.wustl.edu	37	8	43197046	43197046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005365.2	+1	validated	p.K404N	0.051	73	0%	35	31.4%	0	-	-	-	-	NULL
ENSG00000215179	0	genome.wustl.edu	37	8	47885212	47885212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000399732	-1	known	p.S340N	1.000	133	0%	103	30.1%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
KIAA0146	23514	genome.wustl.edu	37	8	48308981	48308981	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080394.1	+1	predicted	p.E191*	0.991	59	0%	33	24.2%	19	15.7%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48740782	48740782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000314191	-1	known	p.R2841S	0.000	210	0%	329	27.1%	38	36.8%	benign(0.001)	tolerated(1)	-	superfamily_ARM repeat
SNAI2	6591	genome.wustl.edu	37	8	49831491	49831491	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003068.3	-1	reviewed	p.L228	1.000	142	0%	221	36.2%	5	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SNTG1	54212	genome.wustl.edu	37	8	51363137	51363137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018967.2	+1	reviewed	p.F100C	1.000	422	0%	198	32.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SNTG1	54212	genome.wustl.edu	37	8	51664659	51664659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018967.2	+1	reviewed	p.Q461H	1.000	224	0%	84	27.4%	0	-	benign(0.029)	tolerated(0.2)	neutral(0.051)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52258467	52258467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144651.4	-1	validated	p.E1314D	0.000	205	0%	85	35.3%	0	-	benign(0.362)	tolerated(0.47)	neutral(0.126)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52258506	52258506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144651.4	-1	validated	p.D1301E	0.859	168	0%	79	36.7%	1	0%	benign(0.088)	tolerated(0.36)	neutral(0.026)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52287204	52287204	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144651.4	-1	validated	p.L1215	0.356	84	0%	131	36.6%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PXDNL	137902	genome.wustl.edu	37	8	52323841	52323841	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144651.4	-1	validated	p.K677	0.998	116	0%	188	32.4%	1	0%	-	-	-	NULL
PXDNL	137902	genome.wustl.edu	37	8	52370162	52370162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144651.4	-1	validated	p.R293Q	0.142	142	0%	98	12.2%	0	-	benign(0.058)	tolerated(1)	neutral(0.004)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PXDNL	137902	genome.wustl.edu	37	8	52412312	52412312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144651.4	-1	validated	p.Q133H	0.912	146	0%	76	26.3%	0	-	benign(0.007)	tolerated(0.06)	neutral(0.323)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PXDNL	137902	genome.wustl.edu	37	8	52567295	52567295	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144651.4	-1	validated	p.E64*	0.997	263	0%	142	24.6%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PCMTD1	115294	genome.wustl.edu	37	8	52744111	52744111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052937.2	-1	validated	p.R200Q	1.000	169	0%	74	24.3%	18	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53335
PCMTD1	115294	genome.wustl.edu	37	8	52746175	52746175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052937.2	-1	validated	p.R162Q	1.000	134	0.7%	69	40.6%	11	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53335
ST18	9705	genome.wustl.edu	37	8	53071634	53071634	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014682.2	-1	validated	p.R544*	1.000	173	0%	105	33.3%	0	-	-	-	-	HMMPfam_MYT1
ST18	9705	genome.wustl.edu	37	8	53084680	53084680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014682.2	-1	validated	p.E247D	0.998	143	0%	113	34.5%	0	-	benign(0.344)	deleterious(0.03)	deleterious(0.473)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53558288	53558288	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014781.4	-1	reviewed	p.R1321*	0.991	101	0%	47	34%	10	10%	-	-	-	NULL
ATP6V1H	51606	genome.wustl.edu	37	8	54745637	54745637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015941.2	-1	reviewed	p.M41I	1.000	220	0%	121	28.1%	29	44.8%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_V-ATPase_H,superfamily_ARM repeat
RP1	6101	genome.wustl.edu	37	8	55538458	55538458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006269.1	+1	reviewed	p.K672N	0.981	36	0%	50	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RP1	6101	genome.wustl.edu	37	8	55541767	55541767	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006269.1	+1	reviewed	p.L1775	0.001	121	0%	129	25.6%	0	-	-	-	-	NULL
RP1	6101	genome.wustl.edu	37	8	55542468	55542468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006269.1	+1	reviewed	p.R2009I	0.001	85	0%	80	40%	0	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	NULL
RP1	6101	genome.wustl.edu	37	8	55542599	55542599	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006269.1	+1	reviewed	p.D2053Y	0.000	67	0%	52	26.9%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
MOS	4342	genome.wustl.edu	37	8	57025882	57025882	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005372.1	-1	validated	p.F220	0.236	55	0%	131	33.6%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
MOS	4342	genome.wustl.edu	37	8	57026303	57026303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005372.1	-1	validated	p.R80H	0.026	35	0%	99	33.3%	0	-	benign(0)	tolerated(1)	-	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
SDR16C5	195814	genome.wustl.edu	37	8	57221583	57221583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138969.2	-1	validated	p.Y157H	1.000	201	0%	149	26.2%	0	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
CYP7A1	1581	genome.wustl.edu	37	8	59409214	59409214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000780.3	-1	reviewed	p.S286L	0.951	90	0%	74	23%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP7A1	1581	genome.wustl.edu	37	8	59409434	59409434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000780.3	-1	reviewed	p.D213N	1.000	163	0%	130	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP7A1	1581	genome.wustl.edu	37	8	59409607	59409607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000780.3	-1	reviewed	p.P155L	0.115	135	0%	143	30.8%	0	-	benign(0.004)	tolerated(0.67)	neutral(0.003)	HMMPfam_p450,superfamily_Cytochrome_P450
NSMAF	8439	genome.wustl.edu	37	8	59522249	59522249	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144772.1	-1	reviewed	p.E232*	1.000	148	0%	54	37%	15	6.6%	-	-	-	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like
TOX	9760	genome.wustl.edu	37	8	60031534	60031534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014729.2	-1	reviewed	p.F5L	1.000	23	0%	73	28.8%	11	54.5%	possibly_damaging(0.946)	tolerated(0.09)	deleterious(0.686)	NULL
CHD7	55636	genome.wustl.edu	37	8	61654067	61654067	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017780.2	+1	reviewed	p.E26*	1.000	169	0%	243	28.8%	1	0%	-	-	-	NULL
CHD7	55636	genome.wustl.edu	37	8	61742946	61742946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017780.2	+1	reviewed	p.K1196N	1.000	49	0%	33	24.2%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF2_N
CHD7	55636	genome.wustl.edu	37	8	61765200	61765200	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017780.2	+1	reviewed	p.K2013T	1.000	109	0%	50	28%	5	20%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
CHD7	55636	genome.wustl.edu	37	8	61777673	61777673	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017780.2	+1	reviewed	p.I2725	0.991	26	0%	40	27.5%	11	45.4%	-	-	-	NULL
CLVS1	157807	genome.wustl.edu	37	8	62371004	62371004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173519.2	+1	validated	p.D294N	1.000	100	0%	59	44.1%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_CRAL/TRIO domain
ASPH	444	genome.wustl.edu	37	8	62556553	62556553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004318.3	-1	reviewed	p.Q220H	0.332	143	0%	69	40.6%	61	60.6%	possibly_damaging(0.467)	tolerated(0.1)	neutral(0.440)	HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452
NKAIN3	286183	genome.wustl.edu	37	8	63492179	63492179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173688.2	+1	provisional	p.V46I	1.000	357	0%	151	24.5%	0	-	possibly_damaging(0.882)	tolerated(0.51)	neutral(0.353)	HMMPfam_NKAIN
MTFR1	9650	genome.wustl.edu	37	8	66594616	66594616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014637.3	+1	reviewed	p.S32L	1.000	160	0%	161	24.8%	19	15.7%	possibly_damaging(0.718)	deleterious(0)	deleterious(0.705)	HMMPfam_DUF729
MTFR1	9650	genome.wustl.edu	37	8	66620173	66620173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014637.3	+1	reviewed	p.R287Q	0.984	85	0%	58	20.7%	27	40.7%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
DNAJC5B	85479	genome.wustl.edu	37	8	66988894	66988894	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033105.4	+1	validated	e2-1	1.000	64	0%	22	18.2%	0	-	-	-	-	-
TRIM55	84675	genome.wustl.edu	37	8	67066432	67066432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_184085.1	+1	reviewed	p.S463G	1.000	98	0%	38	10.5%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
VCPIP1	80124	genome.wustl.edu	37	8	67577963	67577963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025054.4	-1	validated	p.L411I	1.000	88	0%	122	27%	3	0%	possibly_damaging(0.888)	tolerated(0.09)	deleterious(0.644)	NULL
SGK3	23678	genome.wustl.edu	37	8	67753270	67753270	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033578.1	+1	reviewed	p.V301	0.970	312	0%	153	37.9%	8	62.5%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PPP1R42	286187	genome.wustl.edu	37	8	67926703	67926703	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013626.2	-1	provisional	p.S85*	1.000	181	0%	116	26.7%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
CSPP1	79848	genome.wustl.edu	37	8	67998307	67998307	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077204.1	+1	validated	p.E125*	1.000	195	0%	151	28.5%	2	0%	-	-	-	NULL
CSPP1	79848	genome.wustl.edu	37	8	68049689	68049689	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077204.1	+1	validated	e17-2	1.000	131	0%	60	15%	0	-	-	-	-	-
CSPP1	79848	genome.wustl.edu	37	8	68066360	68066360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077204.1	+1	validated	p.L774I	1.000	144	0%	87	24.1%	4	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CSPP1	79848	genome.wustl.edu	37	8	68070810	68070810	+	Missense_Mutation	SNP	G	G	T	rs190028385	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077204.1	+1	validated	p.K820N	1.000	76	0%	96	35.4%	7	71.4%	possibly_damaging(0.566)	tolerated(0.17)	neutral(0.253)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68150691	68150691	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006421.3	-1	reviewed	p.L1059R	1.000	84	0%	69	33.3%	18	38.8%	possibly_damaging(0.919)	deleterious(0.02)	deleterious(0.752)	superfamily_ARM-type_fold
PREX2	80243	genome.wustl.edu	37	8	68939530	68939530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024870.2	+1	validated	p.R172I	1.000	154	0%	56	30.4%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),PatternScan_DH_1
PREX2	80243	genome.wustl.edu	37	8	68950493	68950493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024870.2	+1	validated	p.D269N	1.000	161	0%	58	31%	7	28.5%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SLCO5A1	81796	genome.wustl.edu	37	8	70667685	70667685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030958.2	-1	reviewed	p.S411L	1.000	203	0%	116	26.7%	1	0%	possibly_damaging(0.84)	tolerated(0.23)	neutral(0.363)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO5A1	81796	genome.wustl.edu	37	8	70667767	70667767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030958.2	-1	reviewed	p.F384V	0.980	152	0%	89	27%	1	0%	benign(0.085)	tolerated(0.51)	neutral(0.015)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
PRDM14	63978	genome.wustl.edu	37	8	70978534	70978534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024504.2	-1	validated	p.F373L	0.979	125	0%	151	41.1%	0	-	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	HMMSmart_SET
EYA1	2138	genome.wustl.edu	37	8	72181992	72181992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000503.4	-1	reviewed	p.A345T	1.000	149	0%	81	32.1%	9	33.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Hydrolase
TRPA1	8989	genome.wustl.edu	37	8	72936138	72936138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007332.2	-1	reviewed	p.F1020L	0.036	97	0%	53	20.8%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72945968	72945968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007332.2	-1	reviewed	p.L927M	0.001	132	0%	87	29.9%	0	-	possibly_damaging(0.901)	tolerated(0.19)	neutral(0.406)	HMMPfam_Ion_trans
TRPA1	8989	genome.wustl.edu	37	8	72951200	72951200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007332.2	-1	reviewed	p.P732H	0.997	117	0%	71	35.2%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
TRPA1	8989	genome.wustl.edu	37	8	72975056	72975056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007332.2	-1	reviewed	p.G262D	1.000	238	0%	128	33.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LOC392232	392232	genome.wustl.edu	37	8	73121310	73121310	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_037363.2	-1	model	NULL	0.593	48	0%	22	31.8%	0	-	-	-	-	-
LOC392232	392232	genome.wustl.edu	37	8	73122089	73122089	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_037363.2	-1	model	NULL	0.997	45	0%	18	27.8%	0	-	-	-	-	-
KCNB2	9312	genome.wustl.edu	37	8	73848394	73848394	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004770.2	+1	reviewed	p.V268	1.000	141	0%	72	33.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
RDH10	157506	genome.wustl.edu	37	8	74209448	74209448	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172037.3	+1	validated	p.E103D	1.000	106	0%	200	30.5%	21	42.8%	benign(0.232)	tolerated(0.14)	neutral(0.273)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
LY96	23643	genome.wustl.edu	37	8	74922307	74922307	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015364.3	+1	validated	p.E92*	0.972	197	0%	79	29.1%	14	0%	-	-	-	HMMPfam_E1_DerP2_DerF2,HMMSmart_SM00737
ZFHX4	79776	genome.wustl.edu	37	8	77690553	77690553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.S1042L	0.999	65	0%	36	30.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_SM00451,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77763270	77763270	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.P1326	0.000	95	0%	69	36.2%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77763816	77763816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.K1508N	1.000	41	0%	24	37.5%	0	-	benign(0.189)	-	-	HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77764911	77764911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.F1873L	1.000	36	0%	17	47.1%	0	-	benign(0.016)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77765372	77765372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.S2027Y	0.998	36	0%	27	22.2%	0	-	probably_damaging(0.959)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77766074	77766074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.R2261Q	0.993	93	0%	72	36.1%	0	-	probably_damaging(0.968)	-	-	superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77767449	77767449	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.P2719	0.051	70	0%	43	32.6%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77768158	77768158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.G2956R	0.992	67	0%	52	11.5%	0	-	possibly_damaging(0.948)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77775556	77775556	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024721.4	+1	validated	p.I3157	1.000	209	0%	110	21.8%	0	-	-	-	-	NULL
PKIA	5569	genome.wustl.edu	37	8	79510760	79510760	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006823.2	+1	reviewed	p.I47	1.000	83	0%	35	20%	2	0%	-	-	-	HMMPfam_PKI
PAG1	55824	genome.wustl.edu	37	8	81889139	81889139	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018440.3	-1	reviewed	p.I313	1.000	63	0%	26	34.6%	1	0%	-	-	-	NULL
PAG1	55824	genome.wustl.edu	37	8	81897467	81897467	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018440.3	-1	reviewed	p.S140	0.000	85	0%	37	43.2%	6	0%	-	-	-	NULL
PMP2	5375	genome.wustl.edu	37	8	82357192	82357192	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002677.3	-1	validated	p.L36V	0.994	266	0%	113	30.1%	0	-	possibly_damaging(0.775)	tolerated(1)	neutral(0.288)	HMMPfam_Lipocalin,superfamily_Lipocalins
ZFAND1	79752	genome.wustl.edu	37	8	82630419	82630419	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024699.2	-1	validated	p.F32L	1.000	187	0%	376	29.8%	27	40.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-AN1,HMMSmart_SM00154
CA3	761	genome.wustl.edu	37	8	86360301	86360301	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005181.3	+1	reviewed	p.N234	0.665	46	0%	41	36.6%	1	0%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
ATP6V0D2	245972	genome.wustl.edu	37	8	87151759	87151759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152565.1	+1	validated	p.L126M	1.000	90	0%	53	24.5%	0	-	benign(0.012)	tolerated(0.07)	neutral(0.320)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
WWP1	11059	genome.wustl.edu	37	8	87473462	87473462	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007013.3	+1	validated	p.E837*	1.000	149	0%	79	25.3%	20	25%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
CPNE3	8895	genome.wustl.edu	37	8	87541180	87541180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003909.3	+1	reviewed	p.R47H	1.000	191	0%	104	30.8%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CPNE3	8895	genome.wustl.edu	37	8	87544736	87544736	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003909.3	+1	reviewed	e4-1	1.000	61	0%	52	36.5%	0	-	-	-	-	-
CPNE3	8895	genome.wustl.edu	37	8	87563431	87563431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003909.3	+1	reviewed	p.M363I	0.907	212	0%	174	30.5%	14	21.4%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
CNGB3	54714	genome.wustl.edu	37	8	87644998	87644998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019098.4	-1	reviewed	p.F434L	1.000	99	0%	31	22.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CNGB3	54714	genome.wustl.edu	37	8	87679354	87679354	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019098.4	-1	reviewed	p.L217	0.485	111	0%	120	37.5%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
CNGB3	54714	genome.wustl.edu	37	8	87751919	87751919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019098.4	-1	reviewed	p.P59S	0.035	276	0%	248	30.2%	0	-	benign(0.082)	deleterious(0.01)	neutral(0.412)	NULL
CNBD1	168975	genome.wustl.edu	37	8	88365876	88365876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173538.2	+1	provisional	p.K389Q	0.043	98	0%	26	26.9%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_cNMP_binding,superfamily_cNMP_binding
MMP16	4325	genome.wustl.edu	37	8	89198769	89198769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005941.4	-1	reviewed	p.H114N	1.000	129	0%	147	13.6%	0	-	benign(0)	tolerated(1)	-	NULL
NBN	4683	genome.wustl.edu	37	8	90983450	90983450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002485.4	-1	reviewed	p.R218I	1.000	239	0%	127	25.2%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DECR1	1666	genome.wustl.edu	37	8	91063912	91063912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001359.1	+1	reviewed	p.K298T	1.000	97	0%	56	41.1%	151	50.9%	-	-	-	superfamily_NAD(P)-bd
LRRC69	100130742	genome.wustl.edu	37	8	92231139	92231139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129890.1	+1	provisional	p.L319M	0.585	201	0%	87	26.4%	0	-	possibly_damaging(0.765)	tolerated(0.13)	deleterious(0.536)	NULL
RUNX1T1	862	genome.wustl.edu	37	8	93017381	93017381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175634.1	-1	reviewed	p.D235N	1.000	166	0%	63	27%	0	-	possibly_damaging(0.484)	deleterious(0.02)	deleterious(0.543)	NULL
RBM12B	389677	genome.wustl.edu	37	8	94747132	94747132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203390.2	-1	validated	p.E503K	0.092	103	0%	132	27.3%	13	69.2%	benign(0.055)	tolerated(0.05)	neutral(0.349)	NULL
TMEM67	91147	genome.wustl.edu	37	8	94776139	94776139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153704.5	+1	reviewed	p.S159Y	0.602	214	0%	176	27.3%	6	33.3%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_Growth factor receptor domain
TMEM67	91147	genome.wustl.edu	37	8	94797485	94797485	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153704.5	+1	reviewed	p.F389	0.488	175	0%	154	24.7%	4	75%	-	-	-	HMMPfam_Meckelin
TMEM67	91147	genome.wustl.edu	37	8	94803495	94803495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153704.5	+1	reviewed	p.S508Y	1.000	83	1.2%	44	31.8%	8	37.5%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_Meckelin
TMEM67	91147	genome.wustl.edu	37	8	94822105	94822105	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153704.5	+1	reviewed	p.I918	1.000	66	0%	65	26.2%	5	60%	-	-	-	HMMPfam_Meckelin
CDH17	1015	genome.wustl.edu	37	8	95188800	95188800	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144663.1	-1	reviewed	p.Y131	0.890	235	0%	151	29.8%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
RAD54B	25788	genome.wustl.edu	37	8	95390494	95390494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012415.2	-1	reviewed	p.K810T	1.000	82	0%	108	38.9%	3	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
RAD54B	25788	genome.wustl.edu	37	8	95479709	95479709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012415.2	-1	reviewed	p.F20C	1.000	267	0%	211	24.2%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95511732	95511732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015496.3	-1	validated	p.S1367Y	1.000	106	0%	98	26.5%	4	0%	probably_damaging(0.982)	tolerated(0.06)	deleterious(0.749)	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95522758	95522758	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015496.3	-1	validated	p.Q1171	1.000	139	0%	53	43.4%	26	53.8%	-	-	-	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95523514	95523514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015496.3	-1	validated	p.E1097*	1.000	58	0%	35	37.1%	11	9%	-	-	-	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95539136	95539136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015496.3	-1	validated	p.R446C	1.000	98	0%	57	19.3%	10	40%	possibly_damaging(0.772)	deleterious(0.05)	deleterious(0.632)	NULL
ESRP1	54845	genome.wustl.edu	37	8	95653675	95653675	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017697.3	+1	validated	p.K43	1.000	86	0%	156	32.7%	49	59.1%	-	-	-	NULL
UQCRB	7381	genome.wustl.edu	37	8	97243309	97243309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006294.3	-1	reviewed	p.E104K	1.000	110	0%	81	35.8%	546	37.3%	unknown(0)	deleterious(0.01)	-	HMMPfam_UCR_14kD,superfamily_14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
MTERFD1	51001	genome.wustl.edu	37	8	97263222	97263222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015942.3	-1	provisional	p.D197Y	1.000	204	0%	159	28.9%	22	27.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_mTERF,HMMSmart_SM00733
CPQ	10404	genome.wustl.edu	37	8	97797477	97797477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016134.2	+1	provisional	p.E118*	1.000	109	0%	46	30.4%	15	0%	-	-	-	NULL
CPQ	10404	genome.wustl.edu	37	8	98155368	98155368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016134.2	+1	provisional	p.S459Y	0.997	248	0.4%	116	30.2%	30	3.3%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	superfamily_SSF53187
TSPYL5	85453	genome.wustl.edu	37	8	98289179	98289179	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033512.2	-1	validated	p.F298	0.059	86	0%	148	27.7%	1	0%	-	-	-	HMMPfam_NAP
MATN2	4147	genome.wustl.edu	37	8	99045299	99045299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002380.3	+1	reviewed	p.D871Y	1.000	225	0%	104	27.9%	36	2.7%	probably_damaging(0.996)	tolerated(0.51)	deleterious(0.471)	NULL
KCNS2	3788	genome.wustl.edu	37	8	99440341	99440341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020697.2	+1	provisional	p.R45H	1.000	20	0%	40	27.5%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
VPS13B	157680	genome.wustl.edu	37	8	100115340	100115340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017890.3	+1	reviewed	p.D191G	1.000	173	0%	85	21.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100128048	100128048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017890.3	+1	reviewed	p.G295S	1.000	117	0%	43	32.6%	1	0%	benign(0.29)	tolerated(0.5)	neutral(0.099)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100182285	100182285	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017890.3	+1	reviewed	p.G743*	1.000	215	0%	217	27.6%	2	50%	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100205264	100205264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017890.3	+1	reviewed	p.N832H	1.000	119	0%	90	28.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100789005	100789005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017890.3	+1	reviewed	p.S2442Y	1.000	151	0%	86	25.6%	1	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100883724	100883724	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017890.3	+1	reviewed	p.D3873	0.852	47	0%	50	38%	15	46.6%	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100883847	100883847	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017890.3	+1	reviewed	p.I3914	0.752	73	0%	48	25%	30	30%	-	-	-	NULL
RGS22	26166	genome.wustl.edu	37	8	100994253	100994253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015668.3	-1	validated	p.A1091G	1.000	138	0%	102	33.3%	0	-	probably_damaging(0.971)	tolerated(0.33)	neutral(0.437)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS22	26166	genome.wustl.edu	37	8	101092434	101092434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015668.3	-1	validated	p.K89N	0.430	261	0%	142	26.8%	0	-	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	NULL
SPAG1	6674	genome.wustl.edu	37	8	101196879	101196879	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003114.3	+1	reviewed	p.F207V	0.223	115	0%	64	26.6%	2	50%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
RNF19A	25897	genome.wustl.edu	37	8	101271291	101271291	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015435.3	-1	reviewed	p.G670	0.518	240	0%	114	30.7%	17	35.2%	-	-	-	NULL
SNX31	169166	genome.wustl.edu	37	8	101625286	101625286	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152628.3	-1	validated	p.R154	0.298	136	0%	99	33.3%	1	0%	-	-	-	NULL
UBR5	51366	genome.wustl.edu	37	8	103323690	103323690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015902.4	-1	reviewed	p.T818N	1.000	85	0%	69	34.8%	5	20%	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	NULL
AZIN1	51582	genome.wustl.edu	37	8	103851010	103851010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015878.4	-1	reviewed	p.I137M	0.363	347	0%	261	32.2%	69	44.9%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Orn_Arg_deC_N,superfamily_SSF51419
FZD6	8323	genome.wustl.edu	37	8	104337001	104337001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003506.3	+1	reviewed	p.D223Y	1.000	95	0%	52	19.2%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Frizzled
DCAF13	25879	genome.wustl.edu	37	8	104439410	104439410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015420.6	+1	validated	p.R337I	1.000	133	0%	105	31.4%	37	37.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_WD40,superfamily_WD40_like
DCAF13	25879	genome.wustl.edu	37	8	104452432	104452432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015420.6	+1	validated	p.I492T	0.996	302	0%	151	29.1%	92	50%	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
RIMS2	9699	genome.wustl.edu	37	8	104948787	104948787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100117.1	+1	validated	p.N795S	1.000	75	0%	53	43.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
DPYS	1807	genome.wustl.edu	37	8	105405062	105405062	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001385.2	-1	reviewed	p.R465*	0.996	91	0%	51	27.5%	0	-	-	-	-	superfamily_Metalo_hydrolase
ZFPM2	23414	genome.wustl.edu	37	8	106573705	106573705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012082.3	+1	reviewed	p.S139Y	1.000	82	0%	44	27.3%	0	-	benign(0.057)	deleterious(0.02)	neutral(0.387)	NULL
ZFPM2	23414	genome.wustl.edu	37	8	106801039	106801039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012082.3	+1	reviewed	p.A209V	1.000	128	0%	82	34.1%	0	-	benign(0.003)	tolerated(0.22)	neutral(0.042)	NULL
ZFPM2	23414	genome.wustl.edu	37	8	106814623	106814623	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012082.3	+1	reviewed	p.T771	0.996	64	0%	39	30.8%	0	-	-	-	-	NULL
ABRA	137735	genome.wustl.edu	37	8	107773353	107773353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139166.4	-1	validated	p.R353H	1.000	136	0%	122	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANGPT1	284	genome.wustl.edu	37	8	108359294	108359294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001146.3	-1	reviewed	p.S110L	1.000	172	0%	64	35.9%	0	-	benign(0.005)	-	-	NULL
RSPO2	340419	genome.wustl.edu	37	8	109094857	109094857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178565.4	-1	validated	p.R4C	1.000	63	0%	125	38.4%	0	-	unknown(0)	deleterious(0)	-	NULL
EIF3E	3646	genome.wustl.edu	37	8	109215330	109215330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001568.2	-1	validated	p.G394D	1.000	195	0%	99	28.3%	455	45%	unknown(0)	tolerated(0.27)	-	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
EIF3E	3646	genome.wustl.edu	37	8	109226942	109226942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001568.2	-1	validated	p.L319I	1.000	94	0%	54	25.9%	369	9.7%	benign(0.054)	tolerated(0.56)	neutral(0.010)	HMMPfam_PCI
EIF3E	3646	genome.wustl.edu	37	8	109254056	109254056	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001568.2	-1	validated	p.K59N	1.000	137	0%	92	40.2%	260	52.6%	possibly_damaging(0.508)	deleterious(0)	deleterious(0.615)	HMMPfam_eIF3_N
TMEM74	157753	genome.wustl.edu	37	8	109796916	109796916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153015.1	-1	provisional	p.E138K	0.061	95	0%	153	30.7%	0	-	benign(0.007)	tolerated(0.73)	neutral(0.002)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110424623	110424623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177531.4	+1	validated	p.L739V	1.000	114	0%	66	28.8%	20	65%	benign(0.123)	tolerated(0.23)	neutral(0.052)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110456078	110456078	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177531.4	+1	validated	p.E1580*	1.000	134	0%	59	22%	9	33.3%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
PKHD1L1	93035	genome.wustl.edu	37	8	110520054	110520054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177531.4	+1	validated	p.R3719S	1.000	99	0%	62	30.6%	85	47%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110527510	110527510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177531.4	+1	validated	p.E3889*	0.643	200	0%	61	29.5%	81	41.9%	-	-	-	NULL
SYBU	55638	genome.wustl.edu	37	8	110587401	110587401	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099744.1	-1	validated	p.E576*	1.000	74	0%	39	35.9%	54	50%	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113267612	113267612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.E3303*	1.000	183	0%	79	31.6%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113318320	113318320	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.R2663*	0.999	145	0%	80	28.7%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113323349	113323349	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.I2581	1.000	67	0%	26	19.2%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113323394	113323396	+	Frame_Shift_Del	DEL	AGC	AGC	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.A2566fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113331157	113331157	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.C2423	1.000	113	0%	46	30.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113347619	113347619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.Q2368H	1.000	145	0.7%	61	24.6%	0	-	benign(0.123)	tolerated(0.13)	neutral(0.263)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113657379	113657379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.S1090Y	1.000	140	0%	121	36.4%	0	-	possibly_damaging(0.928)	tolerated(0.42)	neutral(0.390)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	114111073	114111073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198123.1	-1	validated	p.D277Y	1.000	169	0%	62	30.6%	0	-	unknown(0)	tolerated(0.68)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TRPS1	7227	genome.wustl.edu	37	8	116616971	116616971	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014112.2	-1	reviewed	p.K409Q	0.997	218	0%	123	30.9%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC30A8	169026	genome.wustl.edu	37	8	118165286	118165286	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173851.2	+1	reviewed	p.S125	0.213	107	0%	80	30%	0	-	-	-	-	HMMPfam_Cation_efflux
TNFRSF11B	4982	genome.wustl.edu	37	8	119936888	119936888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002546.3	-1	reviewed	p.D311Y	1.000	211	0%	135	12.6%	0	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
ENPP2	5168	genome.wustl.edu	37	8	120594793	120594793	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006209.3	-1	reviewed	p.L583	0.996	126	0%	77	32.5%	17	0%	-	-	-	NULL
ENPP2	5168	genome.wustl.edu	37	8	120596268	120596268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006209.3	-1	reviewed	p.K515N	1.000	188	0%	155	32.3%	21	14.2%	benign(0.247)	tolerated(0.11)	neutral(0.297)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
COL14A1	7373	genome.wustl.edu	37	8	121279137	121279137	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000434620	+1	known	p.E843*	0.000	246	0%	124	30.6%	0	-	-	-	-	NULL
HAS2	3037	genome.wustl.edu	37	8	122626715	122626715	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005328.2	-1	reviewed	p.I431	0.843	62	0%	42	33.3%	11	54.5%	-	-	-	NULL
C8orf76	84933	genome.wustl.edu	37	8	124251331	124251331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032847.1	-1	predicted	p.K57N	0.889	233	0%	492	33.7%	22	54.5%	benign(0.101)	tolerated(0.17)	neutral(0.067)	superfamily_SSF48452
ZHX1	11244	genome.wustl.edu	37	8	124265801	124265801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017926.1	-1	reviewed	p.N796D	1.000	172	0%	183	34.4%	16	43.7%	probably_damaging(0.991)	tolerated(0.74)	neutral(0.446)	HMMSmart_HOX,superfamily_Homeodomain_like
ZHX1	11244	genome.wustl.edu	37	8	124267289	124267289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017926.1	-1	reviewed	p.L300I	1.000	136	0%	96	28.1%	18	50%	benign(0.139)	tolerated(1)	neutral(0.012)	HMMSmart_HOX,superfamily_Homeodomain_like
ZHX1	11244	genome.wustl.edu	37	8	124267333	124267333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017926.1	-1	reviewed	p.S285N	1.000	93	0%	84	31%	14	35.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_HOX,superfamily_Homeodomain_like
ATAD2	29028	genome.wustl.edu	37	8	124335210	124335210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014109.3	-1	reviewed	p.R1367C	1.000	210	0%	264	33.7%	47	51%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FER1L6	654463	genome.wustl.edu	37	8	125022855	125022855	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039112.2	+1	validated	p.F574	0.982	129	0%	77	32.5%	0	-	-	-	-	NULL
FER1L6	654463	genome.wustl.edu	37	8	125058068	125058068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039112.2	+1	validated	p.L884M	0.719	131	0%	70	32.9%	0	-	possibly_damaging(0.922)	tolerated(0.05)	deleterious(0.717)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L6	654463	genome.wustl.edu	37	8	125081650	125081650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039112.2	+1	validated	p.K1256N	1.000	160	0%	84	27.4%	0	-	benign(0.186)	tolerated(0.36)	neutral(0.038)	NULL
FER1L6	654463	genome.wustl.edu	37	8	125083797	125083797	+	Silent	SNP	C	C	T	rs142783331	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039112.2	+1	validated	p.S1339	0.171	132	0%	48	37.5%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FER1L6	654463	genome.wustl.edu	37	8	125110086	125110086	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039112.2	+1	validated	p.I1615	1.000	102	0%	67	31.3%	0	-	-	-	-	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ENSG00000200304	0	genome.wustl.edu	37	8	131081833	131081833	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000363434	-1	novel	NULL	0.061	7	0.000	30	0.267	0	-	-	-	-	-
ASAP1	50807	genome.wustl.edu	37	8	131191540	131191540	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018482.2	-1	validated	p.N239T	1.000	291	0%	129	27.1%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EFR3A	23167	genome.wustl.edu	37	8	132957062	132957062	+	Missense_Mutation	SNP	G	G	A	rs143933422	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015137.3	+1	validated	p.R53Q	1.000	162	0%	49	32.7%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
EFR3A	23167	genome.wustl.edu	37	8	132968094	132968094	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015137.3	+1	validated	p.E240*	1.000	291	0%	162	29.6%	8	0%	-	-	-	superfamily_ARM repeat
OC90	729330	genome.wustl.edu	37	8	133053304	133053304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080399.2	-1	validated	p.K148N	0.019	114	0%	41	22%	0	-	probably_damaging(0.969)	tolerated(0.15)	deleterious(0.652)	HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2
HHLA1	10086	genome.wustl.edu	37	8	133090105	133090105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145095.1	-1	provisional	p.L347I	0.062	136	0%	50	28%	0	-	benign(0.202)	tolerated(0.39)	neutral(0.036)	NULL
HHLA1	10086	genome.wustl.edu	37	8	133107829	133107829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145095.1	-1	provisional	p.D129Y	0.999	154	0%	75	9.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133150166	133150166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004519.2	-1	reviewed	p.D556N	1.000	86	0%	63	31.7%	0	-	probably_damaging(0.979)	tolerated(0.21)	neutral(0.466)	HMMPfam_KCNQ_channel
LRRC6	23639	genome.wustl.edu	37	8	133673710	133673710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012472.3	-1	provisional	p.K58N	1.000	81	0%	45	31.1%	2	100%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1
PHF20L1	51105	genome.wustl.edu	37	8	133806667	133806667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016018.4	+1	validated	p.R32Q	1.000	131	0%	43	25.6%	20	0%	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	HMMSmart_SM00333,HMMSmart_SM00743,superfamily_Tudor/PWWP/MBT
PHF20L1	51105	genome.wustl.edu	37	8	133806824	133806824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016018.4	+1	validated	p.F84L	0.400	114	0%	59	44.1%	12	91.6%	benign(0.001)	tolerated(0.68)	neutral(0.002)	superfamily_Tudor/PWWP/MBT
PHF20L1	51105	genome.wustl.edu	37	8	133816967	133816967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016018.4	+1	validated	p.R277*	1.000	86	0%	30	30%	26	15.3%	-	-	-	NULL
TG	7038	genome.wustl.edu	37	8	133931666	133931666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003235.4	+1	reviewed	p.P1475H	0.998	86	0%	47	25.5%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_GCC2_GCC3,superfamily_TNF receptor-like
TG	7038	genome.wustl.edu	37	8	133978943	133978943	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003235.4	+1	reviewed	e30+1	1.000	88	0%	55	34.5%	0	-	-	-	-	-
TG	7038	genome.wustl.edu	37	8	134108577	134108577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003235.4	+1	reviewed	p.S2511Y	0.816	73	0%	54	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
ZFAT	57623	genome.wustl.edu	37	8	135490746	135490746	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020863.3	-1	reviewed	p.E1237	0.860	28	0%	20	20%	16	6.2%	-	-	-	NULL
ZFAT	57623	genome.wustl.edu	37	8	135600606	135600606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020863.3	-1	reviewed	p.G866R	1.000	85	0%	57	28.1%	4	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	PatternScan_SUGAR_TRANSPORT_1
KHDRBS3	10656	genome.wustl.edu	37	8	136533530	136533530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006558.1	+1	provisional	p.D47N	1.000	130	0%	79	22.8%	22	45.4%	possibly_damaging(0.933)	tolerated(0.09)	deleterious(0.675)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139160814	139160814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015912.3	-1	validated	p.E1133K	1.000	171	0%	85	30.6%	0	-	unknown(0)	-	-	superfamily_alpha/beta-Hydrolases
FAM135B	51059	genome.wustl.edu	37	8	139164616	139164616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015912.3	-1	validated	p.R701Q	0.863	65	0%	38	31.6%	1	100%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
PTK2	5747	genome.wustl.edu	37	8	141840605	141840605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005607.3	-1	reviewed	p.R227Q	1.000	72	0%	44	29.5%	8	50%	probably_damaging(0.979)	tolerated(0.35)	neutral(0.443)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
DENND3	22898	genome.wustl.edu	37	8	142185306	142185306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014957.2	+1	validated	p.E681D	1.000	67	0%	94	47.9%	3	0%	benign(0.129)	tolerated(0.49)	neutral(0.021)	NULL
LYNX1	66004	genome.wustl.edu	37	8	143857052	143857052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023946.2	-1	reviewed	p.R38H	1.000	77	0%	139	30.9%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UPAR_LY6,superfamily_Snake toxin-like
C8orf31	286122	genome.wustl.edu	37	8	144130655	144130655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173687.2	+1	predicted	p.L129I	0.007	208	0%	278	28.1%	7	85.7%	unknown(0)	-	-	NULL
LY6H	4062	genome.wustl.edu	37	8	144239858	144239858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130478.1	-1	validated	p.D99N	0.808	87	0%	149	33.6%	1	0%	possibly_damaging(0.86)	tolerated(0.21)	neutral(0.377)	HMMPfam_UPAR_LY6,HMMSmart_SM00134,superfamily_Snake toxin-like
TOP1MT	116447	genome.wustl.edu	37	8	144407665	144407665	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052963.1	-1	reviewed	p.F174	0.998	192	0%	366	27.6%	17	11.7%	-	-	-	HMMPfam_Topoisom_I_N,superfamily_TopoI_DNA_bd_euk
TSTA3	7264	genome.wustl.edu	37	8	144698298	144698298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003313.3	-1	reviewed	p.I80S	1.000	167	0%	257	23.7%	134	47%	benign(0.001)	tolerated(0.28)	neutral(0.032)	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
PUF60	22827	genome.wustl.edu	37	8	144898867	144898867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_078480.1	-1	reviewed	p.E501D	1.000	197	0%	368	27.7%	470	45.9%	possibly_damaging(0.445)	tolerated(0.28)	neutral(0.177)	HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
KIFC2	90990	genome.wustl.edu	37	8	145692647	145692647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145754.2	+1	provisional	p.L131R	0.818	39	0%	70	38.6%	3	0%	possibly_damaging(0.861)	deleterious(0.03)	deleterious(0.698)	NULL
ZNF252	286101	genome.wustl.edu	37	8	146202106	146202106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000355436	-1	known	p.R581I	0.317	61	0%	17	35.3%	15	46.6%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C9orf66	157983	genome.wustl.edu	37	9	214595	214595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152569.2	-1	validated	p.E268K	0.008	20	0%	39	28.2%	0	-	unknown(0)	-	-	NULL
DOCK8	81704	genome.wustl.edu	37	9	428426	428426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203447.3	+1	reviewed	p.S1400Y	1.000	148	0%	104	29.8%	11	0%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
DOCK8	81704	genome.wustl.edu	37	9	443456	443456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203447.3	+1	reviewed	p.E1772D	0.674	270	0%	229	18.8%	16	0%	benign(0.001)	tolerated(1)	-	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2029101	2029101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003070.3	+1	reviewed	p.L27I	1.000	21	0%	28	21.4%	16	56.2%	unknown(0)	tolerated(0.15)	-	NULL
SMARCA2	6595	genome.wustl.edu	37	9	2058346	2058346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003070.3	+1	reviewed	p.S468F	1.000	112	0%	72	29.2%	12	33.3%	possibly_damaging(0.449)	deleterious(0.01)	deleterious(0.552)	HMMPfam_HSA,HMMSmart_SM00573
SMARCA2	6595	genome.wustl.edu	37	9	2192726	2192726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003070.3	+1	reviewed	p.T1587M	1.000	184	0%	120	38.3%	131	38.1%	unknown(0)	deleterious(0.03)	-	NULL
RFX3	5991	genome.wustl.edu	37	9	3293110	3293110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_134428.1	-1	reviewed	p.F233C	1.000	137	0%	67	32.8%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"
GLIS3	169792	genome.wustl.edu	37	9	4117800	4117800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042413.1	-1	reviewed	p.V560F	1.000	170	0%	267	12%	13	23%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RCL1	10171	genome.wustl.edu	37	9	4834209	4834209	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005772.3	+1	validated	p.V176	0.407	109	0%	74	25.7%	22	27.2%	-	-	-	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B
JAK2	3717	genome.wustl.edu	37	9	5050746	5050746	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004972.3	+1	reviewed	p.E177*	1.000	276	0%	227	32.2%	5	20%	-	-	-	HMMSmart_B41
INSL6	11172	genome.wustl.edu	37	9	5185438	5185438	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007179.2	-1	reviewed	p.F55	0.000	50	0%	92	42.4%	0	-	-	-	-	HMMPfam_Insulin,HMMSmart_IlGF,superfamily_Insulin-like
KIAA1432	57589	genome.wustl.edu	37	9	5747338	5747338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020829.2	+1	validated	p.R350C	1.000	169	0%	95	26.3%	8	25%	possibly_damaging(0.44)	tolerated(0.1)	neutral(0.430)	superfamily_Amine_DH_B_like
KIAA1432	57589	genome.wustl.edu	37	9	5772625	5772625	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020829.2	+1	validated	p.G1147	0.247	113	0%	46	32.6%	22	31.8%	-	-	-	NULL
KIAA1432	57589	genome.wustl.edu	37	9	5772740	5772740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020829.2	+1	validated	p.R1186W	0.982	118	0%	48	37.5%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ERMP1	79956	genome.wustl.edu	37	9	5805644	5805644	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024896.2	-1	validated	p.K564Q	1.000	81	0%	78	19.2%	51	45%	benign(0.144)	tolerated(0.13)	neutral(0.265)	NULL
ERMP1	79956	genome.wustl.edu	37	9	5812195	5812195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024896.2	-1	validated	p.E348D	1.000	187	0%	189	28.6%	45	42.2%	benign(0.013)	tolerated(0.6)	neutral(0.005)	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
MLANA	2315	genome.wustl.edu	37	9	5897631	5897631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005511.1	+1	validated	p.R51Q	0.996	131	0%	57	26.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5922155	5922155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017969.2	-1	validated	p.L1281I	1.000	219	0%	107	29%	11	36.3%	probably_damaging(0.981)	tolerated(0.36)	neutral(0.446)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5929159	5929159	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017969.2	-1	validated	p.G795R	1.000	110	0%	47	27.7%	2	100%	unknown(0)	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5968511	5968511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017969.2	-1	validated	p.R574C	0.409	150	0%	85	36.5%	4	75%	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
RANBP6	26953	genome.wustl.edu	37	9	6014395	6014395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012416.2	-1	validated	p.L405I	1.000	84	0%	120	24.2%	7	28.5%	probably_damaging(0.986)	tolerated(0.07)	deleterious(0.754)	HMMPfam_HEAT,superfamily_ARM-type_fold
RANBP6	26953	genome.wustl.edu	37	9	6014708	6014708	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012416.2	-1	validated	p.P300	0.974	57	0%	133	30.8%	7	28.5%	-	-	-	superfamily_ARM-type_fold
UHRF2	115426	genome.wustl.edu	37	9	6506173	6506173	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152896.1	+1	reviewed	p.G801	1.000	181	0%	192	34.9%	44	34%	-	-	-	NULL
GLDC	2731	genome.wustl.edu	37	9	6553497	6553497	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000170.2	-1	reviewed	p.L776	0.993	174	0%	116	32.8%	2	0%	-	-	-	superfamily_PyrdxlP-dep_Trfase_major
GLDC	2731	genome.wustl.edu	37	9	6554674	6554674	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000170.2	-1	reviewed	p.I770	0.761	64	0%	43	34.9%	2	0%	-	-	-	superfamily_PyrdxlP-dep_Trfase_major
PTPRD	5789	genome.wustl.edu	37	9	8465627	8465627	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002839.3	-1	reviewed	p.E1185*	1.000	139	0%	62	21%	3	66.6%	-	-	-	NULL
PTPRD	5789	genome.wustl.edu	37	9	8484270	8484270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002839.3	-1	reviewed	p.R1088C	1.000	127	0%	106	25.5%	6	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00060,superfamily_Fibronectin type III
LURAP1L	286343	genome.wustl.edu	37	9	12775796	12775796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203403.1	+1	validated	p.L28I	1.000	7	0.000	19	0.316	5	20%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MPDZ	8777	genome.wustl.edu	37	9	13147638	13147638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003829.3	-1	validated	p.R1217I	1.000	147	0%	54	35.2%	5	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MPDZ	8777	genome.wustl.edu	37	9	13192200	13192200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003829.3	-1	validated	p.R633Q	1.000	236	0%	82	30.5%	6	66.6%	benign(0.076)	tolerated(0.09)	neutral(0.302)	HMMSmart_SM00228,superfamily_PDZ domain-like
FREM1	158326	genome.wustl.edu	37	9	14841516	14841516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144966.5	-1	reviewed	p.E604*	1.000	74	0%	33	39.4%	0	-	-	-	-	NULL
TTC39B	158219	genome.wustl.edu	37	9	15182370	15182370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152574.2	-1	validated	p.R487I	1.000	174	0.6%	100	31%	3	33.3%	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	HMMPfam_Deme6,superfamily_TPR-like
SNAPC3	6619	genome.wustl.edu	37	9	15453183	15453183	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039697.1	+1	validated	p.V320	0.998	151	0%	130	32.3%	44	43.1%	-	-	-	NULL
PSIP1	11168	genome.wustl.edu	37	9	15466799	15466799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128217.1	-1	validated	p.N493K	0.999	525	0%	259	36.3%	88	50%	possibly_damaging(0.643)	tolerated(0.39)	neutral(0.241)	NULL
PSIP1	11168	genome.wustl.edu	37	9	15469316	15469316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128217.1	-1	validated	p.R351Q	1.000	118	0%	55	27.3%	55	45.4%	possibly_damaging(0.867)	deleterious(0.01)	deleterious(0.742)	NULL
PSIP1	11168	genome.wustl.edu	37	9	15490064	15490064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128217.1	-1	validated	p.K70Q	1.000	239	0%	154	29.2%	34	55.8%	benign(0.031)	deleterious(0.04)	neutral(0.350)	HMMPfam_PWWP,superfamily_Tudor/PWWP/MBT
C9orf93	203238	genome.wustl.edu	37	9	15594145	15594145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173550.2	+1	predicted	p.R217I	1.000	90	0%	71	22.5%	0	-	benign(0.113)	deleterious(0.01)	neutral(0.415)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15777644	15777644	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000449575	+1	known	p.R146K	1.000	80	0%	107	26.2%	0	-	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15920349	15920349	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173550.2	+1	predicted	p.R1228*	1.000	95	0%	42	21.4%	5	60%	-	-	-	NULL
BNC2	54796	genome.wustl.edu	37	9	16727882	16727882	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017637.5	-1	validated	p.F81	1.000	186	0%	347	29.7%	0	-	-	-	-	NULL
CNTLN	54875	genome.wustl.edu	37	9	17366631	17366631	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017738.2	+1	validated	p.E635*	1.000	69	0%	56	28.6%	1	0%	-	-	-	NULL
FAM154A	158297	genome.wustl.edu	37	9	18928784	18928784	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153707.1	-1	predicted	p.E231*	0.998	215	0%	110	31.8%	0	-	-	-	-	NULL
FAM154A	158297	genome.wustl.edu	37	9	18941689	18941689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153707.1	-1	predicted	p.R123W	1.000	142	0%	90	32.2%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
FAM154A	158297	genome.wustl.edu	37	9	18941746	18941746	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153707.1	-1	predicted	p.T104P	0.298	139	0%	91	29.7%	0	-	possibly_damaging(0.898)	deleterious(0.01)	deleterious(0.760)	NULL
HAUS6	54801	genome.wustl.edu	37	9	19094394	19094394	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017645.3	-1	provisional	e3-1	0.696	78	0%	58	24.1%	0	-	-	-	-	-
HAUS6	54801	genome.wustl.edu	37	9	19102620	19102620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017645.3	-1	provisional	p.E10D	1.000	15	0%	31	25.8%	5	40%	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19316490	19316490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017925.4	+1	provisional	p.K285N	1.000	148	0%	73	24.7%	1	0%	benign(0.174)	tolerated(0.7)	neutral(0.018)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19316743	19316743	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017925.4	+1	provisional	p.A335	0.952	113	0%	56	26.8%	1	0%	-	-	-	HMMPfam_dDENN,HMMSmart_SM00801
DENND4C	55667	genome.wustl.edu	37	9	19328033	19328033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017925.4	+1	provisional	p.K473T	1.000	59	0%	61	24.6%	2	0%	benign(0.003)	tolerated(0.58)	neutral(0.005)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19352616	19352616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017925.4	+1	provisional	p.F1293L	1.000	178	0%	121	25.6%	9	33.3%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	NULL
DENND4C	55667	genome.wustl.edu	37	9	19358036	19358036	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017925.4	+1	provisional	p.R1395*	1.000	92	0%	56	33.9%	7	28.5%	-	-	-	NULL
MLLT3	4300	genome.wustl.edu	37	9	20414218	20414218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004529.2	-1	validated	p.K209R	1.000	388	0%	169	24.9%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20781795	20781795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017794.3	+1	validated	p.I355T	0.559	165	0%	138	33.3%	7	42.8%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20981658	20981658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017794.3	+1	validated	p.I1537M	1.000	137	0%	42	23.8%	31	54.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM-type_fold
KIAA1797	54914	genome.wustl.edu	37	9	20988420	20988420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017794.3	+1	validated	p.L1666F	0.995	153	0%	55	30.9%	40	50%	possibly_damaging(0.502)	tolerated(0.18)	neutral(0.224)	NULL
IFNW1	3467	genome.wustl.edu	37	9	21141309	21141309	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002177.1	-1	provisional	p.I87	0.030	66	0%	31	35.5%	0	-	-	-	-	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNA21	3452	genome.wustl.edu	37	9	21166381	21166381	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002175.2	-1	validated	p.I77	0.000	184	0%	95	40%	0	-	-	-	-	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
IFNA2	3440	genome.wustl.edu	37	9	21384886	21384886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000605.3	-1	validated	p.R148I	0.059	245	0%	134	23.9%	0	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_Interferon,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D,superfamily_4_helix_cytokine
IFNE	338376	genome.wustl.edu	37	9	21481373	21481373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176891.4	-1	validated	p.E107D	0.000	207	0%	84	34.5%	0	-	possibly_damaging(0.493)	tolerated(0.83)	neutral(0.165)	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
PLAA	9373	genome.wustl.edu	37	9	26905646	26905646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031689.2	-1	validated	p.T751A	1.000	147	0%	118	39.8%	37	54%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	HMMPfam_PUL,superfamily_ARM-type_fold
PLAA	9373	genome.wustl.edu	37	9	26923269	26923269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031689.2	-1	validated	p.E316*	1.000	171	0%	139	13.7%	35	5.7%	-	-	-	NULL
IFT74	80173	genome.wustl.edu	37	9	26990133	26990133	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099222.1	+1	validated	p.L176R	1.000	92	0%	41	34.1%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRC19	64922	genome.wustl.edu	37	9	26996331	26996331	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022901.2	-1	validated	p.S254	0.015	172	0%	74	24.3%	0	-	-	-	-	NULL
LRRC19	64922	genome.wustl.edu	37	9	26996404	26996404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022901.2	-1	validated	p.F230C	0.006	129	0%	66	27.3%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_L domain-like
LINGO2	158038	genome.wustl.edu	37	9	27950434	27950434	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152570.1	-1	provisional	p.S79*	0.503	169	0%	76	30.3%	0	-	-	-	-	superfamily_SSF52058
DDX58	23586	genome.wustl.edu	37	9	32477073	32477073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014314.3	-1	reviewed	p.L611I	0.998	271	0%	123	23.6%	9	55.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX58	23586	genome.wustl.edu	37	9	32480217	32480217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014314.3	-1	reviewed	p.E592K	1.000	126	0%	65	29.2%	6	16.6%	benign(0.196)	tolerated(0.06)	neutral(0.341)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX58	23586	genome.wustl.edu	37	9	32488794	32488794	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014314.3	-1	reviewed	p.A297	0.001	148	0%	54	29.6%	4	75%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TOPORS	10210	genome.wustl.edu	37	9	32544158	32544158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005802.3	-1	reviewed	p.K122T	1.000	113	0%	112	34.8%	10	40%	unknown(0)	tolerated(0.08)	-	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
TAF1L	138474	genome.wustl.edu	37	9	32630292	32630292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153809.2	-1	provisional	p.E1762D	1.000	247	0%	246	26.8%	0	-	possibly_damaging(0.62)	tolerated(0.24)	neutral(0.254)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32631459	32631459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153809.2	-1	provisional	p.K1373N	1.000	266	0%	171	38.6%	4	0%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32632006	32632006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153809.2	-1	provisional	p.R1191Q	0.998	215	0%	152	29.6%	5	0%	possibly_damaging(0.628)	deleterious(0.03)	deleterious(0.584)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633905	32633905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153809.2	-1	provisional	p.R558Q	1.000	280	0%	116	32.8%	1	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
TMEM215	401498	genome.wustl.edu	37	9	32784796	32784796	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_212558.2	+1	validated	p.I205	1.000	19	0%	17	58.8%	2	0%	-	-	-	NULL
APTX	54840	genome.wustl.edu	37	9	32984659	32984659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175073.1	-1	reviewed	p.R247Q	0.998	133	0%	68	23.5%	68	35.2%	possibly_damaging(0.766)	tolerated(0.11)	deleterious(0.555)	HMMPfam_HIT,superfamily_HIT-like,PatternScan_HIT_1
NFX1	4799	genome.wustl.edu	37	9	33294587	33294587	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002504.3	+1	reviewed	p.I65	0.191	67	0%	98	33.7%	14	42.8%	-	-	-	NULL
NFX1	4799	genome.wustl.edu	37	9	33342822	33342822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002504.3	+1	reviewed	p.R732C	1.000	164	0%	97	26.8%	43	30.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-NF-X1,HMMSmart_SM00438
NOL6	65083	genome.wustl.edu	37	9	33467499	33467499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022917.4	-1	reviewed	p.D540N	0.854	151	0%	159	37.1%	30	33.3%	benign(0.001)	tolerated(0.52)	neutral(0.009)	HMMPfam_Nrap
ANKRD18B	441459	genome.wustl.edu	37	9	33529031	33529031	+	Missense_Mutation	SNP	A	A	C	rs2890510		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001718334.2	+1	model	p.I247L	0.979	135	0%	191	31.9%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD18B	441459	genome.wustl.edu	37	9	33533527	33533527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001718334.2	+1	model	p.V324I	0.001	274	0%	181	23.8%	0	-	benign(0.017)	tolerated(0.3)	neutral(0.029)	HMMPfam_Ank,superfamily_Ankyrin repeat
ANKRD18B	441459	genome.wustl.edu	37	9	33536929	33536929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001718334.2	+1	model	p.R393Q	0.001	159	0%	97	25.8%	0	-	benign(0.247)	tolerated(0.48)	neutral(0.036)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33558129	33558129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001718334.2	+1	model	p.D868Y	0.045	122	0%	51	37.3%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
UBE2R2	54926	genome.wustl.edu	37	9	33900191	33900191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017811.3	+1	reviewed	p.S95L	1.000	139	0%	107	29%	118	33.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UQ_con,HMMSmart_SM00212,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBC-like
UBAP2	55833	genome.wustl.edu	37	9	33927891	33927891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018449.2	-1	reviewed	p.S759P	0.953	58	0%	56	23.2%	21	33.3%	unknown(0)	tolerated(0.26)	-	NULL
UBAP2	55833	genome.wustl.edu	37	9	33944512	33944512	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018449.2	-1	reviewed	p.R466*	1.000	100	0%	70	42.9%	10	30%	-	-	-	NULL
UBAP2	55833	genome.wustl.edu	37	9	33989034	33989034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018449.2	-1	reviewed	p.E127*	1.000	311	0%	224	26.8%	3	0%	-	-	-	NULL
DCAF12	25853	genome.wustl.edu	37	9	34125241	34125241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015397.3	-1	reviewed	p.R38I	1.000	82	0%	116	33.6%	38	42.1%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
KIAA1161	57462	genome.wustl.edu	37	9	34372474	34372474	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000297625	-1	known	p.V122	1.000	14	0%	23	17.4%	2	0%	-	-	-	NULL
DNAI1	27019	genome.wustl.edu	37	9	34459021	34459021	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012144.2	+1	reviewed	p.A6	0.000	105	0%	193	35.2%	0	-	-	-	-	NULL
DNAI1	27019	genome.wustl.edu	37	9	34493322	34493322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012144.2	+1	reviewed	p.S271Y	1.000	78	0%	65	27.7%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	superfamily_WD40_like
LOC100288715	100288715	genome.wustl.edu	37	9	34552184	34552184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342889.1	+1	model	p.A46V	0.066	50	0%	63	20.6%	3	0%	unknown(0)	tolerated(0.59)	-	NULL
FAM205A	259308	genome.wustl.edu	37	9	34726224	34726224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001141917.1	-1	validated	p.S338Y	0.010	114	0%	92	31.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ENSG00000232067	0	genome.wustl.edu	37	9	34835440	34835440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000455647	-1	known	p.L17I	0.985	76	0%	53	30.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
KIAA1045	23349	genome.wustl.edu	37	9	34976576	34976576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015297.1	+1	validated	p.A230T	1.000	46	0%	60	31.7%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
DNAJB5	25822	genome.wustl.edu	37	9	34997191	34997191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135005.1	+1	validated	p.R400C	1.000	84	0%	118	35.6%	25	64%	probably_damaging(0.984)	tolerated(0.05)	deleterious(0.776)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
C9orf131	138724	genome.wustl.edu	37	9	35043141	35043141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203299.2	+1	validated	p.I172S	0.999	130	0%	160	39.4%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
FANCG	2189	genome.wustl.edu	37	9	35075315	35075315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004629.1	-1	reviewed	p.E481K	1.000	111	0%	182	37.9%	26	34.6%	possibly_damaging(0.83)	tolerated(0.15)	deleterious(0.556)	superfamily_TPR-like
FAM214B	80256	genome.wustl.edu	37	9	35105274	35105274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025182.2	-1	predicted	p.E521K	1.000	70	0%	158	31.6%	12	50%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
LOC730110	730110	genome.wustl.edu	37	9	35148317	35148317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342891.1	-1	model	p.E289*	0.208	66	0%	52	25%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CA9	768	genome.wustl.edu	37	9	35676201	35676201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001216.2	+1	reviewed	p.E249K	1.000	25	0%	39	25.6%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1
TLN1	7094	genome.wustl.edu	37	9	35700370	35700370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006289.3	-1	reviewed	p.F2160V	1.000	29	0%	23	43.5%	180	33.3%	benign(0.346)	tolerated(0.18)	neutral(0.166)	NULL
RGP1	9827	genome.wustl.edu	37	9	35751404	35751404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080496.1	+1	provisional	p.S250N	1.000	89	0%	131	36.6%	8	25%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_Rgp1
SPAG8	26206	genome.wustl.edu	37	9	35810551	35810551	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172312.1	-1	reviewed	e5-1	0.989	160	0%	206	29.1%	1	0%	-	-	-	-
CCIN	881	genome.wustl.edu	37	9	36169538	36169538	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005893.2	+1	reviewed	p.F13	0.910	75	0%	115	29.6%	0	-	-	-	-	superfamily_POZ domain
CCIN	881	genome.wustl.edu	37	9	36171159	36171159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005893.2	+1	reviewed	p.D554Y	1.000	32	0%	40	20%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
RNF38	152006	genome.wustl.edu	37	9	36351148	36351148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022781.4	-1	reviewed	p.E409D	1.000	124	0%	88	22.7%	14	28.5%	benign(0.006)	tolerated(0.67)	neutral(0.003)	NULL
RNF38	152006	genome.wustl.edu	37	9	36353177	36353177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022781.4	-1	reviewed	p.S354F	1.000	149	0%	65	38.5%	16	56.2%	possibly_damaging(0.918)	deleterious(0.01)	deleterious(0.774)	NULL
PAX5	5079	genome.wustl.edu	37	9	37020790	37020790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016734.1	-1	reviewed	p.G19R	1.000	82	0%	90	38.9%	1	0%	probably_damaging(0.984)	tolerated(0.21)	deleterious(0.474)	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like
ZBTB5	9925	genome.wustl.edu	37	9	37441319	37441319	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014872.2	-1	validated	p.S410	0.885	75	0%	63	30.2%	13	46.1%	-	-	-	NULL
LOC647013	647013	genome.wustl.edu	37	9	37477442	37477442	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726034.2	+1	model	p.Y99*	0.993	76	0%	89	24.7%	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
LOC647013	647013	genome.wustl.edu	37	9	37477851	37477851	+	Nonsense_Mutation	SNP	C	C	T	rs78618032	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726034.2	+1	model	p.R236*	0.998	71	0%	55	32.7%	0	-	-	-	-	NULL
POLR1E	64425	genome.wustl.edu	37	9	37487880	37487880	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022490.1	+1	provisional	p.L67	1.000	178	0%	261	30.3%	21	33.3%	-	-	-	HMMPfam_RNA_pol_I_A49
FBXO10	26267	genome.wustl.edu	37	9	37512665	37512665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012166.2	-1	validated	p.S917Y	0.994	49	0%	38	28.9%	5	20%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37735588	37735588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014907.2	+1	validated	p.A420T	1.000	97	0%	80	12.5%	1	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37740516	37740516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014907.2	+1	validated	p.R664I	0.370	27	0%	32	37.5%	1	0%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37744838	37744838	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014907.2	+1	validated	p.R937*	0.362	51	0%	86	32.6%	0	-	-	-	-	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37745905	37745905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014907.2	+1	validated	p.E1292D	0.030	109	0%	177	39.5%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
RG9MTD3	158234	genome.wustl.edu	37	9	37761989	37761989	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144964.2	+1	validated	p.E21*	0.603	50	0%	49	10.2%	6	0%	-	-	-	NULL
RG9MTD3	158234	genome.wustl.edu	37	9	37762614	37762614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144964.2	+1	validated	p.V76A	0.999	103	0%	120	26.7%	2	50%	possibly_damaging(0.775)	tolerated(0.07)	deleterious(0.607)	NULL
DCAF10	79269	genome.wustl.edu	37	9	37860137	37860137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024345.3	+1	validated	p.P420T	1.000	55	0%	43	39.5%	28	39.2%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	superfamily_WD40 repeat-like
DCAF10	79269	genome.wustl.edu	37	9	37861311	37861311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024345.3	+1	validated	p.R496C	1.000	152	0%	55	32.7%	23	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
ANKRD18A	253650	genome.wustl.edu	37	9	38572020	38572020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000357072	-1	known	p.S137Y	0.011	87	0%	29	37.9%	0	-	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	NULL
ANKRD18A	253650	genome.wustl.edu	37	9	38575659	38575659	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000399703	-1	known	p.L926	0.003	160	0%	86	31.4%	0	-	-	-	-	NULL
CNTNAP3	79937	genome.wustl.edu	37	9	39088554	39088554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033655.3	-1	reviewed	p.S1029Y	0.754	157	0%	121	14%	2	0%	possibly_damaging(0.87)	tolerated(0.06)	deleterious(0.661)	superfamily_Concanavalin A-like lectins/glucanases
CNTNAP3	79937	genome.wustl.edu	37	9	39171462	39171462	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033655.3	-1	reviewed	p.R413*	0.000	38	0%	24	25%	8	25%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CNTNAP3	79937	genome.wustl.edu	37	9	39178253	39178253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033655.3	-1	reviewed	p.M215V	0.546	130	0%	49	32.7%	1	0%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
FAM74A3	728495	genome.wustl.edu	37	9	40716164	40716164	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026801.1	+1	predicted	NULL	0.024	382	0%	242	31.4%	0	-	-	-	-	-
ZNF658	26149	genome.wustl.edu	37	9	40774106	40774106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033160.5	-1	validated	p.R390I	0.009	330	0%	145	29.7%	2	100%	benign(0.278)	deleterious(0.01)	neutral(0.435)	superfamily_C2H2 and C2HC zinc fingers
LOC389722	389722	genome.wustl.edu	37	9	43818146	43818146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342910.1	+1	model	p.E345K	1.000	160	0%	62	19.4%	4	50%	benign(0.005)	deleterious(0.04)	neutral(0.349)	NULL
FAM122A	116224	genome.wustl.edu	37	9	71395691	71395691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138333.3	+1	validated	p.R204K	1.000	111	0%	182	41.8%	20	35%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
PIP5K1B	8395	genome.wustl.edu	37	9	71549846	71549846	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003558.2	+1	validated	p.I414	0.140	77	0%	28	21.4%	13	53.8%	-	-	-	NULL
APBA1	320	genome.wustl.edu	37	9	72131027	72131027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001163.3	-1	reviewed	p.S367L	1.000	32	0%	72	38.9%	1	0%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
MAMDC2	256691	genome.wustl.edu	37	9	72741211	72741211	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153267.4	+1	validated	p.V260	0.995	52	0%	21	23.8%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
TRPM3	80036	genome.wustl.edu	37	9	73151867	73151867	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007471.2	-1	reviewed	p.E1376*	1.000	103	0%	109	36.7%	0	-	-	-	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73296482	73296482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007471.2	-1	reviewed	p.R429W	1.000	177	0%	130	30.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73399135	73399135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007471.2	-1	reviewed	p.S345L	0.998	91	0%	54	44.4%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
C9orf57	138240	genome.wustl.edu	37	9	74667276	74667276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128618.1	-1	validated	p.R141I	0.018	202	0%	84	29.8%	0	-	possibly_damaging(0.681)	-	-	NULL
ZFAND5	7763	genome.wustl.edu	37	9	74974438	74974438	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102420.1	-1	validated	e3-1	1.000	164	0%	197	32.5%	1	100%	-	-	-	-
TMC1	117531	genome.wustl.edu	37	9	75403378	75403378	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138691.2	+1	reviewed	p.N336K	0.822	82	0%	35	40%	1	100%	benign(0.104)	deleterious(0.02)	neutral(0.391)	NULL
ALDH1A1	216	genome.wustl.edu	37	9	75555069	75555069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000689.3	-1	reviewed	p.D56N	1.000	163	0%	82	26.8%	223	15.2%	possibly_damaging(0.914)	tolerated(0.05)	deleterious(0.712)	HMMPfam_Aldedh,superfamily_ALDH-like
RORB	6096	genome.wustl.edu	37	9	77282783	77282783	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006914.3	+1	reviewed	p.I359	1.000	247	0%	154	34.4%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TRPM6	140803	genome.wustl.edu	37	9	77353422	77353422	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017662.4	-1	reviewed	p.E1893*	1.000	151	0%	86	25.6%	0	-	-	-	-	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
TRPM6	140803	genome.wustl.edu	37	9	77367279	77367279	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017662.4	-1	reviewed	p.E1638*	0.999	224	0%	75	34.7%	0	-	-	-	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77473649	77473649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017662.4	-1	reviewed	p.I17V	1.000	205	0%	236	28.8%	0	-	unknown(0)	tolerated(0.06)	-	NULL
PCSK5	5125	genome.wustl.edu	37	9	78789990	78789990	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006200.3	+1	reviewed	p.F615	0.880	103	0%	49	34.7%	0	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79259806	79259806	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015225.2	-1	validated	p.D2859E	0.992	187	0%	60	35%	3	33.3%	benign(0.005)	tolerated(0.58)	neutral(0.005)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79267503	79267503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015225.2	-1	validated	p.S2818Y	0.991	182	0%	86	25.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79318925	79318925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015225.2	-1	validated	p.R2535I	0.000	155	0%	76	26.3%	1	100%	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79319792	79319792	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000426088	-1	known	p.R1788S	0.000	100	0%	50	26%	0	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79320453	79320453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015225.2	-1	validated	p.G2246D	0.000	75	0%	29	48.3%	0	-	benign(0.001)	tolerated(0.05)	neutral(0.345)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79325546	79325546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015225.2	-1	validated	p.N548K	0.991	84	0%	34	20.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79827886	79827886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033305.2	+1	reviewed	p.T186I	1.000	406	0%	224	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79891017	79891017	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033305.2	+1	reviewed	p.E902*	1.000	226	0%	118	31.4%	2	50%	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79968330	79968330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033305.2	+1	reviewed	p.M2475I	1.000	82	0%	70	34.3%	3	33.3%	benign(0.111)	tolerated(0.25)	neutral(0.045)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79975495	79975495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033305.2	+1	reviewed	p.L2717I	1.000	157	0%	66	28.8%	4	25%	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	NULL
PSAT1	29968	genome.wustl.edu	37	9	80916919	80916919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058179.2	+1	reviewed	p.E57D	0.998	308	0%	358	32.1%	68	39.7%	benign(0.14)	deleterious(0)	neutral(0.457)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
FAM75D1	389763	genome.wustl.edu	37	9	84608282	84608282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001670.2	+1	validated	p.R966Q	0.000	93	0%	48	37.5%	0	-	unknown(0)	tolerated(0.32)	-	NULL
FRMD3	257019	genome.wustl.edu	37	9	85924481	85924481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174938.4	-1	validated	p.K299T	1.000	74	0%	115	24.3%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_FERM_C,superfamily_PH domain-like
UBQLN1	29979	genome.wustl.edu	37	9	86278894	86278894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013438.4	-1	reviewed	p.A505T	0.062	193	0%	73	26%	127	43.3%	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
GKAP1	80318	genome.wustl.edu	37	9	86383794	86383794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025211.3	-1	reviewed	p.R226Q	1.000	373	0%	204	28.9%	2	50%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
C9orf64	84267	genome.wustl.edu	37	9	86570410	86570410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032307.3	-1	validated	p.E161D	1.000	85	0%	142	33.8%	18	55.5%	probably_damaging(0.991)	tolerated(0.34)	neutral(0.467)	HMMPfam_DUF2419
NTRK2	4915	genome.wustl.edu	37	9	87317089	87317089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006180.3	+1	reviewed	p.Q76H	1.000	124	0%	82	12.2%	0	-	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	superfamily_SSF52058
NTRK2	4915	genome.wustl.edu	37	9	87342828	87342828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006180.3	+1	reviewed	p.E371D	0.818	132	0%	102	33.3%	0	-	possibly_damaging(0.758)	tolerated(0.36)	neutral(0.301)	superfamily_SSF48726
AGTPBP1	23287	genome.wustl.edu	37	9	88207502	88207502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015239.2	-1	validated	p.H807Q	0.994	119	0%	83	20.5%	6	33.3%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	superfamily_SSF53187
AGTPBP1	23287	genome.wustl.edu	37	9	88248039	88248039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015239.2	-1	validated	p.R478I	0.037	155	0%	86	30.2%	3	66.6%	benign(0.117)	deleterious(0.01)	neutral(0.415)	NULL
C9orf153	389766	genome.wustl.edu	37	9	88842858	88842858	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010907.1	-1	predicted	p.E52*	0.865	172	0%	79	36.7%	0	-	-	-	-	NULL
ZCCHC6	79670	genome.wustl.edu	37	9	88967750	88967750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024617.3	-1	validated	p.I122S	1.000	356	0%	491	12.6%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DAPK1	1612	genome.wustl.edu	37	9	90254710	90254710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000489291	+1	known	p.S187L	0.983	423	0.2%	296	29.4%	1	0%	unknown(0)	-	-	HMMSmart_SM00220
CTSL1	1514	genome.wustl.edu	37	9	90342977	90342977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001912.4	+1	reviewed	p.K54N	1.000	278	0%	442	26.9%	227	9.2%	benign(0.039)	tolerated(0.21)	neutral(0.046)	HMMPfam_Inhibitor_I29,superfamily_SSF54001
C9orf79	286234	genome.wustl.edu	37	9	90498026	90498026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178828.4	+1	validated	p.C74R	0.017	53	0%	100	15%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90535223	90535223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145124.1	+1	validated	p.P134L	0.000	233	0%	221	28.5%	0	-	-	-	-	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90536003	90536003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145124.1	+1	validated	p.A394V	0.007	120	0%	138	32.6%	0	-	-	-	-	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90536422	90536422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145124.1	+1	validated	p.L534I	0.010	68	0%	86	34.9%	0	-	-	-	-	NULL
LOC286238	286238	genome.wustl.edu	37	9	91262450	91262450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100111.1	-1	validated	p.H65N	0.006	159	0%	119	26.9%	0	-	-	-	-	NULL
SYK	6850	genome.wustl.edu	37	9	93624611	93624611	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003177.5	+1	reviewed	p.F234	0.999	50	0%	38	34.2%	40	25%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
NFIL3	4783	genome.wustl.edu	37	9	94171921	94171921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005384.2	-1	validated	p.E366K	0.989	103	0%	132	37.9%	25	52%	benign(0.4)	deleterious(0.02)	deleterious(0.512)	HMMPfam_Vert_IL3-reg_TF
NFIL3	4783	genome.wustl.edu	37	9	94172928	94172928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005384.2	-1	validated	p.S30Y	0.061	58	1.7%	87	17.2%	15	26.6%	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	NULL
ROR2	4920	genome.wustl.edu	37	9	94487377	94487377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004560.2	-1	reviewed	p.E467K	1.000	80	0%	94	25.5%	3	66.6%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_Kinase_like
SPTLC1	10558	genome.wustl.edu	37	9	94794708	94794708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000415466	-1	known	p.A477T	0.000	55	1.8%	49	38.8%	88	47.7%	-	-	-	NULL
NOL8	55035	genome.wustl.edu	37	9	95077675	95077675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017948.5	-1	validated	p.S411Y	0.481	111	0%	84	36.9%	6	50%	benign(0.354)	tolerated(0.1)	neutral(0.398)	NULL
ASPN	54829	genome.wustl.edu	37	9	95222803	95222803	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017680.3	-1	validated	p.I253M	0.986	283	0%	135	34.8%	0	-	benign(0.056)	deleterious(0.02)	neutral(0.387)	superfamily_SSF52058
ECM2	1842	genome.wustl.edu	37	9	95280056	95280056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001393.2	-1	reviewed	p.L132I	0.990	128	0%	69	15.9%	1	0%	possibly_damaging(0.753)	tolerated(0.3)	neutral(0.305)	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1
ENSG00000218940	0	genome.wustl.edu	37	9	95576199	95576199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000375504	+1	known	p.E122G	0.780	111	0%	202	28.2%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ZNF484	83744	genome.wustl.edu	37	9	95609270	95609270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031486.1	-1	provisional	p.R600I	1.000	154	0%	114	32.5%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF484	83744	genome.wustl.edu	37	9	95610607	95610607	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031486.1	-1	provisional	p.E154D	0.001	272	0.4%	258	32.6%	5	40%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
ZNF484	83744	genome.wustl.edu	37	9	95618570	95618570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031486.1	-1	provisional	p.D16Y	0.832	168	0%	101	27.7%	6	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
FGD3	89846	genome.wustl.edu	37	9	95776151	95776151	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083536.1	+1	validated	p.L351	0.770	67	0%	77	32.5%	7	28.5%	-	-	-	superfamily_DBL homology domain (DH-domain),superfamily_PH domain-like
FGD3	89846	genome.wustl.edu	37	9	95782125	95782125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083536.1	+1	validated	p.E456D	1.000	239	0%	342	27.2%	6	0%	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,superfamily_PH domain-like
PHF2	5253	genome.wustl.edu	37	9	96415497	96415497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005392.3	+1	reviewed	p.K213N	1.000	73	0%	115	33%	22	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_JmjC,superfamily_SSF51197
PTPDC1	138639	genome.wustl.edu	37	9	96857615	96857615	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152422.3	+1	reviewed	p.F209	0.793	173	0%	262	35.5%	1	0%	-	-	-	superfamily_SSF52799
FAM22F	54754	genome.wustl.edu	37	9	97080927	97080927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000434357	-1	known	p.E597*	0.036	150	0%	182	25.3%	0	-	probably_damaging(0.998)	tolerated(0.28)	deleterious(0.506)	NULL
PTCH1	5727	genome.wustl.edu	37	9	98240408	98240408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000264.3	-1	reviewed	p.T426A	0.996	145	0%	144	35.4%	6	50%	possibly_damaging(0.67)	tolerated(0.36)	neutral(0.258)	HMMPfam_Patched,superfamily_SSF82866
PTCH1	5727	genome.wustl.edu	37	9	98244448	98244448	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000264.3	-1	reviewed	p.E208*	1.000	157	0%	146	30.8%	1	100%	-	-	-	NULL
C9orf102	375748	genome.wustl.edu	37	9	98683470	98683470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010895.2	+1	validated	p.S402Y	1.000	142	0%	65	32.3%	6	66.6%	benign(0.378)	tolerated(0.07)	neutral(0.440)	HMMPfam_SNF2_N
C9orf102	375748	genome.wustl.edu	37	9	98728850	98728850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010895.2	+1	validated	p.H663N	1.000	205	0%	54	33.3%	6	50%	benign(0.124)	deleterious(0.03)	neutral(0.374)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CDC14B	8555	genome.wustl.edu	37	9	99285664	99285664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033331.2	-1	reviewed	p.R375H	0.961	233	0%	164	20.7%	11	45.4%	possibly_damaging(0.477)	tolerated(0.06)	deleterious(0.480)	superfamily_(Phosphotyrosine protein) phosphatases II
ZNF782	158431	genome.wustl.edu	37	9	99580896	99580896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001662.1	-1	provisional	p.R470I	1.000	199	0%	107	33.6%	3	33.3%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF782	158431	genome.wustl.edu	37	9	99581064	99581064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001662.1	-1	provisional	p.R414I	0.999	271	0%	139	30.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF782	158431	genome.wustl.edu	37	9	99589390	99589390	+	Nonsense_Mutation	SNP	C	C	A	rs34630409		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000289032	-1	known	p.E61*	0.000	138	0%	77	37.7%	1	100%	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100086125	100086125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020893.1	+1	predicted	p.F620L	0.957	104	0%	66	25.8%	1	0%	unknown(0)	tolerated(0.67)	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100092629	100092629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020893.1	+1	predicted	p.K801N	0.001	142	0%	87	10.3%	1	0%	unknown(0)	deleterious(0.04)	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100105708	100105708	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020893.1	+1	predicted	p.V970	0.992	81	0%	89	29.2%	1	0%	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100137804	100137804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020893.1	+1	predicted	p.S1581L	0.001	88	0%	109	22.9%	9	55.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
TDRD7	23424	genome.wustl.edu	37	9	100234629	100234629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014290.2	+1	validated	p.T599N	0.912	111	0%	47	38.3%	12	41.6%	possibly_damaging(0.846)	tolerated(0.05)	deleterious(0.670)	NULL
NCBP1	4686	genome.wustl.edu	37	9	100405549	100405549	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002486.4	+1	reviewed	p.R96	0.996	184	0%	170	31.2%	7	42.8%	-	-	-	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
HEMGN	55363	genome.wustl.edu	37	9	100689687	100689687	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018437.3	-1	validated	p.V478	0.002	318	0%	420	27.1%	0	-	-	-	-	NULL
HEMGN	55363	genome.wustl.edu	37	9	100693497	100693497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018437.3	-1	validated	p.Q60H	1.000	229	0.4%	200	26%	0	-	possibly_damaging(0.855)	deleterious(0.02)	deleterious(0.713)	NULL
GABBR2	9568	genome.wustl.edu	37	9	101056070	101056070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005458.7	-1	reviewed	p.E886A	1.000	329	0%	276	35.9%	1	0%	possibly_damaging(0.891)	deleterious(0.02)	deleterious(0.734)	NULL
GABBR2	9568	genome.wustl.edu	37	9	101243257	101243257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005458.7	-1	reviewed	p.L252R	1.000	90	0%	81	23.5%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_ANF_receptor,superfamily_SSF53822
ANKS6	203286	genome.wustl.edu	37	9	101536358	101536358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173551.3	-1	provisional	p.R541Q	0.996	41	0%	42	33.3%	13	69.2%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
COL15A1	1306	genome.wustl.edu	37	9	101777744	101777744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001855.3	+1	reviewed	p.E467K	0.001	57	0%	47	40.4%	12	0%	benign(0.004)	tolerated(0.61)	neutral(0.004)	NULL
STX17	55014	genome.wustl.edu	37	9	102713391	102713391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017919.2	+1	validated	p.R80Q	0.040	94	0%	49	34.7%	8	37.5%	benign(0.01)	tolerated(0.3)	neutral(0.029)	superfamily_t-snare
ERP44	23071	genome.wustl.edu	37	9	102768915	102768915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015051.1	-1	validated	p.L297V	1.000	138	0%	102	18.6%	99	18.1%	benign(0.308)	deleterious(0)	deleterious(0.540)	NULL
INVS	27130	genome.wustl.edu	37	9	103002492	103002492	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014425.2	+1	reviewed	p.R256*	1.000	80	0%	38	34.2%	5	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TEX10	54881	genome.wustl.edu	37	9	103082673	103082673	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017746.3	-1	validated	p.S692	0.933	54	0%	35	28.6%	26	34.6%	-	-	-	NULL
LPPR1	54886	genome.wustl.edu	37	9	104048497	104048497	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017753.2	+1	reviewed	p.R122*	1.000	98	0%	71	31%	0	-	-	-	-	superfamily_AcPase_VanPerase
ZNF189	7743	genome.wustl.edu	37	9	104170739	104170739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003452.2	+1	validated	p.R230I	1.000	98	0%	48	33.3%	5	40%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_C2H2 and C2HC zinc fingers
RNF20	56254	genome.wustl.edu	37	9	104302516	104302516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019592.5	+1	reviewed	p.K54T	0.999	68	0%	59	44.1%	16	37.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PPP3R2	5535	genome.wustl.edu	37	9	104356985	104356985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_147180.2	-1	provisional	p.K76N	0.477	79	0%	90	37.8%	0	-	possibly_damaging(0.467)	tolerated(0.17)	neutral(0.212)	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
GRIN3A	116443	genome.wustl.edu	37	9	104432555	104432555	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133445.2	-1	reviewed	p.V713	1.000	88	0%	31	25.8%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRIN3A	116443	genome.wustl.edu	37	9	104449448	104449448	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133445.2	-1	reviewed	p.S245*	1.000	74	0%	43	34.9%	0	-	-	-	-	superfamily_SSF53822
GRIN3A	116443	genome.wustl.edu	37	9	104499750	104499750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133445.2	-1	reviewed	p.S171L	0.993	72	0%	141	36.9%	0	-	benign(0.139)	deleterious(0.02)	neutral(0.395)	superfamily_SSF53822
SMC2	10592	genome.wustl.edu	37	9	106901422	106901422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042550.1	+1	validated	p.F1140L	1.000	110	0%	40	30%	100	58%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR13F1	138805	genome.wustl.edu	37	9	107267361	107267361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004485.1	+1	provisional	p.F273C	0.987	95	0%	61	29.5%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
OR13C4	138804	genome.wustl.edu	37	9	107288862	107288862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001919.1	-1	provisional	p.P210H	0.216	112	0.9%	82	36.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR13C4	138804	genome.wustl.edu	37	9	107288890	107288890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001919.1	-1	provisional	p.V201M	0.001	112	0%	76	34.2%	0	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	HMMPfam_7tm_1,superfamily_SSF81321
ABCA1	19	genome.wustl.edu	37	9	107550828	107550828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005502.2	-1	reviewed	p.E1983A	1.000	91	0%	58	22.4%	15	46.6%	benign(0.039)	tolerated(0.52)	neutral(0.011)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA1	19	genome.wustl.edu	37	9	107593915	107593915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005502.2	-1	reviewed	p.K568T	1.000	250	0%	158	39.2%	8	37.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ABCA1	19	genome.wustl.edu	37	9	107651416	107651416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005502.2	-1	reviewed	p.R43W	0.998	63	0%	47	21.3%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109689356	109689356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021224.4	+1	validated	p.E1055K	1.000	169	0%	243	28.8%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24
ZNF462	58499	genome.wustl.edu	37	9	109690322	109690322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021224.4	+1	validated	p.E1377K	1.000	40	0%	54	29.6%	3	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMSmart_SM00355,superfamily_beta-sandwich domain of Sec23/24
RAD23B	5887	genome.wustl.edu	37	9	110091866	110091866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002874.3	+1	reviewed	p.Y387H	1.000	126	0%	82	31.7%	160	51.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UBA,superfamily_UBA-like,HMMSmart_SM00165
CTNNAL1	8727	genome.wustl.edu	37	9	111732758	111732758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003798.2	-1	provisional	p.R455Q	0.998	114	0%	62	35.5%	29	82.7%	probably_damaging(0.995)	tolerated(0.43)	deleterious(0.471)	superfamily_alpha-catenin/vinculin
CTNNAL1	8727	genome.wustl.edu	37	9	111739244	111739244	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003798.2	-1	provisional	p.E396*	1.000	291	0%	122	24.6%	23	4.3%	-	-	-	superfamily_alpha-catenin/vinculin
FRRS1L	23732	genome.wustl.edu	37	9	111909349	111909349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014334.2	-1	validated	p.F199L	1.000	217	0%	175	34.3%	10	60%	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	HMMSmart_DoH,HMMPfam_DOMON
PTPN3	5774	genome.wustl.edu	37	9	112225638	112225638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002829.3	-1	reviewed	p.R26Q	0.993	165	0%	116	31%	3	66.6%	probably_damaging(0.996)	tolerated(0.68)	neutral(0.464)	HMMSmart_B41,superfamily_SSF54236
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112778280	112778280	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007203.4	+1	validated	p.S181	0.000	128	0.8%	74	33.8%	3	0%	-	-	-	NULL
TXNDC8	255220	genome.wustl.edu	37	9	113096601	113096601	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003936.2	-1	validated	e2-1	0.998	65	0%	25	32%	0	-	-	-	-	-
SVEP1	79987	genome.wustl.edu	37	9	113166751	113166751	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153366.3	-1	validated	p.I3174	0.994	152	0%	73	34.2%	13	7.6%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113168845	113168845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153366.3	-1	validated	p.I3012S	0.998	47	0%	24	33.3%	4	0%	possibly_damaging(0.814)	tolerated(0.34)	neutral(0.331)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113169271	113169271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153366.3	-1	validated	p.S2870I	0.358	32	0%	37	32.4%	6	0%	probably_damaging(0.959)	tolerated(0.16)	neutral(0.462)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113213626	113213626	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153366.3	-1	validated	p.G1282*	0.990	202	0%	233	31.8%	1	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
SVEP1	79987	genome.wustl.edu	37	9	113228183	113228183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153366.3	-1	validated	p.T1095I	1.000	139	0%	104	33.7%	1	0%	possibly_damaging(0.901)	tolerated(0.21)	neutral(0.401)	superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3
SVEP1	79987	genome.wustl.edu	37	9	113238569	113238569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153366.3	-1	validated	p.E838D	1.000	179	0%	89	32.6%	2	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
MUSK	4593	genome.wustl.edu	37	9	113530085	113530085	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000189978	+1	known	p.F308	0.827	45	0%	45	24.4%	0	-	-	-	-	NULL
MUSK	4593	genome.wustl.edu	37	9	113547226	113547226	+	Missense_Mutation	SNP	A	A	C	rs191581729	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005592.3	+1	reviewed	p.I506L	0.000	221	0%	314	29.6%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
OR2K2	26248	genome.wustl.edu	37	9	114090717	114090717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000374428	-1	known	p.K28N	0.001	43	0%	13	30.8%	0	-	possibly_damaging(0.605)	tolerated(0.12)	deleterious(0.470)	superfamily_SSF81321
KIAA0368	23392	genome.wustl.edu	37	9	114148706	114148706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080398.1	-1	provisional	p.D1338N	1.000	77	0%	67	31.3%	29	27.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
ZNF483	158399	genome.wustl.edu	37	9	114304768	114304768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133464.2	+1	validated	p.T518I	1.000	63	0%	38	28.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
C9orf84	158401	genome.wustl.edu	37	9	114490010	114490010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173521.3	-1	validated	p.E515D	0.036	173	0%	91	26.4%	0	-	possibly_damaging(0.459)	tolerated(0.47)	neutral(0.162)	NULL
KIAA1958	158405	genome.wustl.edu	37	9	115336975	115336975	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133465.2	+1	predicted	p.Q205H	0.997	93	0%	49	28.6%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA1958	158405	genome.wustl.edu	37	9	115421604	115421604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133465.2	+1	predicted	p.D469G	1.000	20	0%	28	25%	6	66.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
ZFP37	7539	genome.wustl.edu	37	9	115805505	115805505	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003408.1	-1	provisional	p.E465*	0.855	162	0%	59	27.1%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
POLE3	54107	genome.wustl.edu	37	9	116171017	116171017	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_027261.1	-1	validated	NULL	0.000	214	0%	315	35.2%	66	46.9%	-	-	-	-
RGS3	5998	genome.wustl.edu	37	9	116291526	116291526	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000496113	+1	known	p.R87C	0.852	174	0%	126	34.1%	12	50%	-	-	-	NULL
COL27A1	85301	genome.wustl.edu	37	9	116958293	116958293	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032888.2	+1	validated	e7+1	1.000	116	0%	99	26.3%	0	-	-	-	-	-
C9orf91	203197	genome.wustl.edu	37	9	117399288	117399288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153045.3	+1	validated	p.D202N	0.995	194	0%	152	28.9%	10	40%	benign(0.019)	tolerated(0.05)	neutral(0.346)	NULL
TNC	3371	genome.wustl.edu	37	9	117838850	117838850	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002160.2	-1	validated	p.L893	1.000	141	0.7%	94	34%	86	32.5%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PAPPA	5069	genome.wustl.edu	37	9	118982246	118982246	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002581.3	+1	reviewed	p.N650T	1.000	90	0%	33	27.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Peptidase_M43,superfamily_SSF55486
ASTN2	23245	genome.wustl.edu	37	9	119202920	119202920	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000417725	-1	known	p.S32L	0.996	131	0%	85	24.7%	2	50%	-	-	-	NULL
ASTN2	23245	genome.wustl.edu	37	9	119625984	119625984	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198187.3	-1	reviewed	p.E640*	1.000	119	0%	68	33.8%	3	0%	-	-	-	NULL
TLR4	7099	genome.wustl.edu	37	9	120475412	120475412	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138554.3	+1	reviewed	p.E336*	0.001	69	0%	27	18.5%	3	33.3%	-	-	-	superfamily_L domain-like
PHF19	26147	genome.wustl.edu	37	9	123625009	123625009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015651.1	-1	validated	p.E329D	1.000	123	0%	139	31.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C5	727	genome.wustl.edu	37	9	123744973	123744973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001735.2	-1	reviewed	p.S1117Y	1.000	140	0%	101	35.6%	1	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp
C5	727	genome.wustl.edu	37	9	123789501	123789501	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001735.2	-1	reviewed	p.G270	1.000	302	0%	471	31.4%	0	-	-	-	-	NULL
C5	727	genome.wustl.edu	37	9	123805327	123805327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001735.2	-1	reviewed	p.L126I	1.000	182	0%	86	32.6%	0	-	possibly_damaging(0.595)	tolerated(0.19)	neutral(0.256)	HMMPfam_A2M_N
STOM	2040	genome.wustl.edu	37	9	124111437	124111437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004099.4	-1	validated	p.Q162H	1.000	169	0%	54	35.2%	38	13.1%	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	HMMPfam_Band_7,HMMSmart_PHB
PTGS1	5742	genome.wustl.edu	37	9	125133402	125133402	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000373698	+1	known	p.I13M	0.000	69	0%	122	26.2%	0	-	-	-	-	NULL
OR1J2	26740	genome.wustl.edu	37	9	125273307	125273307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054107.1	+1	provisional	p.V76A	0.017	262	0%	231	35.5%	0	-	probably_damaging(0.973)	tolerated(0.22)	neutral(0.457)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L1	26737	genome.wustl.edu	37	9	125423938	125423938	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005236.3	+1	validated	p.S32A	0.000	88	0%	63	25.4%	0	-	benign(0)	-	-	NULL
OR1L3	26735	genome.wustl.edu	37	9	125437699	125437699	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005234.1	+1	provisional	p.C97W	0.089	192	0%	83	33.7%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1L6	392390	genome.wustl.edu	37	9	125513035	125513035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004453.2	+1	validated	p.K339N	0.635	126	0%	90	31.1%	0	-	benign(0.032)	tolerated(0.23)	neutral(0.043)	superfamily_SSF81321
ZBTB26	57684	genome.wustl.edu	37	9	125682122	125682122	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020924.2	-1	provisional	p.K31T	1.000	59	0%	66	22.7%	0	-	possibly_damaging(0.832)	tolerated(0.13)	deleterious(0.570)	superfamily_BTB/POZ_fold,HMMPfam_BTB
RABGAP1	23637	genome.wustl.edu	37	9	125852122	125852122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012197.3	+1	validated	p.R837Q	1.000	116	0%	66	36.4%	41	53.6%	benign(0.258)	tolerated(0.15)	neutral(0.268)	NULL
DENND1A	57706	genome.wustl.edu	37	9	126345511	126345511	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020946.1	-1	validated	p.L268	1.000	122	0%	66	27.3%	11	0%	-	-	-	HMMPfam_DENN,HMMSmart_SM00799
DENND1A	57706	genome.wustl.edu	37	9	126429350	126429350	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020946.1	-1	validated	p.Y154*	1.000	106	0%	42	21.4%	12	58.3%	-	-	-	HMMPfam_DENN,HMMSmart_SM00799
NR5A1	2516	genome.wustl.edu	37	9	127262899	127262899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004959.4	-1	reviewed	p.R114W	1.000	50	0%	51	29.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nuclear receptor ligand-binding domain
NR6A1	2649	genome.wustl.edu	37	9	127302449	127302449	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033334.2	-1	reviewed	p.I153	0.699	166	0%	84	32.1%	2	0%	-	-	-	superfamily_Nuclear receptor ligand-binding domain
OLFML2A	169611	genome.wustl.edu	37	9	127572090	127572090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182487.2	+1	validated	p.R453H	1.000	40	0%	93	33.3%	4	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_OLF,HMMSmart_SM00284
SCAI	286205	genome.wustl.edu	37	9	127818204	127818204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173690.4	-1	reviewed	p.D84Y	1.000	170	0%	130	10.8%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PPP6C	5537	genome.wustl.edu	37	9	127912146	127912146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123355.1	-1	reviewed	p.E279K	0.998	174	0%	197	24.9%	95	32.6%	possibly_damaging(0.69)	deleterious(0)	deleterious(0.692)	HMMSmart_PP2Ac,superfamily_SSF56300
GAPVD1	26130	genome.wustl.edu	37	9	128064548	128064548	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015635.2	+1	validated	p.E158*	1.000	154	0%	81	30.9%	9	11.1%	-	-	-	HMMPfam_RasGAP,superfamily_Rho_GAP
RALGPS1	9649	genome.wustl.edu	37	9	129831562	129831562	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014636.1	+1	provisional	p.S179	0.069	158	0%	73	32.9%	3	33.3%	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RALGPS1	9649	genome.wustl.edu	37	9	129931011	129931011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014636.1	+1	provisional	p.I268L	1.000	138	0%	83	9.6%	9	0%	possibly_damaging(0.554)	tolerated(0.08)	deleterious(0.489)	HMMSmart_SM00147,superfamily_Ras GEF
SLC2A8	29988	genome.wustl.edu	37	9	130162257	130162257	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000419132	+1	known	p.S76L	0.823	179	0.6%	330	31.8%	65	40%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
LRSAM1	90678	genome.wustl.edu	37	9	130258313	130258313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005373.1	+1	validated	p.F590S	0.987	37	0%	90	13.3%	30	3.3%	possibly_damaging(0.777)	deleterious(0.01)	deleterious(0.696)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
STXBP1	6812	genome.wustl.edu	37	9	130439014	130439014	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003165.3	+1	reviewed	p.G447	0.061	38	0%	35	42.9%	33	45.4%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SH2D3C	10044	genome.wustl.edu	37	9	130513555	130513555	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000440630	-1	known	p.W30*	1.000	71	0%	117	35%	3	0%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	NULL
ENG	2022	genome.wustl.edu	37	9	130587208	130587208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114753.1	-1	reviewed	p.R288C	0.000	70	0%	160	29.4%	62	19.3%	benign(0.02)	tolerated(0.09)	neutral(0.297)	NULL
ENG	2022	genome.wustl.edu	37	9	130588869	130588869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114753.1	-1	reviewed	p.E148G	0.055	95	0%	154	38.3%	37	13.5%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
DPM2	8818	genome.wustl.edu	37	9	130699718	130699718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003863.3	-1	reviewed	p.L30I	0.995	66	0%	125	23.2%	152	42.7%	benign(0.046)	tolerated(0.77)	neutral(0.004)	HMMPfam_DPM2
CERCAM	51148	genome.wustl.edu	37	9	131196801	131196801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016174.4	+1	validated	p.A482T	0.938	28	0%	48	29.2%	52	40.3%	benign(0.003)	tolerated(0.16)	neutral(0.059)	HMMPfam_Glyco_transf_25
SPTAN1	6709	genome.wustl.edu	37	9	131336952	131336952	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130438.1	+1	validated	e3-2	1.000	161	0%	116	31.9%	1	100%	-	-	-	-
TBC1D13	54662	genome.wustl.edu	37	9	131565682	131565682	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018201.3	+1	validated	p.E233*	1.000	121	0%	160	33.8%	28	39.2%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
NUP188	23511	genome.wustl.edu	37	9	131730845	131730845	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015354.1	+1	validated	p.E216*	1.000	148	0%	119	27.7%	9	55.5%	-	-	-	HMMPfam_Nup188
NUP188	23511	genome.wustl.edu	37	9	131756668	131756668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015354.1	+1	validated	p.N1012H	1.000	138	0%	128	21.1%	40	65%	probably_damaging(0.997)	tolerated(0.05)	deleterious(0.811)	NULL
FAM73B	84895	genome.wustl.edu	37	9	131830726	131830726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000413435	+1	known	p.D571N	0.000	10	0%	14	42.9%	5	40%	-	-	-	HMMPfam_DUF2217
C9orf50	375759	genome.wustl.edu	37	9	132377860	132377860	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199350.3	-1	validated	p.G261	0.001	35	0%	53	17%	0	-	-	-	-	NULL
ASB6	140459	genome.wustl.edu	37	9	132401493	132401493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017873.2	-1	reviewed	p.A167T	0.136	24	0%	40	17.5%	17	11.7%	possibly_damaging(0.83)	tolerated(0.25)	neutral(0.352)	HMMPfam_Ank,superfamily_Ankyrin repeat
USP20	10868	genome.wustl.edu	37	9	132632804	132632804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008563.3	+1	validated	p.F546L	1.000	151	0%	244	34%	22	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_SSF54001
FNBP1	23048	genome.wustl.edu	37	9	132691875	132691875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015033.2	-1	reviewed	p.Y205D	1.000	245	0%	154	28.6%	20	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR107	57720	genome.wustl.edu	37	9	132838690	132838690	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136557.1	+1	validated	e3-1	1.000	283	0%	243	28.8%	2	100%	-	-	-	-
FUBP3	8939	genome.wustl.edu	37	9	133485364	133485364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003934.1	+1	validated	p.V72L	1.000	242	0.4%	297	30%	33	45.4%	benign(0.124)	tolerated(0.8)	neutral(0.011)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
ABL1	25	genome.wustl.edu	37	9	133747572	133747572	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007313.2	+1	reviewed	p.I312	1.000	64	0%	92	32.6%	42	45.2%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LAMC3	10319	genome.wustl.edu	37	9	133928059	133928059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006059.3	+1	reviewed	p.E604D	0.092	37	0%	50	26%	2	0%	benign(0.235)	tolerated(0.52)	neutral(0.032)	HMMPfam_Laminin_B
LAMC3	10319	genome.wustl.edu	37	9	133942450	133942450	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006059.3	+1	reviewed	p.D817	1.000	28	0%	54	33.3%	4	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
AIF1L	83543	genome.wustl.edu	37	9	133987019	133987019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031426.3	+1	validated	p.E43D	0.983	69	0%	148	33.8%	25	36%	possibly_damaging(0.949)	tolerated(0.12)	deleterious(0.653)	superfamily_EF-hand
NUP214	8021	genome.wustl.edu	37	9	134014760	134014760	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005085.2	+1	reviewed	p.V366	0.999	140	0%	86	27.9%	10	70%	-	-	-	NULL
NUP214	8021	genome.wustl.edu	37	9	134050986	134050986	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005085.2	+1	reviewed	p.R1099	0.984	36	0%	30	26.7%	29	48.2%	-	-	-	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134353937	134353937	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000451855	+1	known	p.R297*	0.108	59	0%	119	31.9%	55	40%	-	-	-	NULL
SETX	23064	genome.wustl.edu	37	9	135139873	135139873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015046.5	-1	reviewed	p.A2596D	0.001	22	0%	21	28.6%	24	45.8%	benign(0.139)	deleterious(0.01)	neutral(0.418)	NULL
SETX	23064	genome.wustl.edu	37	9	135202168	135202168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015046.5	-1	reviewed	p.R1606Q	0.998	120	0%	55	40%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTF1	7270	genome.wustl.edu	37	9	135273708	135273708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007344.2	-1	validated	p.A533T	0.006	139	0%	135	28.1%	6	66.6%	benign(0.101)	tolerated(0.37)	neutral(0.026)	NULL
AK8	158067	genome.wustl.edu	37	9	135668126	135668126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152572.2	-1	validated	p.R339H	0.687	36	0%	33	15.2%	2	0%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_ADK,superfamily_P-loop containing nucleoside triphosphate hydrolases
AK8	158067	genome.wustl.edu	37	9	135702320	135702320	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152572.2	-1	validated	p.I226	0.107	96	0%	155	29.7%	1	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
TSC1	7248	genome.wustl.edu	37	9	135787796	135787796	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000368.4	-1	reviewed	p.I262	1.000	108	0%	86	24.4%	18	38.8%	-	-	-	HMMPfam_Hamartin
GTF3C5	9328	genome.wustl.edu	37	9	135917595	135917595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122823.1	+1	validated	p.T92M	0.519	34	0%	30	33.3%	150	41.3%	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	HMMPfam_Tau95
CEL	1056	genome.wustl.edu	37	9	135944204	135944204	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001807.3	+1	reviewed	p.I350	0.004	93	0%	159	10.7%	41	0%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
GBGT1	26301	genome.wustl.edu	37	9	136029550	136029550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021996.4	-1	validated	p.A153V	0.075	51	0%	64	32.8%	5	0%	benign(0.068)	tolerated(0.22)	neutral(0.046)	HMMPfam_Glyco_transf_6,superfamily_Nucleotide-diphospho-sugar transferases
ADAMTS13	11093	genome.wustl.edu	37	9	136294930	136294930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000371911	+1	known	p.R312I	0.000	16	0%	49	26.5%	1	100%	unknown(0)	deleterious(0.01)	-	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136324376	136324376	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_024514.1	+1	reviewed	NULL	0.000	21	0%	20	80%	3	100%	-	-	-	-
SLC2A6	11182	genome.wustl.edu	37	9	136338628	136338628	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017585.3	-1	validated	p.S377	0.000	21	0%	42	16.7%	9	22.2%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
TMEM8C	389827	genome.wustl.edu	37	9	136389833	136389833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080483.2	-1	validated	p.A45V	1.000	40	0%	67	26.9%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
ADAMTSL2	9719	genome.wustl.edu	37	9	136405847	136405847	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145320.1	+1	reviewed	p.C180	1.000	38	0%	82	29.3%	2	0%	-	-	-	NULL
VAV2	7410	genome.wustl.edu	37	9	136662835	136662835	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134398.1	-1	reviewed	p.V311	0.612	89	0%	148	34.5%	19	42.1%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
BRD3	8019	genome.wustl.edu	37	9	136899921	136899921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007371.3	-1	reviewed	p.S656L	0.999	117	0%	199	33.7%	30	23.3%	benign(0.119)	deleterious(0)	neutral(0.454)	NULL
COL5A1	1289	genome.wustl.edu	37	9	137716562	137716562	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000371820	+1	known	p.G25R	0.155	27	0%	48	14.6%	36	16.6%	-	-	-	NULL
LCN1	3933	genome.wustl.edu	37	9	138415781	138415781	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002297.2	+1	reviewed	p.I116	0.000	31	0%	76	43.4%	0	-	-	-	-	HMMPfam_Lipocalin,superfamily_Calycin
GLT6D1	360203	genome.wustl.edu	37	9	138516385	138516385	+	Missense_Mutation	SNP	C	C	T	rs138281407	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182974.2	-1	provisional	p.R130Q	0.000	27	0%	47	36.2%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_Glyco_transf_6,superfamily_SSF53448
GLT6D1	360203	genome.wustl.edu	37	9	138516451	138516451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182974.2	-1	provisional	p.R108Q	0.000	15	0%	19	36.8%	0	-	probably_damaging(0.97)	tolerated(0.08)	deleterious(0.712)	HMMPfam_Glyco_transf_6,superfamily_SSF53448
SOHLH1	402381	genome.wustl.edu	37	9	138590872	138590872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101677.1	-1	validated	p.R56W	0.005	17	0%	45	15.6%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain
CAMSAP1	157922	genome.wustl.edu	37	9	138703317	138703317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015447.3	-1	validated	p.K1549N	1.000	300	0%	411	33.3%	27	55.5%	benign(0.32)	tolerated(0.29)	neutral(0.129)	superfamily_PRC-barrel domain,HMMPfam_DUF1781
GPSM1	26086	genome.wustl.edu	37	9	139232363	139232363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145638.1	+1	validated	p.L255M	1.000	29	0%	83	28.9%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like
SEC16A	9919	genome.wustl.edu	37	9	139347909	139347909	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014866.1	-1	validated	p.E2044*	0.552	64	0%	132	24.2%	19	0%	-	-	-	NULL
FAM69B	138311	genome.wustl.edu	37	9	139617773	139617773	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152421.3	+1	validated	p.F281	0.866	30	0%	50	16%	64	51.5%	-	-	-	NULL
KIAA1984	84960	genome.wustl.edu	37	9	139701214	139701214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039374.4	+1	validated	p.E428D	0.944	22	0%	51	35.3%	0	-	possibly_damaging(0.918)	tolerated(0.68)	neutral(0.370)	NULL
TRAF2	7186	genome.wustl.edu	37	9	139820243	139820243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021138.3	+1	reviewed	p.A466T	1.000	57	0%	92	30.4%	43	37.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
FBXW5	54461	genome.wustl.edu	37	9	139836698	139836698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018998.2	-1	reviewed	p.K299R	0.930	47	0%	54	31.5%	150	38.6%	benign(0.282)	tolerated(0.41)	neutral(0.101)	superfamily_WD40 repeat-like
UAP1L1	91373	genome.wustl.edu	37	9	139974564	139974564	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207309.2	+1	validated	p.K383T	1.000	402	0%	660	31.8%	26	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases
PNPLA7	375775	genome.wustl.edu	37	9	140396180	140396180	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098537.1	-1	validated	e15-1	1.000	40	0%	68	32.4%	0	-	-	-	-	-
PNPLA7	375775	genome.wustl.edu	37	9	140437914	140437914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098537.1	-1	validated	p.S159L	0.989	61	0%	82	24.4%	1	0%	possibly_damaging(0.559)	tolerated(0.12)	neutral(0.451)	NULL
MRPL41	64975	genome.wustl.edu	37	9	140446740	140446740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032477.2	+1	reviewed	p.K69N	0.995	30	0%	64	20.3%	363	38.5%	benign(0.251)	tolerated(0.16)	neutral(0.085)	HMMPfam_MRP-L27
CACNA1B	774	genome.wustl.edu	37	9	140952624	140952624	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000718.2	+1	validated	p.I1410	1.000	407	0%	448	32.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1B	774	genome.wustl.edu	37	9	140952693	140952693	+	Missense_Mutation	SNP	G	G	T	rs187746060	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000718.2	+1	validated	p.E1433D	1.000	209	0%	217	29%	3	66.6%	possibly_damaging(0.895)	tolerated(0.46)	neutral(0.365)	NULL
ZMYND11	10771	genome.wustl.edu	37	10	288059	288059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006624.4	+1	reviewed	p.F270L	1.000	169	0%	124	27.4%	56	35.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PWWP,HMMSmart_PWWP,superfamily_SSF63748
DIP2C	22982	genome.wustl.edu	37	10	334311	334311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014974.2	-1	reviewed	p.S1346L	1.000	157	0%	204	30.9%	10	0%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	HMMPfam_AMP-binding,superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	465122	465122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014974.2	-1	reviewed	p.P208T	1.000	111	0%	206	31.6%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LARP4B	23185	genome.wustl.edu	37	10	875510	875510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015155.1	-1	provisional	p.A314T	1.000	96	0%	91	30.8%	23	21.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
WDR37	22884	genome.wustl.edu	37	10	1123904	1123904	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014023.3	+1	reviewed	p.E66*	1.000	135	0%	190	27.4%	3	0%	-	-	-	NULL
PITRM1	10531	genome.wustl.edu	37	10	3181153	3181153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014889.2	-1	validated	p.E954K	1.000	125	0%	185	66.5%	187	95.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
KLF6	1316	genome.wustl.edu	37	10	3822370	3822370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001300.5	-1	reviewed	p.R243K	1.000	123	0%	227	23.8%	24	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AKR1C2	1646	genome.wustl.edu	37	10	5038000	5038000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001354.4	-1	reviewed	p.D210Y	0.991	169	0%	112	33%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
AKR1CL1	340811	genome.wustl.edu	37	10	5204879	5204879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000380510	-1	known	p.Q66H	0.984	138	0%	85	21.2%	0	-	possibly_damaging(0.626)	deleterious(0.02)	deleterious(0.601)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
FAM208B	54906	genome.wustl.edu	37	10	5772888	5772888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017782.4	+1	validated	p.F309S	0.970	165	0%	73	35.6%	3	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
FAM208B	54906	genome.wustl.edu	37	10	5789715	5789715	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017782.4	+1	validated	p.E1444A	0.000	59	0%	62	22.6%	15	40%	benign(0.007)	tolerated(1)	-	NULL
FAM208B	54906	genome.wustl.edu	37	10	5790031	5790031	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017782.4	+1	validated	p.G1549	0.800	80	0%	81	27.2%	9	44.4%	-	-	-	NULL
FAM208B	54906	genome.wustl.edu	37	10	5791635	5791635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017782.4	+1	validated	p.R2084I	0.001	45	0%	55	34.5%	17	58.8%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
ANKRD16	54522	genome.wustl.edu	37	10	5929946	5929946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009941.2	-1	validated	p.K133N	1.000	132	0%	232	30.6%	14	64.2%	benign(0.311)	deleterious(0.03)	neutral(0.462)	HMMPfam_Ank,superfamily_ANK
ITIH5	80760	genome.wustl.edu	37	10	7618930	7618930	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030569.5	-1	validated	p.I488	0.002	71	0%	136	29.4%	53	39.6%	-	-	-	NULL
ITIH2	3698	genome.wustl.edu	37	10	7745475	7745475	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002216.2	+1	validated	p.L26	0.016	199	0%	121	29.8%	0	-	-	-	-	NULL
TAF3	83860	genome.wustl.edu	37	10	7866478	7866478	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031923.2	+1	provisional	p.E122*	1.000	225	0%	284	30.6%	2	50%	-	-	-	NULL
UPF2	26019	genome.wustl.edu	37	10	12077195	12077195	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015542.2	-1	reviewed	p.D76	0.988	587	0.2%	503	28.2%	5	20%	-	-	-	NULL
SEC61A2	55176	genome.wustl.edu	37	10	12191667	12191667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018144.3	+1	reviewed	p.K98N	1.000	157	0%	125	28.8%	13	38.4%	benign(0.038)	tolerated(0.09)	neutral(0.298)	HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit
CDC123	8872	genome.wustl.edu	37	10	12291719	12291719	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006023.2	+1	validated	e12+2	1.000	91	0%	97	28.9%	9	100%	-	-	-	-
OPTN	10133	genome.wustl.edu	37	10	13160939	13160939	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000424614	+1	known	p.S42L	0.405	93	0%	88	25%	100	39%	-	-	-	NULL
PHYH	5264	genome.wustl.edu	37	10	13325814	13325814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006214.3	-1	reviewed	p.G235V	1.000	147	0%	121	33.1%	86	34.8%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_PhyH
FRMD4A	55691	genome.wustl.edu	37	10	13702480	13702480	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018027.3	-1	validated	p.S578	0.762	126	0%	246	31.3%	31	32.2%	-	-	-	NULL
MEIG1	644890	genome.wustl.edu	37	10	15008591	15008591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080836.2	+1	validated	p.K42E	1.000	69	0%	65	46.2%	0	-	benign(0.167)	tolerated(0.13)	neutral(0.268)	NULL
OLAH	55301	genome.wustl.edu	37	10	15115162	15115162	+	Silent	SNP	G	G	A	rs35647166	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018324.2	+1	validated	p.A297	0.001	151	0%	114	29.8%	0	-	-	-	-	HMMPfam_Thioesterase,superfamily_SSF53474
ACBD7	414149	genome.wustl.edu	37	10	15120583	15120583	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039844.2	-1	validated	p.A71	1.000	225	0%	191	28.8%	3	66.6%	-	-	-	HMMPfam_ACBP,superfamily_Acyl-CoA binding protein
ITGA8	8516	genome.wustl.edu	37	10	15614358	15614358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003638.1	-1	provisional	p.I830N	0.989	68	0%	41	26.8%	0	-	possibly_damaging(0.843)	tolerated(0.57)	neutral(0.329)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGA8	8516	genome.wustl.edu	37	10	15655758	15655758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003638.1	-1	provisional	p.P485Q	0.995	131	0%	56	33.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGA8	8516	genome.wustl.edu	37	10	15760842	15760842	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003638.1	-1	provisional	p.E89A	1.000	63	0%	78	30.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_Int_alpha,superfamily_SSF69318
FAM188A	80013	genome.wustl.edu	37	10	15820996	15820996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024948.2	-1	validated	p.N445H	1.000	128	0%	49	28.6%	19	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM188A	80013	genome.wustl.edu	37	10	15821132	15821132	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024948.2	-1	validated	p.Y399	0.990	150	0%	54	40.7%	17	52.9%	-	-	-	NULL
FAM188A	80013	genome.wustl.edu	37	10	15838119	15838119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024948.2	-1	validated	p.F312C	1.000	91	0%	32	43.8%	14	42.8%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_EF-hand
FAM188A	80013	genome.wustl.edu	37	10	15885240	15885240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024948.2	-1	validated	p.S69L	1.000	80	0%	55	36.4%	11	45.4%	benign(0.001)	tolerated(0.73)	neutral(0.002)	NULL
MRC1	4360	genome.wustl.edu	37	10	17898270	17898270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009567.1	+1	reviewed	p.R476W	0.059	79	0%	48	25%	1	0%	possibly_damaging(0.852)	deleterious(0.04)	deleterious(0.676)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
SLC39A12	221074	genome.wustl.edu	37	10	18250731	18250731	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145195.1	+1	validated	p.Q161	0.994	74	0%	41	19.5%	0	-	-	-	-	NULL
CACNB2	783	genome.wustl.edu	37	10	18787377	18787377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201596.2	+1	reviewed	p.E143K	1.000	144	0%	78	33.3%	0	-	benign(0.183)	tolerated(0.07)	neutral(0.336)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
NSUN6	221078	genome.wustl.edu	37	10	18931457	18931457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182543.2	-1	validated	p.L87I	1.000	124	0%	120	23.3%	7	14.2%	benign(0.025)	tolerated(0.2)	neutral(0.050)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PLXDC2	84898	genome.wustl.edu	37	10	20508022	20508022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032812.7	+1	provisional	p.D435Y	1.000	171	0%	88	28.4%	10	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
NEBL	10529	genome.wustl.edu	37	10	21074700	21074700	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006393.2	-1	reviewed	p.A1007	0.075	67	0%	28	32.1%	1	0%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
NEBL	10529	genome.wustl.edu	37	10	21115388	21115388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006393.2	-1	reviewed	p.Q619H	1.000	245	0%	76	23.7%	0	-	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMPfam_Nebulin,HMMSmart_SM00227
NEBL	10529	genome.wustl.edu	37	10	21147262	21147262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006393.2	-1	reviewed	p.K270N	1.000	249	0%	130	32.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00227
NEBL	10529	genome.wustl.edu	37	10	21186104	21186104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006393.2	-1	reviewed	p.D11Y	0.983	388	0%	224	27.2%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
RNU6-15	100302741	genome.wustl.edu	37	10	21610895	21610895	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384534	+1	known	NULL	0.188	46	0%	122	38.5%	0	-	-	-	-	-
SPAG6	9576	genome.wustl.edu	37	10	22676871	22676871	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012443.2	+1	reviewed	p.Y266	0.619	141	0%	69	30.4%	0	-	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PIP4K2A	5305	genome.wustl.edu	37	10	22826151	22826151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005028.4	-1	reviewed	p.F400L	1.000	171	0%	120	50.8%	64	35.9%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
ARMC3	219681	genome.wustl.edu	37	10	23297787	23297787	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173081.3	+1	validated	p.E658*	1.000	112	0%	92	21.7%	0	-	-	-	-	NULL
C10orf67	256815	genome.wustl.edu	37	10	23622110	23622110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153714.2	-1	validated	p.L71I	0.001	162	0%	142	36.6%	0	-	benign(0.168)	tolerated(0.07)	neutral(0.334)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24783450	24783450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019590.3	+1	validated	p.E567D	1.000	108	0%	75	22.7%	15	53.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24831959	24831959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019590.3	+1	validated	p.D1254Y	0.979	30	0%	18	33.3%	23	56.5%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832230	24832230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019590.3	+1	validated	p.D1344G	0.003	81	0%	58	31%	50	54%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24908426	24908426	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020824.3	-1	validated	p.S800A	1.000	62	0%	27	25.9%	23	52.1%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
THNSL1	79896	genome.wustl.edu	37	10	25313489	25313489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024838.4	+1	validated	p.R446I	0.980	191	0%	147	28.6%	4	100%	possibly_damaging(0.724)	deleterious(0.02)	deleterious(0.646)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
GPR158	57512	genome.wustl.edu	37	10	25861728	25861728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020752.2	+1	validated	p.Q555H	0.524	269	0%	122	27%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25886793	25886793	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020752.2	+1	validated	p.S746	0.009	71	0%	44	31.8%	0	-	-	-	-	NULL
GPR158	57512	genome.wustl.edu	37	10	25887999	25887999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020752.2	+1	validated	p.E1148D	0.822	91	0%	34	26.5%	0	-	benign(0.005)	tolerated(0.61)	neutral(0.004)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26310573	26310573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017433.4	+1	reviewed	p.P243S	1.000	87	0%	35	11.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MYO3A	53904	genome.wustl.edu	37	10	26357705	26357705	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017433.4	+1	reviewed	p.V354	0.734	128	0%	88	43.2%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26436382	26436382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017433.4	+1	reviewed	p.F843L	1.000	135	0%	57	40.4%	0	-	possibly_damaging(0.887)	tolerated(0.09)	deleterious(0.643)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
GAD2	2572	genome.wustl.edu	37	10	26505776	26505776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000818.2	+1	reviewed	p.S13L	1.000	81	0%	110	12.7%	0	-	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
GAD2	2572	genome.wustl.edu	37	10	26512880	26512880	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000818.2	+1	reviewed	p.W195*	1.000	212	0%	296	33.8%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
GAD2	2572	genome.wustl.edu	37	10	26534913	26534913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000818.2	+1	reviewed	p.I302L	1.000	195	0%	104	37.5%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
GAD2	2572	genome.wustl.edu	37	10	26559586	26559586	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000818.2	+1	reviewed	p.L331	0.996	160	0%	89	27%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
ANKRD26	22852	genome.wustl.edu	37	10	27324307	27324307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014915.2	-1	validated	p.E1024D	1.000	267	0%	165	24.8%	5	60%	benign(0.066)	tolerated(0.3)	neutral(0.033)	NULL
YME1L1	10730	genome.wustl.edu	37	10	27437870	27437870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139312.1	-1	reviewed	p.D45Y	0.996	120	0%	167	36.5%	60	36.6%	benign(0.273)	tolerated(0.2)	neutral(0.078)	NULL
MASTL	84930	genome.wustl.edu	37	10	27459497	27459497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032844.3	+1	reviewed	p.D537N	0.999	93	0%	66	36.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
MASTL	84930	genome.wustl.edu	37	10	27469990	27469990	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032844.3	+1	reviewed	p.K791I	1.000	135	0%	82	43.9%	8	37.5%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	superfamily_Kinase_like,HMMPfam_Pkinase
MASTL	84930	genome.wustl.edu	37	10	27470465	27470465	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032844.3	+1	reviewed	p.E812*	1.000	120	0%	97	27.8%	13	7.6%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
ACBD5	91452	genome.wustl.edu	37	10	27524067	27524067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145698.3	-1	validated	p.K86Q	1.000	125	0%	166	36.1%	12	41.6%	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMPfam_ACBP,superfamily_ACBP
ARMC4	55130	genome.wustl.edu	37	10	28196681	28196681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018076.2	-1	validated	p.R841C	1.000	111	0%	52	32.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC4	55130	genome.wustl.edu	37	10	28274091	28274091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018076.2	-1	validated	p.M144I	0.002	130	0%	66	37.9%	0	-	benign(0)	tolerated(1)	-	NULL
MPP7	143098	genome.wustl.edu	37	10	28348653	28348653	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173496.3	-1	validated	p.R408	1.000	181	0%	92	22.8%	9	22.2%	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540
WAC	51322	genome.wustl.edu	37	10	28903595	28903595	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016628.3	+1	reviewed	p.R513*	0.997	69	0%	91	36.3%	110	15.4%	-	-	-	NULL
MTPAP	55149	genome.wustl.edu	37	10	30654207	30654207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000358107	-1	known	p.R19I	0.025	23	0%	24	29.2%	0	-	unknown(0)	-	-	NULL
LOC645954	645954	genome.wustl.edu	37	10	30960510	30960510	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_017086.3	+1	model	NULL	1.000	51	0%	38	34.2%	0	-	-	-	-	-
ZEB1	6935	genome.wustl.edu	37	10	31809553	31809553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030751.5	+1	reviewed	p.E430D	1.000	73	0%	26	26.9%	4	0%	probably_damaging(0.984)	tolerated(0.83)	neutral(0.431)	NULL
ARHGAP12	94134	genome.wustl.edu	37	10	32106754	32106754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018287.5	-1	provisional	p.D565Y	1.000	150	0%	87	35.6%	7	57.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIF5B	3799	genome.wustl.edu	37	10	32306176	32306176	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004521.2	-1	validated	p.E886*	1.000	223	0%	212	34.9%	43	9.3%	-	-	-	NULL
KIF5B	3799	genome.wustl.edu	37	10	32322806	32322806	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004521.2	-1	validated	p.E424	1.000	264	0%	205	35.1%	26	73%	-	-	-	NULL
KIF5B	3799	genome.wustl.edu	37	10	32329368	32329368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004521.2	-1	validated	p.N78H	1.000	234	0%	175	34.9%	29	24.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
EPC1	80314	genome.wustl.edu	37	10	32581568	32581568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025209.2	-1	provisional	p.R224H	1.000	158	0%	109	31.2%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC7	221016	genome.wustl.edu	37	10	32740748	32740748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001026383.1	+1	validated	p.E60*	1.000	87	0%	120	35%	3	0%	-	-	-	NULL
CCDC7	221016	genome.wustl.edu	37	10	32807394	32807394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001026383.1	+1	validated	p.L318F	0.001	184	0%	193	11.9%	0	-	possibly_damaging(0.922)	deleterious(0.04)	deleterious(0.720)	NULL
C10orf68	79741	genome.wustl.edu	37	10	33017848	33017848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024688.2	+1	validated	p.S208Y	0.001	140	0%	50	42%	1	0%	benign(0.075)	tolerated(0.2)	neutral(0.054)	NULL
ITGB1	3688	genome.wustl.edu	37	10	33218762	33218762	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033667.2	-1	reviewed	p.R122*	0.237	293	0%	133	24.1%	83	6%	-	-	-	HMMPfam_Integrin_beta,HMMSmart_INB
CUL2	8453	genome.wustl.edu	37	10	35320284	35320284	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003591.2	-1	provisional	p.I444F	1.000	178	0%	142	29.6%	28	32.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
CREM	1390	genome.wustl.edu	37	10	35500237	35500237	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183011.1	+1	reviewed	p.N271H	1.000	105	0%	187	34.2%	32	37.5%	benign(0.216)	deleterious(0)	neutral(0.466)	HMMSmart_SM00338,HMMPfam_bZIP_1
GJD4	219770	genome.wustl.edu	37	10	35897020	35897020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153368.2	+1	validated	p.E193D	1.000	6	0.000	16	0.312	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Connexin_CCC
ANKRD30A	91074	genome.wustl.edu	37	10	37440996	37440996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052997.2	+1	validated	p.F496L	0.006	407	0%	219	32.9%	0	-	benign(0.053)	tolerated(0.13)	neutral(0.256)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37442578	37442578	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052997.2	+1	validated	p.G540*	0.004	145	0%	67	16.4%	0	-	-	-	-	NULL
LOC646360	646360	genome.wustl.edu	37	10	37626786	37626786	+	RNA	SNP	G	G	A	rs144068387	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_078419.1	+1	model	NULL	1.000	135	0.7%	93	26.9%	0	-	-	-	-	-
ZNF248	57209	genome.wustl.edu	37	10	38120816	38120816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021045.1	-1	provisional	p.E489D	1.000	257	0%	170	23.5%	13	38.4%	possibly_damaging(0.918)	tolerated(0.18)	neutral(0.424)	superfamily_C2H2 and C2HC zinc fingers
LOC340947	340947	genome.wustl.edu	37	10	38369419	38369419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001131609.2	-1	model	p.F172L	1.000	50	0%	56	41.1%	1	0%	-	-	-	HMMPfam_Paf67
ZNF37A	7587	genome.wustl.edu	37	10	38407732	38407732	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007094.2	+1	validated	p.I551	0.005	97	0%	39	28.2%	3	66.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
BMS1	9790	genome.wustl.edu	37	10	43288475	43288475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014753.3	+1	reviewed	p.K324N	1.000	110	0%	79	30.4%	23	8.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BMS1	9790	genome.wustl.edu	37	10	43315744	43315744	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014753.3	+1	reviewed	p.R881*	1.000	222	0%	247	25.9%	23	8.6%	-	-	-	HMMPfam_DUF663
RET	5979	genome.wustl.edu	37	10	43597794	43597794	+	Silent	SNP	C	C	T	rs143083395	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020975.4	+1	reviewed	p.R114	0.114	71	0%	115	37.4%	1	100%	-	-	-	NULL
RET	5979	genome.wustl.edu	37	10	43615088	43615088	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020975.4	+1	reviewed	p.N834	1.000	17	0%	41	36.6%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
RET	5979	genome.wustl.edu	37	10	43615593	43615593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020975.4	+1	reviewed	p.S891L	1.000	98	0%	170	36.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
CSGALNACT2	55454	genome.wustl.edu	37	10	43650711	43650711	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018590.3	+1	provisional	p.T38	0.998	174	0.6%	169	26%	5	40%	-	-	-	HMMPfam_CHGN
CXCL12	6387	genome.wustl.edu	37	10	44876228	44876228	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033886.2	-1	reviewed	p.N54	1.000	187	0%	269	32%	15	0%	-	-	-	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
RASSF4	83937	genome.wustl.edu	37	10	45487428	45487428	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032023.3	+1	reviewed	p.E295*	1.000	182	0%	214	33.2%	15	0%	-	-	-	NULL
ALOX5	240	genome.wustl.edu	37	10	45877990	45877990	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000698.2	+1	reviewed	p.I70	0.955	76	0%	96	33.3%	19	0%	-	-	-	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
ALOX5	240	genome.wustl.edu	37	10	45919567	45919567	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000698.2	+1	reviewed	p.I211	1.000	137	0%	228	10.5%	17	0%	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ALOX5	240	genome.wustl.edu	37	10	45936008	45936008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000698.2	+1	reviewed	p.R371Q	1.000	75	0%	115	27.8%	26	0%	possibly_damaging(0.861)	tolerated(0.48)	neutral(0.344)	HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxygenase
ZFAND4	93550	genome.wustl.edu	37	10	46113652	46113652	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128324.1	-1	validated	p.K662Q	1.000	113	0%	79	38%	3	33.3%	benign(0.364)	deleterious(0.01)	deleterious(0.522)	NULL
ZFAND4	93550	genome.wustl.edu	37	10	46143858	46143858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128324.1	-1	validated	p.L151F	0.998	98	0%	53	13.2%	3	0%	possibly_damaging(0.612)	deleterious(0)	deleterious(0.656)	NULL
PPYR1	5540	genome.wustl.edu	37	10	47087704	47087704	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005972.4	+1	validated	p.C307	1.000	212	0%	289	17.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RBP3	5949	genome.wustl.edu	37	10	48382178	48382178	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002900.2	-1	reviewed	p.I1157	1.000	46	0%	59	28.8%	0	-	-	-	-	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
FRMPD2	143162	genome.wustl.edu	37	10	49420012	49420012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001018071.3	-1	reviewed	p.E532D	0.999	82	0%	41	26.8%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
WDFY4	57705	genome.wustl.edu	37	10	50011369	50011369	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000312002	+1	known	p.L574I	1.000	136	0%	113	34.5%	3	0%	-	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	50013401	50013401	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000312002	+1	known	p.L618F	0.997	89	0%	55	32.7%	4	0%	-	-	-	NULL
LRRC18	474354	genome.wustl.edu	37	10	50121505	50121505	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006939.3	-1	validated	p.P232	0.000	224	0%	159	34.6%	0	-	-	-	-	NULL
WDFY4	57705	genome.wustl.edu	37	10	50154114	50154114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020945.1	+1	validated	p.F2593L	1.000	99	0%	55	25.5%	4	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Beach,superfamily_BEACH domain
WDFY4	57705	genome.wustl.edu	37	10	50190553	50190553	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020945.1	+1	validated	e61-1	1.000	38	0%	31	19.4%	0	-	-	-	-	-
C10orf71	118461	genome.wustl.edu	37	10	50532260	50532260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135196.1	+1	validated	p.S557Y	0.000	48	0%	46	26.1%	0	-	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	NULL
CHAT	1103	genome.wustl.edu	37	10	50824587	50824587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020549.4	+1	reviewed	p.T109M	0.991	96	0%	114	29.8%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
CHAT	1103	genome.wustl.edu	37	10	50856607	50856607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020549.4	+1	reviewed	p.D446N	1.000	33	0%	45	31.1%	0	-	possibly_damaging(0.555)	deleterious(0)	deleterious(0.634)	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases
PARG	8505	genome.wustl.edu	37	10	51040912	51040912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003631.2	-1	reviewed	p.L862I	1.000	124	0%	58	25.9%	15	33.3%	probably_damaging(0.998)	tolerated(0.2)	deleterious(0.523)	HMMPfam_PARG_cat
PARG	8505	genome.wustl.edu	37	10	51087793	51087793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003631.2	-1	reviewed	p.F638L	1.000	186	0%	78	35.9%	13	46.1%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_PARG_cat
AGAP7	653268	genome.wustl.edu	37	10	51465619	51465619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077685.1	-1	provisional	p.K279N	1.000	31	0%	31	48.4%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
AGAP6	414189	genome.wustl.edu	37	10	51769233	51769233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077665.2	+1	validated	p.E450K	1.000	48	0%	51	27.5%	7	14.2%	benign(0.004)	tolerated(0.21)	neutral(0.044)	superfamily_PH domain-like
FAM21A	387680	genome.wustl.edu	37	10	51889673	51889673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005751.1	+1	validated	p.K1194N	0.998	249	0%	172	26.7%	17	29.4%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
SGMS1	259230	genome.wustl.edu	37	10	52067837	52067837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_147156.3	-1	reviewed	p.L323I	1.000	52	0%	30	36.7%	21	47.6%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
LOC100288158	100288158	genome.wustl.edu	37	10	54074156	54074156	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002342990.1	-1	model	p.*136W	0.001	19	0%	34	29.4%	0	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55566569	55566569	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142771.1	-1	reviewed	p.N1607H	1.000	219	0%	75	18.7%	2	50%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55568543	55568543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142769.1	-1	reviewed	p.G1761D	0.975	232	0%	244	32.4%	0	-	unknown(0)	deleterious(0)	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55582525	55582525	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142763.1	-1	reviewed	p.K1661T	0.000	175	0%	212	28.8%	0	-	benign(0.103)	deleterious(0.01)	neutral(0.414)	NULL
FAM13C	220965	genome.wustl.edu	37	10	61011369	61011369	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143773.1	-1	validated	p.E451*	1.000	211	0%	113	26.5%	2	50%	-	-	-	NULL
CCDC6	8030	genome.wustl.edu	37	10	61612436	61612436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005436.3	-1	validated	p.E110*	1.000	221	0%	83	30.1%	12	16.6%	-	-	-	HMMPfam_DUF2046
ANK3	288	genome.wustl.edu	37	10	61830185	61830185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020987.2	-1	reviewed	p.S3485Y	0.027	107	0%	34	20.6%	0	-	possibly_damaging(0.909)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61830576	61830576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020987.2	-1	reviewed	p.S3355P	0.007	290	0%	154	16.9%	0	-	benign(0.004)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61830794	61830794	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020987.2	-1	reviewed	p.I3282S	0.944	137	0%	71	26.8%	0	-	benign(0.018)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61833320	61833320	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020987.2	-1	reviewed	p.L2440R	1.000	113	0%	34	35.3%	0	-	probably_damaging(0.991)	-	-	NULL
CDK1	983	genome.wustl.edu	37	10	62551966	62551966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001786.4	+1	reviewed	p.K238N	1.000	141	0%	59	39%	75	33.3%	possibly_damaging(0.939)	tolerated(0.15)	deleterious(0.625)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RHOBTB1	9886	genome.wustl.edu	37	10	62648592	62648592	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014836.4	-1	reviewed	p.I278	1.000	165	0%	70	27.1%	11	54.5%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
C10orf107	219621	genome.wustl.edu	37	10	63441032	63441032	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173554.2	+1	validated	p.F11C	1.000	213	0%	91	31.9%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63852614	63852614	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032199.2	+1	validated	p.F1131C	1.000	115	0%	76	34.2%	19	15.7%	possibly_damaging(0.716)	deleterious(0)	deleterious(0.704)	NULL
RTKN2	219790	genome.wustl.edu	37	10	64022544	64022544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145307.2	-1	provisional	p.R33*	1.000	133	0%	149	30.2%	4	25%	-	-	-	HMMSmart_SM00742
ZNF365	22891	genome.wustl.edu	37	10	64136496	64136496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199451.2	+1	reviewed	p.K182E	0.999	44	0%	72	31.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64952874	64952874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032776.1	-1	validated	p.S1967Y	1.000	181	0%	78	32.1%	11	63.6%	benign(0.257)	deleterious(0)	deleterious(0.471)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64960409	64960409	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032776.1	-1	validated	p.D1701E	0.908	103	0%	65	32.3%	6	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CTNNA3	29119	genome.wustl.edu	37	10	68280387	68280387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127384.1	-1	validated	p.L507I	1.000	136	0%	51	21.6%	0	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
LRRTM3	347731	genome.wustl.edu	37	10	68687077	68687077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178011.3	+1	validated	p.L135V	1.000	57	0%	34	35.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
CTNNA3	29119	genome.wustl.edu	37	10	69366751	69366751	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127384.1	-1	validated	p.S52	0.242	264	0%	139	36%	0	-	-	-	-	HMMPfam_Vinculin
HERC4	26091	genome.wustl.edu	37	10	69748511	69748511	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022079.2	-1	validated	p.K572T	1.000	65	0%	39	43.6%	8	37.5%	benign(0.002)	tolerated(0.35)	neutral(0.021)	NULL
HERC4	26091	genome.wustl.edu	37	10	69832808	69832808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022079.2	-1	validated	p.E20*	1.000	139	0%	236	31.4%	11	27.2%	-	-	-	superfamily_RCC1/BLIP-II
MYPN	84665	genome.wustl.edu	37	10	69881862	69881862	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032578.2	+1	validated	p.E223*	1.000	51	0%	31	35.5%	0	-	-	-	-	NULL
ENSG00000222371	0	genome.wustl.edu	37	10	69918084	69918084	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000410439	+1	novel	NULL	0.004	51	0%	13	46.2%	0	-	-	-	-	-
MYPN	84665	genome.wustl.edu	37	10	69954157	69954157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032578.2	+1	validated	p.R988I	1.000	97	0%	61	29.5%	0	-	possibly_damaging(0.805)	tolerated(0.08)	deleterious(0.603)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HNRNPH3	3189	genome.wustl.edu	37	10	70098418	70098418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012207.2	+1	reviewed	p.R137Q	1.000	268	0%	305	34.1%	196	40.8%	possibly_damaging(0.763)	tolerated(0.07)	deleterious(0.602)	NULL
RUFY2	55680	genome.wustl.edu	37	10	70161440	70161440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017987.4	-1	validated	p.V113A	1.000	196	0%	255	35.3%	5	40%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	HMMPfam_RUN
DNA2	1763	genome.wustl.edu	37	10	70190402	70190402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080449.1	-1	provisional	p.A753T	1.000	113	0%	83	19.3%	10	30%	benign(0.015)	tolerated(0.06)	neutral(0.323)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TET1	80312	genome.wustl.edu	37	10	70333858	70333858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030625.2	+1	validated	p.R588I	1.000	50	0%	59	35.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CXXC
TET1	80312	genome.wustl.edu	37	10	70405958	70405958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030625.2	+1	validated	p.R1158W	0.012	133	0%	115	35.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TET1	80312	genome.wustl.edu	37	10	70450630	70450630	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030625.2	+1	validated	p.S1824R	0.349	82	0%	81	29.6%	5	20%	benign(0.016)	deleterious(0.01)	neutral(0.406)	NULL
DDX21	9188	genome.wustl.edu	37	10	70719647	70719647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004728.2	+1	reviewed	p.V58G	0.547	57	0%	76	31.6%	7	0%	benign(0.077)	tolerated(0.09)	neutral(0.302)	NULL
DDX21	9188	genome.wustl.edu	37	10	70719812	70719812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004728.2	+1	reviewed	p.K113T	0.951	76	0%	75	29.3%	3	100%	possibly_damaging(0.671)	tolerated(0.14)	deleterious(0.487)	NULL
HK1	3098	genome.wustl.edu	37	10	71124653	71124653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033497.2	+1	reviewed	p.D168Y	1.000	157	0%	180	35%	49	36.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Hexokinase_1,PatternScan_HEXOKINASES,superfamily_SSF53067
PRF1	5551	genome.wustl.edu	37	10	72358324	72358324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083116.1	-1	reviewed	p.R385W	0.039	23	0%	18	38.9%	26	0%	possibly_damaging(0.847)	tolerated(0.18)	neutral(0.381)	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72496501	72496501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139155.2	+1	reviewed	p.K520N	1.000	85	0%	98	33.7%	2	100%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
ADAMTS14	140766	genome.wustl.edu	37	10	72509660	72509660	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139155.2	+1	reviewed	p.G785	1.000	35	0%	50	36%	0	-	-	-	-	HMMPfam_ADAM_spacer1
ADAMTS14	140766	genome.wustl.edu	37	10	72518042	72518042	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139155.2	+1	reviewed	e21+1	1.000	81	0%	81	27.2%	0	-	-	-	-	-
ADAMTS14	140766	genome.wustl.edu	37	10	72520513	72520513	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139155.2	+1	reviewed	p.T1195	0.007	56	0%	82	35.4%	2	50%	-	-	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73326604	73326604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022124.5	+1	reviewed	p.A179T	0.560	45	0%	39	25.6%	2	0%	benign(0.002)	tolerated(0.47)	neutral(0.011)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73461850	73461850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022124.5	+1	reviewed	p.F823L	1.000	58	0%	105	28.6%	7	57.1%	possibly_damaging(0.889)	tolerated(0.4)	neutral(0.365)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73491805	73491805	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022124.5	+1	reviewed	p.D1259	0.633	63	0%	99	33.3%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73558166	73558166	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022124.5	+1	reviewed	p.P2295	1.000	47	0%	73	31.5%	0	-	-	-	-	superfamily_Cadherin-like
OIT3	170392	genome.wustl.edu	37	10	74684367	74684367	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152635.1	+1	provisional	p.I444	0.818	39	0%	33	33.3%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_SM00241
ECD	11319	genome.wustl.edu	37	10	74896465	74896465	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135752.1	-1	validated	p.Q600H	0.872	134	0%	100	36%	61	36%	benign(0.021)	tolerated(0.13)	neutral(0.254)	HMMPfam_SGT1
ECD	11319	genome.wustl.edu	37	10	74923639	74923639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135752.1	-1	validated	p.F19L	0.999	160	1.3%	216	37.5%	14	50%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_SGT1
FAM149B1	317662	genome.wustl.edu	37	10	74990256	74990256	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000372955	+1	known	p.E300*	1.000	97	0%	80	32.5%	26	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTC18	118491	genome.wustl.edu	37	10	75108276	75108276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145170.3	-1	validated	p.T85N	0.993	81	0%	91	18.7%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ANXA7	310	genome.wustl.edu	37	10	75138676	75138676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004034.2	-1	reviewed	p.R446Q	0.998	56	0%	47	40.4%	141	48.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
USP54	159195	genome.wustl.edu	37	10	75294498	75294498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152586.3	-1	provisional	p.R392Q	1.000	188	0%	112	30.4%	5	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75412939	75412939	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114133.1	-1	validated	p.E244*	1.000	49	0%	122	34.4%	0	-	-	-	-	NULL
NDST2	8509	genome.wustl.edu	37	10	75568143	75568143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003635.3	-1	reviewed	p.L2I	1.000	30	0%	52	15.4%	13	15.3%	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
PLAU	5328	genome.wustl.edu	37	10	75676300	75676300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002658.3	+1	reviewed	p.E425K	0.003	44	0%	40	42.5%	37	2.7%	benign(0.016)	tolerated(0.14)	neutral(0.250)	superfamily_Trypsin-like serine proteases
AP3M1	26985	genome.wustl.edu	37	10	75898125	75898125	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012095.4	-1	reviewed	p.L5	1.000	90	0%	106	22.6%	21	61.9%	-	-	-	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
KAT6B	23522	genome.wustl.edu	37	10	76789287	76789287	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012330.2	+1	validated	p.C1569G	1.000	80	0%	54	27.8%	33	42.4%	probably_damaging(0.99)	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78944643	78944643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014797.2	-1	reviewed	p.D212Y	1.000	172	0%	90	27.8%	1	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	superfamily_Voltage-gated potassium channels
KCNMA1	3778	genome.wustl.edu	37	10	79011012	79011012	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000372403	-1	known	p.L132*	0.997	130	0%	72	27.8%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
DLG5	9231	genome.wustl.edu	37	10	79555860	79555860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004747.3	-1	reviewed	p.D1799N	1.000	65	0%	97	33%	63	41.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
POLR3A	11128	genome.wustl.edu	37	10	79769648	79769648	+	Missense_Mutation	SNP	G	G	A	rs187245012	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007055.3	-1	validated	p.R582C	1.000	94	0%	69	29%	12	66.6%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	HMMPfam_RNA_pol_Rpb1_3,superfamily_SSF64484
SFTPA2	729238	genome.wustl.edu	37	10	81317048	81317048	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098668.2	-1	reviewed	p.E222*	0.359	192	0%	116	23.3%	1	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
C10orf57	80195	genome.wustl.edu	37	10	81850610	81850610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025125.2	+1	provisional	p.F103L	0.997	196	0%	111	27%	31	38.7%	benign(0)	tolerated(1)	-	NULL
SH2D4B	387694	genome.wustl.edu	37	10	82403797	82403797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207372.2	+1	validated	p.R345Q	1.000	133	0%	53	28.3%	0	-	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
NRG3	10718	genome.wustl.edu	37	10	84498384	84498384	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010848.3	+1	reviewed	p.T335	0.563	138	0%	88	22.7%	0	-	-	-	-	superfamily_SSF57196
NRG3	10718	genome.wustl.edu	37	10	84625184	84625184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010848.3	+1	reviewed	p.E349K	1.000	214	0%	141	34%	0	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	NULL
NRG3	10718	genome.wustl.edu	37	10	84745346	84745346	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010848.3	+1	reviewed	p.S692	0.663	21	0%	14	35.7%	0	-	-	-	-	NULL
CDHR1	92211	genome.wustl.edu	37	10	85964338	85964338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033100.2	+1	reviewed	p.R280Q	0.003	79	0%	91	24.2%	1	0%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LRIT2	340745	genome.wustl.edu	37	10	85981707	85981707	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017924.2	-1	validated	p.K541T	0.000	32	0%	44	11.4%	0	-	benign(0.071)	tolerated(0.28)	neutral(0.036)	NULL
LRIT2	340745	genome.wustl.edu	37	10	85984098	85984098	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017924.2	-1	validated	p.E295*	1.000	58	0%	42	11.9%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
LRIT1	26103	genome.wustl.edu	37	10	85991885	85991885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015613.2	-1	validated	p.R557Q	0.991	61	0%	104	30.8%	0	-	benign(0.123)	tolerated(0.34)	neutral(0.033)	NULL
RGR	5995	genome.wustl.edu	37	10	86018295	86018295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002921.3	+1	reviewed	p.T263M	0.408	61	0%	39	28.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,PatternScan_OPSIN,superfamily_Family A G protein-coupled receptor-like
FAM190B	54462	genome.wustl.edu	37	10	86131944	86131944	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018999.2	+1	validated	p.Q379P	0.972	102	0%	74	37.8%	14	35.7%	possibly_damaging(0.718)	tolerated(0.12)	deleterious(0.520)	NULL
WAPAL	23063	genome.wustl.edu	37	10	88260094	88260094	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015045.2	-1	validated	p.T302	0.800	151	0%	64	34.4%	21	57.1%	-	-	-	NULL
LDB3	11155	genome.wustl.edu	37	10	88477764	88477764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007078.2	+1	reviewed	p.E574*	1.000	124	0%	170	34.1%	0	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SNCG	6623	genome.wustl.edu	37	10	88718513	88718513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003087.2	+1	reviewed	p.E20G	1.000	106	0%	142	33.1%	1	100%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_Synuclein
PAPSS2	9060	genome.wustl.edu	37	10	89505621	89505621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001015880.1	+1	reviewed	p.R585Q	0.954	78	0%	33	30.3%	1	0%	possibly_damaging(0.886)	tolerated(0.15)	deleterious(0.587)	HMMPfam_ATP-sulfurylase,superfamily_SSF52374
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000371953	+1	known	p.R130Q	1.000	161	0.6%	80	23.7%	76	34.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717619	89717619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000371953	+1	known	p.F215S	1.000	96	1%	58	32.8%	72	40.2%	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720749	89720749	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000371953	+1	known	p.I300	1.000	107	0%	49	22.4%	42	4.7%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
RNLS	55328	genome.wustl.edu	37	10	90342837	90342837	+	Missense_Mutation	SNP	C	C	A	rs2296545	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031709.2	-1	validated	p.E37D	0.815	16	0%	69	36.2%	1	0%	benign(0.004)	tolerated(0.14)	neutral(0.249)	superfamily_FAD/NAD(P)-binding domain
LIPF	8513	genome.wustl.edu	37	10	90427054	90427054	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000394375	+1	known	p.K10N	0.997	223	0%	108	30.6%	0	-	possibly_damaging(0.707)	tolerated(0.36)	neutral(0.275)	NULL
LIPN	643418	genome.wustl.edu	37	10	90534898	90534898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102469.1	+1	validated	p.D314G	0.103	118	0%	38	10.5%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
LIPM	340654	genome.wustl.edu	37	10	90575218	90575218	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128215.1	+1	validated	p.I272	0.984	193	0%	154	26%	0	-	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
ACTA2	59	genome.wustl.edu	37	10	90700995	90700995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001141945.1	-1	reviewed	p.V203I	1.000	94	0%	47	36.2%	198	3%	benign(0)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
IFIT2	3433	genome.wustl.edu	37	10	91066510	91066510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001547.4	+1	validated	p.A266V	0.520	80	0%	41	26.8%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
IFIT1B	439996	genome.wustl.edu	37	10	91144177	91144177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010987.2	+1	validated	p.M369I	0.000	59	0%	41	29.3%	0	-	benign(0.009)	tolerated(0.25)	neutral(0.037)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
IFIT1	3434	genome.wustl.edu	37	10	91162817	91162817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001548.3	+1	validated	p.R262Q	0.930	43	0%	32	50%	17	47%	benign(0.25)	tolerated(0.13)	neutral(0.278)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
IFIT1	3434	genome.wustl.edu	37	10	91162858	91162858	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001548.3	+1	validated	p.K276Q	0.000	47	0%	29	48.3%	17	47%	benign(0.103)	tolerated(0.07)	neutral(0.327)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SLC16A12	387700	genome.wustl.edu	37	10	91196037	91196037	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_213606.3	-1	validated	p.A326	0.008	97	0%	47	36.2%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC16A12	387700	genome.wustl.edu	37	10	91198650	91198650	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_213606.3	-1	validated	p.E217*	0.042	99	0%	54	37%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KIF20B	9585	genome.wustl.edu	37	10	91469201	91469201	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016195.2	+1	validated	p.K112Q	1.000	116	0%	79	26.6%	2	50%	benign(0.004)	tolerated(0.14)	neutral(0.249)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91470858	91470858	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016195.2	+1	validated	p.E211*	1.000	72	0%	57	14%	1	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91476235	91476235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016195.2	+1	validated	p.R328I	0.997	71	0%	37	35.1%	5	60%	possibly_damaging(0.586)	deleterious(0.02)	deleterious(0.585)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91488915	91488915	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016195.2	+1	validated	p.E728*	0.996	33	0%	33	27.3%	0	-	-	-	-	NULL
HECTD2	143279	genome.wustl.edu	37	10	93251014	93251014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182765.3	+1	validated	p.L417I	1.000	62	0%	53	26.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HECT
BTAF1	9044	genome.wustl.edu	37	10	93713614	93713614	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003972.2	+1	validated	p.E229*	1.000	181	0%	128	28.1%	9	22.2%	-	-	-	superfamily_ARM repeat
CPEB3	22849	genome.wustl.edu	37	10	93841238	93841238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014912.4	-1	validated	p.D570N	1.000	77	0%	55	21.8%	2	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
IDE	3416	genome.wustl.edu	37	10	94223528	94223528	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004969.3	-1	reviewed	p.Y907	0.993	221	0%	117	36.8%	16	18.7%	-	-	-	superfamily_Metalloenz_metal-bd
KIF11	3832	genome.wustl.edu	37	10	94369185	94369185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004523.3	+1	reviewed	p.N206S	1.000	118	0%	125	18.4%	11	63.6%	possibly_damaging(0.443)	deleterious(0.02)	deleterious(0.527)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
EXOC6	54536	genome.wustl.edu	37	10	94694070	94694070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019053.4	+1	reviewed	p.F341L	1.000	88	0%	55	45.5%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYP26C1	340665	genome.wustl.edu	37	10	94821197	94821197	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183374.2	+1	reviewed	p.F59	1.000	19	0%	33	36.4%	0	-	-	-	-	superfamily_Cytochrome_P450
CYP26A1	1592	genome.wustl.edu	37	10	94835035	94835035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000783.3	+1	reviewed	p.W279R	0.498	41	0%	82	23.2%	2	50%	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP26A1	1592	genome.wustl.edu	37	10	94835711	94835711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000783.3	+1	reviewed	p.K331N	0.976	80	0%	178	27.5%	0	-	benign(0.056)	tolerated(0.18)	neutral(0.060)	HMMPfam_p450,superfamily_Cytochrome_P450
MYOF	26509	genome.wustl.edu	37	10	95095750	95095750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013451.3	-1	reviewed	p.F1497L	1.000	213	0%	255	31.8%	29	51.7%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
PDE6C	5146	genome.wustl.edu	37	10	95422806	95422806	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006204.3	+1	reviewed	p.E797*	1.000	108	0%	38	31.6%	0	-	-	-	-	HMMPfam_PDEase_I,superfamily_SSF109604
FRA10AC1	118924	genome.wustl.edu	37	10	95445023	95445023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145246.4	-1	reviewed	p.R202I	1.000	249	0%	86	31.4%	12	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Fra10Ac1
PLCE1	51196	genome.wustl.edu	37	10	95791750	95791750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016341.3	+1	reviewed	p.K316T	0.987	107	0%	62	45.2%	1	100%	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	superfamily_Ras GEF
PLCE1	51196	genome.wustl.edu	37	10	96022428	96022428	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016341.3	+1	reviewed	p.D1331A	1.000	161	0%	64	17.2%	9	22.2%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_efhand_like,superfamily_EF-hand
CYP2C18	1562	genome.wustl.edu	37	10	96447945	96447945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000772.2	+1	reviewed	p.R132Q	0.987	300	0.3%	162	24.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_p450,superfamily_Cytochrome P450
C10orf129	142827	genome.wustl.edu	37	10	96967018	96967018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207321.2	+1	validated	p.Q153K	0.003	110	0%	46	39.1%	0	-	benign(0.202)	deleterious(0.01)	neutral(0.425)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PDLIM1	9124	genome.wustl.edu	37	10	96998374	96998374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020992.2	-1	provisional	p.G252R	1.000	146	0%	134	34.3%	290	22.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PDLIM1	9124	genome.wustl.edu	37	10	97007027	97007027	+	Silent	SNP	C	C	T	rs141682059	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020992.2	-1	provisional	p.P210	0.000	123	0%	91	27.5%	183	21.8%	-	-	-	NULL
TLL2	7093	genome.wustl.edu	37	10	98146750	98146750	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012465.3	-1	validated	p.D604	0.949	62	1.6%	71	28.2%	0	-	-	-	-	HMMSmart_EGF_CA,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF57196
TM9SF3	56889	genome.wustl.edu	37	10	98336399	98336399	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020123.3	-1	validated	p.K97T	1.000	137	0%	170	37.6%	27	51.8%	benign(0.012)	tolerated(0.27)	neutral(0.034)	HMMPfam_EMP70
PIK3AP1	118788	genome.wustl.edu	37	10	98386571	98386571	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152309.2	-1	validated	p.A521	0.943	125	0%	63	9.5%	4	0%	-	-	-	NULL
C10orf12	26148	genome.wustl.edu	37	10	98741244	98741244	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015652.2	+1	predicted	p.L33V	1.000	116	0%	76	27.6%	1	100%	benign(0.009)	tolerated(0.43)	neutral(0.014)	NULL
RRP12	23223	genome.wustl.edu	37	10	99131877	99131877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015179.3	-1	validated	p.E766K	1.000	59	0%	101	41.6%	42	38%	probably_damaging(0.99)	tolerated(0.63)	neutral(0.445)	superfamily_ARM repeat
ZDHHC16	84287	genome.wustl.edu	37	10	99215505	99215507	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032327.2	+1	validated	p.K306in_frame_del	1.000:0.988:0.995	-	-	-	-	-	-	-	-	-	NULL
SFRP5	6425	genome.wustl.edu	37	10	99527516	99527516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003015.3	-1	reviewed	p.R237C	1.000	112	0%	192	12.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_TIMP_like,HMMPfam_NTR,HMMSmart_C345C
C10orf28	27291	genome.wustl.edu	37	10	99968142	99968142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014472.4	+1	validated	p.K91E	0.966	67	0%	48	22.9%	4	75%	possibly_damaging(0.896)	deleterious(0.03)	deleterious(0.718)	NULL
HPSE2	60495	genome.wustl.edu	37	10	100503736	100503736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021828.4	-1	reviewed	p.R230C	1.000	139	0%	75	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_79n
HPSE2	60495	genome.wustl.edu	37	10	100995356	100995356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021828.4	-1	reviewed	p.K68N	1.000	150	0%	226	31%	1	100%	possibly_damaging(0.922)	tolerated(0.05)	deleterious(0.717)	NULL
SLC25A28	81894	genome.wustl.edu	37	10	101371024	101371024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031212.3	-1	validated	p.R226H	1.000	86	0%	91	30.8%	66	48.4%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
ABCC2	1244	genome.wustl.edu	37	10	101559098	101559098	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000392.3	+1	reviewed	p.I334	0.012	158	0%	84	29.8%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC2	1244	genome.wustl.edu	37	10	101569957	101569957	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000392.3	+1	reviewed	p.R628*	1.000	107	0%	39	15.4%	0	-	-	-	-	NULL
DNMBP	23268	genome.wustl.edu	37	10	101668726	101668726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015221.2	-1	validated	p.P813L	1.000	148	0%	76	48.7%	8	12.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ERLIN1	10613	genome.wustl.edu	37	10	101915948	101915948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100626.1	-1	validated	p.Q233H	1.000	204	0%	194	37.1%	9	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	NULL
ERLIN1	10613	genome.wustl.edu	37	10	101927120	101927120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100626.1	-1	validated	p.R183I	1.000	298	0%	128	22.7%	9	0%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Band_7,HMMSmart_SM00244
CHUK	1147	genome.wustl.edu	37	10	101979080	101979080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001278.3	-1	reviewed	p.D171Y	1.000	138	0%	196	29.6%	9	33.3%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CWF19L1	55280	genome.wustl.edu	37	10	102005629	102005629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018294.4	-1	validated	p.K297N	1.000	171	0%	107	27.1%	17	41.1%	benign(0.042)	tolerated(0.4)	neutral(0.018)	NULL
HIF1AN	55662	genome.wustl.edu	37	10	102304802	102304802	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017902.2	+1	validated	p.F224	1.000	75	0%	108	38%	42	42.8%	-	-	-	HMMSmart_JmjC,superfamily_SSF51197
SEMA4G	57715	genome.wustl.edu	37	10	102740947	102740947	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017893.2	+1	reviewed	p.E556*	1.000	83	0%	183	32.2%	9	33.3%	-	-	-	HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold
LZTS2	84445	genome.wustl.edu	37	10	102763510	102763510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032429.1	+1	provisional	p.D219N	1.000	15	0%	27	29.6%	104	48%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
BTRC	8945	genome.wustl.edu	37	10	103292062	103292062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033637.2	+1	reviewed	p.S284Y	1.000	96	0%	218	27.1%	12	41.6%	benign(0.309)	deleterious(0.01)	deleterious(0.502)	superfamily_F-box domain
BTRC	8945	genome.wustl.edu	37	10	103292745	103292745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033637.2	+1	reviewed	p.L339F	1.000	99	0%	201	29.9%	17	41.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HPS6	79803	genome.wustl.edu	37	10	103826224	103826224	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024747.4	+1	reviewed	p.T331	0.000	35	0%	80	26.3%	16	43.7%	-	-	-	NULL
HPS6	79803	genome.wustl.edu	37	10	103827231	103827231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024747.4	+1	reviewed	p.R667Q	0.998	66	0%	104	28.8%	29	41.3%	benign(0.071)	tolerated(0.39)	neutral(0.021)	NULL
NOLC1	9221	genome.wustl.edu	37	10	103920264	103920264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004741.3	+1	validated	p.K385N	0.627	61	0%	41	56.1%	97	34%	unknown(0)	deleterious(0.02)	-	NULL
AS3MT	57412	genome.wustl.edu	37	10	104636765	104636765	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000369880	+1	known	p.E195*	0.993	276	0%	280	34.6%	8	12.5%	-	-	-	superfamily_SSF53335
CNNM2	54805	genome.wustl.edu	37	10	104809562	104809562	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017649.3	+1	validated	p.E574*	1.000	169	0%	130	27.7%	1	0%	-	-	-	HMMPfam_CBS
TAF5	6877	genome.wustl.edu	37	10	105143015	105143015	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006951.3	+1	reviewed	p.E519*	1.000	102	0%	75	36%	4	25%	-	-	-	superfamily_WD40 repeat-like
PDCD11	22984	genome.wustl.edu	37	10	105165860	105165860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014976.1	+1	validated	p.N228S	1.000	45	0%	57	35.1%	14	71.4%	benign(0.014)	tolerated(0.42)	neutral(0.015)	superfamily_Nucleic_acid_OB,HMMSmart_S1
PDCD11	22984	genome.wustl.edu	37	10	105187117	105187117	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014976.1	+1	validated	p.R1113*	0.785	115	0%	80	30%	26	11.5%	-	-	-	superfamily_Nucleic_acid_OB
CALHM1	255022	genome.wustl.edu	37	10	105218079	105218079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001412.3	-1	reviewed	p.A144T	0.460	10	0%	19	47.4%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105484112	105484112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014631.2	-1	validated	p.V105A	0.996	32	0%	44	50%	1	0%	possibly_damaging(0.917)	deleterious(0.01)	deleterious(0.774)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
SLK	9748	genome.wustl.edu	37	10	105750505	105750505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014720.2	+1	provisional	p.D75Y	1.000	169	0%	95	25.3%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
COL17A1	1308	genome.wustl.edu	37	10	105795035	105795035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000494.3	-1	reviewed	p.S1202L	0.947	46	0%	53	37.7%	1	0%	unknown(0)	tolerated(0.14)	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105923958	105923958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025145.5	-1	provisional	p.R1047Q	0.877	213	0%	96	33.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_WD40 repeat-like
WDR96	80217	genome.wustl.edu	37	10	105971860	105971860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025145.5	-1	provisional	p.F214V	0.782	56	0%	54	25.9%	0	-	probably_damaging(0.999)	tolerated(0.48)	deleterious(0.501)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106130713	106130713	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008723.1	+1	validated	p.E331*	1.000	113	0%	45	22.2%	0	-	-	-	-	NULL
SORCS3	22986	genome.wustl.edu	37	10	106865184	106865184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014978.1	+1	reviewed	p.E375K	1.000	110	0%	57	40.4%	0	-	benign(0.008)	tolerated(0.41)	neutral(0.015)	HMMSmart_VPS10,superfamily_SSF110296
SORCS3	22986	genome.wustl.edu	37	10	106959828	106959828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014978.1	+1	reviewed	p.R694Q	1.000	78	0%	35	28.6%	0	-	probably_damaging(0.972)	tolerated(0.22)	neutral(0.456)	HMMSmart_VPS10,superfamily_SSF110296
SORCS1	114815	genome.wustl.edu	37	10	108357121	108357121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013031.1	-1	reviewed	p.H1085N	1.000	140	0%	52	34.6%	0	-	benign(0.365)	tolerated(0.1)	neutral(0.402)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108437080	108437080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013031.1	-1	reviewed	p.R608Q	1.000	160	0%	50	38%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_VPS10,superfamily_SSF110296
XPNPEP1	7511	genome.wustl.edu	37	10	111674830	111674830	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000502935	-1	known	p.R20S	0.987	193	0%	161	29.8%	48	37.5%	benign(0.343)	deleterious(0)	deleterious(0.552)	NULL
DUSP5	1847	genome.wustl.edu	37	10	112262489	112262489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004419.3	+1	reviewed	p.E130D	1.000	84	0%	156	32.1%	5	0%	benign(0.254)	tolerated(0.28)	neutral(0.057)	HMMSmart_RHOD,superfamily_Rhodanese-like
SMC3	9126	genome.wustl.edu	37	10	112344107	112344107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005445.3	+1	reviewed	p.L420V	1.000	102	0%	78	30.8%	23	39.1%	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC3	9126	genome.wustl.edu	37	10	112360222	112360222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005445.3	+1	reviewed	p.R818I	1.000	71	0%	50	34%	17	52.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SHOC2	8036	genome.wustl.edu	37	10	112724715	112724715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007373.3	+1	reviewed	p.R200H	1.000	76	0%	33	24.2%	18	38.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
GPAM	57678	genome.wustl.edu	37	10	113933573	113933573	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020918.4	-1	validated	p.A148	0.185	121	0%	93	24.7%	3	100%	-	-	-	NULL
GPAM	57678	genome.wustl.edu	37	10	113935437	113935437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020918.4	-1	validated	p.V112I	0.736	105	0%	133	30.1%	4	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
ZDHHC6	64429	genome.wustl.edu	37	10	114192192	114192192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022494.1	-1	provisional	p.E345K	1.000	236	0%	196	32.7%	52	46.1%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_SH3_2
DCLRE1A	9937	genome.wustl.edu	37	10	115612923	115612923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014881.3	-1	provisional	p.E7K	1.000	90	0%	118	35.6%	1	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NHLRC2	374354	genome.wustl.edu	37	10	115639353	115639353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198514.2	+1	provisional	p.D270Y	1.000	68	0%	20	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NHL repeat
C10orf118	55088	genome.wustl.edu	37	10	115887398	115887398	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018017.2	-1	validated	p.R739*	1.000	168	0%	84	32.1%	10	30%	-	-	-	NULL
TDRD1	56165	genome.wustl.edu	37	10	115963932	115963932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198795.1	+1	reviewed	p.R361I	0.974	116	0%	68	29.4%	0	-	possibly_damaging(0.931)	tolerated(0.45)	neutral(0.390)	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
TDRD1	56165	genome.wustl.edu	37	10	115964631	115964631	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198795.1	+1	reviewed	p.E426*	0.471	137	0%	47	38.3%	0	-	-	-	-	NULL
VWA2	340706	genome.wustl.edu	37	10	116048761	116048761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198496.1	+1	provisional	p.E545D	1.000	50	0%	49	26.5%	27	25.9%	benign(0.004)	tolerated(0.52)	neutral(0.009)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
AFAP1L2	84632	genome.wustl.edu	37	10	116061185	116061185	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001936.1	-1	validated	p.I490	0.661	115	0%	179	35.2%	4	0%	-	-	-	NULL
ABLIM1	3983	genome.wustl.edu	37	10	116233716	116233716	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002313.5	-1	reviewed	e9-1	1.000	115	0%	71	38%	0	-	-	-	-	-
ATRNL1	26033	genome.wustl.edu	37	10	116975620	116975620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207303.2	+1	validated	p.E505G	1.000	96	0%	39	35.9%	0	-	benign(0.046)	tolerated(0.08)	neutral(0.302)	superfamily_Galactose oxidase central domain
ATRNL1	26033	genome.wustl.edu	37	10	117045863	117045863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207303.2	+1	validated	p.E791*	1.000	145	0%	84	38.1%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ATRNL1	26033	genome.wustl.edu	37	10	117075103	117075103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207303.2	+1	validated	p.S965I	1.000	97	0%	60	40%	0	-	benign(0.302)	deleterious(0)	deleterious(0.538)	HMMPfam_PSI,HMMSmart_SM00423
PNLIP	5406	genome.wustl.edu	37	10	118307930	118307930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000936.2	+1	reviewed	p.T87I	1.000	158	0%	106	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIPRP2	5408	genome.wustl.edu	37	10	118385530	118385530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005396.4	+1	validated	p.S94P	1.000	87	0%	171	21.1%	0	-	benign(0.039)	tolerated(0.06)	neutral(0.325)	NULL
PNLIPRP2	5408	genome.wustl.edu	37	10	118389501	118389501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000433618	+1	known	p.R209W	0.999	76	0%	171	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
C10orf82	143379	genome.wustl.edu	37	10	118424298	118424298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144661.2	-1	predicted	p.K145N	0.004	108	0%	117	25.6%	1	0%	possibly_damaging(0.739)	deleterious(0.03)	deleterious(0.635)	NULL
HSPA12A	259217	genome.wustl.edu	37	10	118439235	118439235	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025015.2	-1	validated	p.F355	1.000	101	0%	105	25.7%	4	50%	-	-	-	superfamily_SSF53067
KCNK18	338567	genome.wustl.edu	37	10	118969585	118969585	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181840.1	+1	provisional	p.F310	0.293	297	0%	303	33.3%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
FAM204A	63877	genome.wustl.edu	37	10	120094924	120094924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134672.1	-1	validated	p.E113*	1.000	118	0%	81	29.6%	16	6.2%	-	-	-	NULL
PRDX3	10935	genome.wustl.edu	37	10	120933335	120933335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006793.2	-1	reviewed	p.E121K	1.000	74	0%	162	30.2%	203	37.4%	benign(0.184)	tolerated(0.05)	neutral(0.362)	HMMPfam_AhpC-TSA,superfamily_Thiordxn-like_fd
TIAL1	7073	genome.wustl.edu	37	10	121336585	121336585	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000369092	-1	known	p.R251*	0.126	97	0%	51	43.1%	5	20%	-	-	-	NULL
INPP5F	22876	genome.wustl.edu	37	10	121581953	121581953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014937.2	+1	reviewed	p.E657K	1.000	173	0%	298	30.2%	4	25%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	NULL
SEC23IP	11196	genome.wustl.edu	37	10	121674317	121674317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007190.2	+1	reviewed	p.S463N	1.000	451	0%	355	31%	25	40%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
WDR11	55717	genome.wustl.edu	37	10	122622323	122622323	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018117.11	+1	reviewed	p.V201	0.194	121	0%	159	31.4%	9	88.8%	-	-	-	superfamily_WD40_like
WDR11	55717	genome.wustl.edu	37	10	122649475	122649475	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018117.11	+1	reviewed	p.L766*	0.996	121	0%	59	25.4%	17	58.8%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
TACC2	10579	genome.wustl.edu	37	10	123843219	123843219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206862.2	+1	reviewed	p.P402S	0.000	32	0%	29	44.8%	3	33.3%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
BTBD16	118663	genome.wustl.edu	37	10	124091965	124091965	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144587.2	+1	validated	p.G367	0.257	111	0%	112	12.5%	0	-	-	-	-	NULL
DMBT1	1755	genome.wustl.edu	37	10	124354011	124354011	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007329.2	+1	reviewed	e22-1	0.001	506	0.2%	270	26.3%	0	-	-	-	-	-
DMBT1	1755	genome.wustl.edu	37	10	124361370	124361370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007329.2	+1	reviewed	p.R1134Q	0.906	106	0%	75	33.3%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124392403	124392403	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007329.2	+1	reviewed	p.N2003H	0.000	219	0%	168	28%	0	-	possibly_damaging(0.506)	tolerated(0.52)	neutral(0.178)	superfamily_Spermadhesin CUB domain
CUZD1	50624	genome.wustl.edu	37	10	124595731	124595731	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022034.4	-1	provisional	p.F318C	0.989	281	0%	148	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
CUZD1	50624	genome.wustl.edu	37	10	124605317	124605317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022034.4	-1	provisional	p.L15I	0.000	138	0%	68	27.9%	0	-	benign(0.041)	tolerated(0.12)	neutral(0.263)	NULL
FAM24B	196792	genome.wustl.edu	37	10	124610024	124610024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152644.2	-1	validated	p.V3A	0.032	114	0%	74	37.8%	2	0%	unknown(0)	deleterious(0)	-	NULL
CPXM2	119587	genome.wustl.edu	37	10	125516831	125516831	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198148.2	-1	validated	p.F605	0.992	122	0%	144	27.8%	3	0%	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPXM2	119587	genome.wustl.edu	37	10	125521574	125521574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198148.2	-1	validated	p.R531W	0.971	44	0%	58	31%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
OAT	4942	genome.wustl.edu	37	10	126097379	126097379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000274.3	-1	reviewed	p.V119I	1.000	124	0%	133	48.9%	29	34.4%	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major
FAM175B	23172	genome.wustl.edu	37	10	126517980	126517980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032182.3	+1	validated	p.K199N	1.000	323	0%	132	25%	9	11.1%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	NULL
ZRANB1	54764	genome.wustl.edu	37	10	126631481	126631481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017580.2	+1	validated	p.Y140C	1.000	142	0%	74	35.1%	16	43.7%	probably_damaging(0.967)	tolerated(0.13)	deleterious(0.661)	superfamily_SSF90209
C10orf122	387718	genome.wustl.edu	37	10	127344705	127344705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128202.1	-1	validated	p.L109I	0.999	196	0%	68	29.4%	0	-	probably_damaging(0.981)	tolerated(0.21)	deleterious(0.469)	NULL
C10orf137	26098	genome.wustl.edu	37	10	127417936	127417936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015608.2	+1	validated	p.N268H	1.000	170	0%	124	41.1%	11	45.4%	probably_damaging(0.986)	tolerated(0.21)	deleterious(0.478)	NULL
ADAM12	8038	genome.wustl.edu	37	10	127760213	127760213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003474.4	-1	reviewed	p.P389T	1.000	70	0%	43	46.5%	9	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
C10orf90	118611	genome.wustl.edu	37	10	128150020	128150020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004298.2	-1	validated	p.E557K	0.048	165	0%	107	40.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C10orf90	118611	genome.wustl.edu	37	10	128202508	128202508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004298.2	-1	validated	p.G8V	0.993	257	0%	206	29.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DOCK1	1793	genome.wustl.edu	37	10	129172083	129172083	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000398025	+1	known	p.V1202	1.000	270	0%	185	28.6%	24	37.5%	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	129224264	129224264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000398025	+1	known	p.V1680I	0.800	68	0%	97	34%	26	46.1%	benign(0.001)	tolerated(0.42)	neutral(0.014)	NULL
MKI67	4288	genome.wustl.edu	37	10	129901217	129901217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002417.4	-1	reviewed	p.L2963I	0.000	132	0%	70	30%	28	46.4%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
MKI67	4288	genome.wustl.edu	37	10	129903332	129903332	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002417.4	-1	reviewed	p.R2258*	0.000	397	0%	290	37.9%	53	33.9%	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129904042	129904042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002417.4	-1	reviewed	p.T2021M	0.000	348	0.3%	228	28.1%	40	65%	probably_damaging(0.983)	tolerated(0.15)	deleterious(0.670)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129906132	129906132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002417.4	-1	reviewed	p.E1324D	0.000	291	0%	184	31%	6	50%	benign(0.006)	tolerated(0.74)	neutral(0.002)	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129910580	129910580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002417.4	-1	reviewed	p.R596C	0.012	101	0%	97	37.1%	15	53.3%	benign(0.068)	tolerated(0.16)	neutral(0.064)	NULL
MKI67	4288	genome.wustl.edu	37	10	129913602	129913602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002417.4	-1	reviewed	p.S357Y	0.001	101	0%	97	29.9%	7	28.5%	probably_damaging(0.965)	tolerated(0.09)	deleterious(0.704)	NULL
GLRX3	10539	genome.wustl.edu	37	10	131943557	131943557	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006541.3	+1	provisional	p.E59*	0.993	150	0%	159	30.8%	40	25%	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
GLRX3	10539	genome.wustl.edu	37	10	131958099	131958099	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000486974	+1	known	NULL	1.000	51	0%	26	38.5%	0	-	-	-	-	-
TCERG1L	256536	genome.wustl.edu	37	10	132891531	132891531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174937.3	-1	validated	p.R552Q	0.954	194	0%	406	34.7%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_FF,HMMSmart_FF,superfamily_FF
DPYSL4	10570	genome.wustl.edu	37	10	134008496	134008496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006426.2	+1	validated	p.A154V	1.000	33	0%	54	33.3%	13	92.3%	possibly_damaging(0.44)	tolerated(0.44)	neutral(0.156)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
DPYSL4	10570	genome.wustl.edu	37	10	134016167	134016167	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006426.2	+1	validated	p.I433	0.132	46	0%	108	24.1%	4	0%	-	-	-	superfamily_Composite domain of metallo-dependent hydrolases
LRRC27	80313	genome.wustl.edu	37	10	134175022	134175022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143757.1	+1	validated	p.P411L	0.004	87	0%	197	40.1%	5	100%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
C10orf91	170393	genome.wustl.edu	37	10	134261464	134261464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173541.2	+1	validated	p.D113Y	0.001	64	0%	101	27.7%	1	0%	possibly_damaging(0.479)	-	-	NULL
TTC40	54777	genome.wustl.edu	37	10	134659620	134659620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000368586	-1	known	p.D2127Y	0.004	30	0%	51	29.4%	0	-	possibly_damaging(0.828)	deleterious(0.02)	deleterious(0.697)	NULL
TTC40	54777	genome.wustl.edu	37	10	134750467	134750467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173572.3	-1	validated	p.K251N	0.291	183	0%	310	33.5%	0	-	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	NULL
TTC40	54777	genome.wustl.edu	37	10	134751063	134751063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173572.3	-1	validated	p.S218Y	0.718	77	0%	170	29.4%	0	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	NULL
VENTX	27287	genome.wustl.edu	37	10	135053551	135053551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014468.2	+1	reviewed	p.S173Y	0.002	43	0%	79	39.2%	0	-	possibly_damaging(0.926)	tolerated(0.11)	deleterious(0.646)	NULL
MIR202	574448	genome.wustl.edu	37	10	135061080	135061080	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000362219	-1	known	NULL	1.000	71	0%	148	29.1%	0	-	-	-	-	-
TUBGCP2	10844	genome.wustl.edu	37	10	135103348	135103348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006659.2	-1	validated	p.A447V	1.000	104	0%	181	30.4%	82	53.6%	benign(0.334)	deleterious(0.01)	deleterious(0.511)	HMMPfam_Spc97_Spc98
TUBGCP2	10844	genome.wustl.edu	37	10	135116412	135116412	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006659.2	-1	validated	p.E12*	1.000	124	0%	262	39.7%	23	30.4%	-	-	-	NULL
PAOX	196743	genome.wustl.edu	37	10	135193714	135193714	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152911.2	+1	validated	p.A131	0.019	19	0%	41	29.3%	8	37.5%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
SYCE1	93426	genome.wustl.edu	37	10	135372812	135372812	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143764.1	-1	validated	p.V63	0.976	96	0%	97	30.9%	0	-	-	-	-	NULL
PHRF1	57661	genome.wustl.edu	37	11	607474	607474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020901.2	+1	validated	p.R672I	0.814	52	0%	62	33.9%	33	57.5%	benign(0.278)	deleterious(0)	deleterious(0.475)	NULL
IRF7	3665	genome.wustl.edu	37	11	612681	612681	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004031.2	-1	reviewed	p.I505	0.000	55	0%	125	36.8%	50	24%	-	-	-	NULL
SLC25A22	79751	genome.wustl.edu	37	11	792318	792318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024698.4	-1	provisional	p.V243A	0.998	26	0%	36	38.9%	55	50.9%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
AP2A2	161	genome.wustl.edu	37	11	988681	988681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012305.2	+1	validated	p.E421K	1.000	49	0%	106	39.6%	123	42.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Adaptin_N,superfamily_ARM repeat
MUC6	4588	genome.wustl.edu	37	11	1017672	1017672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005961.2	-1	validated	p.S1710F	0.000	1795	0%	2993	8.7%	66	12.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
MUC6	4588	genome.wustl.edu	37	11	1025030	1025030	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005961.2	-1	validated	p.F1013	0.102	58	0%	92	37%	3	66.6%	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
MUC6	4588	genome.wustl.edu	37	11	1026030	1026030	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005961.2	-1	validated	p.F886	0.669	51	0%	100	36%	5	60%	-	-	-	HMMPfam_VWD,HMMSmart_SM00216,HMMSmart_SM00215
MUC6	4588	genome.wustl.edu	37	11	1028678	1028678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005961.2	-1	validated	p.T520N	0.348	31	0%	68	10.3%	2	50%	unknown(0)	tolerated(0.11)	-	HMMPfam_VWD,HMMSmart_SM00216
MUC6	4588	genome.wustl.edu	37	11	1031887	1031887	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005961.2	-1	validated	p.I94	0.156	43	0%	84	32.1%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
MUC5B	727897	genome.wustl.edu	37	11	1255046	1255046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002458.1	+1	validated	p.S785I	0.988	33	0%	58	22.4%	1	100%	benign(0.018)	-	-	HMMSmart_SM00214
MUC5B	727897	genome.wustl.edu	37	11	1255863	1255863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002458.1	+1	validated	p.E864D	0.624	43	0%	61	31.1%	0	-	benign(0.195)	-	-	HMMSmart_SM00214,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors
MUC5B	727897	genome.wustl.edu	37	11	1267632	1267632	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002458.1	+1	validated	p.T3177	0.000	225	0.4%	311	42.4%	1	100%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271222	1271222	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002458.1	+1	validated	p.T4375fs	0.000	-	-	-	-	-	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271225	1271226	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	CG	CG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002458.1	+1	validated	p.T4375fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1272168	1272168	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002458.1	+1	validated	p.T4689	0.000	491	0%	762	26.8%	2	50%	-	-	-	NULL
BRSK2	9024	genome.wustl.edu	37	11	1475826	1475826	+	Silent	SNP	C	C	T	rs147039698	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003957.2	+1	validated	p.H552	0.633	29	0%	62	12.9%	3	33.3%	-	-	-	NULL
KRTAP5-4	387267	genome.wustl.edu	37	11	1643054	1643054	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012709.1	-1	provisional	p.G90	0.996	133	0%	170	11.2%	0	-	-	-	-	NULL
TNNI2	7136	genome.wustl.edu	37	11	1862136	1862136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003282.3	+1	reviewed	p.E92K	1.000	29	0%	65	33.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Troponin
TNNT3	7140	genome.wustl.edu	37	11	1955004	1955004	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006757.3	+1	reviewed	p.I75	0.962	69	0%	114	35.1%	0	-	-	-	-	HMMPfam_Troponin
TSSC4	10078	genome.wustl.edu	37	11	2423909	2423909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005706.2	+1	reviewed	p.E16K	0.000	28	0%	78	29.5%	119	31%	benign(0.007)	tolerated(0.28)	neutral(0.032)	NULL
NAP1L4	4676	genome.wustl.edu	37	11	2979719	2979719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005969.3	-1	reviewed	p.K268Q	1.000	294	0%	242	32.2%	159	53.4%	possibly_damaging(0.81)	tolerated(0.1)	deleterious(0.591)	HMMPfam_NAP
ZNF195	7748	genome.wustl.edu	37	11	3380445	3380445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130520.1	-1	validated	p.R598I	1.000	138	0%	120	31.7%	18	44.4%	possibly_damaging(0.476)	tolerated(0.23)	neutral(0.199)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF195	7748	genome.wustl.edu	37	11	3380949	3380949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130520.1	-1	validated	p.R430I	0.986	137	0%	60	33.3%	28	46.4%	benign(0.351)	tolerated(0.35)	neutral(0.132)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NUP98	4928	genome.wustl.edu	37	11	3794885	3794885	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016320.4	-1	reviewed	p.E194*	1.000	200	0%	124	29.8%	15	13.3%	-	-	-	superfamily_SSF88633
OR51E2	81285	genome.wustl.edu	37	11	4703553	4703553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030774.3	-1	validated	p.R130H	1.000	32	0%	25	32%	0	-	probably_damaging(0.999)	tolerated(0.36)	deleterious(0.510)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52R1	119695	genome.wustl.edu	37	11	4825842	4825842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005177.3	-1	validated	p.F2L	0.000	64	0%	25	36%	0	-	unknown(0)	-	-	NULL
OR51F2	119694	genome.wustl.edu	37	11	4843542	4843542	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004753.1	+1	provisional	p.K309	0.995	143	0%	106	23.6%	0	-	-	-	-	superfamily_SSF81321
OR51S1	119692	genome.wustl.edu	37	11	4869657	4869657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004758.1	-1	provisional	p.P261H	0.979	67	0%	39	10.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51A7	119687	genome.wustl.edu	37	11	4929394	4929394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004749.1	+1	provisional	p.K265N	0.002	192	0%	87	27.6%	0	-	benign(0.193)	deleterious(0.05)	neutral(0.363)	HMMPfam_7tm_1,superfamily_SSF81321
OR51G1	79324	genome.wustl.edu	37	11	4945280	4945280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005237.1	-1	provisional	p.P97H	0.006	74	0%	36	41.7%	0	-	probably_damaging(0.976)	tolerated(0.23)	neutral(0.459)	HMMPfam_7tm_1,superfamily_SSF81321
OR52J3	119679	genome.wustl.edu	37	11	5067941	5067941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001916.2	+1	validated	p.F62L	1.000	182	0%	97	28.9%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52J3	119679	genome.wustl.edu	37	11	5068546	5068546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001916.2	+1	validated	p.R264Q	0.113	217	0%	107	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51V1	283111	genome.wustl.edu	37	11	5221169	5221169	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004760.2	-1	validated	p.I254	0.676	81	0%	57	28.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51V1	283111	genome.wustl.edu	37	11	5221357	5221357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004760.2	-1	validated	p.D192Y	0.008	26	0%	17	47.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51V1	283111	genome.wustl.edu	37	11	5221481	5221481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004760.2	-1	validated	p.I150M	0.000	31	0%	22	50%	0	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HBE1	3046	genome.wustl.edu	37	11	5290712	5290712	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005330.3	-1	reviewed	p.K96T	1.000	153	0%	58	32.8%	0	-	possibly_damaging(0.769)	deleterious(0)	deleterious(0.730)	HMMPfam_Globin,superfamily_Globin-like
OR51I1	390063	genome.wustl.edu	37	11	5462531	5462531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005288.2	-1	validated	p.D72Y	1.000	93	0%	73	32.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51I2	390064	genome.wustl.edu	37	11	5475325	5475325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004754.2	+1	validated	p.L203I	0.172	351	0%	331	30.5%	0	-	probably_damaging(0.996)	tolerated(0.37)	deleterious(0.481)	HMMPfam_7tm_1,superfamily_SSF81321
OR51I2	390064	genome.wustl.edu	37	11	5475418	5475418	+	Missense_Mutation	SNP	C	C	T	rs181429737	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004754.2	+1	validated	p.R234C	0.032	206	0%	215	35.8%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
UBQLNL	143630	genome.wustl.edu	37	11	5537017	5537017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145053.4	-1	validated	p.S219A	1.000	95	0%	54	31.5%	2	100%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5653761	5653761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003819.2	+1	reviewed	p.H421R	0.053	102	0%	66	30.3%	10	40%	benign(0.046)	deleterious(0)	neutral(0.447)	superfamily_SSF57850
TRIM5	85363	genome.wustl.edu	37	11	5687250	5687250	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033034.2	-1	reviewed	p.R277*	0.000	247	0.4%	211	26.1%	8	25%	-	-	-	NULL
TRIM22	10346	genome.wustl.edu	37	11	5717532	5717532	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006074.3	+1	reviewed	p.E24*	0.503	108	0%	122	27%	48	33.3%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
OR56B1	387748	genome.wustl.edu	37	11	5758568	5758568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005180.1	+1	provisional	p.E274D	0.000	127	0%	74	33.8%	0	-	benign(0.248)	deleterious(0.03)	neutral(0.390)	HMMPfam_7tm_1,superfamily_SSF81321
OR52N4	390072	genome.wustl.edu	37	11	5776031	5776031	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005175.2	+1	validated	p.G21*	1.000	136	0%	75	32%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR52N5	390075	genome.wustl.edu	37	11	5799061	5799061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001922.2	-1	validated	p.F268L	0.743	127	0%	91	9.9%	0	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52E6	390078	genome.wustl.edu	37	11	5862348	5862348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005167.1	-1	provisional	p.F260L	0.000	85	0%	68	30.9%	0	-	benign(0.037)	deleterious(0.04)	neutral(0.351)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E8	390079	genome.wustl.edu	37	11	5878458	5878458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005168.1	-1	provisional	p.L159M	0.000	67	0%	16	50%	0	-	benign(0.015)	tolerated(0.07)	neutral(0.320)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E8	390079	genome.wustl.edu	37	11	5878597	5878597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005168.1	-1	provisional	p.F112L	0.431	113	0%	41	39%	0	-	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E8	390079	genome.wustl.edu	37	11	5878916	5878916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005168.1	-1	provisional	p.S6Y	0.069	71	0%	24	25%	0	-	benign(0.145)	tolerated(1)	neutral(0.013)	superfamily_SSF81321
OR52E4	390081	genome.wustl.edu	37	11	5905739	5905739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005165.1	+1	provisional	p.L73M	0.039	143	0%	56	21.4%	0	-	possibly_damaging(0.81)	deleterious(0.02)	deleterious(0.688)	HMMPfam_7tm_1,superfamily_SSF81321
OR56A4	120793	genome.wustl.edu	37	11	6023414	6023414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005179.2	-1	provisional	p.R322I	0.092	170	0%	128	28.1%	0	-	possibly_damaging(0.604)	tolerated(0.06)	deleterious(0.532)	HMMPfam_7tm_1,superfamily_SSF81321
CNGA4	1262	genome.wustl.edu	37	11	6261616	6261616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037329.2	+1	validated	p.R198C	0.768	19	0%	40	32.5%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
HPX	3263	genome.wustl.edu	37	11	6459672	6459672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000613.2	-1	reviewed	p.E135A	0.876	136	0%	115	35.7%	1	100%	benign(0.035)	tolerated(0.35)	neutral(0.022)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
TRIM3	10612	genome.wustl.edu	37	11	6478674	6478674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006458.2	-1	reviewed	p.V183A	1.000	34	0%	54	31.5%	13	0%	possibly_damaging(0.762)	deleterious(0.01)	deleterious(0.688)	HMMSmart_SM00502
DNHD1	144132	genome.wustl.edu	37	11	6530231	6530231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173589.3	+1	validated	p.W348G	0.999	138	0%	65	27.7%	4	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DNHD1	144132	genome.wustl.edu	37	11	6554265	6554265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144666.2	+1	provisional	p.L786M	0.950	76	0%	43	14%	0	-	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	NULL
DNHD1	144132	genome.wustl.edu	37	11	6567854	6567854	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144666.2	+1	provisional	p.P1895	0.000	33	0%	32	21.9%	0	-	-	-	-	NULL
DNHD1	144132	genome.wustl.edu	37	11	6569488	6569488	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144666.2	+1	provisional	p.L2318	0.397	80	0%	73	28.8%	2	50%	-	-	-	NULL
DNHD1	144132	genome.wustl.edu	37	11	6592569	6592569	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144666.2	+1	provisional	p.S4609	0.000	26	0%	62	29%	1	100%	-	-	-	HMMPfam_Dynein_heavy
TPP1	1200	genome.wustl.edu	37	11	6636546	6636546	+	Silent	SNP	C	C	T	rs34736006		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000391.3	-1	reviewed	p.T427	0.132	207	0%	285	29.1%	113	14.1%	-	-	-	superfamily_Subtilisin-like
TPP1	1200	genome.wustl.edu	37	11	6636679	6636679	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000391.3	-1	reviewed	p.S420	0.998	172	0%	274	33.2%	112	12.5%	-	-	-	superfamily_Subtilisin-like
DCHS1	8642	genome.wustl.edu	37	11	6645487	6645487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003737.2	-1	reviewed	p.D2474N	1.000	25	0%	38	31.6%	10	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6650806	6650806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003737.2	-1	reviewed	p.A1680T	0.974	89	0%	193	33.7%	2	0%	benign(0.007)	tolerated(0.54)	neutral(0.007)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR2AG2	338755	genome.wustl.edu	37	11	6789953	6789953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004490.1	-1	provisional	p.P79H	0.999	147	0%	113	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR2AG2	338755	genome.wustl.edu	37	11	6790024	6790024	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004490.1	-1	provisional	p.L55	0.987	169	0%	108	23.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10A5	144124	genome.wustl.edu	37	11	6867393	6867393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178168.1	+1	provisional	p.Q160H	1.000	157	0%	129	29.5%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_7tm_1,superfamily_SSF81321
OR2D2	120776	genome.wustl.edu	37	11	6913547	6913547	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003700.1	-1	provisional	p.F62C	1.000	130	0%	92	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR2D3	120775	genome.wustl.edu	37	11	6943099	6943099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004684.1	+1	provisional	p.M289I	0.138	134	0%	116	29.3%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF215	7762	genome.wustl.edu	37	11	6953544	6953544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013250.2	+1	validated	p.R14Q	0.234	58	0%	41	36.6%	0	-	benign(0)	tolerated(1)	-	NULL
ZNF215	7762	genome.wustl.edu	37	11	6977643	6977643	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013250.2	+1	validated	p.R479*	0.012	92	0%	65	32.3%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF214	7761	genome.wustl.edu	37	11	7022198	7022198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013249.2	-1	validated	p.R239I	1.000	94	0%	33	27.3%	2	100%	benign(0.395)	deleterious(0.04)	deleterious(0.476)	superfamily_C2H2 and C2HC zinc fingers
NLRP14	338323	genome.wustl.edu	37	11	7059837	7059837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176822.3	+1	reviewed	p.S7Y	0.868	73	0%	46	17.4%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	superfamily_DEATH_like
NLRP14	338323	genome.wustl.edu	37	11	7059846	7059846	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176822.3	+1	reviewed	p.F10C	0.997	77	0%	51	11.8%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_DEATH_like
NLRP14	338323	genome.wustl.edu	37	11	7064040	7064040	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176822.3	+1	reviewed	p.F261	0.999	85	0%	62	27.4%	0	-	-	-	-	HMMPfam_NACHT
RBMXL2	27288	genome.wustl.edu	37	11	7111393	7111393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014469.4	+1	reviewed	p.R348C	1.000	27	0%	32	25%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SYT9	143425	genome.wustl.edu	37	11	7334813	7334813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175733.3	+1	validated	p.K229E	1.000	176	0%	91	31.9%	0	-	benign(0.023)	tolerated(0.32)	neutral(0.025)	superfamily_C2_CaLB
SYT9	143425	genome.wustl.edu	37	11	7437302	7437302	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175733.3	+1	validated	p.F358L	1.000	202	0%	151	25.2%	0	-	possibly_damaging(0.922)	tolerated(0.22)	neutral(0.413)	superfamily_C2_CaLB
OVCH2	341277	genome.wustl.edu	37	11	7718093	7718093	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198185.2	-1	validated	p.L354	0.061	121	0%	48	33.3%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
OR10A6	390093	genome.wustl.edu	37	11	7949654	7949654	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004461.1	-1	provisional	p.E186*	0.006	63	0%	17	35.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR10A6	390093	genome.wustl.edu	37	11	7949870	7949870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004461.1	-1	provisional	p.L114I	1.000	73	0%	34	23.5%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR10A3	26496	genome.wustl.edu	37	11	7960255	7960255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003745.1	-1	provisional	p.K271N	0.878	286	0%	133	29.3%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10A3	26496	genome.wustl.edu	37	11	7960642	7960642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003745.1	-1	provisional	p.M142I	0.001	38	0%	21	42.9%	0	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NLRP10	338322	genome.wustl.edu	37	11	7981351	7981351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176821.3	-1	reviewed	p.S603Y	0.329	201	0%	148	39.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NLRP10	338322	genome.wustl.edu	37	11	7982017	7982017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176821.3	-1	reviewed	p.S381N	0.005	70	0%	42	35.7%	0	-	benign(0.084)	deleterious(0.01)	neutral(0.412)	NULL
LMO1	4004	genome.wustl.edu	37	11	8251941	8251941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002315.1	-1	reviewed	p.E46K	1.000	54	0%	76	36.8%	1	0%	possibly_damaging(0.883)	tolerated(0.08)	deleterious(0.645)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
STK33	65975	genome.wustl.edu	37	11	8457622	8457622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030906.2	-1	validated	p.G338*	1.000	95	0%	38	47.4%	3	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STK33	65975	genome.wustl.edu	37	11	8496329	8496329	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030906.2	-1	validated	p.M42L	0.983	182	0%	102	26.5%	0	-	benign(0.031)	tolerated(0.13)	neutral(0.254)	NULL
TRIM66	9866	genome.wustl.edu	37	11	8645915	8645915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014818.1	-1	validated	p.N828H	0.965	116	0%	80	31.2%	1	100%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
TRIM66	9866	genome.wustl.edu	37	11	8661825	8661825	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014818.1	-1	validated	p.I554	0.967	63	0%	63	17.5%	2	0%	-	-	-	NULL
ST5	6764	genome.wustl.edu	37	11	8717062	8717062	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005418.3	-1	reviewed	p.E1109D	1.000	180	0%	242	34.3%	46	28.2%	benign(0.017)	tolerated(0.19)	neutral(0.050)	NULL
C11orf16	56673	genome.wustl.edu	37	11	8947639	8947639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020643.2	-1	validated	p.E192G	1.000	69	0%	59	20.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ASCL3	56676	genome.wustl.edu	37	11	8959238	8959238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020646.1	-1	provisional	p.K157N	0.140	263	0%	137	30.7%	0	-	benign(0.195)	deleterious(0.04)	neutral(0.367)	superfamily_HLH helix-loop-helix DNA-binding domain
DENND5A	23258	genome.wustl.edu	37	11	9192204	9192204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015213.2	-1	validated	p.D676G	1.000	115	0%	83	31.3%	7	14.2%	probably_damaging(0.999)	tolerated(0.57)	deleterious(0.496)	NULL
ZNF143	7702	genome.wustl.edu	37	11	9496156	9496156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003442.5	+1	validated	p.A117S	1.000	148	0%	159	32.1%	10	20%	possibly_damaging(0.774)	deleterious(0.02)	deleterious(0.671)	NULL
ZNF143	7702	genome.wustl.edu	37	11	9530356	9530356	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003442.5	+1	validated	p.I446	0.600	174	0%	148	33.8%	32	50%	-	-	-	NULL
SBF2	81846	genome.wustl.edu	37	11	10011136	10011136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030962.3	-1	reviewed	p.A435P	1.000	197	0%	138	26.1%	2	100%	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	NULL
MRVI1	10335	genome.wustl.edu	37	11	10626024	10626024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098579.1	-1	reviewed	p.Q548H	1.000	356	0%	340	25.9%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_MRVI1
MRVI1	10335	genome.wustl.edu	37	11	10631315	10631315	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098579.1	-1	reviewed	p.L502M	1.000	62	0%	66	25.8%	1	0%	possibly_damaging(0.744)	tolerated(0.3)	neutral(0.302)	HMMPfam_MRVI1
MRVI1	10335	genome.wustl.edu	37	11	10647626	10647626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098579.1	-1	reviewed	p.E410K	1.000	38	0%	32	40.6%	2	0%	possibly_damaging(0.895)	tolerated(0.28)	neutral(0.384)	HMMPfam_MRVI1
CTR9	9646	genome.wustl.edu	37	11	10792055	10792055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014633.3	+1	provisional	p.D750Y	1.000	102	0%	71	42.3%	67	37.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TPR,superfamily_SSF48452
CTR9	9646	genome.wustl.edu	37	11	10797072	10797072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014633.3	+1	provisional	p.K996T	1.000	100	0%	47	10.6%	60	6.6%	unknown(0)	tolerated(0.24)	-	NULL
EIF4G2	1982	genome.wustl.edu	37	11	10823939	10823939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429377	-1	known	p.R420I	1.000	141	0%	198	15.7%	413	16.9%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
ZBED5	58486	genome.wustl.edu	37	11	10875618	10875618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143667.1	-1	reviewed	p.F292S	1.000	75	0%	110	30%	48	39.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZBED5	58486	genome.wustl.edu	37	11	10875972	10875972	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143667.1	-1	reviewed	p.S174*	1.000	226	0%	319	31.3%	27	59.2%	-	-	-	NULL
USP47	55031	genome.wustl.edu	37	11	11955420	11955420	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017944.3	+1	validated	p.E535*	1.000	120	0.8%	86	14%	21	23.8%	-	-	-	NULL
RASSF10	644943	genome.wustl.edu	37	11	13032360	13032360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080521.1	+1	provisional	p.S521P	0.998	31	0%	63	34.9%	6	33.3%	-	-	-	NULL
FAR1	84188	genome.wustl.edu	37	11	13732401	13732401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032228.5	+1	validated	p.W236L	1.000	85	0%	102	39.2%	41	48.7%	possibly_damaging(0.475)	tolerated(0.5)	neutral(0.167)	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd
SPON1	10418	genome.wustl.edu	37	11	14282206	14282206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000310358	+1	known	p.R634Q	1.000	76	0%	109	29.4%	4	0%	unknown(0)	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SPON1	10418	genome.wustl.edu	37	11	14284425	14284425	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000310358	+1	known	p.R721*	0.991	60	0%	97	29.9%	1	0%	-	-	-	NULL
COPB1	1315	genome.wustl.edu	37	11	14482815	14482815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144061.1	-1	reviewed	p.D825N	1.000	135	0%	92	33.7%	214	37.3%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMPfam_Coatamer_beta_C
PSMA1	5682	genome.wustl.edu	37	11	14539450	14539450	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148976.2	-1	reviewed	p.T48	0.840	189	0%	140	26.4%	173	34.1%	-	-	-	HMMPfam_Proteasome,superfamily_SSF56235
PDE3B	5140	genome.wustl.edu	37	11	14889259	14889259	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000922.3	+1	validated	p.E1032*	1.000	216	0%	91	33%	1	0%	-	-	-	superfamily_HD-domain/PDEase-like
CYP2R1	120227	genome.wustl.edu	37	11	14901712	14901712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024514.4	-1	reviewed	p.L324I	1.000	79	0%	39	25.6%	3	66.6%	probably_damaging(0.963)	tolerated(0.06)	deleterious(0.728)	HMMPfam_p450,superfamily_Cytochrome_P450
CALCA	796	genome.wustl.edu	37	11	14989374	14989374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033953.2	-1	reviewed	p.D85G	1.000	71	0%	98	29.6%	0	-	-	-	-	HMMPfam_Calc_CGRP_IAPP,HMMSmart_SM00113,PatternScan_CALCITONIN
INSC	387755	genome.wustl.edu	37	11	15247227	15247227	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031853.3	+1	provisional	p.V388	1.000	77	0%	72	27.8%	0	-	-	-	-	superfamily_ARM repeat
SOX6	55553	genome.wustl.edu	37	11	16256143	16256143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033326.3	-1	reviewed	p.L174I	1.000	297	0%	65	30.8%	1	100%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
NUCB2	4925	genome.wustl.edu	37	11	17351716	17351716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005013.2	+1	validated	p.E349K	1.000	36	0%	36	25%	37	29.7%	benign(0.135)	tolerated(0.14)	neutral(0.261)	NULL
ABCC8	6833	genome.wustl.edu	37	11	17474821	17474821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000352.3	-1	reviewed	p.L341I	0.994	109	0%	82	35.4%	0	-	benign(0.003)	tolerated(0.36)	neutral(0.020)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
USH1C	10083	genome.wustl.edu	37	11	17531111	17531111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153676.3	-1	reviewed	p.P602H	0.999	11	0%	15	53.3%	0	-	possibly_damaging(0.644)	deleterious(0)	deleterious(0.670)	NULL
USH1C	10083	genome.wustl.edu	37	11	17533528	17533528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153676.3	-1	reviewed	p.F445C	1.000	292	0%	309	30.1%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
KCNC1	3746	genome.wustl.edu	37	11	17757714	17757714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001112741.1	+1	reviewed	p.F55L	1.000	21	0%	45	37.8%	0	-	benign(0.372)	tolerated(0.06)	neutral(0.441)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
TPH1	7166	genome.wustl.edu	37	11	18042711	18042711	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004179.2	-1	reviewed	p.E388*	1.000	168	0%	148	31.1%	0	-	-	-	-	HMMPfam_Biopterin_H,superfamily_Aromatic aminoacid monoxygenases catalytic and oligomerization domains
SAA3P	6290	genome.wustl.edu	37	11	18134173	18134173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000278207	-1	known	p.E119D	0.000	57	0%	62	27.4%	0	-	-	-	-	HMMPfam_SAA,HMMSmart_SM00197
GTF2H1	2965	genome.wustl.edu	37	11	18359734	18359734	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142307.1	+1	validated	p.F142	1.000	236	0%	131	34.4%	13	30.7%	-	-	-	HMMPfam_BSD,HMMSmart_SM00751
LDHA	3939	genome.wustl.edu	37	11	18418501	18418501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005566.3	+1	reviewed	p.S38G	1.000	124	0%	196	25%	427	39.5%	benign(0.182)	deleterious(0.03)	neutral(0.381)	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains
LDHA	3939	genome.wustl.edu	37	11	18425415	18425415	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000379412	+1	known	e6-1	0.000	140	0%	110	29.1%	0	-	-	-	-	-
LDHA	3939	genome.wustl.edu	37	11	18428876	18428876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000396222	+1	known	p.L260I	0.341	176	0%	286	14%	516	1.1%	benign(0.224)	deleterious(0.01)	neutral(0.428)	NULL
UEVLD	55293	genome.wustl.edu	37	11	18596924	18596924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040697.1	-1	validated	p.F55V	1.000	147	0%	112	34.8%	4	50%	possibly_damaging(0.829)	deleterious(0.01)	deleterious(0.720)	HMMPfam_UEV,superfamily_UBC-like
PTPN5	84867	genome.wustl.edu	37	11	18754196	18754196	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006906.1	-1	validated	p.I424	1.000	77	0%	101	27.7%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPN5	84867	genome.wustl.edu	37	11	18762297	18762297	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006906.1	-1	validated	p.P256	0.835	20	0%	40	32.5%	0	-	-	-	-	NULL
PTPN5	84867	genome.wustl.edu	37	11	18764893	18764893	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006906.1	-1	validated	p.T125	0.000	108	0%	124	36.3%	0	-	-	-	-	NULL
PTPN5	84867	genome.wustl.edu	37	11	18765571	18765571	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006906.1	-1	validated	p.F91	0.558	49	0%	29	34.5%	0	-	-	-	-	NULL
NAV2	89797	genome.wustl.edu	37	11	19955170	19955170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182964.5	+1	validated	p.K460N	1.000	56	0%	52	21.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DBX1	120237	genome.wustl.edu	37	11	20178687	20178687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029865.1	-1	provisional	p.D190N	1.000	10	0%	39	20.5%	0	-	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
DBX1	120237	genome.wustl.edu	37	11	20180780	20180780	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029865.1	-1	provisional	p.F142	0.977	214	0%	404	32.9%	0	-	-	-	-	NULL
PRMT3	10196	genome.wustl.edu	37	11	20448370	20448370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005788.3	+1	validated	p.L318I	1.000	138	0%	76	32.9%	8	75%	possibly_damaging(0.945)	tolerated(0.08)	deleterious(0.690)	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LOC645490	645490	genome.wustl.edu	37	11	20596327	20596327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_928515.4	+1	model	p.K263N	1.000	42	0%	37	27%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
NELL1	4745	genome.wustl.edu	37	11	21135236	21135236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006157.3	+1	reviewed	p.R468C	1.000	267	0%	160	31.2%	53	37.7%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
ANO5	203859	genome.wustl.edu	37	11	22283748	22283748	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_213599.2	+1	reviewed	p.F568L	1.000	238	0%	82	32.9%	2	50%	benign(0.287)	tolerated(0.46)	neutral(0.100)	NULL
ANO5	203859	genome.wustl.edu	37	11	22294500	22294500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_213599.2	+1	reviewed	p.L734I	1.000	177	0%	120	22.5%	5	40%	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	HMMPfam_DUF590
LUZP2	338645	genome.wustl.edu	37	11	24936066	24936066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009909.2	+1	validated	p.K168N	1.000	297	0%	101	11.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ANO3	63982	genome.wustl.edu	37	11	26574805	26574805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031418.2	+1	validated	p.I433M	1.000	76	0%	44	29.5%	0	-	possibly_damaging(0.925)	tolerated(0.38)	neutral(0.391)	NULL
BBOX1	8424	genome.wustl.edu	37	11	27141378	27141378	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003986.2	+1	reviewed	p.K274	1.000	102	0%	54	33.3%	0	-	-	-	-	HMMPfam_TauD,superfamily_Clavaminate synthase-like
LGR4	55366	genome.wustl.edu	37	11	27412667	27412667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018490.2	-1	validated	p.I125M	0.999	160	0%	69	36.2%	31	32.2%	possibly_damaging(0.801)	tolerated(0.06)	deleterious(0.624)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
LIN7C	55327	genome.wustl.edu	37	11	27523375	27523375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018362.3	-1	validated	p.S44R	1.000	137	0%	144	25%	19	57.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00569,HMMPfam_L27
BDNF	627	genome.wustl.edu	37	11	27679880	27679880	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143810.1	-1	reviewed	p.R160	0.477	207	0%	205	45.9%	12	100%	-	-	-	NULL
BDNF	627	genome.wustl.edu	37	11	27679922	27679922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143810.1	-1	reviewed	p.E146K	0.858	180	0%	259	32.8%	15	93.3%	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
KIF18A	81930	genome.wustl.edu	37	11	28119446	28119446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031217.3	-1	validated	p.R17C	1.000	76	0%	75	38.7%	11	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KCNA4	3739	genome.wustl.edu	37	11	30032418	30032418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002233.2	-1	reviewed	p.S603Y	1.000	118	0%	182	33%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
LOC100288976	100288976	genome.wustl.edu	37	11	31086034	31086034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343074.1	-1	model	p.P388L	1.000	125	0%	43	18.6%	0	-	-	-	-	NULL
DCDC1	341019	genome.wustl.edu	37	11	31312267	31312267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181807.2	-1	validated	p.R296Q	0.998	188	0%	153	26.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF89837
PAX6	5080	genome.wustl.edu	37	11	31815663	31815663	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001604.4	-1	reviewed	e7-1	1.000	119	0%	164	28%	0	-	-	-	-	-
RCN1	5954	genome.wustl.edu	37	11	32118703	32118703	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002901.2	+1	reviewed	p.R90*	0.963	67	0%	92	30.4%	206	1.9%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
WT1-AS	51352	genome.wustl.edu	37	11	32460352	32460352	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_023920.1	+1	validated	NULL	0.000	40	0%	68	36.8%	0	-	-	-	-	-
CCDC73	493860	genome.wustl.edu	37	11	32635434	32635434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008391.2	-1	validated	p.K810N	0.000	189	0%	143	25.2%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
CCDC73	493860	genome.wustl.edu	37	11	32657319	32657319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008391.2	-1	validated	p.E370*	1.000	212	0%	87	34.5%	0	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32676428	32676428	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008391.2	-1	validated	p.E246*	1.000	328	0%	217	24.4%	0	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32720855	32720855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008391.2	-1	validated	p.A111D	1.000	331	0.3%	328	26.8%	0	-	probably_damaging(1)	tolerated(0.47)	deleterious(0.511)	NULL
CCDC73	493860	genome.wustl.edu	37	11	32739659	32739659	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008391.2	-1	validated	p.K57T	1.000	236	0%	153	27.5%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
QSER1	79832	genome.wustl.edu	37	11	32954658	32954658	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001076786.1	+1	provisional	p.P489	0.349	107	0%	78	25.6%	6	16.6%	-	-	-	NULL
HIPK3	10114	genome.wustl.edu	37	11	33308795	33308795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005734.3	+1	validated	p.E279K	1.000	98	0%	80	21.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C11orf41	25758	genome.wustl.edu	37	11	33565125	33565125	+	Silent	SNP	G	G	A	rs189636606	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012194.1	+1	validated	p.S375	0.758	57	0%	40	42.5%	0	-	-	-	-	NULL
FBXO3	26273	genome.wustl.edu	37	11	33770434	33770434	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012175.3	-1	reviewed	p.E313*	1.000	125	0%	61	44.3%	23	8.6%	-	-	-	HMMPfam_DUF525,superfamily_ApaG-like (Pfam 04379)
PDHX	8050	genome.wustl.edu	37	11	35016654	35016654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003477.2	+1	reviewed	p.E481K	1.000	91	0%	38	50%	55	30.9%	benign(0.054)	deleterious(0.01)	neutral(0.409)	HMMPfam_2-oxoacid_dh,superfamily_SSF52777
PAMR1	25891	genome.wustl.edu	37	11	35461197	35461197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015430.2	-1	validated	p.L377I	1.000	118	0%	70	10%	1	0%	possibly_damaging(0.461)	tolerated(0.19)	neutral(0.201)	NULL
PAMR1	25891	genome.wustl.edu	37	11	35473451	35473451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015430.2	-1	validated	p.E286*	0.002	107	0%	60	21.7%	0	-	-	-	-	NULL
RAG2	5897	genome.wustl.edu	37	11	36615256	36615256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000536.3	-1	reviewed	p.L155I	0.376	102	0%	81	38.3%	0	-	benign(0.015)	tolerated(0.26)	neutral(0.035)	HMMPfam_RAG2
LRRC4C	57689	genome.wustl.edu	37	11	40135960	40135960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020929.1	-1	validated	p.R628Q	1.000	137	0%	120	38.3%	7	14.2%	benign(0.091)	tolerated(0.59)	neutral(0.011)	NULL
LOC399881	399881	genome.wustl.edu	37	11	43284436	43284436	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_040375.2	-1	model	NULL	0.998	23	0%	17	41.2%	0	-	-	-	-	-
API5	8539	genome.wustl.edu	37	11	43345117	43345117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142930.1	+1	validated	p.F227L	1.000	70	0%	45	22.2%	67	43.2%	benign(0.002)	tolerated(0.72)	neutral(0.002)	HMMPfam_API5,superfamily_ARM-type_fold
TTC17	55761	genome.wustl.edu	37	11	43425575	43425575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018259.5	+1	validated	p.M454V	1.000	215	0%	90	34.4%	28	39.2%	benign(0.138)	tolerated(0.21)	neutral(0.055)	superfamily_SSF48452
EXT2	2132	genome.wustl.edu	37	11	44129312	44129312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000401.3	+1	reviewed	p.R30I	1.000	175	0%	126	25.4%	68	38.2%	benign(0.033)	deleterious(0)	neutral(0.446)	NULL
TSPAN18	90139	genome.wustl.edu	37	11	44948290	44948290	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130783.4	+1	validated	p.I227	0.782	87	0%	107	39.3%	0	-	-	-	-	HMMPfam_Tetraspannin
SYT13	57586	genome.wustl.edu	37	11	45265785	45265785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020826.2	-1	validated	p.D367N	1.000	95	0%	93	30.1%	0	-	benign(0.058)	tolerated(0.09)	neutral(0.300)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SYT13	57586	genome.wustl.edu	37	11	45275830	45275830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020826.2	-1	validated	p.R179C	0.002	131	0%	139	33.8%	1	0%	benign(0.377)	tolerated(0.1)	neutral(0.407)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CHST1	8534	genome.wustl.edu	37	11	45671749	45671749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003654.4	-1	validated	p.S242L	0.998	12	0%	24	29.2%	48	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
PHF21A	51317	genome.wustl.edu	37	11	45986914	45986914	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101802.1	-1	validated	p.L315	0.956	83	0%	79	38%	10	40%	-	-	-	NULL
DGKZ	8525	genome.wustl.edu	37	11	46395962	46395962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105540.1	+1	reviewed	p.E661D	1.000	76	0%	101	31.7%	34	32.3%	possibly_damaging(0.929)	tolerated(0.09)	deleterious(0.672)	HMMPfam_DAGK_acc,HMMSmart_SM00045
DGKZ	8525	genome.wustl.edu	37	11	46400643	46400643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105540.1	+1	reviewed	p.R1029C	1.000	37	0%	44	40.9%	130	37.6%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CKAP5	9793	genome.wustl.edu	37	11	46771917	46771917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008938.1	-1	validated	p.N1871H	1.000	243	0%	83	27.7%	111	50.4%	benign(0.4)	tolerated(0.17)	neutral(0.188)	NULL
CKAP5	9793	genome.wustl.edu	37	11	46776439	46776439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008938.1	-1	validated	p.S1623L	1.000	153	0%	70	27.1%	106	46.2%	benign(0.114)	deleterious(0.01)	neutral(0.415)	NULL
LRP4	4038	genome.wustl.edu	37	11	46903373	46903373	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002334.3	-1	reviewed	p.I898	1.000	104	0%	66	45.5%	7	71.4%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
DDB2	1643	genome.wustl.edu	37	11	47259476	47259476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000107.2	+1	reviewed	p.T371M	1.000	87	0%	76	32.9%	37	51.3%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	superfamily_WD40 repeat-like
FNBP4	23360	genome.wustl.edu	37	11	47767815	47767815	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015308.2	-1	validated	p.I346M	1.000	242	0%	229	31.9%	15	53.3%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
PTPRJ	5795	genome.wustl.edu	37	11	48142670	48142670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002843.3	+1	reviewed	p.K156N	0.000	113	0%	72	30.6%	7	28.5%	benign(0.025)	tolerated(0.46)	neutral(0.013)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
OR4X2	119764	genome.wustl.edu	37	11	48267433	48267433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004727.1	+1	provisional	p.D260Y	0.932	99	0%	40	12.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C3	256144	genome.wustl.edu	37	11	48347436	48347436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004702.1	+1	provisional	p.R315I	0.993	175	0%	75	10.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
OR4C45	403257	genome.wustl.edu	37	11	48367084	48367084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000415304	-1	known	p.F251L	1.000	131	0%	107	22.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4A47	403253	genome.wustl.edu	37	11	48510533	48510533	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005512.2	+1	validated	p.G63	0.000	160	0%	64	29.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC283116	283116	genome.wustl.edu	37	11	49055722	49055722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_208043.4	+1	model	p.A178T	0.000	111	0%	99	29.3%	0	-	possibly_damaging(0.864)	tolerated(0.13)	deleterious(0.587)	NULL
ENSG00000123447	0	genome.wustl.edu	37	11	49437287	49437287	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000243152	-1	known	p.R7*	1.000	93	0%	74	33.8%	0	-	-	-	-	superfamily_Di-copper_centre
ENSG00000205035	0	genome.wustl.edu	37	11	49598368	49598368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000357667	+1	known	p.V190I	1.000	64	0%	33	30.3%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
OR4A5	81318	genome.wustl.edu	37	11	51412162	51412162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005272.3	-1	validated	p.K78N	0.020	109	0%	44	45.5%	0	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C46	119749	genome.wustl.edu	37	11	51515471	51515471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004703.1	+1	provisional	p.L64F	0.276	298	0%	171	33.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C46	119749	genome.wustl.edu	37	11	51515914	51515914	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004703.1	+1	provisional	p.L211	0.000	164	0%	71	31%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRIM48	79097	genome.wustl.edu	37	11	55032653	55032653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024114.3	+1	validated	p.M108L	0.798	122	0%	36	75%	0	-	benign(0)	tolerated(1)	-	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_RING/U-box
OR4A16	81327	genome.wustl.edu	37	11	55110733	55110733	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005274.1	+1	provisional	p.P19	0.000	79	0%	32	28.1%	0	-	-	-	-	superfamily_SSF81321
OR4A15	81328	genome.wustl.edu	37	11	55135707	55135707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005275.1	+1	provisional	p.E116D	0.074	162	0%	61	23%	0	-	benign(0.045)	tolerated(0.19)	neutral(0.052)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C15	81309	genome.wustl.edu	37	11	55322576	55322576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001920.1	+1	provisional	p.S265Y	0.023	217	0%	78	29.5%	0	-	possibly_damaging(0.877)	tolerated(0.11)	deleterious(0.613)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4C16	219428	genome.wustl.edu	37	11	55339875	55339875	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004701.2	+1	validated	p.S91Y	0.771	203	0%	135	31.9%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C16	219428	genome.wustl.edu	37	11	55340320	55340320	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004701.2	+1	validated	p.V239	0.040	145	0%	62	32.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4C11	219429	genome.wustl.edu	37	11	55371523	55371523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004700.1	-1	provisional	p.E109D	0.664	73	0%	48	14.6%	0	-	benign(0.09)	tolerated(0.09)	neutral(0.303)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR4S2	219431	genome.wustl.edu	37	11	55418426	55418426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004059.2	+1	validated	p.S16Y	0.867	162	0%	101	28.7%	0	-	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	superfamily_Family A G protein-coupled receptor-like
OR4S2	219431	genome.wustl.edu	37	11	55419242	55419242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004059.2	+1	validated	p.R288I	1.000	91	0%	52	44.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
OR4C6	219432	genome.wustl.edu	37	11	55433300	55433300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004704.1	+1	provisional	p.L220I	0.233	58	0%	59	40.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5D13	390142	genome.wustl.edu	37	11	55541250	55541250	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001967.1	+1	provisional	p.E113*	0.416	256	0%	170	30.6%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681278	55681278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001960.1	-1	provisional	p.R261W	0.000	107	0%	86	27.9%	0	-	possibly_damaging(0.603)	deleterious(0.01)	deleterious(0.615)	HMMPfam_7tm_1,superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681509	55681509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001960.1	-1	provisional	p.L184I	0.510	41	0%	21	23.8%	0	-	benign(0.07)	tolerated(0.15)	neutral(0.246)	HMMPfam_7tm_1,superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681795	55681795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001960.1	-1	provisional	p.K88N	0.000	108	0%	75	29.3%	0	-	benign(0.02)	tolerated(0.15)	neutral(0.242)	HMMPfam_7tm_1,superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681993	55681993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001960.1	-1	provisional	p.E22D	0.000	54	0%	35	40%	0	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703065	55703065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006637.1	-1	reviewed	p.N271S	0.014	127	0%	49	40.8%	0	-	benign(0.428)	deleterious(0.04)	deleterious(0.488)	HMMPfam_7tm_1,superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703831	55703831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006637.1	-1	reviewed	p.L16I	0.153	38	0%	14	28.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF81321
OR5F1	338674	genome.wustl.edu	37	11	55761919	55761919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003697.1	-1	provisional	p.F61L	0.951	56	0%	25	48%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AS1	219447	genome.wustl.edu	37	11	55798030	55798030	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001921.1	+1	provisional	p.I46L	0.744	98	0%	68	39.7%	0	-	benign(0.043)	deleterious(0.01)	neutral(0.408)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AS1	219447	genome.wustl.edu	37	11	55798754	55798754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001921.1	+1	provisional	p.P287L	0.945	75	0%	63	28.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR8J3	81168	genome.wustl.edu	37	11	55904298	55904298	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004064.1	-1	provisional	p.V299	0.007	128	0%	166	28.9%	0	-	-	-	-	superfamily_SSF81321
OR8J3	81168	genome.wustl.edu	37	11	55904546	55904546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004064.1	-1	provisional	p.S217P	0.473	164	0%	249	30.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
OR8K5	219453	genome.wustl.edu	37	11	55927463	55927463	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004058.2	-1	validated	p.E111*	0.408	82	0%	61	32.8%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR8K5	219453	genome.wustl.edu	37	11	55927573	55927573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004058.2	-1	validated	p.S74Y	0.000	103	0%	62	37.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
OR5J2	282775	genome.wustl.edu	37	11	55944611	55944611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005492.1	+1	provisional	p.A173V	0.000	112	0%	54	11.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5T2	219464	genome.wustl.edu	37	11	55999818	55999818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004746.1	-1	provisional	p.A282S	0.006	131	0%	68	19.1%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5T2	219464	genome.wustl.edu	37	11	56000295	56000295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004746.1	-1	provisional	p.D123Y	0.000	125	0%	99	63.6%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T3	390154	genome.wustl.edu	37	11	56020473	56020473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004747.1	+1	provisional	p.K266N	0.987	171	0%	84	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043798	56043798	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004745.1	+1	provisional	p.I228	0.013	233	0%	145	11%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8H1	219469	genome.wustl.edu	37	11	56057748	56057748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005199.1	-1	provisional	p.S264Y	0.000	175	0%	126	32.5%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8K3	219473	genome.wustl.edu	37	11	56086251	56086251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005202.1	+1	provisional	p.L157I	0.002	118	0%	65	27.7%	0	-	possibly_damaging(0.951)	tolerated(0.16)	neutral(0.454)	HMMPfam_7tm_1,superfamily_SSF81321
OR8K3	219473	genome.wustl.edu	37	11	56086548	56086548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005202.1	+1	provisional	p.F256V	0.759	151	0%	71	40.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_7tm_1,superfamily_SSF81321
OR8J1	219477	genome.wustl.edu	37	11	56128252	56128252	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005205.1	+1	provisional	p.F177C	0.982	281	0%	193	14.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8J1	219477	genome.wustl.edu	37	11	56128327	56128327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005205.1	+1	provisional	p.S202Y	0.542	361	0%	208	27.9%	0	-	possibly_damaging(0.515)	tolerated(0.1)	neutral(0.460)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8U1	219417	genome.wustl.edu	37	11	56143312	56143312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005204.1	+1	provisional	p.F71L	0.001	284	0%	151	23.2%	0	-	benign(0.072)	tolerated(1)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
OR5M11	219487	genome.wustl.edu	37	11	56310488	56310488	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005245.1	-1	provisional	p.S82	0.495	106	0%	91	35.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5AP2	338675	genome.wustl.edu	37	11	56409482	56409482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002925.1	-1	provisional	p.R145I	0.002	81	0%	87	25.3%	0	-	possibly_damaging(0.628)	deleterious(0.02)	deleterious(0.602)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5AP2	338675	genome.wustl.edu	37	11	56409877	56409877	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002925.1	-1	provisional	p.T13	0.999	98	0%	118	28.8%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR9G1	390174	genome.wustl.edu	37	11	56467954	56467954	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005213.1	+1	provisional	p.L31	0.329	272	0%	179	21.2%	0	-	-	-	-	superfamily_SSF81321
OR9G1	390174	genome.wustl.edu	37	11	56468664	56468664	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005213.1	+1	provisional	p.F267	0.000	245	0%	151	18.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56510357	56510357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005284.1	-1	provisional	p.D311Y	0.897	275	0%	219	26.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56510880	56510880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005284.1	-1	provisional	p.D136E	1.000	66	0%	55	27.3%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR9G4	283189	genome.wustl.edu	37	11	56511230	56511230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005284.1	-1	provisional	p.N20H	0.918	76	0%	47	46.8%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_SSF81321
OR5AK2	390181	genome.wustl.edu	37	11	56756655	56756655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005323.1	+1	provisional	p.K89N	0.000	182	0%	91	27.5%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
APLNR	187	genome.wustl.edu	37	11	57004366	57004366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005161.4	-1	reviewed	p.V38A	1.000	17	0%	28	39.3%	1	0%	possibly_damaging(0.866)	deleterious(0)	deleterious(0.780)	superfamily_SSF81321
SSRP1	6749	genome.wustl.edu	37	11	57095221	57095221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003146.2	-1	reviewed	p.E583K	1.000	97	0%	168	30.4%	274	48.5%	probably_damaging(0.981)	tolerated(0.16)	deleterious(0.485)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
PRG3	10394	genome.wustl.edu	37	11	57146272	57146272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006093.3	-1	validated	p.R130I	0.008	68	0%	121	33.9%	0	-	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
SLC43A1	8501	genome.wustl.edu	37	11	57263539	57263539	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003627.4	-1	provisional	p.I219	0.000	68	0%	120	28.3%	36	19.4%	-	-	-	superfamily_MFS general substrate transporter
UBE2L6	9246	genome.wustl.edu	37	11	57327885	57327885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004223.3	-1	reviewed	p.K16N	0.000	62	0%	77	27.3%	469	40.7%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
SERPING1	710	genome.wustl.edu	37	11	57374022	57374022	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000062.2	+1	reviewed	e5+2	0.922	170	0.6%	176	30.7%	0	-	-	-	-	-
ZDHHC5	25921	genome.wustl.edu	37	11	57463486	57463486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015457.2	+1	validated	p.R327Q	0.998	98	0%	71	29.6%	108	35.1%	probably_damaging(0.993)	tolerated(0.22)	deleterious(0.492)	NULL
TMX2	51075	genome.wustl.edu	37	11	57480269	57480269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015959.2	+1	validated	p.D60G	1.000	54	0%	97	35.1%	122	47.5%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	NULL
CTNND1	1500	genome.wustl.edu	37	11	57561520	57561520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085458.1	+1	validated	p.Q78H	1.000	162	0%	198	32.3%	23	17.3%	possibly_damaging(0.808)	deleterious(0.02)	deleterious(0.687)	NULL
OR9Q1	219956	genome.wustl.edu	37	11	57947502	57947502	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005212.3	+1	validated	p.E196*	0.666	89	0%	63	20.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5B2	390190	genome.wustl.edu	37	11	58189810	58189810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005566.2	-1	validated	p.L309I	0.000	69	0%	23	43.5%	0	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
LPXN	9404	genome.wustl.edu	37	11	58317559	58317559	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143995.1	-1	reviewed	p.E188*	0.995	48	0%	21	28.6%	22	0%	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
CNTF	1270	genome.wustl.edu	37	11	58391921	58391921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000614.3	+1	reviewed	p.R177C	0.949	74	0%	59	27.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CNTF,superfamily_4-helical cytokines
GLYATL1	92292	genome.wustl.edu	37	11	58722290	58722290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080661.2	+1	provisional	p.F109L	0.000	79	0%	44	45.5%	0	-	possibly_damaging(0.946)	deleterious(0.02)	deleterious(0.773)	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl_CoA_acyltransferase
GLYATL1	92292	genome.wustl.edu	37	11	58722719	58722719	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080661.2	+1	provisional	p.S159	0.000	108	1.9%	87	27.6%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl_CoA_acyltransferase
FAM111B	374393	genome.wustl.edu	37	11	58893641	58893641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198947.3	+1	validated	p.L691I	0.001	141	0%	46	32.6%	5	20%	possibly_damaging(0.945)	tolerated(0.06)	deleterious(0.712)	superfamily_Trypsin-like serine proteases
FAM111A	63901	genome.wustl.edu	37	11	58919526	58919526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142519.1	+1	validated	p.R129C	0.000	88	0%	94	30.9%	30	43.3%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
FAM111A	63901	genome.wustl.edu	37	11	58919582	58919582	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142519.1	+1	validated	p.F147	0.995	95	0%	127	36.2%	26	26.9%	-	-	-	NULL
ENSG00000235678	0	genome.wustl.edu	37	11	59077748	59077748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000417462	-1	known	p.F37L	0.157	32	0%	12	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5AN1	390195	genome.wustl.edu	37	11	59132438	59132438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004729.1	+1	provisional	p.F169L	1.000	173	0%	96	22.9%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AN1	390195	genome.wustl.edu	37	11	59132513	59132513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004729.1	+1	provisional	p.F194L	0.014	176	0%	101	22.8%	0	-	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMPfam_7tm_1,superfamily_SSF81321
OR5A2	219981	genome.wustl.edu	37	11	59189494	59189494	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001954.1	-1	provisional	p.G311	0.000	66	0%	41	36.6%	0	-	-	-	-	NULL
OR4D6	219983	genome.wustl.edu	37	11	59224570	59224570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004708.1	+1	provisional	p.V46G	1.000	294	0%	171	29.8%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D6	219983	genome.wustl.edu	37	11	59225075	59225075	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004708.1	+1	provisional	p.L214	0.208	182	0.5%	98	23.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4D10	390197	genome.wustl.edu	37	11	59244942	59244942	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004705.1	+1	provisional	p.F14V	0.577	109	0%	56	35.7%	0	-	benign(0.008)	deleterious(0)	neutral(0.445)	superfamily_Family A G protein-coupled receptor-like
OR4D10	390197	genome.wustl.edu	37	11	59245243	59245243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004705.1	+1	provisional	p.S114Y	0.004	157	0%	59	27.1%	0	-	benign(0.283)	deleterious(0)	deleterious(0.531)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR4D10	390197	genome.wustl.edu	37	11	59245634	59245634	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004705.1	+1	provisional	p.I244	0.954	174	0%	103	16.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PATL1	219988	genome.wustl.edu	37	11	59405869	59405869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152716.2	-1	validated	p.I769M	0.990	213	0%	201	13.4%	63	15.8%	benign(0.028)	tolerated(0.61)	neutral(0.005)	NULL
PATL1	219988	genome.wustl.edu	37	11	59426838	59426838	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152716.2	-1	validated	p.L78V	0.998	247	0%	276	35.1%	29	68.9%	possibly_damaging(0.892)	tolerated(0.09)	deleterious(0.648)	NULL
OR10V1	390201	genome.wustl.edu	37	11	59480469	59480469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005324.1	-1	provisional	p.P284S	0.998	105	0%	111	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR10V1	390201	genome.wustl.edu	37	11	59480513	59480513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005324.1	-1	provisional	p.P269H	1.000	92	0%	73	42.5%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_7tm_1,superfamily_SSF81321
OR10V1	390201	genome.wustl.edu	37	11	59480713	59480713	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005324.1	-1	provisional	p.I202	0.854	38	0%	31	19.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
STX3	6809	genome.wustl.edu	37	11	59560949	59560949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004177.4	+1	reviewed	p.D213N	1.000	61	0%	51	29.4%	47	38.2%	benign(0.384)	tolerated(0.08)	neutral(0.422)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
TCN1	6947	genome.wustl.edu	37	11	59622291	59622291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001062.3	-1	reviewed	p.A319T	0.000	88	0%	38	31.6%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Cobalamin_bind
TCN1	6947	genome.wustl.edu	37	11	59623359	59623359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001062.3	-1	reviewed	p.S307Y	0.033	148	0%	68	25%	0	-	possibly_damaging(0.745)	tolerated(0.07)	deleterious(0.593)	HMMPfam_Cobalamin_bind
TCN1	6947	genome.wustl.edu	37	11	59623526	59623526	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001062.3	-1	reviewed	p.L251	0.917	134	0%	57	26.3%	0	-	-	-	-	HMMPfam_Cobalamin_bind
PLAC1L	219990	genome.wustl.edu	37	11	59814451	59814451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173801.3	+1	provisional	p.N128H	0.000	195	0%	97	43.3%	0	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60170429	60170429	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032597.3	+1	validated	p.A121	0.000	248	0%	89	28.1%	0	-	-	-	-	HMMPfam_CD20
MS4A14	84689	genome.wustl.edu	37	11	60183712	60183712	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032597.3	+1	validated	p.I424S	0.000	76	0%	77	24.7%	0	-	benign(0.002)	tolerated(0.79)	neutral(0.001)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60184138	60184138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032597.3	+1	validated	p.A566V	0.000	82	0%	61	27.9%	0	-	probably_damaging(1)	tolerated(0.65)	deleterious(0.503)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60184302	60184302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032597.3	+1	validated	p.F621I	0.000	85	0%	63	27%	2	0%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
MS4A12	54860	genome.wustl.edu	37	11	60271208	60271208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017716.2	+1	reviewed	p.S169Y	0.023	158	0%	235	12.8%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMPfam_CD20
ZP1	22917	genome.wustl.edu	37	11	60638458	60638458	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207341.2	+1	validated	p.Y285	0.993	94	0%	103	26.2%	0	-	-	-	-	superfamily_P_trefoil,HMMPfam_Zona_pellucida,HMMSmart_ZP
ENSG00000251217	0	genome.wustl.edu	37	11	60786804	60786804	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000505761	-1	known	NULL	0.000	31	0%	46	30.4%	24	0%	-	-	-	-
CD5	921	genome.wustl.edu	37	11	60885914	60885914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014207.3	+1	validated	p.R121K	0.000	85	0%	118	31.4%	8	0%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
VWCE	220001	genome.wustl.edu	37	11	61026455	61026455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152718.2	-1	validated	p.A854T	0.000	65	0%	62	32.3%	0	-	benign(0.03)	tolerated(0.43)	neutral(0.015)	NULL
TMEM138	51524	genome.wustl.edu	37	11	61135435	61135435	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016464.4	+1	validated	p.D114A	0.994	136	0%	139	24.5%	43	46.5%	benign(0.11)	tolerated(0.32)	neutral(0.033)	NULL
PPP1R32	220004	genome.wustl.edu	37	11	61257332	61257332	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145017.2	+1	validated	p.G374	0.994	30	0%	29	17.2%	9	44.4%	-	-	-	NULL
DAGLA	747	genome.wustl.edu	37	11	61508004	61508004	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006133.1	+1	validated	p.I641	1.000	61	0%	101	28.7%	5	40%	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62285769	62285769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001620.1	-1	validated	p.L5374M	1.000	48	0%	44	22.7%	131	34.3%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
ROM1	6094	genome.wustl.edu	37	11	62382204	62382204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000327.3	+1	reviewed	p.D317Y	1.000	95	0%	159	35.2%	3	0%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
GNG3	2785	genome.wustl.edu	37	11	62476260	62476260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012202.3	+1	validated	p.F70L	1.000	70	0%	82	31.7%	0	-	benign(0.007)	tolerated(0.78)	neutral(0.001)	HMMSmart_SM00224
HNRNPUL2	221092	genome.wustl.edu	37	11	62489351	62489351	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079559.1	-1	provisional	p.E475*	1.000	190	0%	259	36.7%	106	7.5%	-	-	-	superfamily_SSF52540
HNRNPUL2	221092	genome.wustl.edu	37	11	62490172	62490172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079559.1	-1	provisional	p.F332L	0.997	199	0%	316	33.2%	97	70.1%	benign(0.006)	tolerated(0.33)	neutral(0.024)	HMMPfam_SPRY,HMMSmart_SPRY
SLC22A6	9356	genome.wustl.edu	37	11	62747357	62747357	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004790.3	-1	reviewed	p.I367	1.000	34	0%	43	51.2%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A25	387601	genome.wustl.edu	37	11	62948195	62948195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199352.3	-1	validated	p.S336Y	0.002	189	0%	54	35.2%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A25	387601	genome.wustl.edu	37	11	62996821	62996821	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199352.3	-1	validated	p.N102Y	0.224	145	0%	49	26.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC22A25	387601	genome.wustl.edu	37	11	62996888	62996888	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199352.3	-1	validated	p.F79	0.505	157	0%	57	28.1%	0	-	-	-	-	NULL
SLC22A9	114571	genome.wustl.edu	37	11	63176200	63176200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080866.2	+1	validated	p.A484T	0.881	171	0%	73	34.2%	0	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
PLCB3	5331	genome.wustl.edu	37	11	64031234	64031234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000932.2	+1	reviewed	p.E843K	0.998	40	0%	53	35.8%	51	47%	benign(0.085)	tolerated(0.05)	neutral(0.351)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SLC22A11	55867	genome.wustl.edu	37	11	64332703	64332703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018484.2	+1	reviewed	p.S318P	0.000	60	0%	124	33.1%	2	50%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A12	116085	genome.wustl.edu	37	11	64360906	64360906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144585.2	+1	reviewed	p.S179N	0.890	78	0%	112	33.9%	0	-	benign(0.005)	tolerated(0.17)	neutral(0.059)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RASGRP2	10235	genome.wustl.edu	37	11	64503026	64503026	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098670.1	-1	reviewed	p.E428	1.000	73	0%	82	37.8%	6	0%	-	-	-	NULL
PYGM	5837	genome.wustl.edu	37	11	64519102	64519102	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005609.2	-1	reviewed	p.F598L	0.021	96	0%	175	33.1%	1	100%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_Phosphorylase,superfamily_SSF53756
MAP4K2	5871	genome.wustl.edu	37	11	64559399	64559399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004579.2	-1	reviewed	p.D692N	0.605	9	0.000	17	0.529	43	48.8%	benign(0.037)	tolerated(0.53)	neutral(0.009)	HMMPfam_CNH,HMMSmart_CNH
MEN1	4221	genome.wustl.edu	37	11	64577320	64577320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000244.3	-1	reviewed	p.A88T	0.999	71	0%	128	35.2%	69	49.2%	probably_damaging(0.959)	tolerated(0.05)	deleterious(0.748)	HMMPfam_Menin
GPHA2	170589	genome.wustl.edu	37	11	64702629	64702629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130769.3	-1	validated	p.R41Q	0.937	30	0%	39	28.2%	0	-	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	NULL
C11orf2	738	genome.wustl.edu	37	11	64877284	64877284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013265.2	+1	provisional	p.Q589H	1.000	35	0%	57	36.8%	176	41.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC22A20	440044	genome.wustl.edu	37	11	65009546	65009546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000454680	+1	known	p.E553*	0.995	59	0%	124	38.7%	2	100%	-	-	-	NULL
SCYL1	57410	genome.wustl.edu	37	11	65304101	65304101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020680.3	+1	reviewed	p.A566T	0.889	70	0%	147	27.2%	138	36.9%	benign(0.356)	-	-	superfamily_ARM repeat
EHBP1L1	254102	genome.wustl.edu	37	11	65351200	65351200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099409.1	+1	validated	p.E1019D	0.999	12	0%	15	33.3%	18	5.5%	possibly_damaging(0.94)	tolerated(0.1)	deleterious(0.671)	NULL
PCNXL3	399909	genome.wustl.edu	37	11	65392027	65392027	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032223.2	+1	validated	p.I934	0.990	61	0%	101	29.7%	49	51%	-	-	-	NULL
SART1	9092	genome.wustl.edu	37	11	65731592	65731592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005146.4	+1	reviewed	p.E121K	0.999	112	0%	236	36.4%	37	48.6%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_SART-1
SART1	9092	genome.wustl.edu	37	11	65744203	65744203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005146.4	+1	reviewed	p.T608M	0.980	24	0%	50	50%	134	29.1%	benign(0.05)	tolerated(0.18)	neutral(0.059)	HMMPfam_SART-1
CST6	1474	genome.wustl.edu	37	11	65780850	65780850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001323.2	+1	reviewed	p.K143N	0.013	122	0%	220	27.7%	3	0%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	HMMSmart_CY,superfamily_SSF54403
BRMS1	25855	genome.wustl.edu	37	11	66105719	66105719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024957.1	-1	reviewed	p.S243L	0.986	135	0%	203	31.5%	89	38.2%	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
NPAS4	266743	genome.wustl.edu	37	11	66190307	66190307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178864.3	+1	validated	p.R198I	1.000	79	0%	134	32.1%	0	-	probably_damaging(0.962)	tolerated(0.31)	neutral(0.432)	NULL
RBM14	10432	genome.wustl.edu	37	11	66391769	66391769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006328.3	+1	validated	p.R141H	1.000	33	0%	54	33.3%	72	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RBM4	5936	genome.wustl.edu	37	11	66411459	66411459	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002896.2	+1	validated	p.P317	0.998	69	0%	29	17.2%	169	48.5%	-	-	-	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66455100	66455100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006946.2	-1	reviewed	p.E2174K	0.041	44	0%	56	30.4%	4	50%	benign(0.256)	tolerated(0.64)	neutral(0.029)	HMMSmart_SM00150
SPTBN2	6712	genome.wustl.edu	37	11	66455516	66455516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006946.2	-1	reviewed	p.P2137T	0.315	224	0.4%	356	28.9%	14	50%	possibly_damaging(0.484)	tolerated(0.24)	neutral(0.198)	HMMSmart_SM00150
SPTBN2	6712	genome.wustl.edu	37	11	66456165	66456165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006946.2	-1	reviewed	p.A2064T	0.971	32	0%	66	24.2%	5	40%	benign(0.009)	tolerated(0.38)	neutral(0.018)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66478398	66478398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006946.2	-1	reviewed	p.R292I	1.000	83	0%	148	29.7%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRFN4	78999	genome.wustl.edu	37	11	66627249	66627249	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024036.4	+1	validated	p.F497	1.000	24	0%	54	33.3%	78	48.7%	-	-	-	NULL
ADRBK1	156	genome.wustl.edu	37	11	67049958	67049958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001619.3	+1	reviewed	p.D369N	1.000	92	0%	139	33.8%	131	29.7%	benign(0.167)	deleterious(0.03)	neutral(0.380)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PITPNM1	9600	genome.wustl.edu	37	11	67267198	67267198	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004910.2	-1	validated	p.T389	0.000	70	1.4%	127	31.5%	24	45.8%	-	-	-	NULL
SUV420H1	51111	genome.wustl.edu	37	11	67939024	67939024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017635.3	-1	reviewed	p.A269V	1.000	161	0.6%	52	38.5%	67	35.8%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
SUV420H1	51111	genome.wustl.edu	37	11	67939154	67939154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017635.3	-1	reviewed	p.L226V	1.000	187	0%	76	22.4%	58	55.1%	benign(0.005)	tolerated(0.48)	neutral(0.011)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
GAL	51083	genome.wustl.edu	37	11	68458443	68458443	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015973.3	+1	validated	p.I120	0.000	76	0%	101	36.6%	0	-	-	-	-	HMMSmart_Galanin,HMMPfam_GMAP
CPT1A	1374	genome.wustl.edu	37	11	68579970	68579970	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001876.3	-1	reviewed	p.T72	0.054	96	0%	136	34.6%	47	36.1%	-	-	-	NULL
IGHMBP2	3508	genome.wustl.edu	37	11	68707088	68707088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002180.2	+1	reviewed	p.K957N	0.998	32	0%	37	37.8%	14	71.4%	probably_damaging(0.97)	tolerated(0.08)	deleterious(0.712)	NULL
ANO1	55107	genome.wustl.edu	37	11	70009453	70009453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000316296	+1	known	p.E595K	0.001	187	0%	198	35.9%	3	33.3%	benign(0.29)	tolerated(0.11)	neutral(0.361)	NULL
KRTAP5-8	57830	genome.wustl.edu	37	11	71249558	71249558	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021046.2	+1	validated	p.C153S	0.952	104	1.9%	131	17.6%	0	-	unknown(0)	deleterious(0.05)	-	PatternScan_VWFC_1
OR7E87P	8586	genome.wustl.edu	37	11	71331702	71331702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000454336	+1	known	p.S163N	0.812	203	0%	253	33.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC100131539	100131539	genome.wustl.edu	37	11	71528140	71528140	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001723234.2	-1	model	p.E107	0.014	234	0%	339	22.4%	0	-	-	-	-	NULL
PDE2A	5138	genome.wustl.edu	37	11	72290019	72290019	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002599.3	-1	validated	p.R797S	0.995	223	0%	275	13.1%	1	0%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE2A	5138	genome.wustl.edu	37	11	72291959	72291959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002599.3	-1	validated	p.G702C	1.000	117	0%	159	35.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
ARHGEF17	9828	genome.wustl.edu	37	11	73022639	73022639	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014786.3	+1	validated	p.E986*	0.994	41	0%	38	34.2%	38	26.3%	-	-	-	NULL
FAM168A	23201	genome.wustl.edu	37	11	73118642	73118642	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015159.1	-1	predicted	p.P214	0.976	123	0%	139	25.9%	49	34.6%	-	-	-	NULL
PAAF1	80227	genome.wustl.edu	37	11	73610256	73610256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025155.1	+1	provisional	p.M116I	1.000	101	0%	226	27.4%	27	37%	benign(0.15)	tolerated(0.27)	neutral(0.046)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
C2CD3	26005	genome.wustl.edu	37	11	73803515	73803515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015531.4	-1	validated	p.L1155I	1.000	191	0%	121	14%	6	16.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
C2CD3	26005	genome.wustl.edu	37	11	73844488	73844488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015531.4	-1	validated	p.S357Y	0.000	151	0%	252	30.2%	9	22.2%	benign(0.002)	tolerated(0.36)	neutral(0.020)	NULL
C2CD3	26005	genome.wustl.edu	37	11	73850805	73850805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015531.4	-1	validated	p.M184I	0.856	170	0%	131	26.7%	4	0%	benign(0.004)	tolerated(0.72)	neutral(0.002)	NULL
PGM2L1	283209	genome.wustl.edu	37	11	74056611	74056611	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173582.3	-1	validated	p.S374*	0.787	204	0%	183	31.1%	1	0%	-	-	-	superfamily_Phosphoglucomutase first 3 domains
PGM2L1	283209	genome.wustl.edu	37	11	74082761	74082761	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173582.3	-1	validated	p.S127	1.000	131	0%	105	24.8%	6	50%	-	-	-	HMMPfam_PGM_PMM_I,superfamily_Phosphoglucomutase first 3 domains
XRRA1	143570	genome.wustl.edu	37	11	74562192	74562192	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182969.1	-1	validated	p.R433*	1.000	99	0%	79	31.6%	10	0%	-	-	-	superfamily_L domain-like
SLCO2B1	11309	genome.wustl.edu	37	11	74876897	74876897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007256.3	+1	validated	p.M117I	0.986	161	0%	133	37.6%	13	0%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_OATP,superfamily_MFS general substrate transporter
UVRAG	7405	genome.wustl.edu	37	11	75563035	75563035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003369.3	+1	reviewed	p.K75N	0.970	116	0%	57	28.1%	2	0%	benign(0.253)	tolerated(0.26)	neutral(0.060)	HMMSmart_C2,superfamily_C2_CaLB
WNT11	7481	genome.wustl.edu	37	11	75898246	75898246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004626.2	-1	reviewed	p.D310N	1.000	96	0%	176	26.1%	80	52.5%	benign(0.079)	tolerated(0.28)	neutral(0.037)	HMMPfam_wnt,HMMSmart_WNT1
WNT11	7481	genome.wustl.edu	37	11	75902789	75902789	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004626.2	-1	reviewed	p.L237V	1.000	25	0%	59	27.1%	43	34.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_wnt,HMMSmart_WNT1
PRKRIR	5612	genome.wustl.edu	37	11	76063704	76063704	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004705.2	-1	provisional	p.E164*	1.000	131	0%	62	30.6%	17	76.4%	-	-	-	NULL
LRRC32	2615	genome.wustl.edu	37	11	76371658	76371658	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128922.1	-1	reviewed	p.I327L	1.000	35	0%	29	27.6%	5	0%	benign(0.12)	tolerated(1)	neutral(0.009)	HMMPfam_LRR_1,superfamily_SSF52058
CAPN5	726	genome.wustl.edu	37	11	76830085	76830085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004055.4	+1	reviewed	p.E393K	1.000	60	0%	100	34%	15	53.3%	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
AQP11	282679	genome.wustl.edu	37	11	77301191	77301191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173039.1	+1	provisional	p.L52I	0.528	13	0%	28	28.6%	17	52.9%	benign(0.001)	tolerated(0.78)	neutral(0.001)	superfamily_MIP
RSF1	51773	genome.wustl.edu	37	11	77386155	77386155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016578.3	-1	validated	p.R1163Q	1.000	222	0%	155	30.3%	14	35.7%	probably_damaging(0.974)	tolerated(0.07)	deleterious(0.735)	NULL
GAB2	9846	genome.wustl.edu	37	11	77937755	77937755	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080491.2	-1	reviewed	p.L321	1.000	115	0%	96	32.3%	4	0%	-	-	-	NULL
ODZ4	26011	genome.wustl.edu	37	11	78443550	78443550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098816.2	-1	validated	p.E983D	1.000	126	0%	71	32.4%	0	-	benign(0.045)	tolerated(0.25)	neutral(0.040)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78780876	78780876	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098816.2	-1	validated	p.S38	1.000	50	0%	75	30.7%	0	-	-	-	-	HMMPfam_Ten_N
C11orf82	220042	genome.wustl.edu	37	11	82643743	82643743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145018.3	+1	validated	p.H455N	0.000	41	0%	24	33.3%	10	80%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
DLG2	1740	genome.wustl.edu	37	11	83243758	83243758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142699.1	-1	reviewed	p.S729L	1.000	241	0%	121	29.8%	0	-	benign(0.102)	deleterious(0.05)	neutral(0.353)	superfamily_SH3-domain
DLG2	1740	genome.wustl.edu	37	11	84822753	84822753	+	Missense_Mutation	SNP	C	C	A	rs1452927		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142699.1	-1	reviewed	p.Q103H	1.000	145	0%	35	31.4%	0	-	benign(0)	-	-	NULL
CCDC89	220388	genome.wustl.edu	37	11	85396983	85396983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152723.1	-1	provisional	p.A64V	0.963	68	0%	83	33.7%	1	0%	probably_damaging(0.983)	tolerated(0.1)	deleterious(0.716)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85418526	85418526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206927.2	-1	reviewed	p.K1021N	1.000	362	0%	200	34.5%	1	0%	benign(0.344)	deleterious(0)	deleterious(0.553)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SYTL2	54843	genome.wustl.edu	37	11	85429857	85429857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206927.2	-1	reviewed	p.E853*	1.000	161	0%	77	59.7%	0	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85435491	85435491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206927.2	-1	reviewed	p.K670T	0.000	134	0%	77	14.3%	1	0%	benign(0.135)	deleterious(0)	neutral(0.456)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85435879	85435879	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206927.2	-1	reviewed	p.E541*	0.864	237	0%	106	30.2%	0	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85437050	85437050	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206927.2	-1	reviewed	p.S150	0.008	176	0.6%	149	26.8%	0	-	-	-	-	NULL
SYTL2	54843	genome.wustl.edu	37	11	85438966	85438966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032943.3	-1	reviewed	p.G478S	0.067	49	0%	53	37.7%	1	0%	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
CCDC83	220047	genome.wustl.edu	37	11	85606409	85606409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173556.3	+1	provisional	p.K195N	1.000	50	0%	25	40%	0	-	probably_damaging(0.996)	tolerated(0.37)	deleterious(0.481)	NULL
PICALM	8301	genome.wustl.edu	37	11	85723423	85723423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007166.2	-1	validated	p.E187*	1.000	208	0%	104	27.9%	24	4.1%	-	-	-	HMMPfam_ANTH,superfamily_GAT-like domain
EED	8726	genome.wustl.edu	37	11	85977204	85977204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003797.2	+1	reviewed	p.R269I	1.000	80	0%	89	27%	18	33.3%	benign(0.002)	tolerated(0.12)	neutral(0.261)	superfamily_WD40 repeat-like
ME3	10873	genome.wustl.edu	37	11	86152479	86152479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014811.1	-1	reviewed	p.L553I	1.000	172	0%	139	27.3%	28	39.2%	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
PRSS23	11098	genome.wustl.edu	37	11	86518836	86518836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007173.4	+1	validated	p.P51T	1.000	150	0%	122	26.2%	47	12.7%	possibly_damaging(0.638)	tolerated(0.15)	neutral(0.465)	NULL
PRSS23	11098	genome.wustl.edu	37	11	86519634	86519634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007173.4	+1	validated	p.G317R	1.000	122	0%	111	31.5%	61	21.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Trypsin-like serine proteases
RAB38	23682	genome.wustl.edu	37	11	87883056	87883056	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022337.1	-1	provisional	p.F90	0.738	106	0%	56	26.8%	12	50%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
CTSC	1075	genome.wustl.edu	37	11	88027375	88027375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001814.4	-1	reviewed	p.F397L	1.000	129	0%	48	29.2%	418	21.5%	benign(0.013)	deleterious(0.03)	neutral(0.365)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
GRM5	2915	genome.wustl.edu	37	11	88780534	88780534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143831.2	-1	reviewed	p.Q169H	1.000	62	0%	40	25%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_Periplasmic binding protein-like I
GRM5	2915	genome.wustl.edu	37	11	88780778	88780778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143831.2	-1	reviewed	p.N88S	1.000	143	0%	79	11.4%	1	100%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
NOX4	50507	genome.wustl.edu	37	11	89073328	89073328	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016931.3	-1	reviewed	p.K450I	0.188	147	0%	41	34.1%	12	33.3%	possibly_damaging(0.846)	tolerated(0.1)	deleterious(0.611)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
TRIM77P	390231	genome.wustl.edu	37	11	89447493	89447493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343107.1	+1	model	p.R214I	0.000	94	0%	54	9.3%	0	-	-	-	-	NULL
TRIM77P	390231	genome.wustl.edu	37	11	89448325	89448325	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343107.1	+1	model	e4-1	0.139	149	0%	94	27.7%	0	-	-	-	-	-
TRIM49	57093	genome.wustl.edu	37	11	89537460	89537460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020358.2	-1	reviewed	p.E60K	0.000	355	0%	286	17.5%	1	0%	benign(0.002)	tolerated(0.66)	neutral(0.003)	superfamily_SSF57850
TRIM64B	642446	genome.wustl.edu	37	11	89607411	89607411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000329862	-1	known	p.Q181K	0.015	336	0%	268	12.7%	0	-	benign(0.018)	deleterious(0.05)	neutral(0.346)	NULL
LOC653111	653111	genome.wustl.edu	37	11	89774681	89774681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_926073.2	+1	model	p.P441L	0.000	97	0%	124	20.2%	0	-	benign(0.003)	tolerated(0.18)	neutral(0.056)	HMMPfam_SPRY,HMMSmart_SM00449
NAALAD2	10003	genome.wustl.edu	37	11	89911088	89911088	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005467.3	+1	reviewed	p.K554T	0.000	84	0%	51	13.7%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	superfamily_Zn-dependent exopeptidases
NAALAD2	10003	genome.wustl.edu	37	11	89911237	89911237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005467.3	+1	reviewed	p.L604I	0.962	77	0%	57	35.1%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
ENSG00000214391	0	genome.wustl.edu	37	11	90016838	90016838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000318973	+1	known	p.R338H	1.000	87	0%	75	28%	0	-	-	-	-	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
ENSG00000214391	0	genome.wustl.edu	37	11	90016997	90016997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000318973	+1	known	p.K382N	1.000	178	0%	123	25.2%	1320	0%	-	-	-	superfamily_Tub_FtsZ_C
FAT3	120114	genome.wustl.edu	37	11	92085295	92085295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.G6E	1.000	43	0%	20	35%	0	-	possibly_damaging(0.465)	tolerated(0.19)	neutral(0.203)	NULL
FAT3	120114	genome.wustl.edu	37	11	92086422	92086422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.D382N	0.345	173	0%	79	30.4%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_Cadherin,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92087853	92087853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.D859Y	1.000	118	0%	33	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92088406	92088406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.F1043S	1.000	154	0%	69	26.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92258043	92258043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.S1179F	1.000	46	0%	24	16.7%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92495169	92495169	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.E1273*	1.000	129	0%	60	38.3%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92532478	92532478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.G2100V	1.000	81	0%	35	28.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92534371	92534371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.R2731M	0.020	98	0%	46	30.4%	1	0%	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92577151	92577151	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008781.2	+1	validated	p.R3540*	0.986	70	0%	59	25.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
MTNR1B	4544	genome.wustl.edu	37	11	92714946	92714946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005959.3	+1	reviewed	p.R186H	0.997	83	0%	80	43.8%	0	-	possibly_damaging(0.935)	deleterious(0.01)	deleterious(0.786)	HMMPfam_7tm_1,superfamily_SSF81321
SLC36A4	120103	genome.wustl.edu	37	11	92899138	92899138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152313.2	-1	provisional	p.K271N	1.000	120	0%	66	27.3%	8	0%	benign(0.099)	tolerated(0.07)	neutral(0.327)	HMMPfam_Aa_trans
KIAA1731	85459	genome.wustl.edu	37	11	93428789	93428789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033395.1	+1	validated	p.Q554K	0.096	59	0%	38	44.7%	1	100%	possibly_damaging(0.88)	tolerated(0.26)	neutral(0.377)	NULL
SCARNA9	619383	genome.wustl.edu	37	11	93454882	93454882	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_002569.1	+1	provisional	NULL	0.002	20	0%	16	37.5%	2	0%	-	-	-	-
KIAA1731	85459	genome.wustl.edu	37	11	93455213	93455213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033395.1	+1	validated	p.P1982T	0.962	146	0%	70	31.4%	8	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
MED17	9440	genome.wustl.edu	37	11	93523932	93523932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004268.4	+1	reviewed	p.L204I	1.000	68	0%	68	20.6%	16	68.7%	probably_damaging(0.999)	tolerated(0.83)	deleterious(0.491)	HMMPfam_DUF2364
HEPHL1	341208	genome.wustl.edu	37	11	93779033	93779033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098672.1	+1	validated	p.R122Q	1.000	106	0%	68	27.9%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_Cupredoxin,HMMPfam_Cu-oxidase_3
HEPHL1	341208	genome.wustl.edu	37	11	93797538	93797538	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098672.1	+1	validated	p.R224*	0.208	191	0%	71	26.8%	0	-	-	-	-	superfamily_Cupredoxin
HEPHL1	341208	genome.wustl.edu	37	11	93822038	93822038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098672.1	+1	validated	p.R733I	1.000	86	0%	95	25.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Cupredoxin
GPR83	10888	genome.wustl.edu	37	11	94113735	94113735	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016540.3	-1	validated	p.R284	0.948	66	0%	60	10%	1	100%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ANKRD49	54851	genome.wustl.edu	37	11	94230094	94230094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017704.2	+1	validated	p.L79I	0.997	60	0%	63	27%	7	71.4%	benign(0.388)	deleterious(0)	deleterious(0.569)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PIWIL4	143689	genome.wustl.edu	37	11	94310653	94310653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152431.2	+1	validated	p.E170*	0.967	80	0%	64	31.2%	0	-	-	-	-	superfamily_PAZ domain
KDM4D	55693	genome.wustl.edu	37	11	94731660	94731660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018039.2	+1	validated	p.R375I	0.000	29	3.4%	26	34.6%	4	50%	possibly_damaging(0.632)	deleterious(0)	deleterious(0.665)	NULL
SESN3	143686	genome.wustl.edu	37	11	94918515	94918515	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144665.2	-1	provisional	p.G223*	1.000	87	0%	28	42.9%	7	14.2%	-	-	-	HMMPfam_PA26
CEP57	9702	genome.wustl.edu	37	11	95546683	95546683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014679.3	+1	validated	p.K145T	1.000	125	0%	74	33.8%	18	61.1%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_DUF1167
CEP57	9702	genome.wustl.edu	37	11	95564240	95564240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014679.3	+1	validated	p.K441N	0.285	106	0%	49	34.7%	25	52%	benign(0.04)	tolerated(0.16)	neutral(0.062)	NULL
CCDC82	79780	genome.wustl.edu	37	11	96092197	96092197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024725.3	-1	validated	p.R509I	1.000	429	0%	280	36.8%	21	71.4%	possibly_damaging(0.914)	deleterious(0.01)	deleterious(0.772)	NULL
JRKL	8690	genome.wustl.edu	37	11	96124874	96124874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003772.3	+1	reviewed	p.K354T	0.955	78	0%	132	27.3%	15	53.3%	probably_damaging(0.981)	tolerated(0.17)	deleterious(0.484)	HMMPfam_DDE
CNTN5	53942	genome.wustl.edu	37	11	100211262	100211262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014361.2	+1	reviewed	p.S933Y	1.000	90	0%	43	27.9%	0	-	probably_damaging(0.956)	tolerated(0.11)	deleterious(0.671)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ARHGAP42	143872	genome.wustl.edu	37	11	100803894	100803894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152432.2	+1	provisional	p.S202L	1.000	324	0%	115	32.2%	2	100%	benign(0.046)	deleterious(0.01)	neutral(0.408)	NULL
PGR	5241	genome.wustl.edu	37	11	100922293	100922293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000926.4	-1	reviewed	p.R740Q	1.000	93	0%	48	35.4%	4	50%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TRPC6	7225	genome.wustl.edu	37	11	101374758	101374758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004621.5	-1	reviewed	p.F314L	1.000	92	0%	52	28.8%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_TRP_2
ANGPTL5	253935	genome.wustl.edu	37	11	101762064	101762064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178127.4	-1	validated	p.K371N	0.999	114	0.9%	56	30.4%	0	-	benign(0.286)	tolerated(0.14)	neutral(0.338)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
KIAA1377	57562	genome.wustl.edu	37	11	101815129	101815129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020802.2	+1	validated	p.R128W	0.996	131	0%	95	33.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1377	57562	genome.wustl.edu	37	11	101832651	101832651	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020802.2	+1	validated	p.C295	0.528	76	0%	48	29.2%	0	-	-	-	-	NULL
BIRC2	329	genome.wustl.edu	37	11	102220612	102220612	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001166.3	+1	reviewed	p.L9	0.101	145	0%	260	30%	13	38.4%	-	-	-	NULL
BIRC2	329	genome.wustl.edu	37	11	102233636	102233636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001166.3	+1	reviewed	p.F335L	1.000	210	0%	132	26.5%	35	34.2%	benign(0.021)	deleterious(0.01)	neutral(0.407)	HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,superfamily_SSF57924
MMP10	4319	genome.wustl.edu	37	11	102641620	102641620	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002425.2	-1	reviewed	p.F445L	0.057	98	0%	194	28.9%	5	60%	benign(0.036)	tolerated(0.19)	neutral(0.052)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP3	4314	genome.wustl.edu	37	11	102713251	102713251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002422.3	-1	reviewed	p.A137V	1.000	245	0%	150	26.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP12	4321	genome.wustl.edu	37	11	102743826	102743826	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000326227	-1	known	p.F40C	0.796	52	0%	24	20.8%	5	0%	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD-like
DYNC2H1	79659	genome.wustl.edu	37	11	103025448	103025448	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080463.1	+1	reviewed	p.E1161D	1.000	198	0%	132	25%	3	0%	benign(0.005)	tolerated(1)	-	HMMPfam_DHC_N2
DYNC2H1	79659	genome.wustl.edu	37	11	103031686	103031686	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080463.1	+1	reviewed	p.E1468	0.980	68	0%	31	32.3%	0	-	-	-	-	HMMPfam_DHC_N2
DYNC2H1	79659	genome.wustl.edu	37	11	103116086	103116086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080463.1	+1	reviewed	p.R3349Q	1.000	127	0%	37	29.7%	5	60%	benign(0.325)	tolerated(0.24)	neutral(0.139)	NULL
CASP4	837	genome.wustl.edu	37	11	104825573	104825573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001225.3	-1	reviewed	p.R55W	0.000	284	0%	119	31.1%	37	13.5%	benign(0.245)	tolerated(0.13)	neutral(0.278)	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain
CASP5	838	genome.wustl.edu	37	11	104893891	104893891	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_024239.1	-1	reviewed	NULL	0.000	94	0%	57	28.1%	0	-	-	-	-	-
CASP1	834	genome.wustl.edu	37	11	104900471	104900471	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033292.2	-1	reviewed	p.I261	0.999	93	0%	53	18.9%	31	0%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CARD17	440068	genome.wustl.edu	37	11	104971391	104971391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007232.1	-1	provisional	p.E41D	0.030	262	0%	139	30.9%	0	-	benign(0.146)	tolerated(0.34)	neutral(0.036)	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like
GRIA4	2893	genome.wustl.edu	37	11	105483032	105483032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000829.3	+1	reviewed	p.E40K	1.000	116	0%	204	36.8%	0	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA4	2893	genome.wustl.edu	37	11	105483048	105483048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000829.3	+1	reviewed	p.R45Q	1.000	123	0%	217	24.4%	0	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA4	2893	genome.wustl.edu	37	11	105623906	105623906	+	Silent	SNP	C	C	T	rs146471234	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000829.3	+1	reviewed	p.Y149	0.984	134	0%	52	34.6%	1	0%	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA4	2893	genome.wustl.edu	37	11	105781203	105781203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000829.3	+1	reviewed	p.D401Y	1.000	210	0%	116	12.1%	8	0%	benign(0.012)	deleterious(0.02)	neutral(0.384)	superfamily_SSF53822
GUCY1A2	2977	genome.wustl.edu	37	11	106810754	106810754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000855.1	-1	validated	p.S213Y	1.000	85	0%	42	33.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HNOB,superfamily_H-NOX domain
CWF19L2	143884	genome.wustl.edu	37	11	107286951	107286951	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152434.2	-1	validated	p.K534T	0.995	222	0%	125	34.4%	4	75%	possibly_damaging(0.637)	tolerated(0.31)	neutral(0.250)	NULL
ELMOD1	55531	genome.wustl.edu	37	11	107501287	107501287	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018712.3	+1	validated	p.I54	0.872	184	0%	115	31.3%	0	-	-	-	-	NULL
ELMOD1	55531	genome.wustl.edu	37	11	107518205	107518205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018712.3	+1	validated	p.F144L	1.000	147	0%	92	42.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_ELMO_CED12
ELMOD1	55531	genome.wustl.edu	37	11	107535786	107535786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018712.3	+1	validated	p.E290K	1.000	89	0%	59	30.5%	0	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_ELMO_CED12
SLC35F2	54733	genome.wustl.edu	37	11	107673734	107673734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017515.4	-1	validated	p.G311D	0.934	125	0%	72	31.9%	3	66.6%	benign(0.121)	tolerated(0.31)	neutral(0.036)	HMMPfam_DUF914,superfamily_Multidrug resistance efflux transporter EmrE
SLC35F2	54733	genome.wustl.edu	37	11	107686623	107686623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017515.4	-1	validated	p.S60N	1.000	90	0%	58	32.8%	6	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_DUF914
CUL5	8065	genome.wustl.edu	37	11	107925453	107925453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003478.3	+1	validated	p.E211D	1.000	85	0%	54	33.3%	5	0%	benign(0.037)	tolerated(0.53)	neutral(0.009)	HMMPfam_Cullin,superfamily_Cullin repeat
ATM	472	genome.wustl.edu	37	11	108106457	108106457	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000051.3	+1	reviewed	p.S131*	1.000	249	0%	117	23.1%	0	-	-	-	-	NULL
ATM	472	genome.wustl.edu	37	11	108122664	108122664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000051.3	+1	reviewed	p.F570L	0.139	150	0%	120	24.2%	1	0%	benign(0.009)	tolerated(0.49)	neutral(0.011)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108141988	108141988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000051.3	+1	reviewed	p.S978A	1.000	180	0%	99	20.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108153601	108153601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000051.3	+1	reviewed	p.F1247L	1.000	132	0%	75	28%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108170482	108170482	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000051.3	+1	reviewed	p.F1683V	1.000	183	0%	75	26.7%	2	0%	possibly_damaging(0.496)	tolerated(0.05)	deleterious(0.511)	superfamily_ARM repeat
C11orf65	160140	genome.wustl.edu	37	11	108302483	108302483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152587.3	-1	validated	p.N55T	1.000	268	0%	179	26.3%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
KDELC2	143888	genome.wustl.edu	37	11	108350068	108350068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153705.4	-1	validated	p.R418I	1.000	118	0%	61	26.2%	16	50%	possibly_damaging(0.598)	deleterious(0.04)	deleterious(0.556)	HMMSmart_SM00672
EXPH5	23086	genome.wustl.edu	37	11	108382675	108382675	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015065.2	-1	validated	p.E1187*	0.005	99	0%	58	10.3%	2	50%	-	-	-	NULL
EXPH5	23086	genome.wustl.edu	37	11	108384130	108384130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015065.2	-1	validated	p.D702Y	0.219	130	0%	90	31.1%	3	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DDX10	1662	genome.wustl.edu	37	11	108547920	108547920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004398.2	+1	reviewed	p.K163Q	1.000	172	0%	158	34.8%	17	41.1%	possibly_damaging(0.481)	deleterious(0.03)	deleterious(0.524)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
RDX	5962	genome.wustl.edu	37	11	110134830	110134830	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002906.3	-1	reviewed	p.E108*	1.000	102	0%	85	34.1%	9	0%	-	-	-	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
RDX	5962	genome.wustl.edu	37	11	110134879	110134879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002906.3	-1	reviewed	p.E91D	1.000	93	0%	50	38%	7	28.5%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
RDX	5962	genome.wustl.edu	37	11	110135536	110135536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002906.3	-1	reviewed	p.G54C	1.000	173	0%	188	11.2%	15	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
ARHGAP20	57569	genome.wustl.edu	37	11	110454337	110454337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020809.2	-1	validated	p.A514T	0.996	179	0%	111	30.6%	0	-	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
C11orf88	399949	genome.wustl.edu	37	11	111385531	111385531	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207430.2	+1	validated	p.E8*	0.000	16	0%	42	35.7%	0	-	-	-	-	NULL
PPP2R1B	5519	genome.wustl.edu	37	11	111626165	111626165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181699.2	-1	reviewed	p.R233C	1.000	66	0%	65	33.8%	22	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM-type_fold
ALG9	79796	genome.wustl.edu	37	11	111715427	111715427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024740.2	-1	reviewed	p.F305L	1.000	100	0%	44	27.3%	6	33.3%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Glyco_transf_22
DIXDC1	85458	genome.wustl.edu	37	11	111866133	111866133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000440460	+1	known	p.D511N	0.999	73	0%	48	29.2%	2	50%	probably_damaging(0.979)	tolerated(0.16)	deleterious(0.481)	NULL
DIXDC1	85458	genome.wustl.edu	37	11	111888523	111888523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000440460	+1	known	p.D628N	1.000	153	0%	171	22.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DIX,HMMSmart_SM00021
DLAT	1737	genome.wustl.edu	37	11	111930706	111930706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001931.4	+1	reviewed	p.K532E	1.000	113	0%	84	29.8%	22	36.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
C11orf57	55216	genome.wustl.edu	37	11	111953418	111953418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082969.1	+1	validated	p.Q202E	0.999	109	0%	138	26.8%	11	54.5%	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
IL18	3606	genome.wustl.edu	37	11	112020859	112020859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001562.2	-1	reviewed	p.Q54H	1.000	192	0%	78	38.5%	19	0%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMSmart_IL1,superfamily_Cytok_IL1_like
TEX12	56158	genome.wustl.edu	37	11	112041240	112041240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031275.4	+1	reviewed	p.E54D	1.000	106	0%	158	28.5%	0	-	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
TMPRSS5	80975	genome.wustl.edu	37	11	113569663	113569663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030770.2	-1	reviewed	p.A98T	0.000	70	0%	68	14.7%	2	50%	unknown(0)	deleterious(0)	-	NULL
TMPRSS5	80975	genome.wustl.edu	37	11	113569741	113569741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030770.2	-1	reviewed	p.L72M	1.000	72	0%	62	24.2%	0	-	unknown(0)	deleterious(0)	-	NULL
USP28	57646	genome.wustl.edu	37	11	113674585	113674585	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020886.2	-1	validated	p.D891E	1.000	104	0%	86	33.7%	18	27.7%	probably_damaging(0.996)	tolerated(0.73)	neutral(0.463)	NULL
HTR3B	9177	genome.wustl.edu	37	11	113802150	113802150	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006028.3	+1	reviewed	p.E86	1.000	186	0%	113	29.2%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ZBTB16	7704	genome.wustl.edu	37	11	113934591	113934591	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001018011.1	+1	reviewed	p.S190*	1.000	30	0%	52	38.5%	0	-	-	-	-	NULL
ZBTB16	7704	genome.wustl.edu	37	11	114121232	114121232	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001018011.1	+1	reviewed	p.P659	0.972	55	0%	65	32.3%	0	-	-	-	-	NULL
FAM55B	120406	genome.wustl.edu	37	11	114550443	114550443	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182495.5	+1	validated	p.I31L	0.046	161	0%	65	38.5%	0	-	benign(0.07)	tolerated(0.1)	neutral(0.291)	NULL
FAM55B	120406	genome.wustl.edu	37	11	114569031	114569031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182495.5	+1	validated	p.L133M	0.834	275	0%	122	32.8%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_E set domains
FAM55B	120406	genome.wustl.edu	37	11	114569318	114569318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182495.5	+1	validated	p.F228L	0.000	97	0%	51	39.2%	0	-	benign(0.002)	tolerated(0.65)	neutral(0.003)	NULL
APOA1	335	genome.wustl.edu	37	11	116707817	116707817	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000039.1	-1	reviewed	p.R34*	0.001	61	0%	94	37.2%	3	33.3%	-	-	-	superfamily_SSF47162
SIK3	23387	genome.wustl.edu	37	11	116747037	116747037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025164.3	-1	validated	p.D285Y	1.000	187	0%	94	35.1%	14	28.5%	possibly_damaging(0.851)	deleterious(0)	deleterious(0.772)	superfamily_Protein kinase-like (PK-like)
SIDT2	51092	genome.wustl.edu	37	11	117064585	117064585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040455.1	+1	validated	p.R743M	0.989	67	0%	126	31%	26	42.3%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	NULL
PCSK7	9159	genome.wustl.edu	37	11	117100550	117100550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004716.2	-1	reviewed	p.G4E	1.000	19	0%	20	30%	25	8%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
RNF214	257160	genome.wustl.edu	37	11	117109397	117109397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077239.1	+1	validated	p.R63I	1.000	61	0%	80	22.5%	12	25%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
RNF214	257160	genome.wustl.edu	37	11	117110570	117110570	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077239.1	+1	validated	p.K224N	1.000	119	0%	145	36.6%	10	40%	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	NULL
RNF214	257160	genome.wustl.edu	37	11	117152097	117152097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077239.1	+1	validated	p.R405W	1.000	181	0.6%	127	33.1%	22	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP164	22897	genome.wustl.edu	37	11	117280540	117280540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014956.4	+1	validated	p.A1319S	0.186	41	0%	57	26.3%	11	27.2%	benign(0.04)	deleterious(0.01)	neutral(0.408)	NULL
DSCAML1	57453	genome.wustl.edu	37	11	117376281	117376281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020693.2	-1	provisional	p.F710L	1.000	151	0%	193	24.4%	0	-	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SCN2B	6327	genome.wustl.edu	37	11	118039348	118039348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004588.4	-1	validated	p.F63L	1.000	191	0%	271	34.3%	0	-	possibly_damaging(0.903)	tolerated(0.48)	neutral(0.368)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CD3E	916	genome.wustl.edu	37	11	118183553	118183553	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000733.3	+1	reviewed	p.A108	0.000	110	0.9%	107	29.9%	71	0%	-	-	-	superfamily_Immunoglobulin
ENSG00000244817	0	genome.wustl.edu	37	11	118184605	118184605	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501549	-1	known	NULL	0.000	39	0%	34	26.5%	1	0%	-	-	-	-
CD3D	915	genome.wustl.edu	37	11	118210547	118210547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000732.4	-1	reviewed	p.L117F	0.758	54	0%	80	37.5%	81	0%	benign(0.195)	tolerated(0.21)	neutral(0.062)	NULL
CD3D	915	genome.wustl.edu	37	11	118211093	118211093	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000732.4	-1	reviewed	p.R91*	1.000	228	0%	234	26.9%	69	0%	-	-	-	superfamily_Immunoglobulin
CD3D	915	genome.wustl.edu	37	11	118211295	118211295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000732.4	-1	reviewed	p.K23N	0.000	152	0%	148	30.4%	55	0%	possibly_damaging(0.905)	deleterious(0.02)	deleterious(0.742)	superfamily_Immunoglobulin
UBE4A	9354	genome.wustl.edu	37	11	118244282	118244282	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004788.2	+1	reviewed	p.I340S	1.000	209	0%	95	11.6%	6	0%	benign(0.167)	deleterious(0)	neutral(0.460)	HMMPfam_Ufd2P_core
IFT46	56912	genome.wustl.edu	37	11	118425222	118425222	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020153.3	-1	validated	p.T196	0.045	146	0%	120	31.7%	30	43.3%	-	-	-	NULL
IFT46	56912	genome.wustl.edu	37	11	118430509	118430509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020153.3	-1	validated	p.E12D	0.998	176	0%	152	28.9%	26	53.8%	benign(0.181)	deleterious(0)	neutral(0.461)	NULL
PHLDB1	23187	genome.wustl.edu	37	11	118512999	118512999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144758.1	+1	validated	p.D922Y	1.000	138	0%	196	29.1%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
TREH	11181	genome.wustl.edu	37	11	118530561	118530561	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000264029	-1	known	p.E405	0.000	69	0%	79	20.3%	0	-	-	-	-	HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases
SLC37A4	2542	genome.wustl.edu	37	11	118898948	118898948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000330775	-1	known	p.A113T	1.000	49	0%	80	18.8%	39	41%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC37A4	2542	genome.wustl.edu	37	11	118900041	118900041	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000330775	-1	known	p.I13	1.000	82	0%	126	38.9%	38	55.2%	-	-	-	superfamily_MFS general substrate transporter
VPS11	55823	genome.wustl.edu	37	11	118948606	118948606	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000300793	+1	known	p.R530*	0.953	65	0%	59	25.4%	34	11.7%	-	-	-	superfamily_ARM repeat
HINFP	25988	genome.wustl.edu	37	11	118997750	118997750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015517.3	+1	validated	p.F32L	0.999	129	0%	126	25.4%	15	26.6%	possibly_damaging(0.942)	tolerated(0.21)	neutral(0.431)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
NLRX1	79671	genome.wustl.edu	37	11	119044612	119044612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024618.2	+1	reviewed	p.Q218H	1.000	61	0%	93	39.8%	11	45.4%	benign(0.007)	tolerated(0.06)	neutral(0.323)	HMMPfam_NACHT
MCAM	4162	genome.wustl.edu	37	11	119180610	119180610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006500.2	-1	validated	p.D643Y	1.000	140	0%	229	37.1%	34	2.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MCAM	4162	genome.wustl.edu	37	11	119185257	119185257	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006500.2	-1	validated	p.Y167*	1.000	48	0%	102	33.3%	10	10%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
USP2	9099	genome.wustl.edu	37	11	119244150	119244150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004205.4	-1	validated	p.S14L	0.737	38	0%	26	26.9%	0	-	benign(0.253)	deleterious(0)	deleterious(0.471)	NULL
TRIM29	23650	genome.wustl.edu	37	11	119993732	119993732	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012101.3	-1	reviewed	p.T455	0.000	140	0%	173	33.5%	1	0%	-	-	-	NULL
TRIM29	23650	genome.wustl.edu	37	11	120008341	120008341	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012101.3	-1	reviewed	p.S133	0.055	27	0%	26	34.6%	0	-	unknown(0)	-	-	NULL
POU2F3	25833	genome.wustl.edu	37	11	120178322	120178322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014352.2	+1	validated	p.D302Y	1.000	58	0%	51	13.7%	0	-	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ARHGEF12	23365	genome.wustl.edu	37	11	120300433	120300433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015313.1	+1	reviewed	p.D226N	1.000	63	0%	32	28.1%	8	0%	possibly_damaging(0.575)	deleterious(0)	deleterious(0.641)	NULL
ARHGEF12	23365	genome.wustl.edu	37	11	120348882	120348882	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015313.1	+1	reviewed	p.E1184*	0.999	88	0%	81	30.9%	19	21%	-	-	-	NULL
TBCEL	219899	genome.wustl.edu	37	11	120918273	120918273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130047.1	+1	validated	p.S57N	1.000	112	0%	60	15%	5	20%	possibly_damaging(0.452)	tolerated(1)	neutral(0.148)	superfamily_SSF52047
TBCEL	219899	genome.wustl.edu	37	11	120957608	120957608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130047.1	+1	validated	p.R360S	1.000	137	0%	53	34%	4	25%	probably_damaging(0.961)	tolerated(0.34)	neutral(0.427)	superfamily_SSF54236
TECTA	7007	genome.wustl.edu	37	11	120980043	120980043	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005422.2	+1	reviewed	p.R108*	1.000	105	0%	82	41.5%	0	-	-	-	-	HMMSmart_SM00539
SORL1	6653	genome.wustl.edu	37	11	121340795	121340795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003105.4	+1	reviewed	p.R122Q	1.000	64	0%	60	35%	23	43.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
SORL1	6653	genome.wustl.edu	37	11	121495843	121495843	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003105.4	+1	reviewed	p.L2074R	1.000	180	0%	60	18.3%	37	37.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00060,superfamily_Fibronectin type III
CRTAM	56253	genome.wustl.edu	37	11	122738133	122738133	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019604.2	+1	validated	p.Y278	0.000	136	0%	73	27.4%	2	0%	-	-	-	NULL
C11orf63	79864	genome.wustl.edu	37	11	122756568	122756568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024806.2	+1	validated	p.R4H	0.001	73	0%	113	23.9%	4	0%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122830153	122830153	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024806.2	+1	validated	p.*779Y	0.925	70	0%	31	48.4%	5	40%	-	-	-	NULL
GRAMD1B	57476	genome.wustl.edu	37	11	123483481	123483481	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020716.1	+1	validated	p.E501	1.000	47	0%	52	26.9%	1	0%	-	-	-	NULL
GRAMD1B	57476	genome.wustl.edu	37	11	123484168	123484168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020716.1	+1	validated	p.E534K	0.992	54	0%	39	33.3%	1	0%	possibly_damaging(0.736)	tolerated(0.06)	deleterious(0.592)	NULL
OR6X1	390260	genome.wustl.edu	37	11	123624874	123624874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005188.1	-1	provisional	p.F118C	0.994	184	0%	195	29.7%	0	-	possibly_damaging(0.444)	deleterious(0.03)	deleterious(0.509)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR4D5	219875	genome.wustl.edu	37	11	123811220	123811220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001965.1	+1	provisional	p.K299N	0.995	39	0%	32	31.2%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	superfamily_Family A G protein-coupled receptor-like
OR10G4	390264	genome.wustl.edu	37	11	123887210	123887210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004462.1	+1	provisional	p.R310M	0.001	114	0%	51	9.8%	0	-	benign(0.034)	deleterious(0.03)	neutral(0.366)	NULL
OR10G8	219869	genome.wustl.edu	37	11	123900584	123900584	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004464.1	+1	provisional	p.F85	0.000	254	0%	138	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10G8	219869	genome.wustl.edu	37	11	123900989	123900989	+	Silent	SNP	C	C	T	rs74345231		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004464.1	+1	provisional	p.I220	0.579	304	0.3%	130	25.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8G5	219865	genome.wustl.edu	37	11	124134859	124134859	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005198.1	+1	provisional	p.K46T	0.005	111	0%	68	42.6%	0	-	-	-	-	superfamily_SSF81321
OR8G5	219865	genome.wustl.edu	37	11	124135474	124135474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005198.1	+1	provisional	p.S251I	0.000	216	0%	173	27.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR8B3	390271	genome.wustl.edu	37	11	124266319	124266319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005467.1	-1	provisional	p.R310I	0.000	58	0%	55	27.3%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_Family A G protein-coupled receptor-like
ROBO3	64221	genome.wustl.edu	37	11	124744110	124744110	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022370.3	+1	reviewed	p.V643	1.000	50	0%	83	33.7%	0	-	-	-	-	superfamily_Fibronectin type III
ROBO4	54538	genome.wustl.edu	37	11	124757715	124757715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019055.5	-1	validated	p.S657F	1.000	145	0%	168	36.3%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HEPACAM	220296	genome.wustl.edu	37	11	124794764	124794764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152722.4	-1	validated	p.R96L	1.000	50	0%	119	31.1%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CCDC15	80071	genome.wustl.edu	37	11	124829718	124829718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025004.2	+1	validated	p.K112T	1.000	41	0%	50	26%	1	0%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
CCDC15	80071	genome.wustl.edu	37	11	124857217	124857217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025004.2	+1	validated	p.M365I	0.000	140	0%	151	29.1%	2	50%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
SLC37A2	219855	genome.wustl.edu	37	11	124958022	124958022	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145290.1	+1	validated	p.E500*	1.000	116	0%	253	32%	5	0%	-	-	-	NULL
PKNOX2	63876	genome.wustl.edu	37	11	125221252	125221252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022062.2	+1	validated	p.Q17H	1.000	46	0%	75	40%	0	-	unknown(0)	deleterious(0)	-	NULL
FEZ1	9638	genome.wustl.edu	37	11	125359520	125359520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005103.3	-1	reviewed	p.E52K	1.000	124	0%	94	38.3%	2	0%	possibly_damaging(0.556)	deleterious(0)	deleterious(0.634)	NULL
EI24	9538	genome.wustl.edu	37	11	125446171	125446171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000343678	+1	known	p.R70I	1.000	416	0%	440	34.3%	158	49.3%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
STT3A	3703	genome.wustl.edu	37	11	125474139	125474139	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152713.3	+1	validated	p.E169*	1.000	130	0%	164	25%	173	7.5%	-	-	-	HMMPfam_STT3
ACRV1	56	genome.wustl.edu	37	11	125542516	125542516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001612.4	-1	reviewed	p.R257Q	0.537	130	0%	76	26.3%	0	-	possibly_damaging(0.439)	tolerated(0.21)	neutral(0.187)	NULL
PUS3	83480	genome.wustl.edu	37	11	125763751	125763751	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031307.3	-1	validated	p.E459*	0.915	275	0%	355	28.2%	30	43.3%	-	-	-	NULL
HYLS1	219844	genome.wustl.edu	37	11	125769601	125769601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134793.1	+1	reviewed	p.S113L	0.993	95	0%	175	63.4%	4	75%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DDX25	29118	genome.wustl.edu	37	11	125781240	125781240	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013264.3	+1	reviewed	p.I219	0.268	151	0%	171	32.2%	0	-	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX25	29118	genome.wustl.edu	37	11	125781357	125781357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013264.3	+1	reviewed	p.F258L	0.997	178	0%	205	40%	0	-	benign(0.008)	tolerated(1)	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDON	50937	genome.wustl.edu	37	11	125880415	125880415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016952.4	-1	validated	p.R458Q	0.980	149	0%	53	37.7%	1	100%	benign(0.138)	tolerated(0.09)	neutral(0.308)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SRPR	6734	genome.wustl.edu	37	11	126137493	126137493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003139.3	-1	reviewed	p.L106V	0.920	77	0%	121	38%	39	38.4%	benign(0.001)	tolerated(0.7)	neutral(0.002)	HMMPfam_SRP-alpha_N
DCPS	28960	genome.wustl.edu	37	11	126208231	126208231	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014026.3	+1	validated	p.F191	0.909	170	0%	188	27.7%	88	39.7%	-	-	-	HMMPfam_DcpS,superfamily_His_triad-like_motif
TP53AIP1	63970	genome.wustl.edu	37	11	128807548	128807548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022112.1	-1	provisional	p.D56Y	0.002	63	0%	40	15%	0	-	possibly_damaging(0.538)	-	-	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128839656	128839656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142685.1	-1	validated	p.L1804I	1.000	108	0%	131	32.1%	6	66.6%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128844389	128844389	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142685.1	-1	validated	p.V887	0.153	165	0%	185	30.8%	3	33.3%	-	-	-	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	129062073	129062073	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142685.1	-1	validated	p.S7	0.460	168	0%	124	21%	0	-	-	-	-	NULL
APLP2	334	genome.wustl.edu	37	11	129993619	129993619	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001642.2	+1	validated	p.G345	1.000	105	0%	112	37.5%	265	40.7%	-	-	-	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like
APLP2	334	genome.wustl.edu	37	11	129999051	129999051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001642.2	+1	validated	p.R469W	1.000	44	0%	50	42%	765	44.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
ZBTB44	29068	genome.wustl.edu	37	11	130130859	130130859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014155.4	-1	validated	p.S304P	0.990	95	0%	38	23.7%	26	34.6%	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
ZBTB44	29068	genome.wustl.edu	37	11	130131140	130131140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014155.4	-1	validated	p.S210Y	1.000	178	0%	71	22.5%	10	40%	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
ZBTB44	29068	genome.wustl.edu	37	11	130131287	130131287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014155.4	-1	validated	p.S161Y	1.000	104	0%	63	33.3%	12	41.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZBTB44	29068	genome.wustl.edu	37	11	130131748	130131748	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014155.4	-1	validated	p.T7	1.000	49	0%	27	22.2%	16	31.2%	-	-	-	superfamily_BTB/POZ_fold
ADAMTS8	11095	genome.wustl.edu	37	11	130278671	130278671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007037.4	-1	reviewed	p.E639K	0.996	87	0%	49	32.7%	1	0%	benign(0.096)	tolerated(1)	neutral(0.007)	NULL
SNX19	399979	genome.wustl.edu	37	11	130775994	130775994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014758.2	-1	validated	p.S766Y	1.000	205	0%	142	35.2%	13	7.6%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
OPCML	4978	genome.wustl.edu	37	11	132812935	132812935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002545.3	-1	reviewed	p.S18Y	1.000	187	0%	323	16.1%	0	-	possibly_damaging(0.654)	tolerated(0.08)	deleterious(0.530)	HMMPfam_V-set
IGSF9B	22997	genome.wustl.edu	37	11	133805626	133805626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014987.1	-1	validated	p.D285N	1.000	19	0%	40	35%	0	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMSmart_IGc2,HMMSmart_FN3,HMMPfam_I-set,superfamily_SSF48726
NCAPD3	23310	genome.wustl.edu	37	11	134048775	134048775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015261.2	-1	validated	p.E872D	1.000	88	0%	76	35.5%	63	44.4%	benign(0.001)	tolerated(0.66)	neutral(0.003)	superfamily_ARM-type_fold
NCAPD3	23310	genome.wustl.edu	37	11	134074045	134074045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015261.2	-1	validated	p.R371C	0.999	82	0%	65	32.3%	31	25.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
GLB1L2	89944	genome.wustl.edu	37	11	134237170	134237170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138342.3	+1	validated	p.V275A	1.000	185	0%	304	25%	9	22.2%	possibly_damaging(0.929)	deleterious(0.05)	deleterious(0.722)	HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat
B3GAT1	27087	genome.wustl.edu	37	11	134253580	134253580	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018644.3	-1	reviewed	p.F205	0.987	14	0%	31	41.9%	2	0%	-	-	-	HMMPfam_Glyco_transf_43,superfamily_SSF53448
IQSEC3	440073	genome.wustl.edu	37	12	271213	271213	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015232.1	+1	validated	p.S552	1.000	29	0%	46	37%	1	0%	-	-	-	superfamily_SSF50729
IQSEC3	440073	genome.wustl.edu	37	12	284040	284040	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000326261	+1	known	p.G1130	0.992	14	0%	14	35.7%	0	-	-	-	-	NULL
SLC6A13	6540	genome.wustl.edu	37	12	331789	331789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016615.2	-1	provisional	p.R475H	0.998	84	0%	147	30.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SNF
B4GALNT3	283358	genome.wustl.edu	37	12	662873	662873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173593.3	+1	validated	p.A595V	0.002	70	0%	85	27.1%	11	18.1%	benign(0)	tolerated(1)	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1192513	1192513	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178040.2	+1	reviewed	p.R285*	0.999	96	0%	42	23.8%	9	0%	-	-	-	HMMPfam_Cast
ERC1	23085	genome.wustl.edu	37	12	1299188	1299188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178040.2	+1	reviewed	p.D774G	1.000	137	0%	143	31.5%	9	66.6%	probably_damaging(0.977)	tolerated(0.24)	neutral(0.456)	HMMPfam_Cast
ERC1	23085	genome.wustl.edu	37	12	1553877	1553877	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178040.2	+1	reviewed	p.A1058	1.000	83	0%	64	31.2%	3	0%	-	-	-	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	1969369	1969369	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172364.4	-1	reviewed	p.R628*	1.000	59	0%	89	25.8%	0	-	-	-	-	NULL
CACNA2D4	93589	genome.wustl.edu	37	12	1993450	1993450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172364.4	-1	reviewed	p.S437Y	0.958	114	0%	99	34.3%	0	-	benign(0.01)	deleterious(0)	neutral(0.445)	HMMSmart_SM00327,superfamily_vWA-like
CACNA1C	775	genome.wustl.edu	37	12	2224704	2224704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199460.2	+1	reviewed	p.E122K	1.000	9	0.000	19	0.368	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2595355	2595355	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199460.2	+1	reviewed	p.I281	1.000	125	0%	106	38.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1C	775	genome.wustl.edu	37	12	2774770	2774770	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199460.2	+1	reviewed	p.V1522	1.000	148	0%	127	33.1%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NRIP2	83714	genome.wustl.edu	37	12	2936836	2936836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031474.2	-1	validated	p.E236D	1.000	88	0%	80	27.5%	2	50%	benign(0.004)	tolerated(0.42)	neutral(0.014)	superfamily_Acid proteases
TEAD4	7004	genome.wustl.edu	37	12	3131142	3131142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003213.2	+1	reviewed	p.E286K	1.000	123	0%	222	23.9%	6	66.6%	possibly_damaging(0.748)	tolerated(0.05)	deleterious(0.620)	HMMPfam_TEA
PRMT8	56341	genome.wustl.edu	37	12	3659234	3659234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019854.3	+1	validated	p.A132T	1.000	86	0%	78	23.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
EFCAB4B	84766	genome.wustl.edu	37	12	3747479	3747479	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144958.1	-1	validated	p.I471	1.000	56	0%	24	37.5%	0	-	-	-	-	NULL
PARP11	57097	genome.wustl.edu	37	12	3931093	3931093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020367.4	-1	validated	p.R165Q	1.000	132	0%	133	29.3%	3	0%	benign(0.076)	tolerated(0.44)	neutral(0.018)	HMMPfam_PARP,superfamily_ADP-ribosylation
CCND2	894	genome.wustl.edu	37	12	4398020	4398020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001759.3	+1	validated	p.A195V	1.000	53	0%	65	33.8%	42	28.5%	benign(0.186)	tolerated(0.74)	neutral(0.019)	HMMPfam_Cyclin_C,superfamily_Cyclin-like
FGF23	8074	genome.wustl.edu	37	12	4479908	4479908	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020638.2	-1	reviewed	p.T119	0.014	18	0%	19	36.8%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
FGF6	2251	genome.wustl.edu	37	12	4543527	4543527	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020996.1	-1	reviewed	p.E161*	1.000	195	0%	208	34.1%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_FGF,PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like
C12orf4	57102	genome.wustl.edu	37	12	4627352	4627352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020374.2	-1	predicted	p.K302T	1.000	112	0%	94	36.2%	7	42.8%	benign(0.002)	tolerated(0.26)	neutral(0.034)	HMMPfam_DUF2362
RAD51AP1	10635	genome.wustl.edu	37	12	4653015	4653015	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130862.1	+1	validated	p.L52V	0.006	78	0%	80	28.7%	11	45.4%	possibly_damaging(0.787)	deleterious(0)	deleterious(0.739)	NULL
GALNT8	26290	genome.wustl.edu	37	12	4830012	4830012	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017417.1	+1	reviewed	p.I57L	0.005	108	0%	73	37%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
GALNT8	26290	genome.wustl.edu	37	12	4872485	4872485	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017417.1	+1	reviewed	p.T476P	0.892	138	0%	142	33.8%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	superfamily_SSF53448
KCNA6	3742	genome.wustl.edu	37	12	4919435	4919435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002235.3	+1	reviewed	p.F76L	1.000	46	0%	54	40.7%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCNA6	3742	genome.wustl.edu	37	12	4919654	4919654	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002235.3	+1	reviewed	p.K149	0.999	32	0%	65	40%	0	-	-	-	-	NULL
LOC390282	390282	genome.wustl.edu	37	12	5141823	5141823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_372447.5	-1	model	p.D91E	1.000	45	0%	29	31%	0	-	-	-	-	NULL
KCNA5	3741	genome.wustl.edu	37	12	5153716	5153716	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002234.2	+1	reviewed	p.L135	1.000	27	0%	33	24.2%	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCNA5	3741	genome.wustl.edu	37	12	5154075	5154075	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002234.2	+1	reviewed	p.I254	0.983	62	0%	122	27%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
ANO2	57101	genome.wustl.edu	37	12	5685037	5685037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020373.2	-1	validated	p.E862K	0.815	96	0%	61	37.7%	1	0%	benign(0.023)	tolerated(0.62)	neutral(0.005)	HMMPfam_DUF590
ANO2	57101	genome.wustl.edu	37	12	5853389	5853389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020373.2	-1	validated	p.A425T	1.000	103	0%	68	39.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
VWF	7450	genome.wustl.edu	37	12	6103289	6103289	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000552.3	-1	reviewed	p.E2113*	1.000	77	0%	62	35.5%	54	5.5%	-	-	-	NULL
TNFRSF1A	7132	genome.wustl.edu	37	12	6443282	6443282	+	Silent	SNP	C	C	T	rs104895280		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001065.2	-1	reviewed	p.S56	0.169	207	0%	349	37.8%	88	42%	-	-	-	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
NOP2	4839	genome.wustl.edu	37	12	6677006	6677006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033714.1	-1	validated	p.E27K	0.986	86	0%	149	20.1%	35	42.8%	benign(0.307)	deleterious(0)	deleterious(0.540)	NULL
ACRBP	84519	genome.wustl.edu	37	12	6749654	6749654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032489.2	-1	reviewed	p.T371I	0.063	36	0%	54	37%	4	0%	benign(0.071)	tolerated(0.26)	neutral(0.039)	NULL
COPS7A	50813	genome.wustl.edu	37	12	6840199	6840199	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016319.2	+1	validated	p.S274	0.976	105	0%	135	26.7%	80	32.5%	possibly_damaging(0.435)	tolerated(0.25)	neutral(0.179)	NULL
GPR162	27239	genome.wustl.edu	37	12	6933607	6933607	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019858.1	+1	reviewed	p.V181	0.998	47	0%	85	14.1%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
USP5	8078	genome.wustl.edu	37	12	6967596	6967596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098536.1	+1	validated	p.K291N	1.000	46	0%	71	39.4%	159	47.7%	possibly_damaging(0.88)	tolerated(0.21)	neutral(0.387)	NULL
TPI1	7167	genome.wustl.edu	37	12	6978532	6978532	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000365.5	+1	reviewed	p.F145	0.829	60	0%	116	25.9%	1029	23.8%	-	-	-	HMMPfam_TIM,superfamily_Triosephosphate isomerase (TIM)
LRRC23	10233	genome.wustl.edu	37	12	7015783	7015783	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135217.1	+1	validated	p.T149	0.054	34	0%	33	39.4%	24	54.1%	-	-	-	superfamily_L domain-like
C1R	715	genome.wustl.edu	37	12	7188559	7188559	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000290575	-1	known	p.I479	0.227	21	0%	20	25%	228	10.9%	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
C1R	715	genome.wustl.edu	37	12	7189577	7189577	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000290575	-1	known	p.H438	0.011	22	0%	19	26.3%	0	-	-	-	-	superfamily_Complement control module/SCR domain
C1R	715	genome.wustl.edu	37	12	7242762	7242762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000290575	-1	known	p.F119C	0.960	103	0%	122	32.8%	90	15.5%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CD163	9332	genome.wustl.edu	37	12	7640350	7640350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000396620	-1	known	p.S585Y	0.000	88	0%	51	27.5%	0	-	unknown(0)	deleterious(0.03)	-	superfamily_SRCR-like
APOBEC1	339	genome.wustl.edu	37	12	7805237	7805237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001644.3	-1	reviewed	p.M80T	0.008	55	0%	73	35.6%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like
LOC360030	360030	genome.wustl.edu	37	12	7923057	7923057	+	Missense_Mutation	SNP	C	C	T	rs77290736	byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145465.1	+1	provisional	p.T153M	0.490	91	0%	97	12.4%	0	-	possibly_damaging(0.711)	tolerated(0.09)	deleterious(0.553)	superfamily_Homeodomain_like
C3AR1	719	genome.wustl.edu	37	12	8211352	8211352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004054.2	-1	validated	p.R477I	0.000	51	0%	46	37%	23	0%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	superfamily_Family A G protein-coupled receptor-like
ZNF705A	440077	genome.wustl.edu	37	12	8327901	8327901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004328.2	+1	validated	p.L73I	0.000	310	0%	345	15.1%	0	-	possibly_damaging(0.564)	tolerated(0.13)	neutral(0.445)	NULL
ZNF705A	440077	genome.wustl.edu	37	12	8330011	8330011	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004328.2	+1	validated	p.R245	0.014	184	0%	264	32.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM90A1	55138	genome.wustl.edu	37	12	8376046	8376046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018088.3	-1	validated	p.R144M	0.019	132	0%	174	19%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MFAP5	8076	genome.wustl.edu	37	12	8808397	8808397	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003480.2	-1	reviewed	p.F42V	0.839	131	0%	114	9.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_MAGP
A2ML1	144568	genome.wustl.edu	37	12	8975299	8975299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144670.3	+1	validated	p.E18K	0.036	117	0%	83	27.7%	2	50%	benign(0.037)	tolerated(0.9)	neutral(0.002)	HMMPfam_A2M_N
A2ML1	144568	genome.wustl.edu	37	12	8994121	8994121	+	Missense_Mutation	SNP	G	G	A	rs185181365	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144670.3	+1	validated	p.V413I	0.005	122	0%	99	31.3%	1	0%	benign(0.022)	deleterious(0.04)	neutral(0.350)	NULL
A2ML1	144568	genome.wustl.edu	37	12	9010163	9010163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144670.3	+1	validated	p.R1029Q	0.005	132	0%	74	28.4%	2	50%	benign(0.008)	tolerated(0.36)	neutral(0.020)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
A2M	2	genome.wustl.edu	37	12	9262927	9262927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000014.4	-1	reviewed	p.P163S	1.000	185	0%	100	25%	50	14%	possibly_damaging(0.854)	deleterious(0)	deleterious(0.774)	HMMPfam_A2M_N
PZP	5858	genome.wustl.edu	37	12	9316372	9316372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002864.2	-1	validated	p.F876L	0.179	100	0%	105	20%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
DDX11L8	100302090	genome.wustl.edu	37	12	9451857	9451857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000415169	+1	known	p.E284*	1.000	123	0%	181	32.6%	20	5%	-	-	-	HMMSmart_SM00488
CD69	969	genome.wustl.edu	37	12	9907196	9907196	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001781.2	-1	reviewed	p.E160*	0.715	233	0%	161	11.2%	10	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC2B	9976	genome.wustl.edu	37	12	10007020	10007020	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005127.2	-1	reviewed	p.R101*	0.000	279	0%	122	32%	39	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC2A	387836	genome.wustl.edu	37	12	10074693	10074693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130711.1	-1	provisional	p.L93R	0.004	197	0%	81	23.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC7A	64581	genome.wustl.edu	37	12	10280418	10280418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_197947.2	-1	reviewed	p.R44C	0.737	66	0%	90	34.4%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ly49
KLRC1	3821	genome.wustl.edu	37	12	10603094	10603094	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002259.4	-1	reviewed	p.V91G	0.001	85	0%	59	27.1%	0	-	benign(0.004)	deleterious(0.04)	neutral(0.349)	NULL
ENSG00000180574	0	genome.wustl.edu	37	12	10659229	10659229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000322446	+1	known	p.I243S	1.000	210	0%	239	27.6%	47	0%	possibly_damaging(0.476)	deleterious(0)	deleterious(0.602)	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSDA	8531	genome.wustl.edu	37	12	10871683	10871683	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003651.4	-1	validated	p.N108H	1.000	99	0%	216	25.5%	54	40.7%	possibly_damaging(0.559)	deleterious(0.03)	deleterious(0.555)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins,PatternScan_COLD_SHOCK
TAS2R8	50836	genome.wustl.edu	37	12	10959345	10959345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023918.1	-1	reviewed	p.N79H	0.000	130	0%	47	31.9%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R9	50835	genome.wustl.edu	37	12	10962537	10962537	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023917.2	-1	reviewed	p.I46	0.500	58	0%	25	36%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R9	50835	genome.wustl.edu	37	12	10962644	10962644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023917.2	-1	reviewed	p.I11V	0.000	35	0%	16	37.5%	0	-	benign(0.066)	tolerated(0.24)	neutral(0.042)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R10	50839	genome.wustl.edu	37	12	10978708	10978708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023921.1	-1	reviewed	p.R54I	1.000	71	0%	46	41.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R14	50840	genome.wustl.edu	37	12	11091469	11091469	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023922.1	-1	reviewed	p.N113T	0.336	57	0%	45	22.2%	1	0%	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R42	353164	genome.wustl.edu	37	12	11339433	11339433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181429.1	-1	provisional	p.K37N	0.440	55	0%	29	27.6%	0	-	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_TAS2R,superfamily_SSF81321
ETV6	2120	genome.wustl.edu	37	12	12037501	12037501	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001987.4	+1	reviewed	p.R378*	1.000	109	0%	57	31.6%	11	9%	-	-	-	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
BCL2L14	79370	genome.wustl.edu	37	12	12243752	12243752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138722.1	+1	reviewed	p.L216R	1.000	112	0%	116	35.3%	1	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_Bcl-2 inhibitors of programmed cell death
LRP6	4040	genome.wustl.edu	37	12	12284876	12284876	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002336.2	-1	reviewed	p.L1283	1.000	66	0%	35	28.6%	21	57.1%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
LRP6	4040	genome.wustl.edu	37	12	12317328	12317328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002336.2	-1	reviewed	p.R644Q	1.000	174	0%	103	30.1%	4	50%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	superfamily_YWTD domain
LRP6	4040	genome.wustl.edu	37	12	12339861	12339861	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002336.2	-1	reviewed	p.P280	1.000	101	0%	78	26.9%	6	66.6%	-	-	-	superfamily_YWTD domain
ENSG00000199551	0	genome.wustl.edu	37	12	12379653	12379653	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000362681	+1	novel	NULL	0.045	62	0%	79	35.4%	0	-	-	-	-	-
LOH12CR1	118426	genome.wustl.edu	37	12	12588697	12588697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058169.3	+1	validated	p.A113V	1.000	111	0%	59	32.2%	13	84.6%	benign(0.431)	tolerated(0.28)	neutral(0.172)	HMMPfam_LOH1CR12
CDKN1B	1027	genome.wustl.edu	37	12	12871222	12871222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004064.3	+1	reviewed	p.G150E	0.142	21	0%	35	25.7%	53	41.5%	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
DDX47	51202	genome.wustl.edu	37	12	12976232	12976232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016355.3	+1	reviewed	p.I243M	0.994	134	0%	144	31.2%	37	56.7%	benign(0.019)	tolerated(0.27)	neutral(0.035)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GPRC5D	55507	genome.wustl.edu	37	12	13103186	13103186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018654.1	-1	reviewed	p.L45I	1.000	63	0%	44	15.9%	0	-	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	HMMPfam_7tm_3
KIAA1467	57613	genome.wustl.edu	37	12	13214577	13214577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020853.1	+1	validated	p.L201I	0.538	145	0%	73	27.4%	7	0%	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
GSG1	83445	genome.wustl.edu	37	12	13238145	13238145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080555.1	-1	validated	p.A260V	0.833	38	0%	29	27.6%	0	-	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	NULL
C12orf36	283422	genome.wustl.edu	37	12	13526298	13526298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182558.1	-1	provisional	p.R86Q	0.000	161	0%	83	39.8%	0	-	unknown(0)	-	-	NULL
GRIN2B	2904	genome.wustl.edu	37	12	13906752	13906752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000834.3	-1	reviewed	p.S170Y	1.000	96	0%	62	35.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53822
GUCY2C	2984	genome.wustl.edu	37	12	14836018	14836018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004963.3	-1	validated	p.S190L	0.272	110	0%	39	38.5%	0	-	benign(0.039)	deleterious(0.01)	neutral(0.408)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
H2AFJ	55766	genome.wustl.edu	37	12	14927688	14927688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177925.2	+1	reviewed	p.N95S	1.000	74	0%	126	29.4%	23	0%	benign(0.028)	deleterious(0.05)	neutral(0.347)	HMMSmart_SM00414,superfamily_Histone-fold
C12orf69	440087	genome.wustl.edu	37	12	14959566	14959566	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013698.2	-1	validated	p.E17*	1.000	84	0%	96	32.3%	0	-	-	-	-	NULL
C12orf60	144608	genome.wustl.edu	37	12	14976458	14976458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175874.3	+1	validated	p.T197A	0.000	38	0%	35	31.4%	4	75%	benign(0.005)	tolerated(0.84)	neutral(0.001)	NULL
ART4	420	genome.wustl.edu	37	12	14993625	14993625	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021071.2	-1	reviewed	p.R203*	0.997	139	0%	88	33%	0	-	-	-	-	HMMPfam_ART,superfamily_ADP-ribosylation
RERG	85004	genome.wustl.edu	37	12	15262187	15262187	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032918.1	-1	provisional	p.E153*	1.000	161	0%	113	35.4%	1	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPRO	5800	genome.wustl.edu	37	12	15654578	15654578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030667.1	+1	reviewed	p.S229F	1.000	71	0%	31	25.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PTPRO	5800	genome.wustl.edu	37	12	15654731	15654731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030667.1	+1	reviewed	p.S280Y	0.998	91	0%	39	41%	0	-	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
STRAP	11171	genome.wustl.edu	37	12	16048318	16048318	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007178.3	+1	validated	p.E176*	1.000	169	0%	138	29.7%	29	3.4%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
DERA	51071	genome.wustl.edu	37	12	16185508	16185508	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015954.2	+1	validated	p.E224*	1.000	139	0%	120	26.7%	9	0%	-	-	-	HMMPfam_DeoC,superfamily_SSF51569
SLC15A5	729025	genome.wustl.edu	37	12	16377432	16377432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000344941	-1	known	p.L423F	0.085	66	0%	33	24.2%	0	-	benign(0.045)	tolerated(1)	neutral(0.003)	HMMPfam_PTR2
SLC15A5	729025	genome.wustl.edu	37	12	16377525	16377525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000344941	-1	known	p.L392I	0.793	70	0%	31	51.6%	0	-	benign(0.351)	tolerated(0.81)	neutral(0.112)	HMMPfam_PTR2
SLC15A5	729025	genome.wustl.edu	37	12	16430571	16430571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000344941	-1	known	p.H17Y	0.000	104	0%	35	20%	0	-	benign(0.044)	tolerated(0.53)	neutral(0.010)	NULL
MGST1	4257	genome.wustl.edu	37	12	16516748	16516748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020300.3	+1	reviewed	p.E81*	1.000	215	0%	125	20%	12	58.3%	-	-	-	HMMPfam_MAPEG
LMO3	55885	genome.wustl.edu	37	12	16713468	16713468	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001395.1	-1	validated	p.F71V	1.000	69	0%	64	21.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LOC728622	728622	genome.wustl.edu	37	12	17142863	17142863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001130365.3	+1	model	p.E162D	1.000	102	0%	74	28.4%	0	-	-	-	-	HMMPfam_Skp1
RERGL	79785	genome.wustl.edu	37	12	18238553	18238553	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024730.2	-1	provisional	e3+1	1.000	228	0%	323	11.5%	0	-	-	-	-	-
PIK3C2G	5288	genome.wustl.edu	37	12	18446950	18446950	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004570.4	+1	reviewed	e4+1	1.000	70	0%	36	38.9%	0	-	-	-	-	-
PIK3C2G	5288	genome.wustl.edu	37	12	18491459	18491459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004570.4	+1	reviewed	p.L458I	0.160	139	0%	83	16.9%	1	0%	possibly_damaging(0.919)	tolerated(0.49)	neutral(0.380)	NULL
PLCZ1	89869	genome.wustl.edu	37	12	18854530	18854530	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000447925	-1	known	p.E90*	0.000	285	0%	200	11.5%	0	-	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
PLCZ1	89869	genome.wustl.edu	37	12	18872475	18872475	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033123.2	-1	provisional	p.V153	0.998	99	0%	82	36.6%	0	-	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
PLCZ1	89869	genome.wustl.edu	37	12	18876261	18876261	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033123.2	-1	provisional	p.Y117	1.000	149	0%	87	19.5%	0	-	-	-	-	HMMPfam_efhand_like,superfamily_EF-hand
CAPZA3	93661	genome.wustl.edu	37	12	18891563	18891563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033328.2	+1	reviewed	p.L121I	0.309	105	0%	41	29.3%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_F-actin_cap_A,superfamily_SSF90096
ENSG00000248116	0	genome.wustl.edu	37	12	19461080	19461080	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000510738	+1	novel	NULL	0.011	48	0%	70	30%	0	-	-	-	-	-
AEBP2	121536	genome.wustl.edu	37	12	19665345	19665345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114176.1	+1	validated	p.R438I	1.000	194	0%	111	32.4%	16	50%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	NULL
PDE3A	5139	genome.wustl.edu	37	12	20787950	20787950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000921.3	+1	validated	p.S654L	0.002	95	0%	37	35.1%	14	7.1%	benign(0.013)	tolerated(0.2)	neutral(0.050)	NULL
PDE3A	5139	genome.wustl.edu	37	12	20803520	20803520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000921.3	+1	validated	p.E971*	1.000	125	0%	49	22.4%	9	0%	-	-	-	HMMPfam_PDEase_I,superfamily_SSF109604
SLCO1C1	53919	genome.wustl.edu	37	12	20876112	20876112	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017435.4	+1	reviewed	p.F370	0.997	227	0%	246	35%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1C1	53919	genome.wustl.edu	37	12	20905357	20905357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000381552	+1	known	p.E713K	0.292	82	0%	85	29.4%	0	-	benign(0.051)	deleterious(0.05)	neutral(0.348)	NULL
LST-3TM12	338821	genome.wustl.edu	37	12	21174490	21174490	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009562.4	+1	validated	p.R105I	0.006	85	0%	69	20.3%	2	50%	benign(0.168)	tolerated(0.18)	neutral(0.071)	HMMPfam_OATP,superfamily_MFS general substrate transporter
RECQL	5965	genome.wustl.edu	37	12	21652495	21652495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002907.3	-1	reviewed	p.V4I	0.004	125	0%	222	30.6%	15	33.3%	benign(0.005)	tolerated(0.73)	neutral(0.002)	NULL
GYS2	2998	genome.wustl.edu	37	12	21728855	21728855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021957.3	-1	reviewed	p.R147Q	1.000	74	0%	56	17.9%	0	-	benign(0.056)	tolerated(0.61)	neutral(0.007)	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
KCNJ8	3764	genome.wustl.edu	37	12	21918677	21918677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004982.2	-1	reviewed	p.Q419K	0.945	122	0%	133	32.3%	4	50%	benign(0.006)	tolerated(0.05)	neutral(0.345)	NULL
ABCC9	10060	genome.wustl.edu	37	12	21962847	21962847	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005691.2	-1	reviewed	p.L1418	1.000	95	0%	19	47.4%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0528	9847	genome.wustl.edu	37	12	22676481	22676481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014802.1	-1	predicted	p.D227N	1.000	123	0%	85	31.8%	14	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22688211	22688211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014802.1	-1	predicted	p.S53L	1.000	95	0%	63	23.8%	12	41.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
ETNK1	55500	genome.wustl.edu	37	12	22796814	22796814	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018638.4	+1	reviewed	p.E181*	1.000	113	0%	42	23.8%	14	0%	-	-	-	HMMPfam_Choline_kinase,superfamily_Kinase_like
ETNK1	55500	genome.wustl.edu	37	12	22812085	22812085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018638.4	+1	reviewed	p.K274T	1.000	106	0%	35	20%	6	0%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Choline_kinase,superfamily_Kinase_like
C12orf77	196415	genome.wustl.edu	37	12	25148921	25148921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101339.1	-1	validated	p.R76Q	0.000	195	0%	106	22.6%	0	-	unknown(0)	-	-	NULL
C12orf77	196415	genome.wustl.edu	37	12	25148972	25148972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101339.1	-1	validated	p.S59Y	0.000	165	0%	98	24.5%	0	-	unknown(0)	-	-	NULL
LRMP	4033	genome.wustl.edu	37	12	25254202	25254202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006152.2	+1	reviewed	p.E278*	1.000	89	0%	83	31.3%	4	0%	-	-	-	HMMPfam_MRVI1
CASC1	55259	genome.wustl.edu	37	12	25263171	25263171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018272.3	-1	validated	p.P595S	0.026	90	0%	66	36.4%	1	0%	benign(0.377)	tolerated(0.36)	neutral(0.140)	NULL
IFLTD1	160492	genome.wustl.edu	37	12	25679865	25679865	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145728.1	-1	validated	p.A172	0.914	92	0%	70	22.9%	0	-	-	-	-	HMMPfam_IF_tail,superfamily_Lamin A/C globular tail domain
ITPR2	3709	genome.wustl.edu	37	12	26703270	26703270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002223.2	-1	validated	p.K1661N	1.000	197	0%	58	34.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TM7SF3	51768	genome.wustl.edu	37	12	27156285	27156285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016551.2	-1	validated	p.E44K	0.001	67	0%	61	23%	28	3.5%	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
TM7SF3	51768	genome.wustl.edu	37	12	27167020	27167020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016551.2	-1	validated	p.S28P	0.260	22	0%	35	40%	39	58.9%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
MED21	9412	genome.wustl.edu	37	12	27181245	27181245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004264.3	+1	provisional	p.E96*	1.000	132	0%	76	10.5%	52	9.6%	-	-	-	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27809564	27809564	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003622.2	+1	reviewed	p.L238V	0.988	107	0%	52	19.2%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Integrase_DNA
OVCH1	341350	genome.wustl.edu	37	12	29586703	29586703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183378.2	-1	validated	p.F1103C	0.006	188	0%	98	23.5%	0	-	benign(0.185)	-	-	NULL
OVCH1	341350	genome.wustl.edu	37	12	29596324	29596324	+	Missense_Mutation	SNP	C	C	T	rs190712690	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183378.2	-1	validated	p.E1043K	0.341	193	0.5%	49	30.6%	0	-	possibly_damaging(0.806)	tolerated(0.54)	neutral(0.311)	superfamily_Spermadhesin CUB domain
OVCH1	341350	genome.wustl.edu	37	12	29596371	29596371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183378.2	-1	validated	p.P1027L	0.925	173	0%	54	35.2%	0	-	benign(0.063)	tolerated(0.06)	neutral(0.327)	superfamily_Spermadhesin CUB domain
OVCH1	341350	genome.wustl.edu	37	12	29648378	29648378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183378.2	-1	validated	p.K98N	0.001	132	0%	106	15.1%	0	-	possibly_damaging(0.922)	tolerated(0.31)	neutral(0.399)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TMTC1	83857	genome.wustl.edu	37	12	29659813	29659813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175861.2	-1	provisional	p.R764Q	1.000	335	0%	158	23.4%	7	14.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00386,superfamily_TPR-like
TMTC1	83857	genome.wustl.edu	37	12	29725107	29725107	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175861.2	-1	provisional	p.N380T	1.000	206	0%	97	23.7%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00386,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_Protein prenylyltransferase
IPO8	10526	genome.wustl.edu	37	12	30792624	30792624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006390.2	-1	reviewed	p.G772W	1.000	88	0%	48	10.4%	44	4.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_ARM-type_fold
CAPRIN2	65981	genome.wustl.edu	37	12	30887917	30887917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002259.1	-1	validated	p.R265I	1.000	166	0%	135	9.6%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30906297	30906297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002259.1	-1	validated	p.R134I	1.000	56	0%	100	29%	3	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
OVOS2	144203	genome.wustl.edu	37	12	31282765	31282765	+	Missense_Mutation	SNP	A	A	C	rs2536839	byCluster;byFrequency;bySubmitter	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343151.1	-1	model	p.F1040C	0.768	141	0%	111	27.9%	0	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
OVOS2	144203	genome.wustl.edu	37	12	31292027	31292027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343151.1	-1	model	p.D648Y	1.000	112	0%	65	7.7%	0	-	-	-	-	NULL
OVOS2	144203	genome.wustl.edu	37	12	31310945	31310945	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343151.1	-1	model	p.E224*	0.627	147	0%	147	24.5%	0	-	-	-	-	HMMPfam_A2M_N
DENND5B	160518	genome.wustl.edu	37	12	31542394	31542394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144973.3	-1	validated	p.L1169I	0.997	90	0%	59	30.5%	1	0%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
METTL20	254013	genome.wustl.edu	37	12	31815197	31815197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135863.1	+1	validated	p.S104P	0.999	53	0%	65	24.6%	3	0%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_Methyltransf_16,superfamily_SSF53335
C12orf35	55196	genome.wustl.edu	37	12	32135911	32135911	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018169.3	+1	validated	p.A674	0.996	78	0%	31	22.6%	90	51.1%	-	-	-	NULL
C12orf35	55196	genome.wustl.edu	37	12	32137387	32137387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018169.3	+1	validated	p.E1166D	0.002	113	0%	64	37.5%	124	40.3%	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	NULL
C12orf35	55196	genome.wustl.edu	37	12	32138717	32138717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018169.3	+1	validated	p.D1610Y	0.008	60	0%	57	17.5%	118	15.2%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
BICD1	636	genome.wustl.edu	37	12	32260343	32260343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001714.2	+1	reviewed	p.E26D	1.000	75	0%	144	21.5%	38	28.9%	possibly_damaging(0.892)	tolerated(0.06)	deleterious(0.674)	NULL
BICD1	636	genome.wustl.edu	37	12	32481148	32481148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001714.2	+1	reviewed	p.E587*	0.939	324	0%	250	32%	16	31.2%	-	-	-	HMMPfam_BicD
FGD4	121512	genome.wustl.edu	37	12	32764103	32764103	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139241.2	+1	reviewed	p.E408D	1.000	137	0%	176	29.5%	7	28.5%	probably_damaging(0.973)	tolerated(0.12)	deleterious(0.675)	superfamily_DBL homology domain (DH-domain)
ALG10B	144245	genome.wustl.edu	37	12	38714264	38714264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013620.3	+1	validated	p.K224T	0.491	340	0%	197	10.2%	4	50%	benign(0.261)	tolerated(0.54)	neutral(0.035)	HMMPfam_DIE2_ALG10
CPNE8	144402	genome.wustl.edu	37	12	39242432	39242432	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153634.2	-1	reviewed	p.L73F	1.000	69	0%	24	33.3%	0	-	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KIF21A	55605	genome.wustl.edu	37	12	39735860	39735860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017641.3	-1	validated	p.E580D	0.987	425	0%	172	14%	4	0%	possibly_damaging(0.896)	tolerated(0.39)	neutral(0.369)	superfamily_WD40 repeat-like
KIF21A	55605	genome.wustl.edu	37	12	39745622	39745622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017641.3	-1	validated	p.D544Y	1.000	201	0%	66	31.8%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF21A	55605	genome.wustl.edu	37	12	39761747	39761747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017641.3	-1	validated	p.D180Y	1.000	72	0%	49	20.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCD2	225	genome.wustl.edu	37	12	40013129	40013129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005164.3	-1	reviewed	p.P97S	1.000	105	0%	105	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane_2
C12orf40	283461	genome.wustl.edu	37	12	40034797	40034797	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031748.2	+1	validated	e2+1	1.000	173	0%	60	38.3%	0	-	-	-	-	-
LRRK2	120892	genome.wustl.edu	37	12	40677750	40677750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198578.3	+1	reviewed	p.R772Q	0.998	129	0%	92	25%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40681158	40681158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198578.3	+1	reviewed	p.A836S	0.975	133	0%	100	29%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40692085	40692085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198578.3	+1	reviewed	p.K1046T	1.000	200	0%	77	26%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_LRR_1,superfamily_SSF52058
LRRK2	120892	genome.wustl.edu	37	12	40742222	40742222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198578.3	+1	reviewed	p.E2098*	1.000	167	0%	168	36.9%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
LRRK2	120892	genome.wustl.edu	37	12	40748239	40748239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198578.3	+1	reviewed	p.E2239K	0.973	102	0%	187	39.6%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMSmart_WD40,superfamily_WD40_like
PDZRN4	29951	genome.wustl.edu	37	12	41831773	41831773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013377.3	+1	validated	p.Q9H	1.000	147	0%	54	48.1%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41966242	41966242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013377.3	+1	validated	p.G296V	1.000	72	0%	31	35.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41967475	41967475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013377.3	+1	validated	p.R707Q	1.000	56	0%	38	26.3%	0	-	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41967577	41967577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013377.3	+1	validated	p.R741I	1.000	47	0%	18	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43884226	43884226	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025003.3	-1	validated	p.C363	1.000	62	0%	77	37.7%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
PUS7L	83448	genome.wustl.edu	37	12	44148312	44148312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098614.1	-1	validated	p.H246R	1.000	353	0%	310	31.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PsdUridine_synth_cat_dom
TWF1	5756	genome.wustl.edu	37	12	44191151	44191151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002822.3	-1	reviewed	p.F272L	1.000	226	0%	214	26.2%	30	33.3%	benign(0.035)	tolerated(0.94)	neutral(0.002)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
TWF1	5756	genome.wustl.edu	37	12	44193279	44193279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002822.3	-1	reviewed	p.K169N	0.998	173	0%	187	34.8%	77	51.9%	benign(0.015)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
TMEM117	84216	genome.wustl.edu	37	12	44782137	44782137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032256.1	+1	provisional	p.F409L	1.000	169	0%	77	33.8%	2	0%	possibly_damaging(0.775)	tolerated(0.15)	deleterious(0.529)	NULL
NELL2	4753	genome.wustl.edu	37	12	44926475	44926475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145107.1	-1	reviewed	p.Q615K	1.000	100	0%	79	26.6%	2	0%	benign(0.002)	tolerated(0.31)	neutral(0.027)	HMMSmart_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
ANO6	196527	genome.wustl.edu	37	12	45742045	45742045	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142679.1	+1	validated	p.F194V	1.000	122	0%	72	22.2%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARID2	196528	genome.wustl.edu	37	12	46243514	46243514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152641.2	+1	validated	p.R623C	1.000	338	0%	144	25%	10	70%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46321688	46321688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004719.2	-1	validated	p.T599I	0.000	73	0%	28	39.3%	7	28.5%	benign(0.001)	tolerated(0.53)	neutral(0.007)	NULL
SLC38A1	81539	genome.wustl.edu	37	12	46602855	46602855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077484.1	-1	validated	p.I124V	1.000	106	0%	60	21.7%	4	50%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_Aa_trans
SLC38A4	55089	genome.wustl.edu	37	12	47182374	47182374	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143824.1	-1	validated	p.S49	1.000	292	0%	95	28.4%	0	-	-	-	-	NULL
AMIGO2	347902	genome.wustl.edu	37	12	47471353	47471353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143668.1	-1	validated	p.G478E	1.000	149	0%	198	30.8%	6	0%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	NULL
AMIGO2	347902	genome.wustl.edu	37	12	47472149	47472149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143668.1	-1	validated	p.N213H	0.946	38	0%	86	39.5%	4	25%	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_SSF52058
RPAP3	79657	genome.wustl.edu	37	12	48096524	48096524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024604.2	-1	reviewed	p.D34Y	1.000	431	0%	556	33.1%	13	46.1%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
ENDOU	8909	genome.wustl.edu	37	12	48106308	48106308	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006025.3	-1	reviewed	p.Y280	0.851	71	0%	89	25.8%	0	-	-	-	-	NULL
RAPGEF3	10411	genome.wustl.edu	37	12	48134107	48134107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098531.2	-1	validated	p.R768H	1.000	59	0%	65	29.2%	5	40%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
RAPGEF3	10411	genome.wustl.edu	37	12	48140573	48140573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000395358	-1	known	p.P556S	0.000	75	0%	79	34.2%	2	50%	unknown(0)	-	-	NULL
TMEM106C	79022	genome.wustl.edu	37	12	48359769	48359769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143842.1	+1	validated	p.L134I	0.975	206	0%	338	30.5%	150	35.3%	possibly_damaging(0.555)	tolerated(0.16)	neutral(0.249)	HMMPfam_DUF1356
OR10AD1	121275	genome.wustl.edu	37	12	48596884	48596884	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004134.1	-1	provisional	p.L64	0.001	124	0%	142	37.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
H1FNT	341567	genome.wustl.edu	37	12	48723499	48723499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181788.1	+1	provisional	p.R142H	0.000	16	0%	24	29.2%	0	-	possibly_damaging(0.865)	tolerated(0.16)	neutral(0.395)	NULL
ARF3	377	genome.wustl.edu	37	12	49334835	49334835	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001659.2	-1	reviewed	p.K15M	1.000	154	0%	119	10.1%	195	10.2%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDN	23109	genome.wustl.edu	37	12	49391145	49391145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015086.1	-1	validated	p.V505A	0.000	15	0%	31	29%	0	-	benign(0)	tolerated(1)	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49416084	49416084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003482.3	-1	validated	p.T5464M	1.000	116	0%	167	46.7%	81	48.1%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
MLL2	8085	genome.wustl.edu	37	12	49424515	49424515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003482.3	-1	validated	p.T4570A	1.000	19	0%	35	28.6%	32	40.6%	unknown(0)	-	-	NULL
LMBR1L	55716	genome.wustl.edu	37	12	49491808	49491808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018113.2	-1	validated	p.A441T	0.995	31	0%	67	34.3%	32	43.7%	benign(0.098)	tolerated(0.4)	neutral(0.024)	HMMPfam_LMBR1
TUBA1A	7846	genome.wustl.edu	37	12	49579497	49579497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006009.2	-1	reviewed	p.D218Y	1.000	162	0%	261	32.6%	127	17.3%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
ENSG00000246003	0	genome.wustl.edu	37	12	49690347	49690347	+	RNA	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501178	-1	known	NULL	0.000	75	0%	152	30.9%	0	-	-	-	-	-
DNAJC22	79962	genome.wustl.edu	37	12	49745225	49745225	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024902.2	+1	provisional	p.E322	1.000	27	0%	61	34.4%	5	40%	-	-	-	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N
KCNH3	23416	genome.wustl.edu	37	12	49937815	49937815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012284.1	+1	validated	p.A314V	0.992	82	0%	169	39.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNH3	23416	genome.wustl.edu	37	12	49949456	49949456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012284.1	+1	validated	p.E730D	1.000	18	0%	62	33.9%	4	25%	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	NULL
FAM186B	84070	genome.wustl.edu	37	12	49994802	49994802	+	Silent	SNP	C	C	T	rs188991068	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032130.2	-1	validated	p.T207	0.000	107	0%	77	29.9%	2	50%	-	-	-	NULL
PRPF40B	25766	genome.wustl.edu	37	12	50027856	50027856	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031698.1	+1	provisional	p.L243	0.461	38	0%	46	15.2%	17	47%	-	-	-	NULL
PRPF40B	25766	genome.wustl.edu	37	12	50029727	50029727	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031698.1	+1	provisional	p.Q437	1.000	64	0%	94	22.3%	42	35.7%	-	-	-	HMMSmart_SM00441,superfamily_FF domain
PRPF40B	25766	genome.wustl.edu	37	12	50036426	50036426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031698.1	+1	provisional	p.R674W	1.000	207	0%	197	23.4%	30	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00441,superfamily_FF domain
AQP2	359	genome.wustl.edu	37	12	50344872	50344872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000486.5	+1	reviewed	p.A87T	0.178	25	0%	43	37.2%	11	36.3%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_MIP,superfamily_MIP
SMARCD1	6602	genome.wustl.edu	37	12	50492748	50492748	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003076.4	+1	reviewed	p.E505*	1.000	140	0%	152	34.2%	106	36.7%	-	-	-	NULL
LIMA1	51474	genome.wustl.edu	37	12	50642471	50642471	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113546.1	-1	validated	p.E22*	1.000	166	0%	104	25%	10	40%	-	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50748371	50748371	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145475.1	-1	provisional	p.K748	0.001	268	0%	281	26.3%	0	-	-	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50748419	50748419	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145475.1	-1	provisional	p.I732	0.002	198	0%	187	29.9%	0	-	-	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50749277	50749277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145475.1	-1	provisional	p.F446L	0.000	163	0%	116	34.5%	0	-	benign(0)	tolerated(1)	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50790160	50790160	+	Missense_Mutation	SNP	C	C	A	rs192954167	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145475.1	-1	provisional	p.L36F	0.000	180	0%	205	22.9%	0	-	possibly_damaging(0.901)	deleterious(0.03)	deleterious(0.722)	NULL
ATF1	466	genome.wustl.edu	37	12	51203238	51203238	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005171.3	+1	validated	e3-1	1.000	102	0%	86	24.4%	0	-	-	-	-	-
LETMD1	25875	genome.wustl.edu	37	12	51442916	51442916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015416.3	+1	validated	p.F74L	1.000	130	0%	119	26.1%	23	39.1%	possibly_damaging(0.93)	tolerated(0.25)	neutral(0.413)	NULL
CSRNP2	81566	genome.wustl.edu	37	12	51467833	51467833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030809.1	-1	provisional	p.R62W	0.985	76	0%	82	39%	22	40.9%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TFCP2	7024	genome.wustl.edu	37	12	51497987	51497987	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005653.4	-1	reviewed	e9-1	1.000	167	0%	116	24.1%	0	-	-	-	-	-
POU6F1	5463	genome.wustl.edu	37	12	51583851	51583851	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026893.1	-1	validated	NULL	0.002	8	0.000	14	0.429	6	33.3%	-	-	-	-
GALNT6	11226	genome.wustl.edu	37	12	51773116	51773116	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007210.3	-1	reviewed	p.I150	1.000	92	0%	94	23.4%	5	20%	-	-	-	superfamily_SSF53448
SLC4A8	9498	genome.wustl.edu	37	12	51864275	51864275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039960.1	+1	validated	p.L542F	1.000	276	0%	88	13.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
SCN8A	6334	genome.wustl.edu	37	12	52099239	52099239	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014191.2	+1	reviewed	p.F391	0.978	266	0%	164	27.4%	1	100%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52100483	52100483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014191.2	+1	reviewed	p.F540S	0.998	104	0%	55	25.5%	1	0%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
SCN8A	6334	genome.wustl.edu	37	12	52139729	52139729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014191.2	+1	reviewed	p.L681I	1.000	121	0%	91	29.7%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
SCN8A	6334	genome.wustl.edu	37	12	52180386	52180386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014191.2	+1	reviewed	p.L1335F	1.000	113	0%	86	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NR4A1	3164	genome.wustl.edu	37	12	52450944	52450944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002135.3	+1	reviewed	p.A421V	1.000	59	0%	119	28.6%	30	53.3%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
KRT85	3891	genome.wustl.edu	37	12	52756211	52756211	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002283.3	-1	reviewed	p.G374	0.019	39	0%	77	22.1%	0	-	-	-	-	HMMPfam_Filament
KRT6B	3854	genome.wustl.edu	37	12	52842644	52842644	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005555.3	-1	reviewed	p.I395	0.754	246	0%	261	35.2%	0	-	-	-	-	HMMPfam_Filament
KRT6C	286887	genome.wustl.edu	37	12	52863559	52863559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173086.4	-1	reviewed	p.D440G	1.000	143	0%	149	29.5%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Filament
KRT71	112802	genome.wustl.edu	37	12	52941717	52941717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033448.2	-1	reviewed	p.N343S	0.008	162	0%	151	27.8%	0	-	benign(0.017)	tolerated(0.39)	neutral(0.017)	HMMPfam_Filament
KRT73	319101	genome.wustl.edu	37	12	53005048	53005048	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175068.2	-1	reviewed	p.I350	1.000	222	0%	250	30%	0	-	-	-	-	HMMPfam_Filament
KRT2	3849	genome.wustl.edu	37	12	53039139	53039139	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000423.2	-1	reviewed	p.S528	0.206	147	0%	110	10.9%	0	-	-	-	-	NULL
KRT77	374454	genome.wustl.edu	37	12	53096751	53096751	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175078.2	-1	reviewed	p.E156D	0.998	153	0%	169	33.1%	0	-	possibly_damaging(0.582)	tolerated(0.16)	neutral(0.260)	NULL
KRT78	196374	genome.wustl.edu	37	12	53233608	53233608	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173352.2	-1	reviewed	p.K403T	1.000	71	0%	79	30.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Filament
TENC1	23371	genome.wustl.edu	37	12	53452835	53452835	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015319.2	+1	reviewed	p.S480	0.419	80	0%	116	26.7%	11	18.1%	-	-	-	NULL
TENC1	23371	genome.wustl.edu	37	12	53457540	53457540	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015319.2	+1	reviewed	p.F1378	0.948	99	0%	143	24.5%	26	19.2%	-	-	-	HMMSmart_PTB,HMMPfam_PTB,superfamily_SSF50729
IGFBP6	3489	genome.wustl.edu	37	12	53494616	53494616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002178.2	+1	validated	p.S152Y	0.230	66	0%	130	36.2%	14	7.1%	possibly_damaging(0.819)	deleterious(0.02)	deleterious(0.693)	superfamily_Thyroglobulin_1
IGFBP6	3489	genome.wustl.edu	37	12	53495877	53495877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002178.2	+1	validated	p.R217W	1.000	33	0%	92	26.1%	12	8.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Thyroglobulin_1,HMMSmart_TY,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin_1
ESPL1	9700	genome.wustl.edu	37	12	53683990	53683990	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012291.4	+1	validated	p.Q1745	0.017	85	0%	94	29.8%	18	61.1%	-	-	-	HMMPfam_Peptidase_C50
AAAS	8086	genome.wustl.edu	37	12	53714403	53714403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015665.5	-1	reviewed	p.R66I	0.998	135	0%	238	31.1%	64	34.3%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
PCBP2	5094	genome.wustl.edu	37	12	53862591	53862591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005016.5	+1	reviewed	p.S290Y	1.000	200	0%	199	30.7%	1362	42.7%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
MAP3K12	7786	genome.wustl.edu	37	12	53880860	53880860	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006301.2	-1	reviewed	p.R73*	1.000	73	0%	62	29%	7	42.8%	-	-	-	NULL
ATF7	11016	genome.wustl.edu	37	12	53926945	53926945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130059.1	-1	validated	p.S231L	1.000	52	0%	29	41.4%	10	10%	benign(0.06)	tolerated(0.23)	neutral(0.045)	NULL
HOXC12	3228	genome.wustl.edu	37	12	54350318	54350318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173860.1	+1	reviewed	p.L273M	0.999	61	0%	82	29.3%	0	-	benign(0.004)	tolerated(1)	-	HMMSmart_HOX,superfamily_Homeodomain_like
HOXC10	3226	genome.wustl.edu	37	12	54379758	54379758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017409.3	+1	reviewed	p.D239N	0.992	21	0%	25	36%	11	54.5%	probably_damaging(0.979)	tolerated(0.4)	neutral(0.438)	NULL
CBX5	23468	genome.wustl.edu	37	12	54645853	54645853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127321.1	-1	reviewed	p.D99A	1.000	245	0%	288	36.8%	15	60%	benign(0.009)	tolerated(0.5)	neutral(0.011)	NULL
HNRNPA1	3178	genome.wustl.edu	37	12	54675961	54675961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031157.2	+1	reviewed	p.D123Y	1.000	82	0%	114	37.7%	298	40.9%	possibly_damaging(0.779)	deleterious(0)	deleterious(0.736)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NEUROD4	58158	genome.wustl.edu	37	12	55420315	55420315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021191.2	+1	validated	p.V31A	0.984	62	0%	40	17.5%	0	-	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
NEUROD4	58158	genome.wustl.edu	37	12	55420775	55420775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021191.2	+1	validated	p.E184D	1.000	49	0%	30	16.7%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
NEUROD4	58158	genome.wustl.edu	37	12	55420874	55420874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021191.2	+1	validated	p.M217I	1.000	106	0%	88	29.5%	0	-	benign(0.005)	tolerated(0.16)	neutral(0.059)	NULL
OR9K2	441639	genome.wustl.edu	37	12	55524545	55524545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005243.1	+1	provisional	p.K331N	0.998	56	0%	13	69.2%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	superfamily_Family A G protein-coupled receptor-like
OR6C74	254783	genome.wustl.edu	37	12	55641164	55641164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005490.1	+1	provisional	p.F31L	0.025	261	0%	261	26.8%	0	-	benign(0)	tolerated(1)	-	superfamily_SSF81321
OR6C6	283365	genome.wustl.edu	37	12	55688354	55688354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005493.1	-1	provisional	p.K221N	0.001	110	0%	37	16.2%	0	-	possibly_damaging(0.871)	tolerated(0.27)	neutral(0.372)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C3	254786	genome.wustl.edu	37	12	55726238	55726238	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054104.1	+1	provisional	p.C252G	0.991	213	0%	153	26.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_SSF81321
OR10P1	121130	genome.wustl.edu	37	12	56031183	56031183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206899.1	+1	provisional	p.R170C	0.054	43	0%	43	41.9%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
RDH5	5959	genome.wustl.edu	37	12	56115037	56115037	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002905.3	+1	reviewed	p.S23	0.000	19	0%	36	30.6%	4	0%	-	-	-	NULL
MMP19	4327	genome.wustl.edu	37	12	56234912	56234912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002429.4	-1	reviewed	p.K94N	0.998	169	0%	160	21.9%	2	0%	possibly_damaging(0.937)	tolerated(0.11)	deleterious(0.655)	NULL
IKZF4	64375	genome.wustl.edu	37	12	56429076	56429076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022465.3	+1	validated	p.F573L	1.000	58	0%	61	24.6%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00355
ERBB3	2065	genome.wustl.edu	37	12	56482577	56482577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001982.2	+1	reviewed	p.S345L	0.999	105	0%	115	23.5%	17	35.2%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_L domain-like
ZC3H10	84872	genome.wustl.edu	37	12	56514922	56514922	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032786.1	+1	provisional	p.I192	0.966	39	0%	55	41.8%	9	33.3%	-	-	-	NULL
ESYT1	23344	genome.wustl.edu	37	12	56522299	56522299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015292.2	+1	validated	p.I66V	1.000	251	0%	382	30.6%	32	37.5%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
SMARCC2	6601	genome.wustl.edu	37	12	56565694	56565694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003075.3	-1	reviewed	p.N621H	1.000	28	0%	57	33.3%	62	33.8%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
ANKRD52	283373	genome.wustl.edu	37	12	56641862	56641862	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173595.3	-1	validated	p.G641	0.485	32	0%	55	34.5%	36	38.8%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
GLS2	27165	genome.wustl.edu	37	12	56874126	56874126	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013267.2	-1	reviewed	p.L76	0.971	120	0%	153	30.7%	1	0%	-	-	-	NULL
BAZ2A	11176	genome.wustl.edu	37	12	57004263	57004263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013449.3	-1	validated	p.R572Q	1.000	64	0%	63	33.3%	12	50%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
NACA	4666	genome.wustl.edu	37	12	57112936	57112936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113203.1	-1	validated	p.S793Y	0.001	71	0%	65	32.3%	0	-	unknown(0)	-	-	NULL
NACA	4666	genome.wustl.edu	37	12	57114367	57114367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113203.1	-1	validated	p.S316Y	0.022	111	0%	79	27.8%	1	100%	unknown(0)	tolerated(0.15)	-	NULL
MYO1A	4640	genome.wustl.edu	37	12	57437788	57437788	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005379.2	-1	reviewed	e9-1	0.992	148	0%	84	35.7%	0	-	-	-	-	-
TMEM194A	23306	genome.wustl.edu	37	12	57454642	57454642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130963.1	-1	validated	p.R356Q	0.822	169	0%	75	33.3%	8	37.5%	benign(0.055)	tolerated(0.76)	neutral(0.005)	HMMPfam_DUF2215
GLI1	2735	genome.wustl.edu	37	12	57858600	57858600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005269.2	+1	reviewed	p.R113Q	1.000	120	0%	165	34.5%	2	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
GLI1	2735	genome.wustl.edu	37	12	57861838	57861838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005269.2	+1	reviewed	p.R380Q	0.996	25	0%	45	26.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GLI1	2735	genome.wustl.edu	37	12	57865427	57865427	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005269.2	+1	reviewed	p.S968	0.488	50	2%	69	24.6%	2	0%	-	-	-	NULL
ARHGAP9	64333	genome.wustl.edu	37	12	57867453	57867453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032496.2	-1	reviewed	p.E653*	0.981	189	0%	338	34.6%	19	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
MARS	4141	genome.wustl.edu	37	12	57910042	57910042	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004990.2	+1	reviewed	p.P826	0.822	83	0%	186	38.2%	213	45%	-	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57957931	57957931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004984.2	+1	reviewed	p.R111Q	1.000	78	0%	58	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF5A	3798	genome.wustl.edu	37	12	57965952	57965952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004984.2	+1	reviewed	p.L491M	0.998	97	0%	69	26.1%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
DTX3	196403	genome.wustl.edu	37	12	58000666	58000666	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000413885	+1	known	e2-1	1.000	33	0%	73	24.7%	35	28.5%	-	-	-	-
DTX3	196403	genome.wustl.edu	37	12	58001180	58001180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000413885	+1	known	p.E181D	1.000	19	0%	48	29.2%	24	25%	benign(0.013)	tolerated(0.15)	neutral(0.241)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
ENSG00000247039	0	genome.wustl.edu	37	12	58013886	58013886	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501036	-1	known	NULL	0.002	41	0%	47	34%	0	-	-	-	-	-
ENSG00000247039	0	genome.wustl.edu	37	12	58014652	58014652	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501036	-1	known	NULL	0.000	22	0%	38	31.6%	1	0%	-	-	-	-
TSFM	10102	genome.wustl.edu	37	12	58190019	58190019	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005726.5	+1	reviewed	p.F211I	0.995	43	0%	68	11.8%	72	18%	benign(0.002)	tolerated(0.8)	neutral(0.001)	HMMPfam_EF_TS,superfamily_Elongation factor Ts (EF-Ts) dimerisation domain
SLC16A7	9194	genome.wustl.edu	37	12	60168775	60168775	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004731.3	+1	provisional	p.V233	0.598	120	0%	32	18.8%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ENSG00000250314	0	genome.wustl.edu	37	12	63398388	63398388	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000514535	-1	known	NULL	0.617	26	0%	29	41.4%	0	-	-	-	-	-
DPY19L2	283417	genome.wustl.edu	37	12	63991612	63991612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173812.4	-1	validated	p.E480*	0.973	56	0%	66	28.8%	0	-	-	-	-	HMMPfam_DUF2211
DPY19L2	283417	genome.wustl.edu	37	12	64017824	64017824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173812.4	-1	validated	p.L317I	0.997	70	0%	40	35%	0	-	probably_damaging(0.986)	tolerated(0.32)	neutral(0.459)	HMMPfam_DUF2211
TMEM5	10329	genome.wustl.edu	37	12	64202701	64202701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014254.1	+1	provisional	p.K387N	0.994	99	0%	46	26.1%	12	50%	possibly_damaging(0.741)	deleterious(0.04)	deleterious(0.621)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64456706	64456706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020762.2	+1	validated	p.L271I	1.000	129	0%	93	29%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64480785	64480785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020762.2	+1	validated	p.R472I	1.000	202	0%	83	28.9%	1	0%	benign(0.148)	deleterious(0.02)	neutral(0.396)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64491125	64491125	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020762.2	+1	validated	p.E595*	1.000	97	0%	86	39.5%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
XPOT	11260	genome.wustl.edu	37	12	64815202	64815202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007235.3	+1	reviewed	p.S344Y	1.000	164	0%	103	24.3%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
XPOT	11260	genome.wustl.edu	37	12	64829443	64829443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007235.3	+1	reviewed	p.H908N	1.000	217	0%	101	24.8%	71	36.6%	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
TBK1	29110	genome.wustl.edu	37	12	64858221	64858221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013254.2	+1	reviewed	p.F112L	1.000	328	0%	193	36.8%	11	54.5%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TBK1	29110	genome.wustl.edu	37	12	64875650	64875650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013254.2	+1	reviewed	p.L281I	1.000	106	0%	42	26.2%	11	54.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GNS	2799	genome.wustl.edu	37	12	65137006	65137006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002076.3	-1	reviewed	p.S236L	0.999	104	0%	74	35.1%	58	5.1%	possibly_damaging(0.595)	deleterious(0.01)	deleterious(0.612)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
IRAK3	11213	genome.wustl.edu	37	12	66638338	66638338	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007199.2	+1	reviewed	p.H320	0.170	97	0%	107	35.5%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HELB	92797	genome.wustl.edu	37	12	66703945	66703945	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033647.2	+1	reviewed	p.E413*	0.944	85	0%	65	36.9%	0	-	-	-	-	NULL
CAND1	55832	genome.wustl.edu	37	12	67696164	67696164	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018448.3	+1	validated	p.A354	0.953	120	0%	40	32.5%	132	46.2%	-	-	-	superfamily_ARM repeat
MDM1	56890	genome.wustl.edu	37	12	68710012	68710012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017440.4	-1	reviewed	p.A343S	1.000	135	0%	62	30.6%	8	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MDM1	56890	genome.wustl.edu	37	12	68715320	68715320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017440.4	-1	reviewed	p.K297I	1.000	396	0%	258	30.2%	5	80%	possibly_damaging(0.906)	deleterious(0.02)	deleterious(0.742)	NULL
MDM1	56890	genome.wustl.edu	37	12	68716947	68716947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017440.4	-1	reviewed	p.R236I	1.000	312	0%	198	38.9%	4	25%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
NUP107	57122	genome.wustl.edu	37	12	69109464	69109464	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020401.2	+1	reviewed	p.E343*	1.000	223	0%	106	25.5%	20	5%	-	-	-	HMMPfam_Nup84_Nup100
CPM	1368	genome.wustl.edu	37	12	69252802	69252802	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005502.2	-1	reviewed	p.V330	0.993	190	0%	84	27.4%	11	18.1%	-	-	-	HMMSmart_Zn_pept,superfamily_CarboxypepD_reg
CPSF6	11052	genome.wustl.edu	37	12	69651608	69651608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007007.2	+1	validated	p.R206H	1.000	108	0%	69	42%	93	41.9%	unknown(0)	tolerated(0.13)	-	superfamily_RNA-binding domain RBD
CCT2	10576	genome.wustl.edu	37	12	69985881	69985881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006431.2	+1	reviewed	p.R231Q	1.000	117	0%	130	32.3%	44	9%	possibly_damaging(0.786)	deleterious(0.01)	deleterious(0.700)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
CCT2	10576	genome.wustl.edu	37	12	69991468	69991468	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006431.2	+1	reviewed	p.E385*	1.000	129	0%	105	33.3%	182	4.9%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
PTPRB	5787	genome.wustl.edu	37	12	70946664	70946664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001109754.1	-1	reviewed	p.K1760N	1.000	143	0%	66	27.3%	1	0%	probably_damaging(0.968)	tolerated(0.23)	neutral(0.451)	HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRB	5787	genome.wustl.edu	37	12	70953215	70953215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001109754.1	-1	reviewed	p.R1541H	0.987	116	0%	52	26.9%	2	0%	benign(0.011)	tolerated(0.58)	neutral(0.005)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRR	5801	genome.wustl.edu	37	12	71139848	71139848	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002849.2	-1	reviewed	p.E253*	1.000	204	0%	65	20%	0	-	-	-	-	NULL
TSPAN8	7103	genome.wustl.edu	37	12	71533507	71533507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004616.2	-1	reviewed	p.R82H	0.990	90	2.2%	51	47.1%	4	25%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Tetraspannin,PatternScan_TM4_1
ZFC3H1	196441	genome.wustl.edu	37	12	72037952	72037952	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144982.4	-1	validated	p.R476*	1.000	477	0.2%	352	26.7%	3	33.3%	-	-	-	NULL
TMEM19	55266	genome.wustl.edu	37	12	72090248	72090248	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018279.3	+1	validated	p.N93H	1.000	165	0%	156	33.3%	10	40%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DUF92
TPH2	121278	genome.wustl.edu	37	12	72332806	72332806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173353.3	+1	reviewed	p.A14T	1.000	107	0%	79	39.2%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
TPH2	121278	genome.wustl.edu	37	12	72372832	72372832	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173353.3	+1	reviewed	p.I302	0.830	61	0%	27	44.4%	0	-	-	-	-	HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase
TPH2	121278	genome.wustl.edu	37	12	72425419	72425419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173353.3	+1	reviewed	p.D473N	1.000	125	0%	96	44.8%	0	-	possibly_damaging(0.767)	tolerated(0.06)	deleterious(0.607)	HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase
CAPS2	84698	genome.wustl.edu	37	12	75706647	75706647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032606.3	-1	validated	p.M233V	1.000	218	0%	209	14.4%	0	-	benign(0.138)	deleterious(0)	neutral(0.456)	NULL
CAPS2	84698	genome.wustl.edu	37	12	75710176	75710176	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032606.3	-1	validated	p.T188	0.768	265	0%	185	16.2%	4	25%	-	-	-	NULL
GLIPR1	11010	genome.wustl.edu	37	12	75892747	75892747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006851.2	+1	reviewed	p.L264I	0.000	156	0%	75	20%	14	14.2%	benign(0.238)	tolerated(0.28)	neutral(0.056)	NULL
NAP1L1	4673	genome.wustl.edu	37	12	76447595	76447595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004537.4	-1	reviewed	p.S242F	1.000	169	0%	102	31.4%	344	48.2%	possibly_damaging(0.776)	deleterious(0.03)	deleterious(0.654)	HMMPfam_NAP
E2F7	144455	genome.wustl.edu	37	12	77449698	77449698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203394.2	-1	validated	p.E102D	1.000	195	0%	142	27.5%	3	100%	probably_damaging(0.958)	tolerated(0.2)	neutral(0.451)	NULL
NAV3	89795	genome.wustl.edu	37	12	78392174	78392174	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014903.4	+1	validated	p.A266	0.992	67	0%	83	38.6%	0	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78513083	78513083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014903.4	+1	validated	p.R1036I	1.000	62	0%	51	45.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAV3	89795	genome.wustl.edu	37	12	78562559	78562559	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014903.4	+1	validated	p.E1632*	1.000	62	0%	28	17.9%	1	0%	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78582402	78582402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014903.4	+1	validated	p.R1945Q	1.000	99	0%	51	37.3%	0	-	probably_damaging(0.997)	tolerated(0.24)	deleterious(0.504)	NULL
NAV3	89795	genome.wustl.edu	37	12	78591179	78591179	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014903.4	+1	validated	p.K2126N	1.000	182	0%	48	27.1%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
NAV3	89795	genome.wustl.edu	37	12	78604280	78604280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014903.4	+1	validated	p.L2359I	1.000	70	0%	32	31.2%	0	-	benign(0.253)	tolerated(0.16)	neutral(0.085)	NULL
LOC338756	338756	genome.wustl.edu	37	12	79952698	79952698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001714544.1	+1	model	p.S83Y	0.155	9	0.000	20	0.250	0	-	-	-	-	NULL
LOC338756	338756	genome.wustl.edu	37	12	79952852	79952852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001714544.1	+1	model	p.F134L	0.062	5	0.000	14	0.357	0	-	-	-	-	NULL
PPP1R12A	4659	genome.wustl.edu	37	12	80226210	80226210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143885.1	-1	reviewed	p.Q183H	1.000	135	0%	59	28.8%	9	44.4%	benign(0.158)	tolerated(0.06)	neutral(0.337)	superfamily_Ankyrin repeat
OTOGL	283310	genome.wustl.edu	37	12	80623116	80623116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343203.1	+1	model	p.E131G	1.000	290	0%	145	30.3%	0	-	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80626673	80626673	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343203.1	+1	model	p.L146V	1.000	98	0%	52	38.5%	0	-	benign(0.044)	tolerated(0.82)	neutral(0.003)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80650220	80650220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343203.1	+1	model	p.N505S	1.000	119	0%	131	32.8%	0	-	benign(0.02)	tolerated(0.19)	neutral(0.051)	HMMPfam_VWD,HMMSmart_SM00216
OTOGL	283310	genome.wustl.edu	37	12	80749675	80749675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343203.1	+1	model	p.E1815A	1.000	114	0%	61	26.2%	0	-	possibly_damaging(0.467)	deleterious(0.01)	deleterious(0.559)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	80878349	80878349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000266688	+1	known	p.I442L	0.013	87	0%	57	31.6%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRQ	374462	genome.wustl.edu	37	12	81007564	81007564	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145026.1	+1	validated	p.S1554L	0.373	80	0%	33	30.3%	0	-	-	-	-	NULL
PTPRQ	374462	genome.wustl.edu	37	12	81026024	81026024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000266688	+1	known	p.I1914V	1.000	238	0%	99	36.4%	0	-	benign(0.003)	tolerated(0.69)	neutral(0.002)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	81062886	81062886	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000266688	+1	known	p.L2098*	1.000	101	0%	34	44.1%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
MYF6	4618	genome.wustl.edu	37	12	81101537	81101537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002469.2	+1	reviewed	p.F13L	1.000	95	0%	178	38.2%	0	-	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	HMMPfam_Basic,HMMSmart_SM00520
MYF6	4618	genome.wustl.edu	37	12	81101837	81101837	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002469.2	+1	reviewed	p.F113	1.000	35	0%	65	29.2%	0	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MYF6	4618	genome.wustl.edu	37	12	81101898	81101898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002469.2	+1	reviewed	p.L134M	1.000	23	0%	53	26.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MYF5	4617	genome.wustl.edu	37	12	81110959	81110959	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005593.2	+1	validated	p.F39	0.998	20	0%	21	33.3%	0	-	-	-	-	HMMPfam_Basic,HMMSmart_BASIC
PPFIA2	8499	genome.wustl.edu	37	12	81839369	81839369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003625.2	-1	reviewed	p.S179Y	1.000	162	0%	150	36.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81851557	81851557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003625.2	-1	reviewed	p.R131I	1.000	416	0%	113	25.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85255518	85255518	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182767.4	-1	validated	p.R696*	0.998	132	0%	51	41.2%	0	-	-	-	-	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85285873	85285873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182767.4	-1	validated	p.K9N	1.000	226	0%	169	35.5%	0	-	possibly_damaging(0.898)	deleterious(0.01)	deleterious(0.760)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85285892	85285892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182767.4	-1	validated	p.K3T	1.000	206	0%	151	11.9%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
LRRIQ1	84125	genome.wustl.edu	37	12	85492274	85492274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079910.1	+1	validated	p.E1010G	0.998	142	0%	33	42.4%	0	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	superfamily_RNI-like
MGAT4C	25834	genome.wustl.edu	37	12	86373347	86373347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013244.3	-1	validated	p.P386Q	1.000	81	0%	36	36.1%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
MGAT4C	25834	genome.wustl.edu	37	12	86373944	86373944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013244.3	-1	validated	p.R187I	1.000	76	0%	35	34.3%	0	-	benign(0.325)	tolerated(0.05)	neutral(0.447)	HMMPfam_Glyco_transf_54
C12orf29	91298	genome.wustl.edu	37	12	88436685	88436685	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009894.2	+1	validated	p.E98*	0.962	81	0%	62	25.8%	5	20%	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88505548	88505548	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025114.3	-1	reviewed	p.E714*	1.000	135	0%	130	35.4%	1	0%	-	-	-	NULL
TMTC3	160418	genome.wustl.edu	37	12	88547113	88547113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181783.3	+1	reviewed	p.R79C	1.000	133	0%	94	30.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP2B1	490	genome.wustl.edu	37	12	89985005	89985005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001682.2	-1	reviewed	p.S1140L	1.000	137	0%	67	22.4%	25	36%	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
ATP2B1	490	genome.wustl.edu	37	12	89997957	89997957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001682.2	-1	reviewed	p.A870D	1.000	159	0%	44	9.1%	29	20.6%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_SSF81665
DCN	1634	genome.wustl.edu	37	12	91558441	91558441	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001920.3	-1	reviewed	p.Q89*	1.000	243	0%	173	30.6%	73	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PLEKHG7	440107	genome.wustl.edu	37	12	93155550	93155550	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004330.2	+1	validated	p.V241	0.978	221	0%	125	30.4%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
EEA1	8411	genome.wustl.edu	37	12	93175873	93175873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003566.3	-1	validated	p.L1063F	1.000	136	0%	43	30.2%	1	100%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
EEA1	8411	genome.wustl.edu	37	12	93205117	93205117	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003566.3	-1	validated	p.E713*	1.000	76	0%	60	25%	1	0%	-	-	-	NULL
EEA1	8411	genome.wustl.edu	37	12	93226419	93226419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003566.3	-1	validated	p.Q375K	0.833	169	0%	310	34.5%	2	50%	probably_damaging(0.973)	tolerated(0.19)	neutral(0.464)	NULL
UBE2N	7334	genome.wustl.edu	37	12	93805035	93805035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003348.3	-1	reviewed	p.K24R	1.000	74	0%	35	31.4%	161	46.5%	possibly_damaging(0.582)	tolerated(0.07)	deleterious(0.519)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
PLXNC1	10154	genome.wustl.edu	37	12	94562938	94562938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005761.1	+1	provisional	p.D358N	0.001	153	0%	97	34%	10	60%	benign(0.001)	tolerated(0.54)	neutral(0.007)	superfamily_Sema
PLXNC1	10154	genome.wustl.edu	37	12	94676100	94676100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005761.1	+1	provisional	p.E1268K	1.000	62	0%	50	50%	12	66.6%	benign(0.067)	deleterious(0.04)	neutral(0.353)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
CCDC41	51134	genome.wustl.edu	37	12	94703806	94703806	+	Missense_Mutation	SNP	C	C	T	rs192349282	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042399.1	-1	validated	p.R630Q	1.000	224	0%	49	30.6%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMCC3	57458	genome.wustl.edu	37	12	94965272	94965272	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020698.2	-1	validated	p.I458R	0.793	106	0%	83	28.9%	2	0%	possibly_damaging(0.906)	deleterious(0.02)	deleterious(0.742)	HMMPfam_Tmemb_cc2
FGD6	55785	genome.wustl.edu	37	12	95604559	95604559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018351.3	-1	validated	p.K167N	0.013	230	0%	236	33.1%	3	66.6%	benign(0.344)	deleterious(0)	deleterious(0.553)	NULL
VEZT	55591	genome.wustl.edu	37	12	95656699	95656699	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017599.3	+1	validated	p.L92	0.796	101	0%	72	34.7%	17	29.4%	-	-	-	NULL
USP44	84101	genome.wustl.edu	37	12	95912036	95912036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042403.1	-1	validated	p.R678Q	1.000	93	0%	61	31.1%	2	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Cysteine proteinases
USP44	84101	genome.wustl.edu	37	12	95927233	95927233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042403.1	-1	validated	p.I267T	0.010	233	0%	161	28%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	superfamily_Cysteine proteinases
CCDC38	120935	genome.wustl.edu	37	12	96312708	96312708	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182496.2	-1	validated	p.I28	0.990	299	0%	195	26.7%	0	-	-	-	-	NULL
AMDHD1	144193	genome.wustl.edu	37	12	96346512	96346512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152435.2	+1	validated	p.A52V	1.000	163	0%	231	28.6%	0	-	benign(0.062)	tolerated(0.51)	neutral(0.013)	superfamily_Composite domain of metallo-dependent hydrolases
AMDHD1	144193	genome.wustl.edu	37	12	96346553	96346553	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152435.2	+1	validated	p.E66*	0.948	181	0%	225	12.4%	0	-	-	-	-	superfamily_Composite domain of metallo-dependent hydrolases
HAL	3034	genome.wustl.edu	37	12	96387243	96387243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002108.2	-1	reviewed	p.R192H	0.991	97	0%	131	33.6%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_PAL,superfamily_L-Aspartase-like
HAL	3034	genome.wustl.edu	37	12	96387603	96387603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002108.2	-1	reviewed	p.I166M	1.000	221	0%	284	34.9%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_PAL,superfamily_L-Aspartase-like
C12orf63	374467	genome.wustl.edu	37	12	97051678	97051678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198520.2	+1	validated	p.E132K	1.000	119	0%	43	32.6%	0	-	unknown(0)	tolerated(0.15)	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97147573	97147573	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198520.2	+1	validated	p.S1004	0.001	174	0%	66	27.3%	0	-	-	-	-	NULL
C12orf63	374467	genome.wustl.edu	37	12	97150278	97150278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198520.2	+1	validated	p.S1053I	0.000	167	0%	71	14.1%	0	-	unknown(0)	tolerated(0.17)	-	NULL
NEDD1	121441	genome.wustl.edu	37	12	97339584	97339584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135175.1	+1	validated	p.R597S	0.991	156	0%	52	36.5%	21	19%	benign(0.271)	tolerated(0.57)	neutral(0.035)	NULL
ENSG00000206899	0	genome.wustl.edu	37	12	98115580	98115580	+	RNA	SNP	C	C	T	rs186124988	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384172	+1	known	NULL	0.010	100	0%	153	19.6%	2	0%	-	-	-	-
ENSG00000227825	0	genome.wustl.edu	37	12	98849267	98849267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000370696	-1	known	p.E211K	0.151	102	0%	136	37.5%	0	-	-	-	-	NULL
SLC25A3	5250	genome.wustl.edu	37	12	98992403	98992403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005888.3	+1	reviewed	p.R189Q	1.000	108	0%	166	30.1%	819	42.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
IKBIP	121457	genome.wustl.edu	37	12	99007832	99007832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201612.1	-1	provisional	p.S195Y	0.972	117	0%	92	37%	2	0%	possibly_damaging(0.887)	deleterious(0.02)	deleterious(0.730)	NULL
IKBIP	121457	genome.wustl.edu	37	12	99020288	99020288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153687.2	-1	provisional	p.T185I	1.000	272	0%	206	31.6%	2	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
IKBIP	121457	genome.wustl.edu	37	12	99020388	99020388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153687.2	-1	provisional	p.F152L	1.000	170	0%	111	39.6%	3	66.6%	probably_damaging(0.985)	tolerated(1)	neutral(0.432)	NULL
APAF1	317	genome.wustl.edu	37	12	99052985	99052985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181861.1	+1	reviewed	p.K192E	1.000	156	0%	262	23.3%	2	50%	possibly_damaging(0.902)	tolerated(0.28)	neutral(0.388)	HMMPfam_NB-ARC,superfamily_WD40 repeat-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
APAF1	317	genome.wustl.edu	37	12	99074172	99074172	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181861.1	+1	reviewed	p.K680Q	1.000	120	0%	168	32.7%	3	66.6%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
APAF1	317	genome.wustl.edu	37	12	99102435	99102435	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181861.1	+1	reviewed	p.E932*	1.000	200	0%	115	25.2%	4	25%	-	-	-	NULL
ANKS1B	56899	genome.wustl.edu	37	12	99225903	99225903	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152788.3	-1	validated	p.I930	1.000	85	0%	51	23.5%	1	0%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
ANKS1B	56899	genome.wustl.edu	37	12	100048893	100048893	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152788.3	-1	validated	p.L408F	0.976	201	0%	99	31.3%	1	100%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
ANKS1B	56899	genome.wustl.edu	37	12	100166798	100166798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152788.3	-1	validated	p.S344P	1.000	243	0%	184	27.7%	3	33.3%	benign(0.088)	tolerated(0.72)	neutral(0.008)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100444974	100444974	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015054.1	-1	validated	p.N1150K	0.453	169	0%	88	40.9%	11	45.4%	benign(0.053)	tolerated(0.23)	neutral(0.045)	NULL
DEPDC4	120863	genome.wustl.edu	37	12	100657537	100657537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152317.2	-1	provisional	p.D98N	0.997	106	0%	244	28.3%	4	50%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
SLC17A8	246213	genome.wustl.edu	37	12	100784812	100784812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139319.2	+1	reviewed	p.G130S	1.000	249	0%	77	11.7%	0	-	unknown(0)	tolerated(0.23)	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC17A8	246213	genome.wustl.edu	37	12	100813706	100813706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139319.2	+1	reviewed	p.E513D	1.000	70	0%	59	30.5%	0	-	possibly_damaging(0.45)	deleterious(0.01)	deleterious(0.553)	superfamily_MFS general substrate transporter
NR1H4	9971	genome.wustl.edu	37	12	100930756	100930756	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005123.2	+1	provisional	p.F284V	1.000	67	0%	36	30.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Nuclear receptor ligand-binding domain
ANO4	121601	genome.wustl.edu	37	12	101333162	101333162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178826.3	+1	validated	p.S42Y	1.000	203	0%	86	32.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ANO4	121601	genome.wustl.edu	37	12	101436146	101436146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178826.3	+1	validated	p.A317P	1.000	160	0%	127	19.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANO4	121601	genome.wustl.edu	37	12	101510552	101510552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178826.3	+1	validated	p.S814L	1.000	160	0%	85	23.5%	2	0%	benign(0.01)	tolerated(0.35)	neutral(0.021)	HMMPfam_DUF590
SLC5A8	160728	genome.wustl.edu	37	12	101555755	101555755	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145913.3	-1	validated	p.T543P	0.997	94	0%	62	41.9%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
UTP20	27340	genome.wustl.edu	37	12	101727147	101727147	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014503.2	+1	validated	p.I1162	1.000	136	0%	87	29.9%	3	33.3%	-	-	-	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101750395	101750395	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014503.2	+1	validated	p.R1820*	1.000	103	0%	69	31.9%	9	11.1%	-	-	-	superfamily_ARM repeat
UTP20	27340	genome.wustl.edu	37	12	101761709	101761709	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014503.2	+1	validated	p.P2113	0.678	188	0.5%	136	22.8%	18	72.2%	-	-	-	superfamily_ARM repeat
SPIC	121599	genome.wustl.edu	37	12	101873448	101873448	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152323.1	+1	provisional	p.P62	0.001	95	0%	74	29.7%	1	0%	-	-	-	NULL
SPIC	121599	genome.wustl.edu	37	12	101876591	101876591	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152323.1	+1	provisional	p.F78V	0.319	149	0%	108	20.4%	0	-	benign(0.059)	tolerated(0.45)	neutral(0.016)	NULL
SPIC	121599	genome.wustl.edu	37	12	101876620	101876620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152323.1	+1	provisional	p.Q87H	0.980	153	0%	112	41.1%	0	-	possibly_damaging(0.837)	tolerated(0.09)	deleterious(0.616)	NULL
MYBPC1	4604	genome.wustl.edu	37	12	102030482	102030482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002465.2	+1	validated	p.D214G	1.000	137	0.7%	191	42.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MYBPC1	4604	genome.wustl.edu	37	12	102071104	102071104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002465.2	+1	validated	p.S1014Y	1.000	167	0%	110	34.5%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GNPTAB	79158	genome.wustl.edu	37	12	102158198	102158198	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024312.4	-1	reviewed	p.E833*	0.002	303	0%	169	34.3%	5	0%	-	-	-	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102174052	102174052	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024312.4	-1	reviewed	p.E217*	1.000	294	0%	95	26.3%	4	0%	-	-	-	NULL
C12orf73	728568	genome.wustl.edu	37	12	104345308	104345308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135570.1	-1	validated	p.L70R	0.000	235	0%	253	35.6%	16	37.5%	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	NULL
GLT8D2	83468	genome.wustl.edu	37	12	104396965	104396965	+	Missense_Mutation	SNP	C	C	T	rs181331226	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031302.3	-1	provisional	p.A78T	0.999	137	0%	57	28.1%	6	0%	possibly_damaging(0.79)	deleterious(0.02)	deleterious(0.679)	HMMPfam_Glyco_transf_8,superfamily_SSF53448
GLT8D2	83468	genome.wustl.edu	37	12	104396981	104396981	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031302.3	-1	provisional	p.I72	1.000	153	0%	69	33.3%	1	0%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_SSF53448
EID3	493861	genome.wustl.edu	37	12	104698016	104698016	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008394.1	+1	provisional	p.E102*	0.999	102	0%	157	30.6%	2	100%	-	-	-	HMMPfam_Nse4
ENSG00000179821	0	genome.wustl.edu	37	12	105371177	105371177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000312876	-1	known	p.K204N	1.000	13	0%	18	38.9%	0	-	-	-	-	HMMPfam_Filament
KIAA1033	23325	genome.wustl.edu	37	12	105534678	105534678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015275.1	+1	validated	p.K521R	1.000	97	0%	37	40.5%	8	37.5%	probably_damaging(0.991)	tolerated(0.22)	deleterious(0.486)	NULL
KIAA1033	23325	genome.wustl.edu	37	12	105546151	105546151	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015275.1	+1	validated	p.R894*	1.000	89	0%	40	30%	7	14.2%	-	-	-	NULL
APPL2	55198	genome.wustl.edu	37	12	105569833	105569833	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018171.3	-1	validated	p.E614*	1.000	146	0%	75	25.3%	10	50%	-	-	-	superfamily_SSF50729
APPL2	55198	genome.wustl.edu	37	12	105570747	105570747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018171.3	-1	validated	p.K573N	1.000	178	0%	85	28.2%	11	9%	benign(0.25)	tolerated(0.12)	neutral(0.286)	HMMPfam_PID,superfamily_SSF50729
NUAK1	9891	genome.wustl.edu	37	12	106532359	106532359	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014840.2	-1	validated	p.E25*	0.651	19	0%	27	40.7%	5	60%	-	-	-	NULL
CKAP4	10970	genome.wustl.edu	37	12	106632898	106632898	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006825.3	-1	validated	p.E571	0.987	68	0%	146	24%	264	48.1%	-	-	-	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106729822	106729822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152772.1	+1	provisional	p.D325N	1.000	60	0%	34	35.3%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tcp11
RIC8B	55188	genome.wustl.edu	37	12	107236590	107236590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018157.2	+1	validated	p.D354Y	1.000	114	0%	55	23.6%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold,HMMPfam_Ric8
MTERFD3	80298	genome.wustl.edu	37	12	107372085	107372085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033050.1	-1	validated	p.F136L	1.000	95	0%	73	27.4%	4	75%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_mTERF,HMMSmart_Mterf
PRDM4	11108	genome.wustl.edu	37	12	108145733	108145733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012406.3	-1	reviewed	p.E195D	1.000	105	0%	98	21.4%	27	37%	benign(0.39)	tolerated(0.23)	neutral(0.167)	NULL
WSCD2	9671	genome.wustl.edu	37	12	108634209	108634209	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014653.2	+1	validated	p.F411	1.000	50	0%	29	31%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
WSCD2	9671	genome.wustl.edu	37	12	108642000	108642000	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014653.2	+1	validated	p.L526	0.354	44	0%	38	26.3%	9	33.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CMKLR1	1240	genome.wustl.edu	37	12	108685972	108685972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142343.1	-1	validated	p.K256N	1.000	148	0%	114	40.4%	17	0%	benign(0.024)	tolerated(0.36)	neutral(0.021)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SART3	9733	genome.wustl.edu	37	12	108917356	108917356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014706.3	-1	reviewed	p.S924R	0.001	38	0%	60	40%	96	45.8%	possibly_damaging(0.471)	deleterious(0.04)	deleterious(0.504)	NULL
CORO1C	23603	genome.wustl.edu	37	12	109072163	109072163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014325.2	-1	reviewed	p.R68Q	1.000	58	0%	40	22.5%	66	27.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ACACB	32	genome.wustl.edu	37	12	109577850	109577850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093.3	+1	reviewed	p.V214I	0.000	38	0%	34	23.5%	0	-	benign(0.011)	tolerated(0.13)	neutral(0.253)	NULL
ACACB	32	genome.wustl.edu	37	12	109629526	109629526	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093.3	+1	reviewed	p.I751	0.200	118	0%	109	34.9%	0	-	-	-	-	HMMPfam_Biotin_carb_C,superfamily_Rudiment single hybrid motif
ACACB	32	genome.wustl.edu	37	12	109670597	109670597	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093.3	+1	reviewed	p.F1375	0.972	87	0%	78	32.1%	4	25%	-	-	-	HMMPfam_ACC_central
ACACB	32	genome.wustl.edu	37	12	109673428	109673428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093.3	+1	reviewed	p.F1474L	1.000	293	0%	250	33.2%	5	60%	benign(0.037)	tolerated(0.09)	neutral(0.298)	HMMPfam_ACC_central
ACACB	32	genome.wustl.edu	37	12	109692111	109692111	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093.3	+1	reviewed	p.R2046	1.000	177	0%	118	33.1%	5	80%	-	-	-	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
FOXN4	121643	genome.wustl.edu	37	12	109723218	109723218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_213596.2	-1	validated	p.K264N	1.000	95	0%	198	34.3%	0	-	unknown(0)	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
MMAB	326625	genome.wustl.edu	37	12	110006605	110006605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052845.3	-1	reviewed	p.G87E	1.000	202	0%	289	31.5%	21	52.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cob_adeno_trans,superfamily_Cobalamin adenosyltransferase-like
TRPV4	59341	genome.wustl.edu	37	12	110230202	110230202	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021625.4	-1	reviewed	p.L619	0.999	42	0%	80	30%	4	50%	-	-	-	HMMPfam_Ion_trans
TRPV4	59341	genome.wustl.edu	37	12	110231397	110231397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021625.4	-1	reviewed	p.D531E	1.000	53	0%	78	17.9%	3	0%	benign(0.351)	tolerated(0.49)	neutral(0.121)	NULL
TCHP	84260	genome.wustl.edu	37	12	110352341	110352341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143852.1	+1	validated	p.R410Q	0.000	102	0%	162	32.7%	20	50%	benign(0.005)	tolerated(0.44)	neutral(0.013)	NULL
GIT2	9815	genome.wustl.edu	37	12	110370918	110370918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_057169.3	-1	reviewed	p.K715N	1.000	109	0%	87	32.2%	12	25%	benign(0.019)	tolerated(0.37)	neutral(0.020)	NULL
FAM216A	29902	genome.wustl.edu	37	12	110910887	110910887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013300.2	+1	validated	p.A50T	1.000	120	0%	261	26.1%	1	0%	possibly_damaging(0.86)	-	-	NULL
RAD9B	144715	genome.wustl.edu	37	12	110944442	110944442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152442.3	+1	validated	p.R111I	0.043	139	0%	200	29%	0	-	benign(0.282)	tolerated(0.16)	neutral(0.146)	HMMPfam_Rad9,superfamily_DNA clamp
PPTC7	160760	genome.wustl.edu	37	12	110976079	110976079	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139283.1	-1	provisional	e5-1	1.000	102	0%	98	34.7%	0	-	-	-	-	-
TCTN1	79600	genome.wustl.edu	37	12	111085118	111085118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082538.2	+1	reviewed	p.L538I	0.021	158	0%	125	29.6%	12	25%	benign(0.044)	tolerated(0.54)	neutral(0.010)	NULL
CCDC63	160762	genome.wustl.edu	37	12	111317838	111317838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152591.1	+1	provisional	p.E206D	0.995	98	0%	64	15.6%	0	-	benign(0.004)	tolerated(0.57)	neutral(0.006)	NULL
CUX2	23316	genome.wustl.edu	37	12	111655705	111655705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015267.3	+1	validated	p.E62D	1.000	45	0%	46	28.3%	0	-	benign(0.104)	tolerated(0.17)	neutral(0.067)	NULL
ATXN2	6311	genome.wustl.edu	37	12	111926495	111926495	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002973.3	-1	reviewed	p.K835N	0.998	201	0%	134	29.9%	21	57.1%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ATXN2	6311	genome.wustl.edu	37	12	111990713	111990713	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002973.3	-1	reviewed	p.P299	0.996	148	0%	75	38.7%	6	33.3%	-	-	-	superfamily_Sm-like ribonucleoproteins
ATXN2	6311	genome.wustl.edu	37	12	111992008	111992008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002973.3	-1	reviewed	p.G261E	1.000	76	0%	39	23.1%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C12orf51	283450	genome.wustl.edu	37	12	112608942	112608942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001109662.2	-1	validated	p.A3549T	0.978	87	0%	139	30.2%	31	9.6%	benign(0.017)	-	-	NULL
C12orf51	283450	genome.wustl.edu	37	12	112691862	112691862	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000311694	-1	known	p.R607Q	0.628	109	0.9%	55	32.7%	5	20%	-	-	-	NULL
PTPN11	5781	genome.wustl.edu	37	12	112888149	112888149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002834.3	+1	reviewed	p.K55N	1.000	149	0%	105	31.4%	23	47.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
RPH3A	22895	genome.wustl.edu	37	12	113285591	113285591	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143854.1	+1	validated	p.I58	1.000	70	0%	46	30.4%	0	-	-	-	-	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger
RPH3A	22895	genome.wustl.edu	37	12	113332453	113332453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143854.1	+1	validated	p.E616K	1.000	80	0%	54	29.6%	0	-	possibly_damaging(0.609)	tolerated(0.1)	deleterious(0.497)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OAS1	4938	genome.wustl.edu	37	12	113346492	113346492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001032409.1	+1	reviewed	p.R111K	0.000	105	0%	61	31.1%	29	24.1%	benign(0.003)	tolerated(0.31)	neutral(0.027)	superfamily_Nucleotidyltransferase
OAS2	4939	genome.wustl.edu	37	12	113424998	113424998	+	Silent	SNP	G	G	A	rs190356894	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016817.2	+1	reviewed	p.T111	0.000	82	0%	51	41.2%	23	52.1%	-	-	-	superfamily_Nucleotidyltransferase
RASAL1	8437	genome.wustl.edu	37	12	113554958	113554958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004658.1	-1	reviewed	p.F217L	0.969	60	0%	116	36.2%	1	0%	possibly_damaging(0.637)	tolerated(0.33)	neutral(0.247)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
IQCD	115811	genome.wustl.edu	37	12	113645857	113645857	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138451.1	-1	provisional	p.L39I	0.810	377	0%	344	28.5%	1	100%	benign(0.003)	tolerated(0.11)	neutral(0.272)	NULL
LOC100287933	100287933	genome.wustl.edu	37	12	113906345	113906345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343216.1	+1	model	p.K304T	0.001	14	0%	15	40%	0	-	-	-	-	NULL
RBM19	9904	genome.wustl.edu	37	12	114356212	114356212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016196.3	-1	reviewed	p.S809L	0.993	53	1.9%	48	35.4%	23	39.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_RNA-binding domain RBD
RBM19	9904	genome.wustl.edu	37	12	114397071	114397071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016196.3	-1	reviewed	p.D173N	1.000	98	0%	101	38.6%	8	25%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
RBM19	9904	genome.wustl.edu	37	12	114397975	114397975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016196.3	-1	reviewed	p.F76L	0.996	186	0%	148	29.1%	9	44.4%	benign(0)	tolerated(0.72)	neutral(0.002)	superfamily_RNA-binding domain RBD
TBX5	6910	genome.wustl.edu	37	12	114837376	114837376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000192.3	-1	reviewed	p.L102I	1.000	194	0%	415	30.4%	0	-	possibly_damaging(0.762)	deleterious(0.02)	deleterious(0.665)	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors
NOS1	4842	genome.wustl.edu	37	12	117705894	117705894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000620.2	-1	reviewed	p.D632G	1.000	62	0%	46	21.7%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
NOS1	4842	genome.wustl.edu	37	12	117718611	117718611	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000620.2	-1	reviewed	p.N481	0.622	43	0%	60	25%	0	-	-	-	-	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
NOS1	4842	genome.wustl.edu	37	12	117768704	117768704	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000620.2	-1	reviewed	p.L57	0.995	28	0%	44	18.2%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
RFC5	5985	genome.wustl.edu	37	12	118457550	118457550	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007370.4	+1	reviewed	p.E82*	1.000	85	0%	134	32.8%	21	14.2%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
PEBP1	5037	genome.wustl.edu	37	12	118575870	118575870	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002567.2	+1	validated	p.S54	0.002	68	0%	155	33.5%	545	40%	-	-	-	HMMPfam_PBP,superfamily_PEBP-like
CCDC60	160777	genome.wustl.edu	37	12	119937888	119937888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178499.3	+1	validated	p.P188L	0.952	94	0%	51	41.2%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	NULL
CIT	11113	genome.wustl.edu	37	12	120148158	120148158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007174.1	-1	validated	p.A1615T	1.000	134	0%	133	29.3%	4	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CNH,HMMSmart_SM00036
CIT	11113	genome.wustl.edu	37	12	120150420	120150420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007174.1	-1	validated	p.E1512K	1.000	62	0%	59	32.2%	16	68.7%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CIT	11113	genome.wustl.edu	37	12	120214625	120214625	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007174.1	-1	validated	p.E563*	1.000	75	0%	53	35.8%	4	50%	-	-	-	NULL
CCDC64	92558	genome.wustl.edu	37	12	120499548	120499548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207311.2	+1	validated	p.V227A	1.000	53	0%	68	33.8%	20	40%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
PXN	5829	genome.wustl.edu	37	12	120651760	120651760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080855.1	-1	validated	p.R465H	1.000	50	0%	77	26%	125	33.6%	benign(0.101)	tolerated(0.12)	neutral(0.268)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
COQ5	84274	genome.wustl.edu	37	12	120941430	120941430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000302223	-1	known	p.K218T	0.004	18	0%	15	40%	23	17.3%	unknown(0)	deleterious(0)	-	NULL
RNF10	9921	genome.wustl.edu	37	12	121000846	121000846	+	Silent	SNP	G	G	A	rs61760870	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014868.4	+1	reviewed	p.A409	0.110	180	0%	119	32.8%	241	43.1%	-	-	-	NULL
RNF34	80196	genome.wustl.edu	37	12	121854123	121854123	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194271.1	+1	reviewed	p.E57D	0.993	150	0%	104	25%	19	68.4%	benign(0.311)	tolerated(0.16)	neutral(0.157)	superfamily_FYVE/PHD zinc finger
KDM2B	84678	genome.wustl.edu	37	12	121880604	121880604	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032590.4	-1	reviewed	p.A880	0.000	35	0%	52	36.5%	23	39.1%	-	-	-	NULL
KDM2B	84678	genome.wustl.edu	37	12	122018742	122018742	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032590.4	-1	reviewed	p.K25N	0.044	307	0%	624	31.9%	1	0%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
DIABLO	56616	genome.wustl.edu	37	12	122692960	122692960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019887.4	-1	reviewed	p.S230P	0.000	123	0%	189	23.8%	151	44.3%	benign(0)	tolerated(0.23)	neutral(0.042)	superfamily_Smac/diablo,HMMPfam_Smac_DIABLO
CLIP1	6249	genome.wustl.edu	37	12	122825857	122825857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002956.2	-1	validated	p.A621T	0.994	145	0%	123	35.8%	12	25%	benign(0.072)	tolerated(0.32)	neutral(0.029)	NULL
ZCCHC8	55596	genome.wustl.edu	37	12	122958596	122958596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017612.2	-1	validated	p.Q524H	1.000	109	0%	68	14.7%	31	25.8%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
HCAR1	27198	genome.wustl.edu	37	12	123214200	123214200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032554.3	-1	validated	p.F229L	0.142	55	1.8%	55	27.3%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CCDC62	84660	genome.wustl.edu	37	12	123265730	123265730	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201435.3	+1	validated	p.T83	0.996	109	0%	149	35.6%	0	-	-	-	-	NULL
CCDC62	84660	genome.wustl.edu	37	12	123282687	123282687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201435.3	+1	validated	p.S306Y	1.000	97	0%	112	27.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ABCB9	23457	genome.wustl.edu	37	12	123430707	123430707	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019625.3	-1	reviewed	p.I372	1.000	84	0%	159	13.8%	19	5.2%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB9	23457	genome.wustl.edu	37	12	123434459	123434459	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019625.3	-1	reviewed	p.F241	1.000	70	0%	137	32.8%	17	52.9%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB9	23457	genome.wustl.edu	37	12	123444635	123444635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019625.3	-1	reviewed	p.L50I	1.000	18	0%	28	32.1%	10	70%	benign(0.009)	tolerated(0.33)	neutral(0.025)	NULL
OGFOD2	79676	genome.wustl.edu	37	12	123461269	123461269	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024623.1	+1	provisional	p.A26	0.000	33	0%	72	43.1%	39	46.1%	unknown(0)	-	-	NULL
CDK2AP1	8099	genome.wustl.edu	37	12	123749831	123749831	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004642.2	-1	reviewed	p.A64	0.756	134	0%	250	30.4%	635	48.6%	-	-	-	HMMPfam_CDK2AP
SBNO1	55206	genome.wustl.edu	37	12	123813290	123813290	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018183.3	-1	validated	p.F428	0.998	206	0%	128	35.9%	15	60%	-	-	-	NULL
DDX55	57696	genome.wustl.edu	37	12	124097762	124097762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020936.1	+1	reviewed	p.R263C	1.000	167	0.6%	195	30.3%	14	57.1%	probably_damaging(0.975)	tolerated(0.07)	deleterious(0.736)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATP6V0A2	23545	genome.wustl.edu	37	12	124233273	124233273	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012463.3	+1	reviewed	p.E626*	1.000	193	0%	193	31.6%	7	0%	-	-	-	HMMPfam_V_ATPase_I
DNAH10	196385	genome.wustl.edu	37	12	124268572	124268572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207437.3	+1	validated	p.L299I	0.977	144	0%	155	31.6%	0	-	benign(0.045)	tolerated(0.2)	neutral(0.052)	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124333344	124333344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207437.3	+1	validated	p.R1888Q	1.000	211	0%	269	35.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124345714	124345714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207437.3	+1	validated	p.R2184Q	1.000	84	0%	45	42.2%	0	-	possibly_damaging(0.941)	tolerated(0.12)	deleterious(0.647)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124358140	124358140	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207437.3	+1	validated	p.T2489	0.020	95	0%	95	33.7%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH10	196385	genome.wustl.edu	37	12	124393957	124393957	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207437.3	+1	validated	p.S3204*	0.110	83	0%	130	33.8%	0	-	-	-	-	NULL
CCDC92	80212	genome.wustl.edu	37	12	124422354	124422354	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025140.1	-1	provisional	p.E83*	0.998	198	0%	338	32.2%	19	42.1%	-	-	-	NULL
LOC100288312	100288312	genome.wustl.edu	37	12	125397046	125397046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343222.1	+1	model	p.D310Y	1.000	280	0%	383	29.5%	5471	12.4%	-	-	-	NULL
DHX37	57647	genome.wustl.edu	37	12	125435248	125435248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032656.2	-1	reviewed	p.M991V	1.000	128	0%	197	28.9%	20	45%	possibly_damaging(0.643)	tolerated(0.23)	neutral(0.267)	HMMPfam_DUF1605
AACS	65985	genome.wustl.edu	37	12	125613907	125613907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023928.3	+1	validated	p.E484K	1.000	109	0%	151	28.5%	42	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
TMEM132B	114795	genome.wustl.edu	37	12	125834486	125834486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052907.2	+1	provisional	p.G181R	1.000	34	0%	22	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126068523	126068523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052907.2	+1	provisional	p.D469N	0.965	277	0.4%	158	33.5%	0	-	probably_damaging(0.992)	tolerated(0.49)	neutral(0.458)	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126139061	126139061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052907.2	+1	provisional	p.M1014I	0.000	61	0%	40	30%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
TMEM132C	92293	genome.wustl.edu	37	12	129190804	129190804	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136103.2	+1	provisional	p.L985	0.122	28	0%	53	35.8%	5	0%	-	-	-	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130892338	130892338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015347.4	-1	validated	p.S953L	0.151	72	0%	77	16.9%	0	-	-	-	-	superfamily_SH3-domain
RIMBP2	23504	genome.wustl.edu	37	12	130897194	130897194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015347.4	-1	validated	p.L931I	1.000	139	0%	163	28.2%	1	0%	probably_damaging(0.973)	tolerated(0.18)	deleterious(0.471)	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130926553	130926553	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015347.4	-1	validated	p.I431	0.845	62	0%	63	27%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RIMBP2	23504	genome.wustl.edu	37	12	130926559	130926559	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015347.4	-1	validated	p.F429	0.961	67	0%	69	37.7%	2	50%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MMP17	4326	genome.wustl.edu	37	12	132334477	132334477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016155.4	+1	reviewed	p.F445L	1.000	53	0%	84	32.1%	13	46.1%	benign(0.01)	tolerated(0.23)	neutral(0.042)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
ULK1	8408	genome.wustl.edu	37	12	132391447	132391447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003565.2	+1	validated	p.N86T	0.991	126	0%	352	31%	25	24%	benign(0.025)	tolerated(0.37)	neutral(0.020)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC100288577	100288577	genome.wustl.edu	37	12	132426186	132426186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343226.1	-1	model	p.D56N	0.421	100	0%	174	14.4%	55	20%	-	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132446241	132446241	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015409.3	+1	validated	p.P359	1.000	180	0%	349	11.2%	4	50%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133208906	133208906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006231.2	-1	validated	p.C2109R	1.000	71	0%	118	27.1%	59	30.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
POLE	5426	genome.wustl.edu	37	12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006231.2	-1	validated	p.P286R	1.000	100	0%	169	34.3%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ZNF10	7556	genome.wustl.edu	37	12	133732473	133732473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015394.4	+1	reviewed	p.E214G	0.002	124	0%	72	37.5%	15	80%	benign(0.042)	deleterious(0.04)	neutral(0.351)	superfamily_C2H2 and C2HC zinc fingers
ZNF10	7556	genome.wustl.edu	37	12	133733106	133733106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015394.4	+1	reviewed	p.R425I	1.000	94	0%	30	36.7%	14	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133768135	133768135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003415.2	+1	validated	p.D99Y	0.697	185	0%	114	28.9%	10	30%	unknown(0)	tolerated(0.07)	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC729535	729535	genome.wustl.edu	37	13	19271319	19271319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001130539.3	+1	model	p.E71K	0.087	56	0%	81	35.8%	25	0%	-	-	-	NULL
TPTE2	93492	genome.wustl.edu	37	13	19999128	19999128	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199254.2	-1	validated	p.P475	0.196	198	0%	99	30.3%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TPTE2	93492	genome.wustl.edu	37	13	20048216	20048216	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199254.2	-1	validated	e6-1	0.823	76	0%	51	27.5%	0	-	-	-	-	-
MPHOSPH8	54737	genome.wustl.edu	37	13	20244432	20244432	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017520.3	+1	validated	p.A796P	1.000	253	0%	205	30.7%	31	25.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PSPC1	55269	genome.wustl.edu	37	13	20283697	20283697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042414.1	-1	validated	p.A401S	1.000	359	0%	202	28.7%	72	43%	possibly_damaging(0.799)	tolerated(0.28)	neutral(0.333)	NULL
ZMYM2	7750	genome.wustl.edu	37	13	20577252	20577252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003453.2	+1	validated	p.K370N	1.000	96	0%	38	42.1%	15	73.3%	possibly_damaging(0.88)	deleterious(0)	deleterious(0.788)	HMMPfam_zf-FCS
GJA3	2700	genome.wustl.edu	37	13	20717020	20717020	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021954.3	-1	reviewed	p.R136	0.896	37	0%	55	34.5%	0	-	-	-	-	NULL
GJB2	2706	genome.wustl.edu	37	13	20763377	20763377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004004.5	-1	reviewed	p.F115C	0.000	133	0%	198	37.9%	9	11.1%	benign(0.223)	tolerated(0.17)	neutral(0.081)	HMMPfam_Connexin
N6AMT2	221143	genome.wustl.edu	37	13	21306195	21306195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174928.1	-1	provisional	p.S98L	0.040	104	0%	153	33.3%	16	31.2%	benign(0.068)	tolerated(0.32)	neutral(0.029)	HMMPfam_DPPF
N6AMT2	221143	genome.wustl.edu	37	13	21331664	21331664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174928.1	-1	provisional	p.A25D	1.000	237	0%	230	28.7%	13	53.8%	benign(0.006)	tolerated(0.28)	neutral(0.032)	NULL
XPO4	64328	genome.wustl.edu	37	13	21383304	21383304	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022459.4	-1	validated	p.R471*	1.000	117	0%	53	39.6%	3	0%	-	-	-	superfamily_ARM-type_fold
XPO4	64328	genome.wustl.edu	37	13	21384066	21384066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022459.4	-1	validated	p.K405T	0.997	118	0.8%	89	40.4%	2	100%	benign(0.006)	tolerated(0.12)	neutral(0.261)	superfamily_ARM-type_fold
FGF9	2254	genome.wustl.edu	37	13	22275367	22275367	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002010.2	+1	reviewed	p.F140	1.000	69	0%	59	39%	0	-	-	-	-	HMMPfam_FGF,HMMSmart_SM00442,PatternScan_HBGF_FGF,superfamily_Cytokine
SACS	26278	genome.wustl.edu	37	13	23905090	23905090	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.E4309*	1.000	93	0%	62	27.4%	3	33.3%	-	-	-	superfamily_Chaperone J-domain
SACS	26278	genome.wustl.edu	37	13	23907160	23907160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.E3619K	1.000	72	0%	36	33.3%	4	0%	benign(0.028)	tolerated(0.36)	neutral(0.022)	NULL
SACS	26278	genome.wustl.edu	37	13	23908582	23908582	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.E3145*	1.000	27	0%	15	33.3%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23911014	23911014	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.K2334T	0.981	153	0%	83	30.1%	1	0%	benign(0.409)	tolerated(0.13)	neutral(0.385)	NULL
SACS	26278	genome.wustl.edu	37	13	23911305	23911305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.E2237A	1.000	94	0%	49	32.7%	1	0%	benign(0.001)	tolerated(0.5)	neutral(0.010)	NULL
SACS	26278	genome.wustl.edu	37	13	23911784	23911784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.M2077I	1.000	56	0%	16	37.5%	0	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
SACS	26278	genome.wustl.edu	37	13	23914939	23914939	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.E1026*	1.000	82	0%	43	25.6%	0	-	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23945280	23945280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014363.4	-1	reviewed	p.D66N	1.000	119	0%	218	32.1%	1	0%	benign(0.006)	tolerated(0.34)	neutral(0.023)	superfamily_Ubiquitin-like
C1QTNF9B	387911	genome.wustl.edu	37	13	24470983	24470983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007537.1	-1	provisional	p.A48V	0.746	196	0%	300	30.7%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_Collagen
PARP4	143	genome.wustl.edu	37	13	25033257	25033257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006437.3	-1	reviewed	p.F783L	1.000	199	0%	125	38.4%	12	33.3%	possibly_damaging(0.456)	tolerated(0.26)	neutral(0.183)	NULL
PARP4	143	genome.wustl.edu	37	13	25075782	25075782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006437.3	-1	reviewed	p.A108V	0.000	190	0%	247	39.3%	9	11.1%	benign(0.291)	tolerated(0.5)	neutral(0.099)	NULL
ATP12A	479	genome.wustl.edu	37	13	25255709	25255709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001676.5	+1	reviewed	p.E7K	0.445	80	0%	155	26.5%	1	0%	benign(0.095)	deleterious(0.02)	neutral(0.390)	NULL
ATP12A	479	genome.wustl.edu	37	13	25264532	25264532	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001676.5	+1	reviewed	p.V201	1.000	92	0%	97	39.2%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
ATP12A	479	genome.wustl.edu	37	13	25285645	25285645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001676.5	+1	reviewed	p.K1035N	1.000	226	0%	212	26.4%	0	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	NULL
RNF17	56163	genome.wustl.edu	37	13	25362131	25362131	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031277.2	+1	reviewed	p.K206M	0.998	72	0%	15	26.7%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
RNF17	56163	genome.wustl.edu	37	13	25416216	25416216	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031277.2	+1	reviewed	p.F840	0.776	286	0%	133	24.1%	0	-	-	-	-	superfamily_Staphylococcal nuclease
RNF17	56163	genome.wustl.edu	37	13	25425702	25425702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031277.2	+1	reviewed	p.E1105*	0.997	166	0%	93	22.6%	0	-	-	-	-	NULL
RNF17	56163	genome.wustl.edu	37	13	25453360	25453360	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031277.2	+1	reviewed	p.D1603	0.924	78	0%	61	18%	0	-	-	-	-	superfamily_Staphylococcal nuclease
MTMR6	9107	genome.wustl.edu	37	13	25842050	25842050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004685.3	-1	validated	p.E57D	1.000	142	0%	162	36.4%	10	30%	possibly_damaging(0.841)	deleterious(0.02)	deleterious(0.705)	superfamily_PH domain-like
ATP8A2	51761	genome.wustl.edu	37	13	26104729	26104729	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016529.4	+1	validated	p.R117	1.000	233	0%	100	24%	0	-	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26107451	26107451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016529.4	+1	validated	p.E169D	1.000	72	0%	40	22.5%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
SHISA2	387914	genome.wustl.edu	37	13	26620688	26620688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007538.1	-1	provisional	p.N284S	0.000	64	0%	97	23.7%	1	0%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
CDK8	1024	genome.wustl.edu	37	13	26970475	26970475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001260.1	+1	reviewed	p.D282Y	1.000	56	0%	42	19%	5	40%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WASF3	10810	genome.wustl.edu	37	13	27241727	27241727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006646.5	+1	reviewed	p.K114N	1.000	73	0%	47	36.2%	2	50%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
GPR12	2835	genome.wustl.edu	37	13	27333332	27333332	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005288.3	-1	validated	p.A211	0.821	50	0%	70	35.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
USP12	219333	genome.wustl.edu	37	13	27643492	27643492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182488.2	-1	provisional	p.F347L	1.000	196	0%	135	28.1%	0	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMPfam_UCH,superfamily_SSF54001
RPL21	6144	genome.wustl.edu	37	13	27830610	27830610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000982.3	+1	reviewed	p.N144T	1.000	15	0%	29	17.2%	178	34.8%	benign(0.046)	tolerated(0.26)	neutral(0.037)	NULL
GTF3A	2971	genome.wustl.edu	37	13	28009647	28009647	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002097.2	+1	reviewed	p.Q337H	0.000	128	0%	104	9.6%	174	9.1%	benign(0.075)	tolerated(0.14)	neutral(0.255)	NULL
LNX2	222484	genome.wustl.edu	37	13	28127441	28127441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153371.3	-1	validated	p.A561V	0.134	72	0%	27	18.5%	12	58.3%	benign(0.005)	tolerated(0.28)	neutral(0.032)	NULL
FLT3	2322	genome.wustl.edu	37	13	28592617	28592617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004119.2	-1	reviewed	p.V843A	0.998	117	0%	91	36.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FLT3	2322	genome.wustl.edu	37	13	28608352	28608352	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004119.2	-1	reviewed	e14-1	1.000	159	0%	68	36.8%	0	-	-	-	-	-
FLT1	2321	genome.wustl.edu	37	13	29004306	29004306	+	Splice_Site	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002019.4	-1	reviewed	e8-2	1.000	76	0%	42	26.2%	0	-	-	-	-	-
FLT1	2321	genome.wustl.edu	37	13	29041252	29041252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002019.4	-1	reviewed	p.H59R	0.738	187	0%	89	23.6%	3	0%	possibly_damaging(0.608)	tolerated(0.07)	deleterious(0.529)	HMMSmart_SM00409,superfamily_Immunoglobulin
POMP	51371	genome.wustl.edu	37	13	29242633	29242633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015932.4	+1	validated	p.M62I	1.000	142	0%	151	31.1%	244	29%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_UMP1
SLC46A3	283537	genome.wustl.edu	37	13	29275670	29275670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135919.1	-1	validated	p.I450M	0.429	175	0%	82	23.2%	4	25%	benign(0.071)	deleterious(0.04)	neutral(0.354)	NULL
SLC46A3	283537	genome.wustl.edu	37	13	29284946	29284946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135919.1	-1	validated	p.F365L	0.088	94	0%	109	28.4%	6	0%	benign(0)	tolerated(1)	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC46A3	283537	genome.wustl.edu	37	13	29287108	29287108	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135919.1	-1	validated	p.R257*	0.002	75	0%	95	25.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MTUS2	23281	genome.wustl.edu	37	13	29599362	29599362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033602.2	+1	validated	p.S186Y	0.018	52	0%	30	30%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MTUS2	23281	genome.wustl.edu	37	13	29599373	29599373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033602.2	+1	validated	p.A190S	0.008	50	0%	27	33.3%	0	-	benign(0.02)	tolerated(0.05)	neutral(0.346)	NULL
MTUS2	23281	genome.wustl.edu	37	13	29599907	29599907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033602.2	+1	validated	p.D368N	0.000	40	0%	30	16.7%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
MTUS2	23281	genome.wustl.edu	37	13	30072623	30072623	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033602.2	+1	validated	p.K1259	1.000	114	0%	89	28.1%	0	-	-	-	-	NULL
UBL3	5412	genome.wustl.edu	37	13	30341437	30341437	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007106.3	-1	validated	p.R103	1.000	66	0%	33	15.2%	20	50%	-	-	-	NULL
USPL1	10208	genome.wustl.edu	37	13	31231980	31231980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005800.4	+1	validated	p.E589G	0.866	173	0%	87	21.8%	6	16.6%	possibly_damaging(0.489)	deleterious(0)	deleterious(0.607)	NULL
USPL1	10208	genome.wustl.edu	37	13	31232232	31232232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005800.4	+1	validated	p.T673N	0.000	58	0%	57	38.6%	11	45.4%	benign(0.427)	deleterious(0.03)	deleterious(0.504)	NULL
HSPH1	10808	genome.wustl.edu	37	13	31711623	31711623	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006644.2	-1	validated	p.P803	0.973	408	0%	160	39.4%	78	84.6%	-	-	-	superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain
HSPH1	10808	genome.wustl.edu	37	13	31717955	31717955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006644.2	-1	validated	p.E564*	1.000	202	0%	116	21.6%	64	4.6%	-	-	-	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
HSPH1	10808	genome.wustl.edu	37	13	31725211	31725211	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006644.2	-1	validated	p.R261*	0.961	236	0%	121	31.4%	53	3.7%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
B3GALTL	145173	genome.wustl.edu	37	13	31797099	31797099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194318.3	+1	reviewed	p.K44T	0.957	324	0%	202	31.7%	2	100%	benign(0.086)	deleterious(0.04)	neutral(0.355)	NULL
B3GALTL	145173	genome.wustl.edu	37	13	31850894	31850894	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194318.3	+1	reviewed	p.F279C	1.000	274	0%	164	28.7%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fringe
FRY	10129	genome.wustl.edu	37	13	32721489	32721489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023037.2	+1	validated	p.R417Q	1.000	141	0%	142	26.1%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FRY	10129	genome.wustl.edu	37	13	32811838	32811838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023037.2	+1	validated	p.F2045V	1.000	64	0%	28	28.6%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRCA2	675	genome.wustl.edu	37	13	32900276	32900276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000059.3	+1	reviewed	p.R155I	0.981	173	0%	84	32.1%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
BRCA2	675	genome.wustl.edu	37	13	32911683	32911683	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000059.3	+1	reviewed	p.S1064*	0.694	95	0%	60	36.7%	1	0%	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32911909	32911909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000059.3	+1	reviewed	p.K1139N	0.004	81	0%	42	21.4%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
BRCA2	675	genome.wustl.edu	37	13	32913312	32913312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000059.3	+1	reviewed	p.I1607S	0.000	23	0%	22	27.3%	4	0%	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
BRCA2	675	genome.wustl.edu	37	13	32921032	32921032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000059.3	+1	reviewed	p.R2336C	0.118	214	0%	100	28%	0	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
N4BP2L2	10443	genome.wustl.edu	37	13	33111135	33111135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014887.2	-1	validated	p.F10L	0.461	167	0%	198	29.3%	26	11.5%	benign(0.004)	tolerated(0.77)	neutral(0.001)	NULL
KL	9365	genome.wustl.edu	37	13	33638048	33638048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004795.3	+1	reviewed	p.A922T	0.993	164	0%	149	38.3%	0	-	benign(0.052)	tolerated(0.79)	neutral(0.004)	superfamily_(Trans)glycosidases
STARD13	90627	genome.wustl.edu	37	13	33741737	33741737	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178006.3	-1	validated	p.C64	1.000	78	0%	59	13.6%	1	0%	-	-	-	HMMPfam_SAM_2
RFC3	5983	genome.wustl.edu	37	13	34395384	34395384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002915.3	+1	reviewed	p.R68K	1.000	191	0%	251	30.3%	46	58.6%	benign(0.016)	tolerated(1)	neutral(0.001)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
NBEA	26960	genome.wustl.edu	37	13	35806683	35806683	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015678.4	+1	validated	p.E1901D	1.000	163	0%	86	33.7%	2	50%	probably_damaging(0.984)	tolerated(0.13)	deleterious(0.683)	superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	36125136	36125136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015678.4	+1	validated	p.G2258V	1.000	127	0%	65	23.1%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat,superfamily_PH domain-like
NBEA	26960	genome.wustl.edu	37	13	36223874	36223874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015678.4	+1	validated	p.S2597Y	1.000	115	0%	133	36.8%	8	12.5%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_WD40 repeat-like
DCLK1	9201	genome.wustl.edu	37	13	36367505	36367505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004734.3	-1	validated	p.A686T	1.000	337	0%	136	25%	25	52%	benign(0)	tolerated(1)	-	NULL
SERTM1	400120	genome.wustl.edu	37	13	37269344	37269344	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203451.2	+1	validated	p.I43	1.000	207	0%	111	24.3%	2	50%	-	-	-	NULL
SERTM1	400120	genome.wustl.edu	37	13	37269473	37269473	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203451.2	+1	validated	p.S86	0.463	163	0%	108	36.1%	1	0%	-	-	-	NULL
RFXAP	5994	genome.wustl.edu	37	13	37399632	37399632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000538.3	+1	reviewed	p.R223K	1.000	124	0%	164	26.2%	6	50%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
POSTN	10631	genome.wustl.edu	37	13	38158932	38158932	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006475.2	-1	validated	p.I343	1.000	280	0%	129	36.4%	16	0%	-	-	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
POSTN	10631	genome.wustl.edu	37	13	38160279	38160279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006475.2	-1	validated	p.E298K	1.000	121	0%	38	42.1%	9	0%	benign(0.001)	tolerated(0.93)	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
STOML3	161003	genome.wustl.edu	37	13	39541004	39541004	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145286.2	-1	validated	p.G278	0.000	47	2.1%	27	37%	0	-	-	-	-	NULL
STOML3	161003	genome.wustl.edu	37	13	39544322	39544322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145286.2	-1	validated	p.Q172H	1.000	58	0%	22	40.9%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Band_7,HMMSmart_PHB,PatternScan_BAND_7
STOML3	161003	genome.wustl.edu	37	13	39544435	39544435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145286.2	-1	validated	p.D135N	0.990	72	0%	37	27%	0	-	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMPfam_Band_7,HMMSmart_PHB
SLC25A15	10166	genome.wustl.edu	37	13	41382658	41382658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014252.3	+1	reviewed	p.R236K	1.000	288	0%	192	37%	6	83.3%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
KBTBD6	89890	genome.wustl.edu	37	13	41706560	41706560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152903.4	-1	validated	p.V30I	0.888	67	0%	74	29.7%	9	33.3%	possibly_damaging(0.931)	tolerated(0.3)	neutral(0.406)	NULL
NAA16	79612	genome.wustl.edu	37	13	41897318	41897318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024561.4	+1	validated	p.T177A	1.000	176	0%	176	33.5%	4	50%	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	superfamily_TPR-like
NAA16	79612	genome.wustl.edu	37	13	41899872	41899872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024561.4	+1	validated	p.L192F	1.000	114	0%	94	27.7%	3	0%	benign(0.333)	tolerated(0.07)	neutral(0.423)	superfamily_TPR-like
KIAA0564	23078	genome.wustl.edu	37	13	42275660	42275660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015058.1	-1	validated	p.A1078S	0.998	245	0%	128	32%	6	33.3%	benign(0.03)	tolerated(0.07)	neutral(0.321)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42295659	42295659	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015058.1	-1	validated	p.L937	0.170	135	0%	55	32.7%	17	58.8%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0564	23078	genome.wustl.edu	37	13	42301368	42301368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015058.1	-1	validated	p.G907V	1.000	148	0.7%	61	9.8%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
AKAP11	11215	genome.wustl.edu	37	13	42874565	42874565	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016248.2	+1	reviewed	p.S561R	1.000	79	0%	29	34.5%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ENOX1	55068	genome.wustl.edu	37	13	43987010	43987010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127615.1	-1	validated	p.P14L	0.253	111	0%	151	30.5%	0	-	possibly_damaging(0.913)	deleterious(0.02)	deleterious(0.748)	NULL
CCDC122	160857	genome.wustl.edu	37	13	44432991	44432991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144974.3	-1	validated	p.E200*	0.995	120	0%	72	30.6%	0	-	-	-	-	NULL
TSC22D1	8848	genome.wustl.edu	37	13	45149429	45149429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183422.2	-1	validated	p.K261T	0.998	51	0%	94	27.7%	28	46.4%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
NUFIP1	26747	genome.wustl.edu	37	13	45515406	45515406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012345.2	-1	validated	p.R475W	1.000	142	0%	70	27.1%	9	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46164794	46164794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182542.2	-1	predicted	p.R226C	0.000	122	0%	85	27.1%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
FAM194B	220081	genome.wustl.edu	37	13	46170547	46170547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182542.2	-1	predicted	p.E198D	0.000	327	0%	375	34.4%	0	-	benign(0.002)	tolerated(0.42)	neutral(0.014)	NULL
SPERT	220082	genome.wustl.edu	37	13	46287863	46287863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152719.1	+1	provisional	p.A235T	0.000	18	0%	30	30%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
ZC3H13	23091	genome.wustl.edu	37	13	46559794	46559794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015070.3	-1	validated	p.R453Q	1.000	278	0%	235	28.9%	17	41.1%	unknown(0)	deleterious(0.01)	-	NULL
LRCH1	23143	genome.wustl.edu	37	13	47224417	47224417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015116.2	+1	reviewed	p.N130T	1.000	152	0%	123	25.2%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
HTR2A	3356	genome.wustl.edu	37	13	47409525	47409525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000621.3	-1	reviewed	p.S288Y	1.000	74	0%	33	39.4%	0	-	possibly_damaging(0.885)	deleterious(0.01)	deleterious(0.752)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RB1	5925	genome.wustl.edu	37	13	49050942	49050942	+	Missense_Mutation	SNP	C	C	T	rs143105337	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000321.2	+1	reviewed	p.R876C	1.000	104	0%	59	28.8%	23	26%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rb_C
FNDC3A	22862	genome.wustl.edu	37	13	49710718	49710718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079673.1	+1	validated	p.Q247H	0.943	170	0%	87	11.5%	8	25%	possibly_damaging(0.823)	tolerated(0.1)	deleterious(0.598)	NULL
FNDC3A	22862	genome.wustl.edu	37	13	49742748	49742748	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079673.1	+1	validated	e9-1	1.000	108	0%	64	20.3%	0	-	-	-	-	-
FNDC3A	22862	genome.wustl.edu	37	13	49760153	49760153	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079673.1	+1	validated	p.F557L	0.998	110	0%	83	31.3%	8	25%	benign(0)	tolerated(0.65)	neutral(0.003)	superfamily_Fibronectin type III
MLNR	2862	genome.wustl.edu	37	13	49796434	49796434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001507.1	+1	provisional	p.A387V	0.000	58	0%	106	35.8%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
CAB39L	81617	genome.wustl.edu	37	13	49924992	49924992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079670.1	-1	validated	p.R151Q	1.000	94	0%	66	25.8%	7	71.4%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Mo25,superfamily_ARM-type_fold
SETDB2	83852	genome.wustl.edu	37	13	50050703	50050703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031915.2	+1	validated	p.H145N	0.999	54	0%	22	31.8%	4	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
RCBTB1	55213	genome.wustl.edu	37	13	50118873	50118873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018191.3	-1	reviewed	p.R391K	1.000	177	0%	143	29.4%	6	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ARL11	115761	genome.wustl.edu	37	13	50204764	50204764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138450.5	+1	reviewed	p.L61I	0.295	47	0%	29	27.6%	2	0%	benign(0.354)	tolerated(0.12)	neutral(0.372)	HMMSmart_ARF,HMMPfam_Arf,superfamily_SSF52540
KPNA3	3839	genome.wustl.edu	37	13	50285136	50285136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002267.3	-1	reviewed	p.A265D	1.000	85	0%	56	32.1%	23	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
SPRYD7	57213	genome.wustl.edu	37	13	50495691	50495691	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020456.2	-1	validated	p.L139*	1.000	138	0%	118	32.2%	14	14.2%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
TRIM13	10206	genome.wustl.edu	37	13	50586868	50586868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007278.1	+1	reviewed	p.E267D	1.000	104	0%	43	30.2%	17	35.2%	possibly_damaging(0.719)	tolerated(0.49)	neutral(0.271)	NULL
RNASEH2B	79621	genome.wustl.edu	37	13	51522142	51522142	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024570.2	+1	reviewed	p.A212	0.997	136	0%	77	29.9%	48	41.6%	-	-	-	HMMPfam_RNase_H2-Ydr279
GUCY1B2	2974	genome.wustl.edu	37	13	51598289	51598289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000389600	-1	known	p.R158Q	0.066	194	0.5%	104	33.7%	0	-	-	-	-	HMMPfam_HNOBA
GUCY1B2	2974	genome.wustl.edu	37	13	51599553	51599553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000389600	-1	known	p.E76*	0.089	175	0%	68	20.6%	0	-	-	-	-	NULL
SERPINE3	647174	genome.wustl.edu	37	13	51935969	51935969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101320.1	+1	validated	p.R371W	0.996	136	0%	45	35.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINE3	647174	genome.wustl.edu	37	13	51936064	51936064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101320.1	+1	validated	p.I402M	0.000	198	0%	105	13.3%	0	-	possibly_damaging(0.911)	-	-	HMMPfam_Serpin,HMMSmart_SM00093
WDFY2	115825	genome.wustl.edu	37	13	52293459	52293459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052950.3	+1	reviewed	p.T154A	1.000	107	0%	96	29.2%	14	42.8%	benign(0.213)	tolerated(0.85)	neutral(0.022)	superfamily_WD40 repeat-like
WDFY2	115825	genome.wustl.edu	37	13	52301862	52301862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052950.3	+1	reviewed	p.Q178H	1.000	153	0%	81	24.7%	15	33.3%	probably_damaging(0.992)	tolerated(0.22)	deleterious(0.489)	superfamily_WD40 repeat-like
WDFY2	115825	genome.wustl.edu	37	13	52332409	52332409	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052950.3	+1	reviewed	p.L382	1.000	103	0%	85	25.9%	36	50%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
DHRS12	79758	genome.wustl.edu	37	13	52364150	52364150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031719.1	-1	provisional	p.L100M	0.015	159	0%	124	11.3%	11	18.1%	possibly_damaging(0.747)	tolerated(0.07)	deleterious(0.593)	superfamily_NAD(P)-bd
UTP14C	9724	genome.wustl.edu	37	13	52603414	52603414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021645.5	+1	validated	p.F158L	1.000	88	0%	49	22.4%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Utp14
UTP14C	9724	genome.wustl.edu	37	13	52604492	52604492	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021645.5	+1	validated	p.E518*	0.045	77	0%	39	28.2%	7	42.8%	-	-	-	HMMPfam_Utp14
NEK5	341676	genome.wustl.edu	37	13	52693509	52693509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199289.1	-1	provisional	p.L54I	1.000	186	0%	164	23.8%	0	-	probably_damaging(0.991)	tolerated(0.5)	neutral(0.454)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
HNRNPA1L2	144983	genome.wustl.edu	37	13	53216967	53216967	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011724.1	+1	validated	p.E114*	1.000	6	0.000	8	0.750	173	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
SUGT1	10910	genome.wustl.edu	37	13	53241004	53241004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130912.1	+1	reviewed	p.L225F	1.000	186	0%	109	32.1%	40	45%	possibly_damaging(0.558)	tolerated(1)	neutral(0.191)	superfamily_HSP20-like chaperones,HMMPfam_CS
LECT1	11061	genome.wustl.edu	37	13	53307403	53307403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007015.2	-1	reviewed	p.K102T	1.000	257	0%	327	33.6%	0	-	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	NULL
OLFM4	10562	genome.wustl.edu	37	13	53624837	53624837	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006418.3	+1	reviewed	p.Q488	0.089	85	0%	35	25.7%	22	36.3%	-	-	-	HMMPfam_OLF,HMMSmart_OLF
PCDH17	27253	genome.wustl.edu	37	13	58206950	58206950	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040429.2	+1	reviewed	p.I90	0.996	26	0%	51	33.3%	5	0%	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58209074	58209074	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040429.2	+1	reviewed	p.F798	1.000	45	0%	94	26.6%	3	0%	-	-	-	NULL
LOC341689	341689	genome.wustl.edu	37	13	59103395	59103395	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_017487.3	+1	model	NULL	0.197	123	0%	143	28.7%	0	-	-	-	-	-
DIAPH3	81624	genome.wustl.edu	37	13	60498968	60498968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042517.1	-1	validated	p.S704L	0.299	70	0%	37	27%	1	100%	benign(0.095)	tolerated(0.42)	neutral(0.021)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
DIAPH3	81624	genome.wustl.edu	37	13	60566266	60566266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042517.1	-1	validated	p.E394K	1.000	184	0%	45	35.6%	5	60%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_Drf_FH3
DIAPH3	81624	genome.wustl.edu	37	13	60686210	60686210	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042517.1	-1	validated	p.E108	0.006	203	0%	120	30%	4	0%	-	-	-	NULL
TDRD3	81550	genome.wustl.edu	37	13	61084832	61084832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030794.2	+1	validated	p.A269T	1.000	135	0%	62	27.4%	16	31.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TDRD3	81550	genome.wustl.edu	37	13	61102603	61102603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030794.2	+1	validated	p.R322Q	1.000	61	0%	50	38%	13	23%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	NULL
PCDH20	64881	genome.wustl.edu	37	13	61986309	61986309	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022843.3	-1	validated	p.N641	1.000	105	0%	153	33.3%	0	-	-	-	-	superfamily_Cadherin
PCDH9	5101	genome.wustl.edu	37	13	67799607	67799607	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203487.2	-1	reviewed	p.D989A	1.000	107	0%	113	35.4%	36	61.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Protocadherin
PCDH9	5101	genome.wustl.edu	37	13	67801073	67801073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203487.2	-1	reviewed	p.K500N	1.000	124	0%	158	38.6%	29	37.9%	benign(0.045)	tolerated(0.1)	neutral(0.289)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
KLHL1	57626	genome.wustl.edu	37	13	70293571	70293571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020866.2	-1	validated	p.L649I	1.000	103	0%	44	34.1%	0	-	possibly_damaging(0.843)	tolerated(0.38)	neutral(0.341)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL1	57626	genome.wustl.edu	37	13	70370916	70370916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020866.2	-1	validated	p.K531N	1.000	138	0%	117	37.6%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
BORA	79866	genome.wustl.edu	37	13	73319117	73319117	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024808.2	+1	validated	e7-2	0.992	86	0%	24	41.7%	1	100%	-	-	-	-
PIBF1	10464	genome.wustl.edu	37	13	73357637	73357637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006346.2	+1	validated	p.K10N	0.999	63	0%	116	33.6%	0	-	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	NULL
PIBF1	10464	genome.wustl.edu	37	13	73357820	73357820	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006346.2	+1	validated	p.T71	0.807	82	0%	141	31.9%	8	37.5%	-	-	-	NULL
PIBF1	10464	genome.wustl.edu	37	13	73547799	73547799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006346.2	+1	validated	p.L679I	1.000	100	0%	58	27.6%	18	22.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KLF12	11278	genome.wustl.edu	37	13	74420090	74420090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007249.4	-1	validated	p.H182N	1.000	95	0%	45	40%	4	50%	possibly_damaging(0.485)	tolerated(0.35)	neutral(0.181)	NULL
KLF12	11278	genome.wustl.edu	37	13	74420374	74420374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007249.4	-1	validated	p.N87S	1.000	81	0%	76	18.4%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75898521	75898521	+	Nonsense_Mutation	SNP	G	G	A	rs61736969	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014832.2	-1	validated	p.R684*	0.991	183	0%	112	25.9%	0	-	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76379688	76379688	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015842.2	+1	reviewed	p.Y97D	0.177	86	0%	79	27.8%	0	-	benign(0.255)	deleterious(0.01)	neutral(0.432)	NULL
FBXL3	26224	genome.wustl.edu	37	13	77595953	77595953	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012158.2	-1	reviewed	p.E15*	0.889	124	0%	186	35.5%	7	28.5%	-	-	-	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77671712	77671712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015057.4	-1	validated	p.L3155I	0.998	113	0%	50	12%	7	0%	possibly_damaging(0.916)	tolerated(0.45)	neutral(0.379)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77672420	77672420	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015057.4	-1	validated	p.F2919V	0.997	144	0%	73	30.1%	6	50%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77732220	77732220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015057.4	-1	validated	p.L2170I	1.000	141	0%	66	57.6%	2	50%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77817953	77817953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015057.4	-1	validated	p.D801N	1.000	152	0%	110	33.6%	8	37.5%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	superfamily_RCC1/BLIP-II
MYCBP2	23077	genome.wustl.edu	37	13	77825420	77825420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015057.4	-1	validated	p.E711D	1.000	127	0%	117	28.2%	3	66.6%	probably_damaging(0.971)	tolerated(0.51)	neutral(0.422)	superfamily_RCC1/BLIP-II
MYCBP2	23077	genome.wustl.edu	37	13	77844495	77844495	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015057.4	-1	validated	p.F337C	1.000	134	0%	68	30.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77844653	77844653	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015057.4	-1	validated	p.S284	0.437	190	0%	81	25.9%	0	-	-	-	-	NULL
SCEL	8796	genome.wustl.edu	37	13	78208567	78208567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144777.2	+1	validated	p.R582M	1.000	90	0%	166	12%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
POU4F1	5457	genome.wustl.edu	37	13	79176476	79176476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006237.3	-1	validated	p.E112K	1.000	13	0%	16	31.2%	0	-	unknown(0)	deleterious(0.04)	-	NULL
RNF219	79596	genome.wustl.edu	37	13	79190817	79190817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024546.3	-1	validated	p.M360T	1.000	200	0%	166	30.7%	6	50%	benign(0.27)	tolerated(0.26)	neutral(0.063)	NULL
RNF219	79596	genome.wustl.edu	37	13	79209326	79209326	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024546.3	-1	validated	p.K186T	1.000	185	0%	198	32.8%	8	25%	possibly_damaging(0.851)	tolerated(0.24)	neutral(0.364)	NULL
RBM26	64062	genome.wustl.edu	37	13	79896579	79896579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022118.3	-1	validated	p.R920C	1.000	183	0%	82	32.9%	59	37.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF54928
RBM26	64062	genome.wustl.edu	37	13	79929432	79929432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022118.3	-1	validated	p.V593L	1.000	346	0%	136	27.2%	22	50%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMSmart_RRM,superfamily_SSF54928
RBM26	64062	genome.wustl.edu	37	13	79939776	79939776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022118.3	-1	validated	p.V452M	1.000	215	0%	103	34%	26	50%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
NDFIP2	54602	genome.wustl.edu	37	13	80125172	80125172	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019080.2	+1	validated	p.G310*	1.000	110	0%	39	35.9%	8	0%	-	-	-	HMMPfam_DUF2370
SLITRK1	114798	genome.wustl.edu	37	13	84454383	84454383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052910.1	-1	reviewed	p.K420N	1.000	127	0%	137	33.6%	0	-	benign(0.025)	tolerated(0.49)	neutral(0.011)	HMMPfam_LRR_1,superfamily_SSF52058
SLITRK1	114798	genome.wustl.edu	37	13	84455172	84455172	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052910.1	-1	reviewed	p.E157	1.000	72	0%	67	32.8%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86368433	86368433	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032229.2	-1	validated	p.Y737	1.000	242	0%	121	21.5%	2	0%	-	-	-	NULL
SLITRK6	84189	genome.wustl.edu	37	13	86368523	86368523	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000313206	-1	known	p.*396R	1.000	211	0%	115	36.5%	9	88.8%	-	-	-	NULL
MIR19A	406979	genome.wustl.edu	37	13	92003209	92003209	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384878	+1	known	NULL	1.000	227	0%	364	35.7%	0	-	-	-	-	-
TGDS	23483	genome.wustl.edu	37	13	95232185	95232185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014305.2	-1	validated	p.S193N	1.000	197	0%	77	24.7%	9	22.2%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
TGDS	23483	genome.wustl.edu	37	13	95244502	95244502	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014305.2	-1	validated	p.F72C	1.000	227	0%	287	32.4%	10	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Epimerase,superfamily_NAD(P)-binding Rossmann-fold domains
SOX21	11166	genome.wustl.edu	37	13	95364062	95364062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007084.2	-1	validated	p.R81H	1.000	59	0%	85	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HMG-box
ABCC4	10257	genome.wustl.edu	37	13	95673859	95673859	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005845.3	-1	reviewed	p.S1316	0.012	156	0%	214	31.8%	15	33.3%	-	-	-	NULL
ABCC4	10257	genome.wustl.edu	37	13	95830328	95830328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005845.3	-1	reviewed	p.E521D	1.000	121	0%	70	12.9%	5	20%	benign(0.004)	deleterious(0.03)	neutral(0.364)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
DZIP1	22873	genome.wustl.edu	37	13	96264366	96264366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198968.2	-1	validated	p.F413L	1.000	195	0%	139	31.7%	1	100%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	NULL
DNAJC3	5611	genome.wustl.edu	37	13	96412463	96412463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006260.3	+1	reviewed	p.E239G	1.000	97	0%	42	42.9%	29	24.1%	benign(0.039)	tolerated(0.29)	neutral(0.031)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
FARP1	10160	genome.wustl.edu	37	13	99030122	99030122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005766.2	+1	reviewed	p.L149S	1.000	99	0%	34	29.4%	88	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
STK24	8428	genome.wustl.edu	37	13	99127571	99127571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003576.3	-1	validated	p.I136M	0.998	192	0%	378	32.3%	90	51.1%	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC15A1	6564	genome.wustl.edu	37	13	99356546	99356546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005073.3	-1	reviewed	p.Q471H	0.001	125	0%	83	25.3%	3	66.6%	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
SLC15A1	6564	genome.wustl.edu	37	13	99358477	99358477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005073.3	-1	reviewed	p.E394K	0.003	210	0%	130	25.4%	3	33.3%	possibly_damaging(0.439)	tolerated(0.08)	neutral(0.443)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
CLYBL	171425	genome.wustl.edu	37	13	100518604	100518604	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000339105	+1	known	p.R249*	0.387	102	0%	35	34.3%	10	20%	-	-	-	HMMPfam_HpcH_HpaI,superfamily_Phosphoenolpyruvate/pyruvate domain
TMTC4	84899	genome.wustl.edu	37	13	101257341	101257341	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032813.2	-1	validated	p.I730	1.000	238	0%	189	31.2%	29	48.2%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
NALCN	259232	genome.wustl.edu	37	13	101720313	101720313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052867.2	-1	validated	p.R1468H	1.000	202	0%	131	27.5%	1	0%	possibly_damaging(0.937)	deleterious(0.04)	deleterious(0.732)	superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	101844402	101844402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052867.2	-1	validated	p.F544V	1.000	84	0%	55	23.6%	1	100%	benign(0.072)	tolerated(0.09)	neutral(0.301)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	102029328	102029328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052867.2	-1	validated	p.R152Q	1.000	101	1%	86	48.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ITGBL1	9358	genome.wustl.edu	37	13	102227841	102227841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004791.1	+1	provisional	p.F177C	1.000	282	0%	183	32.8%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_SSF57196
TPP2	7174	genome.wustl.edu	37	13	103279486	103279486	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003291.2	+1	reviewed	p.T303	0.997	118	0%	48	33.3%	6	16.6%	-	-	-	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
TPP2	7174	genome.wustl.edu	37	13	103301293	103301293	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003291.2	+1	reviewed	p.R889*	1.000	271	0%	85	25.9%	23	17.3%	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103382954	103382954	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.L6546R	0.000	162	0%	45	26.7%	1	100%	unknown(0)	deleterious(0)	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103385458	103385458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.K5711N	0.004	299	0%	165	30.9%	0	-	unknown(0)	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103386646	103386646	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.L5315	0.009	230	0%	126	23.8%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103388561	103388561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.P4677Q	0.000	193	0%	103	29.1%	0	-	benign(0.049)	deleterious(0.02)	neutral(0.386)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103389704	103389704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.R4296I	0.001	210	0%	119	13.4%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103390364	103390364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.R4157I	0.000	422	0%	287	31.7%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103390990	103390990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.K3948N	0.000	363	0%	123	35%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103392450	103392450	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.E3462*	0.032	94	0%	50	42%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103392678	103392678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.E3386*	0.000	102	0%	38	10.5%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394403	103394403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.L2811I	0.000	210	0%	76	15.8%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394869	103394869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.F2655L	0.002	80	0%	30	40%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394968	103394968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.Q2622H	0.001	136	0%	50	26%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103396243	103396243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.F2197L	0.000	152	0%	81	40.7%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103399761	103399761	+	Missense_Mutation	SNP	G	G	A	rs143261898	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.P1025S	0.000	154	0%	60	36.7%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103399777	103399777	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.I1019	0.073	149	0%	60	26.7%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103401845	103401845	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344085.1	-1	model	p.F330C	0.000	110	0%	42	38.1%	0	-	-	-	-	NULL
KDELC1	79070	genome.wustl.edu	37	13	103449347	103449347	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024089.2	-1	reviewed	p.S65	0.622	180	0%	265	10.9%	12	0%	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
ERCC5	2073	genome.wustl.edu	37	13	103518673	103518673	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000123.2	+1	reviewed	p.K754I	0.968	47	0%	40	35%	31	38.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_PIN domain-like
SLC10A2	6555	genome.wustl.edu	37	13	103718407	103718407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000452.2	-1	reviewed	p.P65S	1.000	144	0%	78	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SBF
DAOA	267012	genome.wustl.edu	37	13	106142351	106142351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172370.3	+1	reviewed	p.R128L	0.000	66	0%	46	43.5%	0	-	possibly_damaging(0.599)	deleterious(0)	deleterious(0.652)	NULL
ARGLU1	55082	genome.wustl.edu	37	13	107211877	107211877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018011.3	-1	validated	p.R159Q	1.000	196	0%	203	31%	116	43.9%	possibly_damaging(0.666)	deleterious(0.03)	deleterious(0.601)	NULL
LOC390424	390424	genome.wustl.edu	37	13	107315861	107315861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344086.1	+1	model	p.S26Y	0.186	43	0%	18	38.9%	0	-	-	-	-	NULL
FAM155A	728215	genome.wustl.edu	37	13	108518147	108518147	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080396.2	-1	validated	p.E266	1.000	64	0%	106	40.6%	1	0%	-	-	-	NULL
LIG4	3981	genome.wustl.edu	37	13	108861812	108861812	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098268.1	-1	reviewed	p.L602R	0.670	120	0%	171	26.9%	7	57.1%	possibly_damaging(0.859)	deleterious(0.01)	deleterious(0.738)	NULL
LIG4	3981	genome.wustl.edu	37	13	108862001	108862001	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098268.1	-1	reviewed	p.L539*	0.944	118	0%	196	33.2%	10	40%	-	-	-	HMMPfam_DNA_ligase_A_C
ABHD13	84945	genome.wustl.edu	37	13	108882396	108882396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032859.2	+1	validated	p.K277T	1.000	68	0%	67	34.3%	19	21%	benign(0.007)	tolerated(0.29)	neutral(0.029)	superfamily_alpha/beta-Hydrolases
MYO16	23026	genome.wustl.edu	37	13	109318319	109318319	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015011.1	+1	validated	p.R16	0.978	56	0%	35	37.1%	0	-	-	-	-	NULL
MYO16	23026	genome.wustl.edu	37	13	109562376	109562376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015011.1	+1	validated	p.E579D	1.000	267	0%	116	29.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109672074	109672074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015011.1	+1	validated	p.L849I	0.945	77	0%	50	26%	0	-	possibly_damaging(0.909)	deleterious(0.02)	deleterious(0.745)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109704685	109704685	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015011.1	+1	validated	p.S948	1.000	165	0%	67	19.4%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
COL4A1	1282	genome.wustl.edu	37	13	110813632	110813632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001845.4	-1	reviewed	p.R1516Q	0.998	116	0%	155	36.1%	175	18.8%	unknown(0)	deleterious(0)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
COL4A1	1282	genome.wustl.edu	37	13	110839486	110839486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001845.4	-1	reviewed	p.P576L	1.000	61	0%	36	30.6%	54	18.5%	unknown(0)	deleterious(0.03)	-	HMMPfam_Collagen
TEX29	121793	genome.wustl.edu	37	13	111980561	111980561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152324.1	+1	predicted	p.D30E	1.000	147	0%	239	31.8%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TUBGCP3	10426	genome.wustl.edu	37	13	113173308	113173308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006322.4	-1	provisional	p.V644A	0.998	103	0%	168	25.6%	18	27.7%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_Spc97_Spc98
TUBGCP3	10426	genome.wustl.edu	37	13	113181728	113181728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006322.4	-1	provisional	p.S469L	0.997	119	0%	209	27.8%	12	33.3%	benign(0.102)	deleterious(0.04)	neutral(0.357)	HMMPfam_Spc97_Spc98
TUBGCP3	10426	genome.wustl.edu	37	13	113208474	113208474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006322.4	-1	provisional	p.R288K	1.000	89	0%	159	25.2%	11	45.4%	benign(0.003)	tolerated(0.52)	neutral(0.009)	HMMPfam_Spc97_Spc98
F7	2155	genome.wustl.edu	37	13	113772905	113772905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000131.3	+1	reviewed	p.F328L	0.997	18	0%	40	32.5%	0	-	benign(0.041)	tolerated(0.24)	neutral(0.040)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TFDP1	7027	genome.wustl.edu	37	13	114240088	114240088	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007111.4	+1	reviewed	e1-1	0.995	76	0%	157	38.2%	0	-	-	-	-	-
TFDP1	7027	genome.wustl.edu	37	13	114288276	114288276	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007111.4	+1	reviewed	p.I182	1.000	91	0%	122	29.5%	143	43.3%	-	-	-	HMMPfam_E2F_TDP,superfamily_SSF46785
RASA3	22821	genome.wustl.edu	37	13	114766322	114766322	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007368.2	-1	reviewed	p.F610C	1.000	113	0%	225	35.1%	4	0%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMPfam_PH,HMMSmart_PH,HMMSmart_RasGAP,superfamily_Rho_GAP,superfamily_SSF50729
CDC16	8881	genome.wustl.edu	37	13	115004902	115004902	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001078645.1	+1	reviewed	p.K106N	0.975	41	0%	95	34.7%	29	44.8%	benign(0.087)	tolerated(0.31)	neutral(0.034)	superfamily_TPR-like
CHAMP1	283489	genome.wustl.edu	37	13	115091142	115091142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032436.2	+1	validated	p.E609K	0.994	50	0%	34	20.6%	20	35%	benign(0.028)	tolerated(0.33)	neutral(0.026)	NULL
POTEG	404785	genome.wustl.edu	37	14	19553677	19553677	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005356.2	+1	validated	p.D87	0.000	244	0.4%	418	12.7%	1	100%	-	-	-	NULL
POTEG	404785	genome.wustl.edu	37	14	19559112	19559112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005356.2	+1	validated	p.L253S	0.005	1037	0%	780	7.6%	0	-	benign(0.004)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00248,superfamily_Ankyrin repeat
OR4Q3	441669	genome.wustl.edu	37	14	20215592	20215592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172194.1	+1	provisional	p.K2N	0.661	420	0%	251	13.1%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
OR4N2	390429	genome.wustl.edu	37	14	20296267	20296267	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004723.1	+1	provisional	p.V220	0.029	259	0%	137	12.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4K2	390431	genome.wustl.edu	37	14	20345066	20345066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005501.1	+1	provisional	p.L214V	0.953	382	0%	437	17.6%	0	-	possibly_damaging(0.535)	deleterious(0.01)	deleterious(0.587)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4K5	79317	genome.wustl.edu	37	14	20388897	20388897	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005483.1	+1	provisional	p.L44	0.998	477	0%	325	18.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4K5	79317	genome.wustl.edu	37	14	20389481	20389481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005483.1	+1	provisional	p.T239M	0.732	521	0%	298	17.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K15	81127	genome.wustl.edu	37	14	20444383	20444383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005486.1	+1	provisional	p.L236I	0.000	165	0%	78	33.3%	0	-	benign(0.155)	tolerated(0.5)	neutral(0.024)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K13	390433	genome.wustl.edu	37	14	20502016	20502016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004714.1	-1	provisional	p.R301I	0.000	60	1.7%	29	24.1%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	superfamily_SSF81321
OR4K13	390433	genome.wustl.edu	37	14	20502281	20502281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004714.1	-1	provisional	p.L213I	0.000	77	0%	89	27%	0	-	benign(0.372)	tolerated(0.28)	neutral(0.150)	HMMPfam_7tm_1,superfamily_SSF81321
OR11G2	390439	genome.wustl.edu	37	14	20665890	20665890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005503.1	+1	provisional	p.F132L	0.997	110	0%	126	34.1%	0	-	possibly_damaging(0.575)	tolerated(0.09)	deleterious(0.493)	HMMPfam_7tm_1,superfamily_SSF81321
OR11G2	390439	genome.wustl.edu	37	14	20665990	20665990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005503.1	+1	provisional	p.R166W	0.017	129	0%	143	32.9%	0	-	benign(0.016)	deleterious(0.03)	neutral(0.365)	HMMPfam_7tm_1,superfamily_SSF81321
OR11G2	390439	genome.wustl.edu	37	14	20666049	20666049	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005503.1	+1	provisional	p.N185K	0.166	141	0%	152	32.2%	0	-	benign(0.013)	tolerated(0.27)	neutral(0.034)	HMMPfam_7tm_1,superfamily_SSF81321
OR11G2	390439	genome.wustl.edu	37	14	20666089	20666089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005503.1	+1	provisional	p.V199I	0.000	166	0%	167	25.1%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
TEP1	7011	genome.wustl.edu	37	14	20841256	20841256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007110.4	-1	reviewed	p.A2289T	1.000	47	0%	39	10.3%	12	8.3%	probably_damaging(0.979)	tolerated(0.39)	neutral(0.438)	HMMSmart_SM00320,superfamily_WD40 repeat-like
RNASE10	338879	genome.wustl.edu	37	14	20979205	20979205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012975.1	+1	provisional	p.Y192C	0.155	62	0%	113	40.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
RNASE11	122651	genome.wustl.edu	37	14	21052097	21052097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145250.3	-1	validated	p.K179N	0.007	112	0%	56	35.7%	0	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	superfamily_RNase A-like
RNASE12	493901	genome.wustl.edu	37	14	21058834	21058834	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024822.2	-1	validated	p.E17*	0.926	156	0%	162	23.5%	0	-	-	-	-	NULL
EDDM3B	64184	genome.wustl.edu	37	14	21238342	21238342	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022360.4	+1	validated	p.L11	0.000	65	1.5%	36	36.1%	0	-	-	-	-	NULL
RNASE2	6036	genome.wustl.edu	37	14	21423938	21423938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002934.2	+1	validated	p.P3Q	0.096	69	0%	44	38.6%	4	0%	benign(0.383)	deleterious(0)	deleterious(0.567)	NULL
METTL17	64745	genome.wustl.edu	37	14	21464708	21464708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029991.1	+1	validated	p.K368T	0.999	52	0%	45	35.6%	66	50%	benign(0.002)	tolerated(0.71)	neutral(0.002)	HMMPfam_Rsm22
HNRNPC	3183	genome.wustl.edu	37	14	21702240	21702240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077442.1	-1	reviewed	p.S38L	0.999	144	0%	86	26.7%	415	43.6%	benign(0.235)	deleterious(0)	neutral(0.468)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
RPGRIP1	57096	genome.wustl.edu	37	14	21762905	21762905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020366.3	+1	reviewed	p.R52Q	0.987	141	0.7%	158	32.9%	0	-	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
RPGRIP1	57096	genome.wustl.edu	37	14	21780626	21780626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020366.3	+1	reviewed	p.R371L	1.000	111	0%	104	32.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RPGRIP1	57096	genome.wustl.edu	37	14	21780653	21780653	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020366.3	+1	reviewed	p.K380T	1.000	104	0%	95	14.7%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
CHD8	57680	genome.wustl.edu	37	14	21883117	21883117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020920.3	-1	reviewed	p.F389L	1.000	251	0%	133	38.3%	13	23%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
SALL2	6297	genome.wustl.edu	37	14	21991122	21991122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005407.1	-1	validated	p.E914K	1.000	85	0%	106	30.2%	11	45.4%	benign(0.074)	tolerated(0.09)	neutral(0.301)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL2	6297	genome.wustl.edu	37	14	21992717	21992717	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005407.1	-1	validated	p.F382C	1.000	66	0%	134	12.7%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR4E2	26686	genome.wustl.edu	37	14	22133482	22133482	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001912.1	+1	validated	p.F62	1.000	254	0%	164	27.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PSMB11	122706	genome.wustl.edu	37	14	23511732	23511732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099780.1	+1	validated	p.D100N	1.000	57	0%	79	36.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_SSF56235
CDH24	64403	genome.wustl.edu	37	14	23518888	23518888	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022478.3	-1	validated	p.S553	1.000	48	0%	74	37.8%	26	50%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
HOMEZ	57594	genome.wustl.edu	37	14	23745179	23745179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020834.2	-1	validated	p.R420W	1.000	242	0%	199	29.1%	26	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Homeodomain-like
MYH6	4624	genome.wustl.edu	37	14	23859509	23859509	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002471.3	-1	validated	p.I1163	0.939	59	0%	123	23.6%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH6	4624	genome.wustl.edu	37	14	23862683	23862683	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002471.3	-1	validated	p.I991	0.776	252	0%	348	29.3%	0	-	-	-	-	NULL
MYH6	4624	genome.wustl.edu	37	14	23863358	23863358	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002471.3	-1	validated	p.S868	0.368	151	0%	182	29.1%	0	-	-	-	-	NULL
MYH6	4624	genome.wustl.edu	37	14	23866254	23866254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002471.3	-1	validated	p.R696C	1.000	88	0%	94	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23884692	23884692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000257.2	-1	reviewed	p.K1727N	1.000	159	0%	203	34.5%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Myosin_tail_1
MYH7	4625	genome.wustl.edu	37	14	23886133	23886133	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000257.2	-1	reviewed	p.R1530*	1.000	77	0%	125	35.2%	0	-	-	-	-	HMMPfam_Myosin_tail_1
NGDN	25983	genome.wustl.edu	37	14	23944463	23944463	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042635.1	+1	validated	p.S76	0.943	156	0%	91	30.8%	46	19.5%	-	-	-	HMMPfam_Sas10_Utp3
AP1G2	8906	genome.wustl.edu	37	14	24033844	24033844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003917.2	-1	reviewed	p.R283Q	1.000	82	0%	108	38%	55	32.7%	benign(0.362)	deleterious(0)	deleterious(0.559)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
DHRS4L1	728635	genome.wustl.edu	37	14	24511937	24511937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082488.1	+1	provisional	p.S116L	0.002	179	0%	319	33.9%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
LRRC16B	90668	genome.wustl.edu	37	14	24528583	24528583	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138360.3	+1	validated	p.S577	0.949	66	4.5%	84	33.3%	2	100%	-	-	-	HMMSmart_SM00368,superfamily_RNI-like
LRRC16B	90668	genome.wustl.edu	37	14	24533551	24533551	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138360.3	+1	validated	p.S1026A	0.997	57	0%	72	34.7%	5	40%	unknown(0)	tolerated(0.5)	-	NULL
MDP1	145553	genome.wustl.edu	37	14	24683240	24683240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138476.2	-1	provisional	p.F174C	0.000	44	0%	83	33.7%	24	41.6%	unknown(0)	-	-	NULL
TGM1	7051	genome.wustl.edu	37	14	24729894	24729894	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000359.2	-1	reviewed	p.P173	0.004	114	0%	138	31.9%	3	0%	-	-	-	HMMPfam_Transglut_N,superfamily_Ig_E-set
RABGGTA	5875	genome.wustl.edu	37	14	24738826	24738826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004581.3	-1	validated	p.D168Y	1.000	63	0%	122	11.5%	43	6.9%	benign(0.127)	deleterious(0.03)	neutral(0.375)	HMMPfam_PPTA,superfamily_Prenyl_trans
DHRS1	115817	genome.wustl.edu	37	14	24766024	24766024	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136050.2	-1	reviewed	p.R72*	0.007	96	0%	163	34.4%	96	8.3%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
LTB4R	1241	genome.wustl.edu	37	14	24785548	24785548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143919.2	+1	validated	p.A231T	0.994	11	0%	19	26.3%	12	16.6%	benign(0.334)	tolerated(0.26)	neutral(0.139)	HMMPfam_7tm_1,superfamily_SSF81321
ADCY4	196883	genome.wustl.edu	37	14	24792231	24792231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139247.2	-1	reviewed	p.E741K	1.000	30	0%	54	20.4%	3	0%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
ADCY4	196883	genome.wustl.edu	37	14	24793333	24793333	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139247.2	-1	reviewed	p.G661*	0.830	66	0%	109	22%	6	33.3%	-	-	-	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24884798	24884798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025081.2	+1	validated	p.E1281D	0.034	47	0%	64	42.2%	14	42.8%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24884933	24884933	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025081.2	+1	validated	p.G1326	0.998	102	0%	145	23.4%	25	44%	-	-	-	superfamily_Ribonuclease H-like
NOVA1	4857	genome.wustl.edu	37	14	26949194	26949194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002515.2	-1	reviewed	p.R146C	1.000	243	0%	160	36.2%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FOXG1	2290	genome.wustl.edu	37	14	29237880	29237880	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005249.3	+1	reviewed	p.T465	1.000	92	0%	174	28.2%	16	56.2%	-	-	-	NULL
G2E3	55632	genome.wustl.edu	37	14	31074788	31074788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017769.3	+1	validated	p.R363I	0.356	81	0%	54	20.4%	3	0%	benign(0.167)	deleterious(0.03)	neutral(0.380)	superfamily_HECT
SCFD1	23256	genome.wustl.edu	37	14	31107337	31107337	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016106.2	+1	validated	p.R107*	1.000	70	0%	29	24.1%	7	28.5%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
SCFD1	23256	genome.wustl.edu	37	14	31169431	31169431	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016106.2	+1	validated	p.I459	1.000	156	0%	108	25%	26	3.8%	-	-	-	HMMPfam_Sec1,superfamily_Sec1-like
COCH	1690	genome.wustl.edu	37	14	31354788	31354788	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135058.1	+1	reviewed	p.E308*	1.000	297	0%	212	36.3%	3	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
STRN3	29966	genome.wustl.edu	37	14	31416358	31416358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083893.1	-1	validated	p.K218N	1.000	168	0%	120	33.3%	11	54.5%	possibly_damaging(0.699)	tolerated(0.34)	neutral(0.275)	NULL
STRN3	29966	genome.wustl.edu	37	14	31424885	31424885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083893.1	-1	validated	p.K134R	1.000	191	0%	105	38.1%	19	63.1%	probably_damaging(1)	tolerated(0.47)	deleterious(0.511)	HMMPfam_Striatin
HECTD1	25831	genome.wustl.edu	37	14	31572204	31572204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015382.2	-1	validated	p.L2490I	1.000	145	0%	79	36.7%	40	60%	possibly_damaging(0.936)	tolerated(0.36)	neutral(0.402)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECTD1	25831	genome.wustl.edu	37	14	31576352	31576352	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015382.2	-1	validated	p.T2242	0.927	62	0%	47	31.9%	57	24.5%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECTD1	25831	genome.wustl.edu	37	14	31618328	31618328	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015382.2	-1	validated	p.R732*	1.000	248	0.4%	148	31.8%	8	25%	-	-	-	superfamily_ARM repeat
HECTD1	25831	genome.wustl.edu	37	14	31647385	31647385	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015382.2	-1	validated	p.E72	1.000	132	0%	79	10.1%	13	7.6%	-	-	-	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31790740	31790740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015473.2	-1	validated	p.P1019S	1.000	47	0%	27	37%	10	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_ARM repeat
HEATR5A	25938	genome.wustl.edu	37	14	31817007	31817007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015473.2	-1	validated	p.C646G	1.000	58	0%	76	25%	5	80%	benign(0.006)	tolerated(0.36)	neutral(0.020)	superfamily_ARM repeat
ARHGAP5	394	genome.wustl.edu	37	14	32563452	32563452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030055.1	+1	reviewed	p.R1193C	1.000	105	0%	61	26.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33165284	33165284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004274.4	+1	reviewed	p.M990V	1.000	135	0%	83	34.9%	8	37.5%	probably_damaging(0.973)	deleterious(0.03)	deleterious(0.779)	HMMSmart_SM00150,superfamily_Spectrin repeat
AKAP6	9472	genome.wustl.edu	37	14	33290843	33290843	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004274.4	+1	reviewed	p.S1275*	0.029	76	0%	40	35%	12	66.6%	-	-	-	NULL
NPAS3	64067	genome.wustl.edu	37	14	33525145	33525145	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000356141	+1	known	p.E29*	1.000	121	0%	79	35.4%	2	0%	-	-	-	NULL
SNX6	58533	genome.wustl.edu	37	14	35062322	35062322	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152233.2	-1	reviewed	p.F228C	1.000	143	0%	109	34.9%	61	49.1%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Vps5
CFL2	1073	genome.wustl.edu	37	14	35182132	35182132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021914.7	-1	reviewed	p.S147L	0.535	206	0%	382	30.1%	20	20%	benign(0.072)	tolerated(0.24)	neutral(0.042)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
CFL2	1073	genome.wustl.edu	37	14	35182662	35182662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021914.7	-1	reviewed	p.L37I	1.000	186	0%	408	27.5%	15	33.3%	benign(0.388)	tolerated(0.32)	neutral(0.148)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
BAZ1A	11177	genome.wustl.edu	37	14	35222876	35222876	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013448.2	-1	validated	p.S1503	0.949	206	0%	144	31.2%	17	58.8%	-	-	-	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
SRP54	6729	genome.wustl.edu	37	14	35468845	35468845	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003136.3	+1	validated	p.E54*	1.000	124	0%	105	33.3%	27	7.4%	-	-	-	HMMPfam_SRP54_N,superfamily_Domain of the SRP/SRP receptor G-proteins
SRP54	6729	genome.wustl.edu	37	14	35488243	35488243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003136.3	+1	validated	p.K373N	1.000	201	0%	136	35.3%	32	25%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_SRP_SPB,superfamily_Signal peptide-binding domain
PPP2R3C	55012	genome.wustl.edu	37	14	35554877	35554877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017917.2	-1	provisional	p.L427F	1.000	155	0%	175	30.3%	29	44.8%	benign(0.011)	tolerated(0.43)	neutral(0.014)	NULL
INSM2	84684	genome.wustl.edu	37	14	36005038	36005038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032594.3	+1	validated	p.C527Y	1.000	32	0%	48	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BRMS1L	84312	genome.wustl.edu	37	14	36302296	36302296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032352.3	+1	reviewed	p.R116C	1.000	122	0%	145	29.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sds3
FOXA1	3169	genome.wustl.edu	37	14	38061344	38061344	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004496.2	-1	reviewed	p.Q215	1.000	40	0%	92	31.5%	4	100%	-	-	-	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_2,superfamily_SSF46785
FOXA1	3169	genome.wustl.edu	37	14	38061907	38061907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004496.2	-1	reviewed	p.S28P	1.000	153	0%	303	35.3%	4	100%	benign(0.132)	tolerated(0.14)	neutral(0.261)	HMMPfam_Fork_head_N
CLEC14A	161198	genome.wustl.edu	37	14	38724910	38724910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175060.1	-1	provisional	p.E106D	0.955	13	0%	26	42.3%	7	0%	possibly_damaging(0.893)	tolerated(0.24)	neutral(0.389)	HMMSmart_CLECT,superfamily_C-type_lectin_fold
MIA2	117153	genome.wustl.edu	37	14	39721971	39721971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054024.3	+1	validated	p.E529D	0.000	94	0%	50	30%	1	0%	benign(0.313)	deleterious(0.05)	neutral(0.443)	NULL
CTAGE5	4253	genome.wustl.edu	37	14	39788453	39788453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005930.3	+1	validated	p.D501Y	1.000	183	0%	123	24.4%	32	34.3%	possibly_damaging(0.655)	deleterious(0.01)	deleterious(0.636)	NULL
LRFN5	145581	genome.wustl.edu	37	14	42356316	42356316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152447.3	+1	validated	p.P163H	1.000	108	0%	78	20.5%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LRR_1,superfamily_SSF52058
LRFN5	145581	genome.wustl.edu	37	14	42357144	42357144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152447.3	+1	validated	p.R439I	1.000	55	0%	49	26.5%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_fn3,superfamily_FN_III-like
FSCB	84075	genome.wustl.edu	37	14	44973756	44973756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032135.3	-1	validated	p.S812I	0.000	82	0%	73	32.9%	0	-	possibly_damaging(0.741)	deleterious(0.01)	deleterious(0.677)	NULL
FSCB	84075	genome.wustl.edu	37	14	44973916	44973916	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032135.3	-1	validated	p.E759*	0.021	43	0%	38	26.3%	0	-	-	-	-	NULL
FAM179B	23116	genome.wustl.edu	37	14	45468592	45468592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015091.2	+1	validated	p.L744I	0.981	145	0%	126	29.4%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_ARM repeat
FAM179B	23116	genome.wustl.edu	37	14	45542737	45542737	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015091.2	+1	validated	p.L1712	0.725	99	0%	104	31.7%	3	33.3%	-	-	-	NULL
RPL10L	140801	genome.wustl.edu	37	14	47120502	47120502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080746.2	-1	reviewed	p.E146D	1.000	73	0%	110	27.3%	0	-	benign(0.036)	tolerated(0.6)	neutral(0.006)	HMMPfam_Ribosomal_L16,superfamily_Ribosomal_L10e/L16
MDGA2	161357	genome.wustl.edu	37	14	47314984	47314984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113498.1	-1	validated	p.D923Y	1.000	128	0%	132	35.6%	0	-	possibly_damaging(0.697)	deleterious(0.05)	deleterious(0.595)	NULL
MDGA2	161357	genome.wustl.edu	37	14	47504324	47504324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113498.1	-1	validated	p.R501M	1.000	143	0%	90	36.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
MDGA2	161357	genome.wustl.edu	37	14	47530617	47530617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113498.1	-1	validated	p.R385W	1.000	116	0%	32	18.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
MGAT2	4247	genome.wustl.edu	37	14	50089217	50089220	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	CTAA	CTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002408.3	+1	reviewed	p.T412fs	0.982:0.985:0.001:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_MGAT2
DNAAF2	55172	genome.wustl.edu	37	14	50100132	50100132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018139.2	-1	reviewed	p.K579T	0.717	121	0%	229	10.9%	18	11.1%	probably_damaging(0.999)	tolerated(0.74)	deleterious(0.492)	NULL
KLHDC2	23588	genome.wustl.edu	37	14	50244959	50244959	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014315.2	+1	validated	p.F177	1.000	403	0%	247	31.2%	43	41.8%	-	-	-	superfamily_Galactose oxidase central domain
NEMF	9147	genome.wustl.edu	37	14	50256258	50256258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004713.3	-1	validated	p.D885Y	1.000	288	0%	108	30.6%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NEMF	9147	genome.wustl.edu	37	14	50267382	50267382	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004713.3	-1	validated	p.E710*	1.000	202	0%	164	26.2%	17	0%	-	-	-	NULL
SOS2	6655	genome.wustl.edu	37	14	50600912	50600912	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006939.2	-1	validated	p.E1002*	1.000	198	0%	93	26.9%	9	22.2%	-	-	-	HMMSmart_RasGEF,superfamily_Ras_GEF
SOS2	6655	genome.wustl.edu	37	14	50655256	50655256	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006939.2	-1	validated	p.R225*	1.000	86	0%	50	32%	2	50%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
MAP4K5	11183	genome.wustl.edu	37	14	50906781	50906781	+	Missense_Mutation	SNP	C	C	T	rs55997280		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006575.3	-1	reviewed	p.R552Q	1.000	168	0%	56	23.2%	12	41.6%	possibly_damaging(0.827)	tolerated(0.25)	neutral(0.351)	HMMPfam_CNH,HMMSmart_SM00036
NIN	51199	genome.wustl.edu	37	14	51223677	51223677	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020921.3	-1	reviewed	p.I1357	0.000	145	0.7%	108	22.2%	2	0%	-	-	-	NULL
NIN	51199	genome.wustl.edu	37	14	51224434	51224434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020921.3	-1	reviewed	p.S1105Y	0.000	169	0%	179	31.8%	1	0%	benign(0.15)	deleterious(0.01)	neutral(0.419)	NULL
PYGL	5836	genome.wustl.edu	37	14	51404532	51404532	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002863.4	-1	reviewed	p.E89D	1.000	144	0%	160	26.3%	62	62.9%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	superfamily_SSF53756
TRIM9	114088	genome.wustl.edu	37	14	51446043	51446043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000338969	-1	known	p.R792K	0.005	76	0%	30	20%	0	-	benign(0)	tolerated(1)	-	NULL
GNG2	54331	genome.wustl.edu	37	14	52433295	52433295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053064.3	+1	validated	p.D36Y	1.000	70	0%	48	29.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
C14orf166	51637	genome.wustl.edu	37	14	52458135	52458135	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016039.2	+1	validated	p.S54	0.419	98	0%	161	38.5%	161	32.2%	-	-	-	HMMPfam_RLL
NID2	22795	genome.wustl.edu	37	14	52507395	52507395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007361.3	-1	validated	p.K667M	1.000	228	0%	105	26.7%	7	0%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
NID2	22795	genome.wustl.edu	37	14	52520585	52520585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007361.3	-1	validated	p.G381C	0.000	145	0%	75	26.7%	6	0%	possibly_damaging(0.859)	tolerated(0.07)	deleterious(0.651)	NULL
PTGDR	5729	genome.wustl.edu	37	14	52734862	52734862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000953.2	+1	reviewed	p.F110L	1.000	59	0%	106	35.8%	1	100%	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMPfam_7tm_1,superfamily_SSF81321
PSMC6	5706	genome.wustl.edu	37	14	53185743	53185743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002806.3	+1	reviewed	p.R269I	1.000	191	0%	169	34.3%	87	43.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNPNAT1	64841	genome.wustl.edu	37	14	53251323	53251323	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198066.3	-1	validated	p.E16*	1.000	100	0%	138	29%	16	56.2%	-	-	-	NULL
DDHD1	80821	genome.wustl.edu	37	14	53521254	53521254	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030637.2	-1	validated	p.S780*	0.005	131	0%	96	31.2%	8	37.5%	-	-	-	HMMPfam_DDHD
DDHD1	80821	genome.wustl.edu	37	14	53522414	53522414	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030637.2	-1	validated	p.E737*	1.000	232	0%	171	33.3%	3	66.6%	-	-	-	HMMPfam_DDHD
DDHD1	80821	genome.wustl.edu	37	14	53529787	53529787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030637.2	-1	validated	p.M547T	1.000	122	0%	134	9.7%	4	0%	possibly_damaging(0.672)	deleterious(0)	deleterious(0.682)	NULL
BMP4	652	genome.wustl.edu	37	14	54417022	54417022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001202.3	-1	reviewed	p.D319N	1.000	70	0%	118	33.1%	5	0%	possibly_damaging(0.62)	deleterious(0)	deleterious(0.660)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
CDKN3	1033	genome.wustl.edu	37	14	54866653	54866653	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005192.3	+1	reviewed	p.E17	1.000	90	0%	193	11.9%	24	16.6%	-	-	-	HMMPfam_CDKN3
WDHD1	11169	genome.wustl.edu	37	14	55411081	55411081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007086.2	-1	reviewed	p.R1053Q	1.000	371	0%	229	30.1%	2	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_HMG,superfamily_HMG-box,superfamily_WD40_like
WDHD1	11169	genome.wustl.edu	37	14	55423802	55423802	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007086.2	-1	reviewed	p.E956*	0.815	193	0%	99	37.4%	2	0%	-	-	-	superfamily_WD40_like
KTN1	3895	genome.wustl.edu	37	14	56078857	56078857	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079521.1	+1	validated	p.E31*	1.000	120	0%	73	27.4%	7	14.2%	-	-	-	NULL
KTN1	3895	genome.wustl.edu	37	14	56133986	56133986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079521.1	+1	validated	p.E1069K	1.000	200	0%	81	28.4%	45	77.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
KTN1	3895	genome.wustl.edu	37	14	56138548	56138548	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079521.1	+1	validated	p.N1162H	1.000	140	0%	75	29.3%	78	11.5%	possibly_damaging(0.753)	deleterious(0.03)	deleterious(0.641)	NULL
MUDENG	55745	genome.wustl.edu	37	14	57741320	57741320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018229.3	+1	validated	p.G145C	0.052	98	0%	122	27%	7	42.8%	possibly_damaging(0.888)	tolerated(0.1)	deleterious(0.634)	NULL
PSMA3	5684	genome.wustl.edu	37	14	58737155	58737155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002788.2	+1	reviewed	p.E204K	1.000	200	0%	114	23.7%	180	41.6%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
DACT1	51339	genome.wustl.edu	37	14	59107453	59107453	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016651.5	+1	validated	e2-1	1.000	58	0%	129	27.9%	0	-	-	-	-	-
DAAM1	23002	genome.wustl.edu	37	14	59806864	59806864	+	Missense_Mutation	SNP	C	C	T	rs181718144	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014992.1	+1	reviewed	p.R691W	1.000	147	0%	72	38.9%	13	61.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
C14orf38	729665	genome.wustl.edu	37	14	60030574	60030574	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000281581	-1	known	p.N242H	0.000	224	0%	108	28.7%	0	-	possibly_damaging(0.644)	tolerated(0.17)	neutral(0.284)	NULL
C14orf38	729665	genome.wustl.edu	37	14	60035015	60035015	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000281581	-1	known	p.E147*	0.001	427	0%	310	27.1%	0	-	-	-	-	NULL
RTN1	6252	genome.wustl.edu	37	14	60072155	60072155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021136.2	-1	reviewed	p.F681L	0.976	51	0%	45	22.2%	13	7.6%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_Reticulon
LOC100286978	100286978	genome.wustl.edu	37	14	60212419	60212419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343277.1	+1	model	p.P83S	0.000	119	0%	70	25.7%	0	-	-	-	-	NULL
RTN1	6252	genome.wustl.edu	37	14	60212801	60212801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021136.2	-1	reviewed	p.E214K	0.000	282	0%	152	25.7%	1	0%	benign(0)	tolerated(0.47)	neutral(0.011)	NULL
DHRS7	51635	genome.wustl.edu	37	14	60622777	60622777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016029.2	-1	validated	p.S76F	0.992	147	0%	111	30.6%	180	48.8%	possibly_damaging(0.774)	deleterious(0.01)	deleterious(0.694)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
C14orf39	317761	genome.wustl.edu	37	14	60935176	60935176	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174978.2	-1	validated	p.E252*	1.000	282	0%	106	22.6%	0	-	-	-	-	NULL
C14orf39	317761	genome.wustl.edu	37	14	60951623	60951623	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174978.2	-1	validated	p.E28*	1.000	204	0%	392	39.3%	0	-	-	-	-	NULL
SIX1	6495	genome.wustl.edu	37	14	61113285	61113285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005982.3	-1	reviewed	p.E191K	1.000	114	0%	210	31.4%	9	44.4%	benign(0.35)	deleterious(0)	deleterious(0.555)	superfamily_Homeodomain-like
SIX1	6495	genome.wustl.edu	37	14	61115710	61115710	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005982.3	-1	reviewed	p.L66	1.000	47	0%	89	37.1%	17	52.9%	-	-	-	NULL
TRMT5	57570	genome.wustl.edu	37	14	61446182	61446182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020810.2	-1	validated	p.I145T	0.923	164	0%	224	29.5%	9	22.2%	benign(0.018)	tolerated(0.09)	neutral(0.297)	NULL
HIF1A	3091	genome.wustl.edu	37	14	62188361	62188361	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001530.3	+1	validated	p.G121*	1.000	241	0.4%	100	19%	46	2.1%	-	-	-	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)
SNAPC1	6617	genome.wustl.edu	37	14	62245592	62245592	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003082.3	+1	validated	p.A263	0.921	183	0%	140	31.4%	7	42.8%	-	-	-	NULL
KCNH5	27133	genome.wustl.edu	37	14	63175013	63175013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139318.3	-1	reviewed	p.G727D	0.636	87	0%	91	34.1%	2	0%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
KCNH5	27133	genome.wustl.edu	37	14	63316371	63316371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139318.3	-1	reviewed	p.K523N	1.000	149	0%	133	31.6%	0	-	possibly_damaging(0.747)	tolerated(0.18)	neutral(0.330)	superfamily_cAMP-binding domain-like
KCNH5	27133	genome.wustl.edu	37	14	63416839	63416839	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000453406	-1	known	p.N403H	0.000	64	0%	35	25.7%	0	-	benign(0.004)	deleterious(0.02)	neutral(0.383)	superfamily_SSF81324
KCNH5	27133	genome.wustl.edu	37	14	63447862	63447862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139318.3	-1	reviewed	p.L224I	1.000	134	0%	62	25.8%	2	0%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	superfamily_Voltage-gated potassium channels
SYNE2	23224	genome.wustl.edu	37	14	64445596	64445596	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182914.2	+1	reviewed	p.F478C	0.000	118	0%	101	24.8%	0	-	probably_damaging(0.987)	-	-	superfamily_Spectrin
SYNE2	23224	genome.wustl.edu	37	14	64537607	64537607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182914.2	+1	reviewed	p.S3559Y	0.052	57	0%	41	41.5%	0	-	probably_damaging(0.998)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64687201	64687201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182914.2	+1	reviewed	p.V6636A	0.997	75	0%	61	11.5%	34	2.9%	unknown(0)	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ENSG00000249603	0	genome.wustl.edu	37	14	65067446	65067446	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000509438	+1	novel	NULL	0.297	109	0%	168	29.2%	0	-	-	-	-	-
PLEKHG3	26030	genome.wustl.edu	37	14	65210241	65210241	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015549.1	+1	validated	p.E1104	0.566	24	0%	36	36.1%	38	36.8%	-	-	-	NULL
RAB15	376267	genome.wustl.edu	37	14	65417855	65417855	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198686.2	-1	validated	p.V87	1.000	60	0%	39	25.6%	10	60%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
FUT8	2530	genome.wustl.edu	37	14	66083014	66083014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178154.1	+1	reviewed	p.K135N	1.000	67	0%	57	31.6%	15	26.6%	benign(0.078)	tolerated(0.5)	neutral(0.015)	NULL
FUT8	2530	genome.wustl.edu	37	14	66199966	66199966	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178154.1	+1	reviewed	p.F426C	1.000	107	0%	44	29.5%	27	59.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GPHN	10243	genome.wustl.edu	37	14	67589024	67589024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020806.4	+1	reviewed	p.R560C	1.000	136	0%	108	34.3%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth
MPP5	64398	genome.wustl.edu	37	14	67768806	67768806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022474.2	+1	validated	p.R258C	1.000	162	0%	84	32.1%	10	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PDZ,superfamily_PDZ domain-like
MPP5	64398	genome.wustl.edu	37	14	67787844	67787844	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022474.2	+1	validated	p.F536	0.988	174	0%	124	29.8%	21	38%	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
PIGH	5283	genome.wustl.edu	37	14	68060598	68060598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004569.3	-1	reviewed	p.K84N	1.000	106	0%	127	37.8%	25	32%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
RDH12	145226	genome.wustl.edu	37	14	68191196	68191196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152443.2	+1	reviewed	p.F25L	0.995	394	0%	317	28.4%	0	-	benign(0.037)	tolerated(0.31)	neutral(0.029)	NULL
KIAA0247	9766	genome.wustl.edu	37	14	70177688	70177688	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014734.3	+1	validated	p.E302*	1.000	166	0%	138	29.7%	28	32.1%	-	-	-	NULL
SRSF5	6430	genome.wustl.edu	37	14	70235391	70235391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039465.1	+1	validated	p.R66M	1.000	260	0%	558	29.9%	395	36.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SRSF5	6430	genome.wustl.edu	37	14	70237773	70237773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039465.1	+1	validated	p.E168K	1.000	324	0%	375	34.1%	174	36.7%	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SRSF5	6430	genome.wustl.edu	37	14	70237967	70237967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039465.1	+1	validated	p.R203Q	0.999	112	0%	116	26.7%	468	42.3%	unknown(0)	tolerated(0.14)	-	superfamily_RNA-binding domain RBD
SLC8A3	6547	genome.wustl.edu	37	14	70634017	70634017	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183002.1	-1	reviewed	p.E375*	1.000	71	0%	44	36.4%	0	-	-	-	-	NULL
ENSG00000235812	0	genome.wustl.edu	37	14	70713056	70713056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000433248	-1	known	p.R271M	0.000	67	0%	87	32.2%	0	-	-	-	-	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
ADAM20	8748	genome.wustl.edu	37	14	70991384	70991384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003814.4	-1	reviewed	p.A81T	0.006	67	0%	42	38.1%	0	-	benign(0.004)	tolerated(0.58)	neutral(0.005)	HMMPfam_Pep_M12B_propep
MED6	10001	genome.wustl.edu	37	14	71063403	71063403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005466.2	-1	validated	p.E67K	1.000	77	0%	147	42.2%	38	39.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MED6
MAP3K9	4293	genome.wustl.edu	37	14	71199707	71199707	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033141.2	-1	validated	p.R807	0.912	54	0%	80	33.8%	3	33.3%	-	-	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72055106	72055106	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015556.1	+1	provisional	p.R173*	1.000	71	0%	38	26.3%	8	37.5%	-	-	-	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72055247	72055247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015556.1	+1	provisional	p.E220K	1.000	103	0%	51	19.6%	7	28.5%	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72139094	72139094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015556.1	+1	provisional	p.E953D	1.000	82	0%	83	28.9%	27	37%	possibly_damaging(0.678)	tolerated(0.27)	neutral(0.275)	HMMPfam_PDZ,superfamily_PDZ domain-like
DPF3	8110	genome.wustl.edu	37	14	73198531	73198531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012074.3	-1	provisional	p.S138I	0.927	110	0%	104	34.6%	1	0%	benign(0.41)	tolerated(0.07)	neutral(0.452)	NULL
ZFYVE1	53349	genome.wustl.edu	37	14	73464710	73464710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021260.1	-1	reviewed	p.R266Q	1.000	89	0%	52	26.9%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZFYVE1	53349	genome.wustl.edu	37	14	73491166	73491166	+	Missense_Mutation	SNP	C	C	T	rs147351573	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021260.1	-1	reviewed	p.M17I	0.870	79	0%	106	15.1%	15	6.6%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
HEATR4	399671	genome.wustl.edu	37	14	73961944	73961944	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203309.1	-1	provisional	p.E878*	0.225	218	0%	323	32.5%	2	50%	-	-	-	NULL
PTGR2	145482	genome.wustl.edu	37	14	74340773	74340773	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152444.2	+1	reviewed	p.W68*	1.000	189	0.5%	177	27.1%	2	0%	-	-	-	superfamily_GroES-like
PTGR2	145482	genome.wustl.edu	37	14	74347957	74347957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152444.2	+1	reviewed	p.L301I	0.977	120	0%	136	33.1%	1	100%	benign(0.026)	tolerated(0.23)	neutral(0.043)	superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains
ZNF410	57862	genome.wustl.edu	37	14	74360554	74360554	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021188.1	+1	provisional	p.E30*	1.000	162	0%	167	36.5%	27	48.1%	-	-	-	NULL
FAM161B	145483	genome.wustl.edu	37	14	74413218	74413218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152445.1	-1	predicted	p.E49K	0.958	66	0%	115	30.4%	3	100%	possibly_damaging(0.489)	deleterious(0.02)	deleterious(0.545)	NULL
C14orf45	80127	genome.wustl.edu	37	14	74516840	74516840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025057.2	+1	validated	p.D410Y	1.000	57	0%	38	28.9%	3	66.6%	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	NULL
KIAA0317	9870	genome.wustl.edu	37	14	75136387	75136387	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039479.1	-1	validated	p.E627*	1.000	276	0%	151	37.1%	8	12.5%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
KIAA0317	9870	genome.wustl.edu	37	14	75139605	75139605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039479.1	-1	validated	p.R451W	1.000	107	0%	87	40.2%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0317	9870	genome.wustl.edu	37	14	75151355	75151355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039479.1	-1	validated	p.F15L	1.000	34	0%	22	40.9%	7	42.8%	benign(0.005)	tolerated(0.32)	neutral(0.024)	NULL
MLH3	27030	genome.wustl.edu	37	14	75515173	75515173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040108.1	-1	reviewed	p.N396H	1.000	97	0%	143	30.1%	0	-	unknown(0)	deleterious(0.01)	-	NULL
ZC2HC1C	79696	genome.wustl.edu	37	14	75538399	75538399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024643.2	+1	validated	p.D375Y	0.009	29	0%	43	32.6%	1	0%	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	NULL
TTLL5	23093	genome.wustl.edu	37	14	76286476	76286476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015072.4	+1	reviewed	p.E1100K	0.965	58	1.7%	34	44.1%	19	47.3%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
TGFB3	7043	genome.wustl.edu	37	14	76446913	76446913	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003239.2	-1	reviewed	p.F108	1.000	176	0%	257	31.1%	35	42.8%	-	-	-	HMMPfam_TGFb_propeptide
IFT43	112752	genome.wustl.edu	37	14	76549621	76549621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052873.2	+1	validated	p.E171K	1.000	120	0%	98	33.7%	77	48%	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	NULL
C14orf118	55668	genome.wustl.edu	37	14	76621242	76621242	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017926.2	+1	validated	p.S179*	1.000	83	0%	120	25.8%	10	0%	-	-	-	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77294739	77294739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194287.2	+1	validated	p.S65L	0.867	66	0%	60	25%	0	-	probably_damaging(0.958)	tolerated(0.28)	neutral(0.433)	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77297559	77297559	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194287.2	+1	validated	p.F77L	0.364	85	0%	99	14.1%	0	-	benign(0.005)	tolerated(0.68)	neutral(0.002)	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77311207	77311207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_194287.2	+1	validated	p.F230L	1.000	125	0%	91	29.7%	1	0%	unknown(0)	tolerated(0.08)	-	HMMPfam_LRR_1,HMMSmart_SM00368,superfamily_RNI-like
POMT2	29954	genome.wustl.edu	37	14	77778319	77778319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013382.5	-1	reviewed	p.F102L	1.000	124	0%	122	27.9%	12	58.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	PatternScan_SERPIN,HMMPfam_PMT
SAMD15	161394	genome.wustl.edu	37	14	77844779	77844779	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010860.1	+1	provisional	p.E340*	0.000	47	0%	74	20.3%	0	-	-	-	-	NULL
C14orf133	63894	genome.wustl.edu	37	14	77895373	77895373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022067.2	-1	provisional	p.F444L	1.000	71	0%	50	26%	43	48.8%	benign(0.111)	tolerated(0.55)	neutral(0.015)	HMMPfam_Golgin_A5
ISM2	145501	genome.wustl.edu	37	14	77942412	77942412	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199296.2	-1	reviewed	p.F414	1.000	17	0%	28	42.9%	0	-	-	-	-	HMMPfam_AMOP,HMMSmart_SM00723
SPTLC2	9517	genome.wustl.edu	37	14	78063663	78063663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004863.2	-1	validated	p.E65*	1.000	179	0%	129	35.7%	9	0%	-	-	-	NULL
ADCK1	57143	genome.wustl.edu	37	14	78353434	78353434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020421.3	+1	validated	p.I142V	1.000	108	0%	97	12.4%	14	14.2%	benign(0)	tolerated(1)	-	HMMPfam_ABC1,superfamily_Kinase_like
DIO2	1734	genome.wustl.edu	37	14	80669113	80669113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007023.2	-1	reviewed	p.F283L	1.000	112	0%	68	38.2%	3	0%	probably_damaging(0.974)	tolerated(0.62)	neutral(0.420)	HMMPfam_T4_deiodinase
CEP128	145508	genome.wustl.edu	37	14	81244383	81244383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152446.3	-1	validated	p.S740I	0.881	83	0%	68	35.3%	0	-	possibly_damaging(0.903)	deleterious(0.05)	deleterious(0.704)	NULL
CEP128	145508	genome.wustl.edu	37	14	81251670	81251670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152446.3	-1	validated	p.E594K	0.997	225	0%	163	14.7%	1	100%	unknown(0)	tolerated(0.45)	-	NULL
DYNLL1P1	246720	genome.wustl.edu	37	14	81712677	81712677	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000380761	-1	known	p.Y77	1.000	43	0%	101	15.8%	7	0%	-	-	-	HMMPfam_Dynein_light,superfamily_DLC
KCNK10	54207	genome.wustl.edu	37	14	88652107	88652107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138317.2	-1	reviewed	p.K468N	1.000	129	0%	219	26.9%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
KCNK10	54207	genome.wustl.edu	37	14	88652167	88652167	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138317.2	-1	reviewed	p.I448	1.000	102	0%	166	36.7%	0	-	-	-	-	NULL
KCNK10	54207	genome.wustl.edu	37	14	88658647	88658647	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138317.2	-1	reviewed	p.I263	0.012	83	0%	91	28.6%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
PTPN21	11099	genome.wustl.edu	37	14	88951486	88951486	+	Missense_Mutation	SNP	C	C	T	rs139338619	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007039.3	-1	reviewed	p.V338M	1.000	194	0%	244	33.6%	5	60%	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_PH domain-like
PTPN21	11099	genome.wustl.edu	37	14	88974355	88974355	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007039.3	-1	reviewed	p.Y120*	1.000	135	0%	93	31.2%	2	50%	-	-	-	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
ZC3H14	79882	genome.wustl.edu	37	14	89042217	89042217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024824.4	+1	validated	p.K352N	1.000	169	0%	153	26.8%	37	40.5%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
EML5	161436	genome.wustl.edu	37	14	89110800	89110800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183387.2	-1	validated	p.G1362S	1.000	244	0%	102	23.5%	0	-	benign(0.002)	tolerated(0.75)	neutral(0.002)	HMMPfam_HELP
EML5	161436	genome.wustl.edu	37	14	89171222	89171222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183387.2	-1	validated	p.R678Q	0.996	261	0%	70	35.7%	0	-	benign(0.164)	tolerated(0.47)	neutral(0.026)	HMMPfam_HELP
EML5	161436	genome.wustl.edu	37	14	89202903	89202903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_183387.2	-1	validated	p.S285Y	1.000	124	0%	179	30.7%	0	-	benign(0.208)	tolerated(0.36)	neutral(0.040)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
TTC8	123016	genome.wustl.edu	37	14	89310167	89310167	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144596.2	+1	reviewed	p.I199	0.990	216	0%	61	23%	11	9%	possibly_damaging(0.578)	-	-	NULL
EFCAB11	90141	genome.wustl.edu	37	14	90263628	90263628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145231.2	-1	validated	p.D151Y	1.000	145	0%	134	21.6%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand
EFCAB11	90141	genome.wustl.edu	37	14	90397906	90397906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145231.2	-1	validated	p.R130M	0.988	186	0%	116	25%	13	15.3%	probably_damaging(0.961)	tolerated(0.05)	deleterious(0.750)	superfamily_EF-hand
EFCAB11	90141	genome.wustl.edu	37	14	90420315	90420315	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145231.2	-1	validated	p.G36*	1.000	219	0%	392	25.5%	7	14.2%	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
KCNK13	56659	genome.wustl.edu	37	14	90650504	90650504	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022054.2	+1	reviewed	p.I128	0.999	120	0%	121	28.9%	0	-	-	-	-	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
KCNK13	56659	genome.wustl.edu	37	14	90651281	90651281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022054.2	+1	reviewed	p.F387L	1.000	17	0%	19	42.1%	3	0%	benign(0.072)	tolerated(0.34)	neutral(0.028)	NULL
C14orf102	55051	genome.wustl.edu	37	14	90754745	90754745	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017970.2	-1	validated	p.K992Q	0.000	175	0%	154	34.4%	15	60%	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
C14orf102	55051	genome.wustl.edu	37	14	90769176	90769176	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017970.2	-1	validated	p.S433	0.002	94	0%	119	25.2%	4	25%	-	-	-	HMMPfam_DUF1740,superfamily_Prenyl_trans
GPR68	8111	genome.wustl.edu	37	14	91700620	91700620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003485.3	-1	validated	p.D269N	0.004	17	0%	23	21.7%	9	11.1%	benign(0)	tolerated(0.82)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
SMEK1	55671	genome.wustl.edu	37	14	91931760	91931760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032560.4	-1	validated	p.A542V	1.000	105	0%	74	31.1%	25	36%	benign(0.156)	deleterious(0.04)	neutral(0.363)	superfamily_ARM-type_fold
TC2N	123036	genome.wustl.edu	37	14	92249535	92249535	+	Missense_Mutation	SNP	C	C	T	rs144878256	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128595.1	-1	validated	p.S461N	1.000	271	0%	160	26.3%	20	35%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FBLN5	10516	genome.wustl.edu	37	14	92361324	92361324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006329.3	-1	reviewed	p.G158R	1.000	81	0%	63	39.7%	36	36.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
TRIP11	9321	genome.wustl.edu	37	14	92480781	92480781	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004239.3	-1	reviewed	p.L322V	0.969	225	0%	131	10.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92622953	92622953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017437.1	+1	validated	p.T525A	0.000	136	0%	121	44.6%	11	27.2%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92624012	92624012	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017437.1	+1	validated	p.V535	0.999	81	0%	70	47.1%	13	23%	-	-	-	HMMPfam_RMMBL
RIN3	79890	genome.wustl.edu	37	14	93043733	93043733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024832.3	+1	validated	p.S93L	0.000	77	0%	45	35.6%	14	0%	unknown(0)	tolerated(0.57)	-	HMMSmart_SM00252,superfamily_SH2 domain
RIN3	79890	genome.wustl.edu	37	14	93118825	93118825	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024832.3	+1	validated	p.P477	0.001	103	0%	131	39.7%	11	9%	-	-	-	NULL
UNC79	57578	genome.wustl.edu	37	14	94067037	94067037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020818.3	+1	validated	p.F988L	1.000	252	0%	126	33.3%	0	-	possibly_damaging(0.882)	tolerated(0.11)	deleterious(0.616)	NULL
ASB2	51676	genome.wustl.edu	37	14	94405571	94405571	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016150.3	-1	reviewed	p.C452	1.000	7	0.000	13	0.462	9	11.1%	-	-	-	PatternScan_ODR_DC_2_1,superfamily_Ankyrin repeat,PatternScan_C_TYPE_LECTIN_1
DDX24	57062	genome.wustl.edu	37	14	94545740	94545740	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020414.3	-1	reviewed	p.E117*	0.127	334	0%	466	30%	26	7.6%	-	-	-	NULL
PPP4R4	57718	genome.wustl.edu	37	14	94700081	94700081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058237.1	+1	reviewed	p.K203T	1.000	109	0%	76	30.3%	0	-	possibly_damaging(0.61)	deleterious(0.03)	deleterious(0.576)	superfamily_ARM repeat
PPP4R4	57718	genome.wustl.edu	37	14	94703942	94703942	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058237.1	+1	reviewed	p.E258*	1.000	158	0%	136	24.3%	0	-	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
PPP4R4	57718	genome.wustl.edu	37	14	94716580	94716580	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058237.1	+1	reviewed	p.E561	0.997	171	0%	83	18.1%	0	-	-	-	-	superfamily_ARM repeat
PPP4R4	57718	genome.wustl.edu	37	14	94725144	94725144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058237.1	+1	reviewed	p.E679K	1.000	141	0%	113	37.2%	0	-	possibly_damaging(0.649)	tolerated(0.17)	neutral(0.287)	NULL
SERPINA9	327657	genome.wustl.edu	37	14	94935557	94935557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175739.3	-1	validated	p.F225L	1.000	32	0%	22	36.4%	0	-	possibly_damaging(0.496)	tolerated(0.19)	neutral(0.215)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINA4	5267	genome.wustl.edu	37	14	95029937	95029937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006215.2	+1	provisional	p.L40M	0.000	31	0%	19	52.6%	2	100%	benign(0.002)	tolerated(0.25)	neutral(0.037)	superfamily_Prot_inh_serpin
DICER1	23405	genome.wustl.edu	37	14	95572486	95572486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030621.3	-1	reviewed	p.F960C	1.000	150	0%	93	28%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAZ,superfamily_SSF101690
DICER1	23405	genome.wustl.edu	37	14	95577681	95577681	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030621.3	-1	reviewed	p.T743	0.764	234	0%	184	29.9%	14	57.1%	-	-	-	NULL
DICER1	23405	genome.wustl.edu	37	14	95595877	95595877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030621.3	-1	reviewed	p.K222N	1.000	84	0%	82	25.6%	1	100%	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	HMMSmart_DEXDc,superfamily_SSF52540
LOC100287786	100287786	genome.wustl.edu	37	14	95898431	95898431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343255.1	+1	model	p.R65W	0.053	142	0%	164	33.5%	0	-	-	-	-	NULL
C14orf49	161176	genome.wustl.edu	37	14	95898444	95898444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152592.3	-1	validated	p.S900Y	0.999	140	0%	174	25.9%	1	0%	possibly_damaging(0.46)	tolerated(0.06)	deleterious(0.474)	NULL
BDKRB2	624	genome.wustl.edu	37	14	96707757	96707757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000623.3	+1	reviewed	p.E364D	0.033	46	0%	32	37.5%	1	0%	benign(0.004)	tolerated(0.25)	neutral(0.037)	superfamily_Family A G protein-coupled receptor-like
ATG2B	55102	genome.wustl.edu	37	14	96758410	96758410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018036.5	-1	validated	p.P1818S	1.000	227	0%	200	33%	10	20%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
PAPOLA	10914	genome.wustl.edu	37	14	96997831	96997831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032632.3	+1	validated	p.R172I	1.000	386	0%	294	30.6%	100	47%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_NTP_transf_2,HMMPfam_PAP_central,superfamily_Nucleotidyltransferase
C14orf177	283598	genome.wustl.edu	37	14	99182659	99182659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182560.1	+1	provisional	p.S44Y	0.000	46	0%	38	13.2%	0	-	benign(0.201)	-	-	NULL
C14orf177	283598	genome.wustl.edu	37	14	99183496	99183496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182560.1	+1	provisional	p.S88Y	0.000	84	0%	51	17.6%	0	-	benign(0.201)	-	-	NULL
HHIPL1	84439	genome.wustl.edu	37	14	100118834	100118834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127258.1	+1	validated	p.D177N	0.967	37	0%	87	32.2%	2	0%	benign(0.293)	tolerated(0.18)	neutral(0.146)	superfamily_Soluble quinoprotein glucose dehydrogenase
RTL1	388015	genome.wustl.edu	37	14	101347737	101347737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134888.2	-1	reviewed	p.S1130L	0.002	21	0%	43	34.9%	1	0%	benign(0.013)	deleterious(0)	neutral(0.445)	NULL
RTL1	388015	genome.wustl.edu	37	14	101348046	101348046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134888.2	-1	reviewed	p.S1027L	0.000	132	0%	208	36.1%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
RTL1	388015	genome.wustl.edu	37	14	101348878	101348878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134888.2	-1	reviewed	p.R750C	0.887	104	0%	180	12.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_DNA/RNA polymerases
MIR496	574454	genome.wustl.edu	37	14	101526991	101526991	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000385226	+1	known	NULL	0.998	120	0%	170	30.6%	0	-	-	-	-	-
DYNC1H1	1778	genome.wustl.edu	37	14	102442114	102442114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001376.4	+1	reviewed	p.H108N	1.000	87	0%	110	35.5%	12	66.6%	benign(0.013)	tolerated(0.39)	neutral(0.017)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102471488	102471488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001376.4	+1	reviewed	p.S1783I	1.000	32	0%	42	28.6%	50	34%	benign(0.003)	tolerated(0.17)	neutral(0.059)	NULL
MOK	5891	genome.wustl.edu	37	14	102729926	102729926	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014226.1	-1	provisional	p.L80	0.998	187	0%	335	33.4%	9	44.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF839	55778	genome.wustl.edu	37	14	102805447	102805447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018335.3	+1	validated	p.L605R	0.009	113	0%	92	21.7%	13	30.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RCOR1	23186	genome.wustl.edu	37	14	103187380	103187380	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015156.2	+1	validated	p.E361*	1.000	157	0%	106	31.1%	5	0%	-	-	-	NULL
CDC42BPB	9578	genome.wustl.edu	37	14	103442034	103442034	+	Missense_Mutation	SNP	C	C	A	rs113291152		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006035.3	-1	reviewed	p.K498N	1.000	352	0%	589	28.5%	34	44.1%	possibly_damaging(0.936)	deleterious(0.04)	deleterious(0.730)	NULL
BAG5	9529	genome.wustl.edu	37	14	104026748	104026748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001015049.1	-1	reviewed	p.L293V	0.378	165	0%	351	31.6%	22	36.3%	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMPfam_BAG,HMMSmart_SM00264,superfamily_BAG domain
KLC1	3831	genome.wustl.edu	37	14	104153422	104153422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130107.1	+1	reviewed	p.G552D	1.000	124	0%	176	26.1%	46	39.1%	benign(0.341)	tolerated(0.15)	neutral(0.348)	NULL
PPP1R13B	23368	genome.wustl.edu	37	14	104220488	104220488	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015316.2	-1	reviewed	p.E184*	1.000	294	0%	286	23.8%	16	18.7%	-	-	-	NULL
ASPG	374569	genome.wustl.edu	37	14	104561913	104561913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080464.1	+1	provisional	p.D117Y	0.999	61	0%	128	22.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Asparaginase,PatternScan_ASN_GLN_ASE_2,superfamily_Glutaminase/Asparaginase
ASPG	374569	genome.wustl.edu	37	14	104570007	104570007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080464.1	+1	provisional	p.A250T	0.434	21	0%	28	21.4%	0	-	benign(0.004)	tolerated(0.44)	neutral(0.013)	HMMPfam_Asparaginase,superfamily_Glutaminase/Asparaginase
INF2	64423	genome.wustl.edu	37	14	105176013	105176013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022489.3	+1	validated	p.H703Q	0.862	26	0%	56	26.8%	70	31.4%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
AKT1	207	genome.wustl.edu	37	14	105239274	105239274	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001014431.1	-1	reviewed	p.T371	0.871	69	0%	129	31.8%	186	44.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AHNAK2	113146	genome.wustl.edu	37	14	105411846	105411846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138420.2	-1	validated	p.K3314N	0.985	148	0%	214	26.6%	0	-	unknown(0)	tolerated(0.13)	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105411853	105411853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138420.2	-1	validated	p.K3312T	1.000	151	0%	224	31.7%	1	0%	unknown(0)	tolerated(0.1)	-	NULL
C14orf79	122616	genome.wustl.edu	37	14	105453100	105453100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174891.3	+1	validated	p.R111I	0.000	40	0%	87	27.6%	8	75%	probably_damaging(0.981)	tolerated(0.26)	neutral(0.460)	NULL
BRF1	2972	genome.wustl.edu	37	14	105718886	105718886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001519.2	-1	reviewed	p.L168I	1.000	57	0%	128	28.1%	34	29.4%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMSmart_SM00385,superfamily_Cyclin-like
MTA1	9112	genome.wustl.edu	37	14	105929578	105929578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004689.3	+1	reviewed	p.D334N	1.000	24	0%	38	18.4%	124	44.3%	possibly_damaging(0.929)	tolerated(0.08)	deleterious(0.676)	superfamily_Homeodomain-like
IGHG2	3501	genome.wustl.edu	37	14	106109615	106109615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390545	-1	known	p.F302L	0.001	204	0%	363	27.8%	4931	0%	possibly_damaging(0.74)	deleterious(0)	deleterious(0.716)	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHD	3495	genome.wustl.edu	37	14	106306966	106306966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390556	-1	known	p.R288W	0.000	16	0%	28	39.3%	5	0%	benign(0.374)	tolerated(0.2)	neutral(0.168)	superfamily_Immunoglobulin
IGHM	3507	genome.wustl.edu	37	14	106322204	106322204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000496208	-1	known	p.F39L	1.000	104	0%	186	43.5%	76	0%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
IGHV1-2	28474	genome.wustl.edu	37	14	106452853	106452853	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390594	-1	known	p.R57*	0.931	163	0%	88	36.4%	29	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV@	3509	genome.wustl.edu	37	14	106725414	106725414	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390609	-1	known	p.F46	0.412	271	0%	157	16.6%	2032	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV@	3509	genome.wustl.edu	37	14	106725627	106725627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390609	-1	known	p.L10I	0.337	287	0%	207	21.7%	2060	0%	benign(0.388)	tolerated(0.15)	neutral(0.365)	NULL
IGHV3-53	28420	genome.wustl.edu	37	14	107048865	107048865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390627	-1	known	p.Y52C	0.000	225	0%	171	20.5%	80	0%	benign(0.096)	tolerated(0.14)	neutral(0.257)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV1-58	28464	genome.wustl.edu	37	14	107078376	107078376	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390628	-1	known	p.A116	0.787	131	0%	182	29.7%	0	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV3-72	28410	genome.wustl.edu	37	14	107199010	107199010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000433072	-1	known	p.R93S	0.971	190	0%	222	33.8%	17	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
LOC729722	729722	genome.wustl.edu	37	15	20086530	20086530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001716538.2	+1	model	p.T207K	0.088	30	0%	20	40%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ENSG00000215407	0	genome.wustl.edu	37	15	20444697	20444697	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000400226	-1	known	p.I483	0.381	151	0%	133	13.5%	0	-	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
LOC727924	727924	genome.wustl.edu	37	15	22332448	22332448	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_015416.1	+1	predicted	NULL	1.000	632	0%	314	10.2%	0	-	-	-	-	-
OR4M2	390538	genome.wustl.edu	37	15	22368693	22368693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004719.2	+1	validated	p.P40S	0.217	739	0%	371	11.9%	0	-	probably_damaging(0.974)	tolerated(0.12)	deleterious(0.676)	superfamily_Family A G protein-coupled receptor-like
OR4M2	390538	genome.wustl.edu	37	15	22368697	22368697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004719.2	+1	validated	p.G41V	0.385	734	0%	372	12.4%	0	-	benign(0.03)	deleterious(0.01)	neutral(0.407)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4M2	390538	genome.wustl.edu	37	15	22369068	22369068	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004719.2	+1	validated	p.R165*	0.005	727	0%	294	15.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4N4	283694	genome.wustl.edu	37	15	22383237	22383237	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005241.1	+1	provisional	p.I255	0.241	290	0%	282	12.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC642131	642131	genome.wustl.edu	37	15	22472986	22472986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001716834.1	-1	model	p.K102N	0.999	366	0%	474	18.1%	22	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GOLGA6L1	283767	genome.wustl.edu	37	15	22742973	22742973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001413.3	+1	provisional	p.R453Q	0.006	676	0.1%	614	10.1%	0	-	unknown(0)	tolerated(0.42)	-	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22836062	22836062	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102610.1	+1	validated	e3-1	1.000	111	0%	155	23.9%	0	-	-	-	-	-
TUBGCP5	114791	genome.wustl.edu	37	15	22836136	22836136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102610.1	+1	validated	p.L92I	1.000	100	0%	137	26.3%	8	75%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYFIP1	23191	genome.wustl.edu	37	15	22997798	22997798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014608.2	+1	validated	p.S1015Y	1.000	146	0%	162	13%	190	12.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_FragX_IP
NIPA2	81614	genome.wustl.edu	37	15	23014448	23014448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008860.2	-1	reviewed	p.V93M	1.000	71	0%	81	29.6%	46	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE
LOC283683	283683	genome.wustl.edu	37	15	23128244	23128244	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_015696.3	-1	model	NULL	0.014	18	0.000	9	0.444	0	-	-	-	-	-
LOC283685	283685	genome.wustl.edu	37	15	23685249	23685249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343322.1	-1	model	p.E643G	0.001	35	5.7%	53	20.8%	0	-	-	-	-	NULL
LOC283685	283685	genome.wustl.edu	37	15	23685703	23685703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343322.1	-1	model	p.R570W	0.010	68	0%	102	18.6%	0	-	-	-	-	NULL
LOC283685	283685	genome.wustl.edu	37	15	23685935	23685935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343322.1	-1	model	p.E492D	0.000	87	0%	104	22.1%	0	-	-	-	-	NULL
MAGEL2	54551	genome.wustl.edu	37	15	23890347	23890347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019066.4	-1	reviewed	p.S245L	0.000	60	0%	82	29.3%	0	-	benign(0.054)	tolerated(0.31)	neutral(0.030)	NULL
C15orf2	23742	genome.wustl.edu	37	15	24924154	24924154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018958.2	+1	reviewed	p.S1047N	0.003	81	0%	105	25.7%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
UBE3A	7337	genome.wustl.edu	37	15	25616214	25616214	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000462.2	-1	reviewed	p.S372	0.748	86	0%	72	36.1%	21	28.5%	-	-	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	25962069	25962069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024490.3	-1	reviewed	p.E528D	1.000	51	0%	84	23.8%	3	33.3%	possibly_damaging(0.838)	tolerated(0.12)	deleterious(0.581)	superfamily_SSF56784
ATP10A	57194	genome.wustl.edu	37	15	25981250	25981250	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024490.3	-1	reviewed	p.I231	0.960	98	0%	123	32.5%	3	33.3%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
ATP10A	57194	genome.wustl.edu	37	15	26026297	26026297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024490.3	-1	reviewed	p.E175K	1.000	131	0%	221	29%	4	50%	benign(0.356)	deleterious(0)	deleterious(0.557)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
GABRA5	2558	genome.wustl.edu	37	15	27185074	27185074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000810.3	+1	reviewed	p.E243K	0.997	138	0%	162	25.9%	0	-	benign(0.36)	deleterious(0.04)	neutral(0.463)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA5	2558	genome.wustl.edu	37	15	27188440	27188440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000810.3	+1	reviewed	p.A319V	1.000	29	0%	42	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA5	2558	genome.wustl.edu	37	15	27193356	27193356	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000810.3	+1	reviewed	p.I455	0.832	17	0%	13	38.5%	0	-	-	-	-	superfamily_Neu_channel_TM
HERC2	8924	genome.wustl.edu	37	15	28508147	28508147	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004667.4	-1	reviewed	p.S680*	1.000	225	0.4%	251	34.3%	3	33.3%	-	-	-	HMMPfam_RCC1,HMMSmart_SM00706,superfamily_RCC1/BLIP-II
LOC728310	728310	genome.wustl.edu	37	15	29087943	29087943	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_078490.1	-1	model	NULL	0.002	9	0.000	12	0.583	0	-	-	-	-	-
NDNL2	56160	genome.wustl.edu	37	15	29561189	29561189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138704.2	-1	reviewed	p.T241A	0.994	87	0%	143	30.8%	64	42.1%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_MAGE
TJP1	7082	genome.wustl.edu	37	15	30034888	30034888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003257.3	-1	validated	p.V370F	0.981	276	0%	209	25.4%	18	27.7%	benign(0.057)	tolerated(0.2)	neutral(0.053)	NULL
ENSG00000215315	0	genome.wustl.edu	37	15	30337159	30337159	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000400005	+1	known	p.S111	1.000	81	0%	168	29.8%	3	0%	-	-	-	HMMPfam_MARVEL
TRPM1	4308	genome.wustl.edu	37	15	31332467	31332467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002420.4	-1	reviewed	p.E702K	1.000	118	0%	117	31.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRPM1	4308	genome.wustl.edu	37	15	31342667	31342667	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002420.4	-1	reviewed	p.V439G	0.981	396	0%	473	29.6%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
MIR211	406993	genome.wustl.edu	37	15	31357242	31357242	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384969	-1	known	NULL	0.070	120	0%	87	34.5%	0	-	-	-	-	-
FMN1	342184	genome.wustl.edu	37	15	33300232	33300232	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103184.2	-1	validated	p.E513*	1.000	307	0%	169	28.4%	1	0%	-	-	-	NULL
FMN1	342184	genome.wustl.edu	37	15	33359245	33359245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103184.2	-1	validated	p.R281C	1.000	63	0%	48	31.2%	0	-	unknown(0)	deleterious(0)	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33831613	33831613	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.R166*	0.996	116	0%	44	29.5%	0	-	-	-	-	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
RYR3	6263	genome.wustl.edu	37	15	33835881	33835881	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.T235	0.887	160	0%	89	27%	0	-	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR3	6263	genome.wustl.edu	37	15	33922211	33922211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.N917S	1.000	184	0%	97	35.1%	0	-	probably_damaging(0.973)	-	-	HMMPfam_RyR
RYR3	6263	genome.wustl.edu	37	15	33955747	33955747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.L1810F	1.000	70	0%	94	35.1%	0	-	probably_damaging(1)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33990121	33990121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.N2058S	1.000	143	0%	148	35.1%	0	-	benign(0.002)	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	34021182	34021182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.E2386D	1.000	130	0%	86	33.7%	0	-	probably_damaging(0.971)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34049784	34049784	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.E2898*	1.000	165	0%	94	25.5%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34077972	34077972	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.E3126D	1.000	102	0%	49	36.7%	0	-	benign(0.096)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34131007	34131007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.D4276Y	0.994	59	0%	40	27.5%	1	100%	probably_damaging(0.962)	-	-	HMMPfam_RR_TM4-6
RYR3	6263	genome.wustl.edu	37	15	34131115	34131115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.P4312A	0.467	51	0%	37	32.4%	0	-	benign(0.002)	-	-	HMMPfam_RR_TM4-6
RYR3	6263	genome.wustl.edu	37	15	34146642	34146642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.T4618A	1.000	169	0%	211	31.3%	1	0%	possibly_damaging(0.891)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34152815	34152815	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001036.3	+1	validated	p.F4773	1.000	202	0%	359	30.9%	3	33.3%	-	-	-	NULL
AVEN	57099	genome.wustl.edu	37	15	34158895	34158895	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020371.2	-1	validated	p.N336K	0.000	469	0%	274	27.4%	23	39.1%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
PGBD4	161779	genome.wustl.edu	37	15	34395899	34395899	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152595.4	+1	validated	p.D389	0.967	68	0%	106	16%	0	-	-	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34649252	34649252	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175741.1	+1	validated	p.E987*	0.004	36	0%	49	42.9%	0	-	-	-	-	NULL
GJD2	57369	genome.wustl.edu	37	15	35045374	35045374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020660.1	-1	provisional	p.L91I	1.000	55	0%	113	15%	0	-	probably_damaging(0.981)	tolerated(0.74)	neutral(0.427)	HMMPfam_Connexin
GJD2	57369	genome.wustl.edu	37	15	35045563	35045563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020660.1	-1	provisional	p.T28A	1.000	53	0%	77	11.7%	0	-	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	HMMPfam_Connexin
AQR	9716	genome.wustl.edu	37	15	35178825	35178825	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014691.2	-1	validated	p.E907*	1.000	176	0%	124	30.6%	6	0%	-	-	-	superfamily_SSF52540
AQR	9716	genome.wustl.edu	37	15	35252991	35252991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014691.2	-1	validated	p.E53*	1.000	155	0%	137	30.7%	0	-	-	-	-	NULL
ZNF770	54989	genome.wustl.edu	37	15	35274161	35274161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014106.2	-1	validated	p.R492I	1.000	112	0%	121	26.4%	12	50%	probably_damaging(0.972)	deleterious(0.03)	deleterious(0.778)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000248276	0	genome.wustl.edu	37	15	35377228	35377228	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000514460	+1	known	NULL	0.000	115	0%	215	17.2%	0	-	-	-	-	-
C15orf41	84529	genome.wustl.edu	37	15	36872139	36872139	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130010.1	+1	validated	p.R26	1.000	65	0%	71	36.6%	4	50%	-	-	-	NULL
FAM98B	283742	genome.wustl.edu	37	15	38766390	38766390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173611.2	+1	validated	p.L207P	0.416	134	0%	82	23.2%	41	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2465
THBS1	7057	genome.wustl.edu	37	15	39879645	39879645	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003246.2	+1	reviewed	p.C406	0.893	21	0%	38	23.7%	34	2.9%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
EIF2AK4	440275	genome.wustl.edu	37	15	40309413	40309413	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013703.2	+1	validated	p.I1345	1.000	171	0%	78	34.6%	58	31%	-	-	-	superfamily_Class II aaRS and biotin synthetases
EIF2AK4	440275	genome.wustl.edu	37	15	40326622	40326622	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013703.2	+1	validated	p.I1623M	0.992	113	0%	131	35.1%	28	39.2%	possibly_damaging(0.719)	tolerated(0.12)	deleterious(0.521)	NULL
BUB1B	701	genome.wustl.edu	37	15	40500943	40500943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001211.5	+1	reviewed	p.E705D	1.000	84	0%	60	26.7%	27	40.7%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	NULL
C15orf52	388115	genome.wustl.edu	37	15	40630090	40630090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207380.2	-1	validated	p.S217Y	0.016	42	2.4%	57	29.8%	0	-	benign(0.345)	deleterious(0.02)	deleterious(0.492)	NULL
DISP2	85455	genome.wustl.edu	37	15	40657830	40657830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033510.1	+1	reviewed	p.E283D	0.998	85	0%	161	31.1%	0	-	possibly_damaging(0.906)	tolerated(0.58)	neutral(0.364)	NULL
C15orf23	90417	genome.wustl.edu	37	15	40675207	40675207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033286.3	+1	validated	p.E57D	0.012	34	0%	60	28.3%	6	16.6%	benign(0.011)	tolerated(0.54)	neutral(0.008)	NULL
CASC5	57082	genome.wustl.edu	37	15	40913035	40913035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170589.3	+1	validated	p.E217D	0.005	89	0%	50	26%	0	-	benign(0.252)	tolerated(0.51)	neutral(0.035)	NULL
CASC5	57082	genome.wustl.edu	37	15	40914902	40914902	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170589.3	+1	validated	p.E840*	0.005	63	0%	67	44.8%	0	-	-	-	-	NULL
LOC100288995	100288995	genome.wustl.edu	37	15	41222933	41222933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343338.1	-1	model	p.L441I	1.000	46	0%	59	32.2%	0	-	-	-	-	NULL
DLL4	54567	genome.wustl.edu	37	15	41224381	41224381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019074.2	+1	reviewed	p.S224L	1.000	129	0%	238	33.6%	5	0%	benign(0.055)	deleterious(0.01)	neutral(0.409)	HMMSmart_EGF,HMMPfam_EGF_2
INO80	54617	genome.wustl.edu	37	15	41364112	41364112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017553.1	-1	reviewed	p.F514V	1.000	94	0%	60	43.3%	5	60%	benign(0.085)	deleterious(0.02)	neutral(0.389)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
EXD1	161829	genome.wustl.edu	37	15	41482317	41482317	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152596.2	-1	provisional	p.E234*	0.993	104	0%	106	46.2%	0	-	-	-	-	HMMSmart_SM00474,superfamily_Ribonuclease H-like
NUSAP1	51203	genome.wustl.edu	37	15	41657625	41657625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016359.3	+1	validated	p.V229A	0.000	60	0%	50	14%	79	54.4%	benign(0.002)	tolerated(0.44)	neutral(0.013)	NULL
RTF1	23168	genome.wustl.edu	37	15	41763431	41763431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015138.4	+1	validated	p.R363*	1.000	137	0%	116	24.1%	39	7.6%	-	-	-	HMMPfam_Plus-3,HMMSmart_SM00719
LTK	4058	genome.wustl.edu	37	15	41796357	41796357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002344.5	-1	reviewed	p.S811Y	0.010	47	0%	89	34.8%	0	-	possibly_damaging(0.502)	deleterious(0.02)	deleterious(0.550)	NULL
MGA	23269	genome.wustl.edu	37	15	42028472	42028472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080541.2	+1	validated	p.E1337G	1.000	85	0%	57	24.6%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MGA	23269	genome.wustl.edu	37	15	42040997	42040997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080541.2	+1	validated	p.V1841A	0.999	180	0%	81	38.3%	5	20%	benign(0.425)	deleterious(0)	deleterious(0.583)	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42105267	42105267	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128608.1	+1	validated	p.R263*	0.127	192	0%	218	31.7%	8	25%	-	-	-	superfamily_WD40 repeat-like
MAPKBP1	23005	genome.wustl.edu	37	15	42107836	42107836	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128608.1	+1	validated	p.I450	0.780	58	0%	64	31.2%	3	0%	-	-	-	superfamily_WD40 repeat-like
MAPKBP1	23005	genome.wustl.edu	37	15	42109932	42109932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128608.1	+1	validated	p.R641W	1.000	39	0%	50	26%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MAPKBP1	23005	genome.wustl.edu	37	15	42110463	42110463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128608.1	+1	validated	p.F690L	1.000	120	0%	158	33.5%	3	33.3%	benign(0.307)	deleterious(0.01)	deleterious(0.501)	superfamily_WD40 repeat-like
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42135889	42135889	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005090.3	+1	validated	p.A484	0.007	35	0%	44	36.4%	18	38.8%	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
SPTBN5	51332	genome.wustl.edu	37	15	42147781	42147781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016642.2	-1	validated	p.A3027S	0.506	24	0%	68	36.8%	4	25%	possibly_damaging(0.731)	tolerated(0.24)	neutral(0.304)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42179569	42179569	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016642.2	-1	validated	p.V209L	0.272	44	0%	62	35.5%	1	0%	possibly_damaging(0.675)	deleterious(0.05)	deleterious(0.585)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
EHD4	30844	genome.wustl.edu	37	15	42211723	42211723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139265.3	-1	validated	p.F203L	1.000	77	0%	40	27.5%	60	36.6%	possibly_damaging(0.94)	tolerated(0.08)	deleterious(0.685)	HMMPfam_Dynamin_N,superfamily_SSF52540
PLA2G4E	123745	genome.wustl.edu	37	15	42276652	42276652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080490.1	-1	provisional	p.R761*	0.994	102	0%	129	11.6%	0	-	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
GANC	2595	genome.wustl.edu	37	15	42618562	42618562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198141.2	+1	reviewed	p.D454Y	0.997	207	0%	104	35.6%	3	33.3%	benign(0.296)	deleterious(0.02)	deleterious(0.475)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
GANC	2595	genome.wustl.edu	37	15	42622841	42622841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198141.2	+1	reviewed	p.R571H	1.000	185	0%	111	29.7%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
LRRC57	255252	genome.wustl.edu	37	15	42839556	42839556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153260.2	-1	validated	p.H132R	1.000	62	0%	116	24.1%	13	46.1%	possibly_damaging(0.44)	tolerated(0.16)	neutral(0.203)	HMMPfam_LRR_1,superfamily_SSF52058
HAUS2	55142	genome.wustl.edu	37	15	42858946	42858946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018097.2	+1	validated	p.H214Y	0.047	121	0%	86	26.7%	8	12.5%	possibly_damaging(0.736)	tolerated(0.09)	deleterious(0.566)	NULL
STARD9	57519	genome.wustl.edu	37	15	42978841	42978841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001129482.3	+1	model	p.D1603N	0.000	56	0%	31	35.5%	2	0%	benign(0)	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42985120	42985120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001129482.3	+1	model	p.P3696T	0.000	74	0%	49	34.7%	0	-	benign(0.002)	-	-	NULL
CDAN1	146059	genome.wustl.edu	37	15	43016798	43016798	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138477.2	-1	reviewed	p.L1192*	1.000	120	0%	110	29.1%	18	44.4%	-	-	-	NULL
TTBK2	146057	genome.wustl.edu	37	15	43044593	43044593	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173500.3	-1	reviewed	p.E951*	1.000	131	0%	102	34.3%	0	-	-	-	-	NULL
TTBK2	146057	genome.wustl.edu	37	15	43044748	43044748	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173500.3	-1	reviewed	p.F899C	1.000	81	0%	44	27.3%	3	33.3%	possibly_damaging(0.513)	deleterious(0)	deleterious(0.617)	NULL
UBR1	197131	genome.wustl.edu	37	15	43339390	43339390	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174916.2	-1	reviewed	p.L546*	1.000	129	0%	88	47.7%	1	0%	-	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43347065	43347065	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174916.2	-1	reviewed	p.I438	1.000	164	0%	94	29.8%	4	75%	-	-	-	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814086	43814086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002373.5	+1	reviewed	p.V139M	1.000	162	0%	169	23.7%	1	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814496	43814496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002373.5	+1	reviewed	p.K275N	1.000	64	0%	76	39.5%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43816513	43816513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002373.5	+1	reviewed	p.V948I	0.001	101	0%	106	35.8%	1	0%	benign(0.213)	tolerated(0.14)	neutral(0.271)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43818802	43818802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002373.5	+1	reviewed	p.E1711K	0.940	49	0%	68	39.7%	2	0%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43819697	43819697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002373.5	+1	reviewed	p.R2009Q	0.030	27	0%	32	34.4%	2	0%	possibly_damaging(0.935)	tolerated(0.1)	deleterious(0.667)	NULL
MAP1A	4130	genome.wustl.edu	37	15	43820474	43820474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002373.5	+1	reviewed	p.I2268T	0.371	42	0%	66	36.4%	0	-	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
STRC	161497	genome.wustl.edu	37	15	43893654	43893654	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153700.2	-1	reviewed	p.I1547	0.012	99	0%	102	32.4%	1	0%	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43902548	43902548	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153700.2	-1	reviewed	p.R1154*	0.994	386	0%	287	15.7%	0	-	-	-	-	NULL
CATSPER2	117155	genome.wustl.edu	37	15	43939282	43939282	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172095.1	-1	reviewed	p.V118	1.000	188	0%	316	29.1%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
CKMT1A	548596	genome.wustl.edu	37	15	43988294	43988294	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001015001.1	+1	reviewed	p.R242*	1.000	399	0%	523	15.9%	3	0%	-	-	-	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
ELL3	80237	genome.wustl.edu	37	15	44067560	44067560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025165.2	-1	validated	p.N197D	0.997	79	0%	159	32.7%	1	0%	benign(0.139)	deleterious(0.03)	neutral(0.377)	HMMPfam_ELL
FRMD5	84978	genome.wustl.edu	37	15	44175962	44175962	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032892.3	-1	validated	p.G358	1.000	96	0%	57	29.8%	1	0%	-	-	-	NULL
FRMD5	84978	genome.wustl.edu	37	15	44184255	44184255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032892.3	-1	validated	p.N218H	1.000	118	0%	83	9.6%	3	33.3%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMPfam_FERM_C,superfamily_PH domain-like
CASC4	113201	genome.wustl.edu	37	15	44695092	44695092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138423.2	+1	reviewed	p.F360L	1.000	129	0%	118	30.5%	20	30%	probably_damaging(0.987)	tolerated(0.3)	neutral(0.465)	NULL
EIF3J	8669	genome.wustl.edu	37	15	44849770	44849770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003758.2	+1	validated	p.D165Y	1.000	120	0%	91	36.3%	18	38.8%	possibly_damaging(0.453)	deleterious(0.02)	deleterious(0.531)	HMMPfam_eIF3_subunit
SPG11	80208	genome.wustl.edu	37	15	44920905	44920905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025137.3	-1	reviewed	p.V677L	0.838	299	0%	195	26.2%	8	25%	benign(0.146)	tolerated(0.55)	neutral(0.019)	NULL
SORD	6652	genome.wustl.edu	37	15	45353314	45353314	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003104.4	+1	validated	p.F105	0.998	161	0%	93	37.6%	91	38.4%	-	-	-	superfamily_GroES-like,HMMPfam_ADH_N
DUOX2	50506	genome.wustl.edu	37	15	45389449	45389449	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014080.4	-1	reviewed	p.E1278	1.000	94	0%	85	31.8%	0	-	-	-	-	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
DUOXA2	405753	genome.wustl.edu	37	15	45408792	45408792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207581.3	+1	reviewed	p.A140V	0.000	38	0%	48	33.3%	0	-	benign(0.018)	tolerated(0.24)	neutral(0.038)	HMMPfam_DuoxA
GATM	2628	genome.wustl.edu	37	15	45661653	45661653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001482.2	-1	reviewed	p.H119N	1.000	248	0%	224	27.2%	6	33.3%	probably_damaging(0.997)	tolerated(0.17)	deleterious(0.525)	HMMPfam_Amidinotransf,superfamily_Pentein
HMGN2P46	283651	genome.wustl.edu	37	15	45847750	45847750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000313559	+1	known	p.E34*	0.000	50	0%	40	25%	0	-	-	-	-	NULL
SQRDL	58472	genome.wustl.edu	37	15	45965990	45965990	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021199.2	+1	provisional	p.Y215*	0.998	90	0%	58	36.2%	26	0%	-	-	-	HMMPfam_Pyr_redox_2,superfamily_SSF51905
SEMA6D	80031	genome.wustl.edu	37	15	48053203	48053203	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153618.1	+1	reviewed	p.E84*	1.000	134	0%	52	28.8%	1	0%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6D	80031	genome.wustl.edu	37	15	48056195	48056195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153618.1	+1	reviewed	p.S299F	1.000	194	0%	81	25.9%	2	100%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6D	80031	genome.wustl.edu	37	15	48063853	48063853	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153618.1	+1	reviewed	p.Y1031	0.991	45	0%	25	24%	2	0%	-	-	-	NULL
CTXN2	399697	genome.wustl.edu	37	15	48493701	48493701	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145668.1	+1	validated	p.V68	0.790	250	0%	167	15%	1	0%	-	-	-	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48518684	48518684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000338.2	+1	reviewed	p.L214F	1.000	163	0%	108	13%	4	25%	benign(0.157)	deleterious(0.01)	neutral(0.420)	HMMPfam_AA_permease
SLC12A1	6557	genome.wustl.edu	37	15	48580308	48580308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000338.2	+1	reviewed	p.T900P	0.003	141	0%	74	32.4%	5	20%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48593571	48593571	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000338.2	+1	reviewed	p.L1052	1.000	112	0%	128	28.1%	11	63.6%	-	-	-	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48595010	48595010	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000338.2	+1	reviewed	p.I1076	0.997	188	0%	317	31.2%	5	60%	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48726861	48726861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000138.4	-1	reviewed	p.K2182N	1.000	118	0%	49	34.7%	6	33.3%	benign(0.174)	tolerated(0.19)	neutral(0.066)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48779290	48779290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000138.4	-1	reviewed	p.D1191N	0.992	34	2.9%	37	24.3%	12	33.3%	possibly_damaging(0.825)	tolerated(0.54)	neutral(0.320)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
FBN1	2200	genome.wustl.edu	37	15	48780424	48780424	+	Missense_Mutation	SNP	G	G	A	rs186805359	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000138.4	-1	reviewed	p.R1075C	1.000	83	0%	64	20.3%	8	12.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CEP152	22995	genome.wustl.edu	37	15	49031003	49031003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014985.2	-1	provisional	p.D1470N	0.000	85	0%	43	25.6%	3	33.3%	benign(0.026)	tolerated(0.65)	neutral(0.004)	NULL
CEP152	22995	genome.wustl.edu	37	15	49036533	49036533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014985.2	-1	provisional	p.S1191P	0.998	91	0%	82	22%	5	20%	probably_damaging(0.989)	tolerated(0.22)	deleterious(0.481)	NULL
CEP152	22995	genome.wustl.edu	37	15	49048288	49048288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014985.2	-1	provisional	p.L1053I	0.165	179	0%	90	32.2%	3	33.3%	probably_damaging(0.971)	tolerated(0.4)	neutral(0.429)	NULL
SECISBP2L	9728	genome.wustl.edu	37	15	49309757	49309757	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014701.2	-1	provisional	p.L368	1.000	205	0%	76	42.1%	1	0%	-	-	-	NULL
C15orf33	196951	genome.wustl.edu	37	15	49867222	49867222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152647.2	-1	validated	p.L211I	1.000	84	0%	61	34.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ATP8B4	79895	genome.wustl.edu	37	15	50303067	50303067	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024837.2	-1	validated	p.K137T	1.000	332	0%	79	26.6%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF81665
HDC	3067	genome.wustl.edu	37	15	50544635	50544635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002112.2	-1	validated	p.D345N	1.000	74	0%	47	38.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pyridoxal_deC,superfamily_PyrdxlP-dep_Trfase_major
USP8	9101	genome.wustl.edu	37	15	50773789	50773789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128610.1	+1	validated	p.R444C	1.000	155	0%	93	29%	12	41.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRPM7	54822	genome.wustl.edu	37	15	50867185	50867185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017672.4	-1	reviewed	p.K1628T	1.000	203	0%	154	31.2%	20	25%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like
TRPM7	54822	genome.wustl.edu	37	15	50886632	50886632	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017672.4	-1	reviewed	p.G1157*	1.000	141	0%	91	30.8%	7	28.5%	-	-	-	NULL
TRPM7	54822	genome.wustl.edu	37	15	50916403	50916403	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017672.4	-1	reviewed	p.K467T	1.000	158	0%	143	26.6%	6	83.3%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
AP4E1	23431	genome.wustl.edu	37	15	51223083	51223083	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007347.3	+1	validated	p.E262*	1.000	123	0%	58	34.5%	1	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
AP4E1	23431	genome.wustl.edu	37	15	51250835	51250835	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007347.3	+1	validated	p.A565	0.975	118	0%	54	38.9%	2	0%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
CYP19A1	1588	genome.wustl.edu	37	15	51510773	51510773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000103.3	-1	reviewed	p.K236N	1.000	164	0%	94	13.8%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP19A1	1588	genome.wustl.edu	37	15	51510842	51510842	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000103.3	-1	reviewed	p.I213	0.177	104	0%	59	44.1%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
DMXL2	23312	genome.wustl.edu	37	15	51742382	51742382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015263.3	-1	validated	p.A2949T	1.000	158	0%	94	22.3%	31	41.9%	benign(0.017)	tolerated(0.09)	neutral(0.297)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DMXL2	23312	genome.wustl.edu	37	15	51772896	51772896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015263.3	-1	validated	p.A2136V	1.000	136	0%	142	9.9%	6	16.6%	unknown(0)	deleterious(0.01)	-	superfamily_WD40 repeat-like
SCG3	29106	genome.wustl.edu	37	15	51975299	51975299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013243.3	+1	reviewed	p.K53N	1.000	115	0%	125	12.8%	0	-	benign(0.053)	tolerated(0.1)	neutral(0.290)	NULL
SCG3	29106	genome.wustl.edu	37	15	51980463	51980463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013243.3	+1	reviewed	p.P135L	1.000	120	0%	59	23.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SCG3	29106	genome.wustl.edu	37	15	51980575	51980575	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013243.3	+1	reviewed	p.V172	1.000	123	0%	56	28.6%	0	-	-	-	-	NULL
MYO5A	4644	genome.wustl.edu	37	15	52643532	52643532	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000259.3	-1	reviewed	p.S1256	0.844	113	0%	82	26.8%	5	40%	-	-	-	NULL
WDR72	256764	genome.wustl.edu	37	15	53889440	53889440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182758.2	-1	validated	p.A995V	0.974	178	0%	77	24.7%	77	42.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54305295	54305295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080534.1	+1	provisional	p.K65N	0.998	122	0%	74	18.9%	0	-	benign(0.052)	deleterious(0)	neutral(0.448)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54308000	54308000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080534.1	+1	provisional	p.R967I	0.998	117	0%	62	25.8%	0	-	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54586116	54586116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080534.1	+1	provisional	p.R1281Q	1.000	187	0%	152	33.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
UNC13C	440279	genome.wustl.edu	37	15	54916148	54916148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080534.1	+1	provisional	p.Q2119K	1.000	113	0.9%	54	25.9%	1	100%	benign(0.238)	deleterious(0.04)	neutral(0.373)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
RSL24D1	51187	genome.wustl.edu	37	15	55477572	55477572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016304.2	-1	reviewed	p.F107C	1.000	212	0%	97	40.2%	69	55%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
PIGB	9488	genome.wustl.edu	37	15	55612484	55612484	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004855.4	+1	reviewed	p.E59*	0.999	394	0%	339	11.2%	3	0%	-	-	-	NULL
CCPG1	9236	genome.wustl.edu	37	15	55652505	55652505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004748.3	-1	validated	p.V489A	1.000	242	0%	217	30.4%	8	12.5%	probably_damaging(0.999)	tolerated(0.51)	deleterious(0.499)	NULL
CCPG1	9236	genome.wustl.edu	37	15	55652868	55652868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004748.3	-1	validated	p.F368S	1.000	290	0%	228	37.7%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCPG1	9236	genome.wustl.edu	37	15	55657460	55657460	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004748.3	-1	validated	p.E252*	1.000	96	0%	44	29.5%	14	7.1%	-	-	-	NULL
PYGO1	26108	genome.wustl.edu	37	15	55838259	55838259	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015617.1	-1	provisional	p.E408*	1.000	73	0%	58	31%	9	55.5%	-	-	-	NULL
PYGO1	26108	genome.wustl.edu	37	15	55838828	55838828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015617.1	-1	provisional	p.S218Y	0.961	123	0%	68	26.5%	0	-	benign(0.174)	tolerated(0.07)	neutral(0.335)	NULL
PRTG	283659	genome.wustl.edu	37	15	55916659	55916659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173814.4	-1	validated	p.P992T	0.002	137	0%	105	39%	0	-	benign(0.036)	tolerated(0.25)	neutral(0.039)	NULL
PRTG	283659	genome.wustl.edu	37	15	55964707	55964707	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173814.4	-1	validated	p.G659	0.999	93	0%	99	38.4%	1	100%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NEDD4	4734	genome.wustl.edu	37	15	56122766	56122766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198400.2	-1	validated	p.S1196*	0.995	121	0%	83	37.3%	0	-	-	-	-	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
NEDD4	4734	genome.wustl.edu	37	15	56130769	56130769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198400.2	-1	validated	p.L1036I	1.000	166	0%	97	26.8%	1	0%	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
NEDD4	4734	genome.wustl.edu	37	15	56207807	56207807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198400.2	-1	validated	p.S408Y	0.342	76	0%	46	30.4%	0	-	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
RFX7	64864	genome.wustl.edu	37	15	56387470	56387470	+	Missense_Mutation	SNP	G	G	T	rs190494413	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022841.5	-1	validated	p.S819Y	0.071	126	0%	84	26.2%	4	25%	possibly_damaging(0.716)	deleterious(0.02)	deleterious(0.642)	NULL
RFX7	64864	genome.wustl.edu	37	15	56394390	56394390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022841.5	-1	validated	p.D194Y	1.000	208	0%	212	28.8%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MNS1	55329	genome.wustl.edu	37	15	56739142	56739142	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018365.2	-1	reviewed	e4-1	1.000	136	0%	64	15.6%	0	-	-	-	-	-
ZNF280D	54816	genome.wustl.edu	37	15	56961093	56961093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017661.2	-1	validated	p.M491I	1.000	336	0%	74	27%	8	37.5%	benign(0.001)	tolerated(0.94)	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF280D	54816	genome.wustl.edu	37	15	56996375	56996375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017661.2	-1	validated	p.D40G	1.000	342	0%	216	27.8%	32	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TCF12	6938	genome.wustl.edu	37	15	57511760	57511760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207040.1	+1	reviewed	p.S14Y	1.000	213	0%	127	31.5%	14	64.2%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
GCOM1	145781	genome.wustl.edu	37	15	57896543	57896543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001018090.1	+1	reviewed	p.R51I	0.999	69	0%	64	29.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GCOM1	145781	genome.wustl.edu	37	15	57925929	57925929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001018090.1	+1	reviewed	p.R308H	1.000	84	0%	77	33.8%	0	-	probably_damaging(1)	tolerated(0.53)	deleterious(0.507)	NULL
LIPC	3990	genome.wustl.edu	37	15	58855768	58855768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000236.2	+1	reviewed	p.E412K	1.000	76	0%	52	25%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
HSP90AB4P	664618	genome.wustl.edu	37	15	58984608	58984608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000380522	-1	known	p.K239N	1.000	28	0%	41	29.3%	0	-	-	-	-	HMMPfam_HSP90
SLTM	79811	genome.wustl.edu	37	15	59185179	59185179	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024755.2	-1	validated	p.L605	1.000	305	0.3%	171	31.6%	35	34.2%	-	-	-	NULL
RNF111	54778	genome.wustl.edu	37	15	59323676	59323676	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017610.6	+1	reviewed	p.N219H	0.760	87	0%	56	35.7%	3	100%	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
RNF111	54778	genome.wustl.edu	37	15	59377946	59377946	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017610.6	+1	reviewed	p.R838*	1.000	182	0%	79	38%	18	11.1%	-	-	-	NULL
MYO1E	4643	genome.wustl.edu	37	15	59466008	59466008	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004998.2	-1	validated	p.F757	0.981	178	0%	145	32.4%	27	48.1%	-	-	-	HMMPfam_Myosin_TH1
MYO1E	4643	genome.wustl.edu	37	15	59501033	59501033	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004998.2	-1	validated	p.I459	1.000	91	0%	110	33.6%	17	35.2%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NARG2	79664	genome.wustl.edu	37	15	60741792	60741792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024611.4	-1	validated	p.Q458H	1.000	139	0%	106	28.3%	9	66.6%	possibly_damaging(0.685)	deleterious(0)	deleterious(0.689)	NULL
RORA	6095	genome.wustl.edu	37	15	60907193	60907193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002943.3	-1	reviewed	p.F57L	0.001	48	0%	19	42.1%	0	-	benign(0)	tolerated(1)	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62204064	62204064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020821.1	-1	validated	p.K2897T	1.000	120	0%	59	33.9%	9	66.6%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_DUF1162
VPS13C	54832	genome.wustl.edu	37	15	62209737	62209737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020821.1	-1	validated	p.E2620K	0.998	82	0%	87	24.1%	6	50%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	NULL
VPS13C	54832	genome.wustl.edu	37	15	62242598	62242598	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020821.1	-1	validated	p.E1519*	1.000	138	0%	74	27%	3	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62274682	62274682	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020821.1	-1	validated	p.E669*	1.000	386	0%	248	31.5%	1	0%	-	-	-	NULL
LOC100289289	100289289	genome.wustl.edu	37	15	62542644	62542644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343368.1	-1	model	p.P871H	0.006	14	0.000	9	0.556	0	-	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	63045974	63045974	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015059.2	+1	reviewed	p.A1445	0.995	87	0%	65	16.9%	14	64.2%	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	63084959	63084959	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015059.2	+1	reviewed	p.I1952	0.940	21	0%	28	32.1%	30	46.6%	-	-	-	HMMPfam_VBS
TLN2	83660	genome.wustl.edu	37	15	63089455	63089455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015059.2	+1	reviewed	p.D2030Y	1.000	29	0%	40	27.5%	33	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VBS
ENSG00000247530	0	genome.wustl.edu	37	15	63880812	63880812	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000499437	-1	known	NULL	0.001	68	0%	37	29.7%	1	0%	-	-	-	-
HERC1	8925	genome.wustl.edu	37	15	64019920	64019920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003922.3	-1	reviewed	p.P1091H	1.000	65	0%	32	46.9%	2	100%	benign(0.195)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	64021813	64021813	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003922.3	-1	reviewed	p.D968	1.000	104	0%	63	38.1%	2	50%	-	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	64056375	64056375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003922.3	-1	reviewed	p.R316W	1.000	58	0%	39	38.5%	1	100%	probably_damaging(0.999)	-	-	NULL
DAPK2	23604	genome.wustl.edu	37	15	64218250	64218250	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014326.3	-1	reviewed	p.E234	0.967	104	0%	88	36.4%	5	20%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PPIB	5479	genome.wustl.edu	37	15	64448304	64448304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000942.4	-1	reviewed	p.R190Q	1.000	97	0%	173	30.6%	2687	37%	probably_damaging(0.994)	tolerated(0.35)	deleterious(0.473)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
KIAA0101	9768	genome.wustl.edu	37	15	64668945	64668945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014736.4	-1	validated	p.R96I	1.000	90	0%	102	10.8%	40	30%	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	NULL
TRIP4	9325	genome.wustl.edu	37	15	64686159	64686159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016213.3	+1	validated	p.I39T	1.000	120	0%	145	37.2%	22	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OAZ2	4947	genome.wustl.edu	37	15	64982680	64982680	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002537.2	-1	reviewed	p.Q82	1.000	138	0%	155	32.3%	179	49.7%	-	-	-	HMMPfam_ODC_AZ
CILP	8483	genome.wustl.edu	37	15	65490276	65490276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003613.3	-1	reviewed	p.R783I	0.221	70	0%	68	26.5%	0	-	benign(0.055)	tolerated(0.16)	neutral(0.063)	NULL
PARP16	54956	genome.wustl.edu	37	15	65551875	65551875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017851.4	-1	provisional	p.S281L	0.992	67	0%	58	34.5%	21	52.3%	possibly_damaging(0.701)	deleterious(0.05)	deleterious(0.597)	NULL
IGDCC4	57722	genome.wustl.edu	37	15	65684251	65684251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020962.1	-1	provisional	p.W731R	1.000	96	0%	159	35.8%	1	0%	benign(0.156)	tolerated(0.62)	neutral(0.018)	superfamily_Fibronectin type III
DPP8	54878	genome.wustl.edu	37	15	65780127	65780127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_197960.2	-1	reviewed	p.L302I	0.955	100	0%	69	33.3%	4	50%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
C15orf44	81556	genome.wustl.edu	37	15	65891230	65891230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030800.1	-1	predicted	p.K195N	1.000	82	0%	77	27.3%	34	52.9%	possibly_damaging(0.935)	tolerated(0.2)	neutral(0.429)	superfamily_vWA-like
DENND4A	10260	genome.wustl.edu	37	15	65988761	65988761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144823.1	-1	validated	p.V1008I	1.000	192	0%	104	35.6%	7	28.5%	possibly_damaging(0.889)	deleterious(0.04)	deleterious(0.698)	NULL
DENND4A	10260	genome.wustl.edu	37	15	66007871	66007871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144823.1	-1	validated	p.S633Y	1.000	152	0%	77	39%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66587470	66587470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133375.3	+1	validated	p.R12K	0.980	148	0%	306	25.5%	13	30.7%	benign(0.001)	tolerated(1)	-	NULL
DIS3L	115752	genome.wustl.edu	37	15	66618457	66618457	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133375.3	+1	validated	p.E569D	0.877	67	0%	48	43.8%	59	38.9%	benign(0.248)	tolerated(0.48)	neutral(0.036)	HMMPfam_RNB
TIPIN	54962	genome.wustl.edu	37	15	66633536	66633536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017858.2	-1	validated	p.E212K	1.000	136	0%	104	37.5%	10	60%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
SNAPC5	10302	genome.wustl.edu	37	15	66787731	66787731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006049.2	-1	validated	p.M39I	1.000	141	0%	205	11.2%	33	6%	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
ZWILCH	55055	genome.wustl.edu	37	15	66812982	66812982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017975.3	+1	validated	p.R192I	1.000	122	0%	69	20.3%	17	58.8%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_DUF2352
IQCH	64799	genome.wustl.edu	37	15	67553639	67553639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031715.2	+1	validated	p.E27D	0.411	107	0%	154	28.6%	1	100%	possibly_damaging(0.942)	tolerated(0.09)	deleterious(0.683)	NULL
SKOR1	390598	genome.wustl.edu	37	15	68118703	68118703	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031807.1	+1	provisional	p.F170	1.000	56	0%	75	34.7%	5	40%	-	-	-	superfamily_SAND_like
PIAS1	8554	genome.wustl.edu	37	15	68466220	68466220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016166.1	+1	reviewed	p.I387V	1.000	188	0%	79	27.8%	11	27.2%	benign(0.001)	tolerated(0.49)	neutral(0.011)	superfamily_RING/U-box
SPESP1	246777	genome.wustl.edu	37	15	69238761	69238761	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145658.3	+1	reviewed	p.I296	0.000	40	0%	27	37%	1	100%	-	-	-	NULL
GLCE	26035	genome.wustl.edu	37	15	69548483	69548483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015554.1	+1	validated	p.D113A	1.000	229	0%	132	32.6%	4	75%	benign(0.117)	tolerated(0.14)	neutral(0.259)	NULL
UACA	55075	genome.wustl.edu	37	15	70976690	70976690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018003.2	-1	validated	p.G233D	1.000	141	0%	35	40%	11	36.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ANK
THSD4	79875	genome.wustl.edu	37	15	71433881	71433881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024817.2	+1	provisional	p.F5L	0.002	98	0%	44	38.6%	0	-	benign(0.043)	-	-	NULL
MYO9A	4649	genome.wustl.edu	37	15	72192168	72192168	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006901.2	-1	validated	p.D1110E	0.000	94	0%	41	36.6%	1	100%	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO9A	4649	genome.wustl.edu	37	15	72338405	72338405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006901.2	-1	validated	p.R167Q	1.000	97	0%	65	35.4%	1	0%	probably_damaging(0.985)	tolerated(0.33)	neutral(0.456)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO9A	4649	genome.wustl.edu	37	15	72338902	72338902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006901.2	-1	validated	p.M1I	1.000	119	0%	102	26.5%	3	33.3%	possibly_damaging(0.866)	deleterious(0)	deleterious(0.780)	NULL
GRAMD2	196996	genome.wustl.edu	37	15	72455726	72455726	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012642.2	-1	validated	p.P279	0.000	122	0%	73	31.5%	0	-	-	-	-	NULL
TMEM202	338949	genome.wustl.edu	37	15	72691082	72691082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080462.1	+1	provisional	p.R57Q	0.930	66	0%	124	69.4%	0	-	probably_damaging(0.958)	tolerated(0.21)	neutral(0.446)	NULL
ARIH1	25820	genome.wustl.edu	37	15	72847676	72847676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005744.3	+1	validated	p.T218I	1.000	277	0%	154	31.8%	18	66.6%	benign(0.37)	tolerated(0.16)	neutral(0.177)	HMMSmart_SM00184,superfamily_RING/U-box
ARIH1	25820	genome.wustl.edu	37	15	72864486	72864486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005744.3	+1	validated	p.A399S	1.000	107	0%	145	26.9%	62	43.5%	benign(0.009)	tolerated(0.57)	neutral(0.007)	NULL
NEO1	4756	genome.wustl.edu	37	15	73562744	73562744	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002499.3	+1	validated	p.R936*	1.000	126	0%	85	40%	36	8.3%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
NEO1	4756	genome.wustl.edu	37	15	73590734	73590734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002499.3	+1	validated	p.S1316L	1.000	116	0%	82	35.4%	66	84.8%	benign(0.291)	tolerated(0.22)	neutral(0.132)	HMMPfam_Neogenin_C
HCN4	10021	genome.wustl.edu	37	15	73615823	73615823	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005477.2	-1	reviewed	p.L871	0.991	29	0%	51	35.3%	1	100%	-	-	-	NULL
HCN4	10021	genome.wustl.edu	37	15	73617684	73617684	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005477.2	-1	reviewed	p.F564	0.962	84	0%	143	40.6%	0	-	-	-	-	superfamily_cNMP_binding
HCN4	10021	genome.wustl.edu	37	15	73624615	73624615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005477.2	-1	reviewed	p.D410Y	1.000	66	0%	80	27.5%	1	100%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_Ion_trans,superfamily_SSF81324
TBC1D21	161514	genome.wustl.edu	37	15	74177161	74177161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153356.1	+1	provisional	p.G136D	1.000	46	0%	42	31%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_TBC,superfamily_RabGAP_TBC
ISLR2	57611	genome.wustl.edu	37	15	74425596	74425596	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130136.1	+1	validated	p.F167	1.000	24	0%	53	41.5%	4	75%	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
CYP11A1	1583	genome.wustl.edu	37	15	74631939	74631939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000781.2	-1	reviewed	p.K382N	1.000	219	0%	200	29%	14	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
CLK3	1198	genome.wustl.edu	37	15	74917251	74917251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130028.1	+1	reviewed	p.S329Y	0.996	60	0%	79	34.2%	66	39.3%	possibly_damaging(0.828)	deleterious(0.01)	deleterious(0.720)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
ENSG00000233166	0	genome.wustl.edu	37	15	75595013	75595013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000454231	-1	known	p.S3L	0.469	10	0%	10	40%	0	-	-	-	-	NULL
LOC646791	646791	genome.wustl.edu	37	15	75614196	75614196	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_017650.3	-1	model	NULL	0.926	261	0%	427	27.4%	0	-	-	-	-	-
SIN3A	25942	genome.wustl.edu	37	15	75687184	75687184	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145357.1	-1	reviewed	p.E705A	1.000	156	0%	65	20%	25	56%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SNX33	257364	genome.wustl.edu	37	15	75942680	75942680	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153271.1	+1	provisional	p.E413*	1.000	78	0%	155	37.4%	10	0%	-	-	-	HMMPfam_BAR_3_WASP_bdg
CSPG4	1464	genome.wustl.edu	37	15	75981848	75981848	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001897.4	-1	reviewed	p.L520	0.933	11	0%	22	27.3%	2	0%	-	-	-	NULL
ENSG00000187812	0	genome.wustl.edu	37	15	76069698	76069698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000395215	+1	known	p.E31*	1.000	53	0%	38	23.7%	0	-	-	-	-	NULL
ENSG00000187812	0	genome.wustl.edu	37	15	76074721	76074721	+	Missense_Mutation	SNP	C	C	T	rs192258934	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000395215	+1	known	p.S251L	0.087	56	0%	72	36.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FBXO22	26263	genome.wustl.edu	37	15	76225317	76225317	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_147188.1	+1	reviewed	p.E362D	0.996	330	0%	179	30.2%	32	43.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FIST_C
SCAPER	49855	genome.wustl.edu	37	15	76995327	76995327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020843.2	-1	validated	p.R754Q	1.000	66	0%	52	38.5%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77021036	77021036	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020843.2	-1	validated	p.E688*	1.000	350	0%	138	31.2%	4	0%	-	-	-	NULL
SCAPER	49855	genome.wustl.edu	37	15	77064151	77064151	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020843.2	-1	validated	p.N393H	0.000	237	0%	89	36%	1	0%	benign(0.114)	tolerated(0.14)	neutral(0.259)	NULL
SCAPER	49855	genome.wustl.edu	37	15	77064234	77064234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020843.2	-1	validated	p.R365Q	0.000	167	0%	63	34.9%	1	0%	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
TSPAN3	10099	genome.wustl.edu	37	15	77345214	77345214	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005724.5	-1	reviewed	p.E164*	1.000	112	0%	66	28.8%	208	2.4%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
SGK269	79834	genome.wustl.edu	37	15	77473846	77473846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024776.2	-1	validated	p.K141N	0.328	219	0%	122	24.6%	6	50%	benign(0.012)	tolerated(0.08)	neutral(0.300)	NULL
HMG20A	10363	genome.wustl.edu	37	15	77759563	77759563	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018200.2	+1	provisional	p.R122*	1.000	84	0%	58	43.1%	11	18.1%	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
ACSBG1	23205	genome.wustl.edu	37	15	78500375	78500375	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015162.3	-1	reviewed	p.E67	0.069	97	0%	88	29.5%	0	-	-	-	-	NULL
CRABP1	1381	genome.wustl.edu	37	15	78633555	78633555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004378.2	+1	reviewed	p.K81E	1.000	32	0%	68	20.6%	164	56.7%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Lipocalin,superfamily_Lipocalins
IREB2	3658	genome.wustl.edu	37	15	78770658	78770658	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004136.2	+1	validated	p.L405	0.012	153	0%	256	32.4%	18	66.6%	-	-	-	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
IREB2	3658	genome.wustl.edu	37	15	78770659	78770659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004136.2	+1	validated	p.E406K	0.006	150	0%	259	34.7%	18	27.7%	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
IREB2	3658	genome.wustl.edu	37	15	78781107	78781107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004136.2	+1	validated	p.K690N	0.971	99	0%	82	37.8%	14	35.7%	possibly_damaging(0.478)	tolerated(0.62)	neutral(0.162)	superfamily_Aconitase iron-sulfur domain
AGPHD1	123688	genome.wustl.edu	37	15	78825726	78825726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013619.2	+1	validated	p.S279N	0.000	180	0%	203	27.6%	3	33.3%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMPfam_APH
CHRNA5	1138	genome.wustl.edu	37	15	78880692	78880692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000745.2	+1	provisional	p.D114Y	1.000	177	0%	100	23%	2	50%	possibly_damaging(0.625)	deleterious(0)	deleterious(0.662)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CHRNB4	1143	genome.wustl.edu	37	15	78921776	78921776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000750.3	-1	validated	p.D291N	0.797	131	0%	177	28.2%	0	-	benign(0.047)	tolerated(0.09)	neutral(0.299)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ANKRD34C	390616	genome.wustl.edu	37	15	79585947	79585947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343327.1	+1	model	p.E107D	0.963	41	0%	28	46.4%	0	-	benign(0.004)	tolerated(0.69)	neutral(0.002)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD34C	390616	genome.wustl.edu	37	15	79586122	79586122	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343327.1	+1	model	p.Q166*	1.000	53	0%	49	30.6%	0	-	-	-	-	NULL
LOC647020	647020	genome.wustl.edu	37	15	81410291	81410291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001719614.2	-1	model	p.D169Y	1.000	98	0%	192	26%	0	-	-	-	-	superfamily_L domain-like
LOC647020	647020	genome.wustl.edu	37	15	81410432	81410432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001719614.2	-1	model	p.D122Y	1.000	72	0%	107	29%	0	-	-	-	-	superfamily_L domain-like
C15orf26	161502	genome.wustl.edu	37	15	81427651	81427651	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173528.2	+1	predicted	p.K37T	0.009	95	0%	161	26.7%	0	-	benign(0.27)	deleterious(0.01)	neutral(0.435)	NULL
IL16	3603	genome.wustl.edu	37	15	81561934	81561934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172217.3	+1	reviewed	p.G207V	0.966	64	0%	39	30.8%	0	-	possibly_damaging(0.647)	deleterious(0.02)	deleterious(0.610)	superfamily_PDZ domain-like
STARD5	80765	genome.wustl.edu	37	15	81610812	81610812	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181900.2	-1	validated	p.P144	0.864	53	0%	74	39.2%	14	21.4%	-	-	-	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
TMC3	342125	genome.wustl.edu	37	15	81625359	81625359	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080532.1	-1	provisional	p.N902H	0.000	69	0%	76	28.9%	0	-	possibly_damaging(0.476)	deleterious(0.03)	deleterious(0.521)	NULL
TMC3	342125	genome.wustl.edu	37	15	81637234	81637234	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080532.1	-1	provisional	p.R464I	0.082	255	0%	142	31%	0	-	possibly_damaging(0.929)	tolerated(0.16)	neutral(0.435)	NULL
TMC3	342125	genome.wustl.edu	37	15	81666342	81666342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080532.1	-1	provisional	p.S26Y	1.000	104	0%	36	52.8%	0	-	possibly_damaging(0.931)	deleterious(0.03)	deleterious(0.742)	NULL
EFTUD1	79631	genome.wustl.edu	37	15	82431176	82431176	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024580.5	-1	validated	p.V999	1.000	67	0%	30	46.7%	49	61.2%	-	-	-	HMMPfam_EFG_C,superfamily_EF-G C-terminal domain-like
EFTUD1	79631	genome.wustl.edu	37	15	82444715	82444715	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024580.5	-1	validated	p.E694*	1.000	109	0%	45	37.8%	8	12.5%	-	-	-	superfamily_Ribosomal protein S5 domain 2-like
CPEB1	64506	genome.wustl.edu	37	15	83226577	83226577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030594.3	-1	reviewed	p.S180Y	1.000	148	0%	108	11.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83345366	83345366	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004644.3	-1	validated	p.I504	1.000	78	0%	124	40.3%	1	100%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
WHAMM	123720	genome.wustl.edu	37	15	83499656	83499656	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080435.1	+1	provisional	p.P649	0.000	28	0%	30	26.7%	5	80%	-	-	-	NULL
BTBD1	53339	genome.wustl.edu	37	15	83725293	83725293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025238.3	-1	reviewed	p.L136I	1.000	128	0%	121	33.9%	28	50%	probably_damaging(0.992)	tolerated(0.28)	deleterious(0.479)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
BNC1	646	genome.wustl.edu	37	15	83926261	83926261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001717.3	-1	reviewed	p.R973Q	0.997	109	0%	82	37.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_ZnF_C2H2
BNC1	646	genome.wustl.edu	37	15	83933478	83933478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001717.3	-1	reviewed	p.E175D	1.000	102	0%	49	22.4%	0	-	benign(0.054)	deleterious(0.01)	neutral(0.409)	NULL
BNC1	646	genome.wustl.edu	37	15	83935606	83935606	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001717.3	-1	reviewed	p.I139	0.993	41	0%	36	36.1%	0	-	-	-	-	NULL
LOC648809	648809	genome.wustl.edu	37	15	84795269	84795269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001713991.2	+1	model	p.A179V	0.999	145	0%	68	19.1%	0	-	-	-	-	superfamily_Translation proteins
SEC11A	23478	genome.wustl.edu	37	15	85213986	85213986	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014300.2	-1	provisional	p.T153	0.111	82	0%	143	34.3%	241	44.3%	-	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85399973	85399973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020778.4	+1	validated	p.E870D	0.004	214	0%	310	29.4%	1	0%	benign(0)	tolerated(1)	-	NULL
PDE8A	5151	genome.wustl.edu	37	15	85669508	85669508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002605.2	+1	validated	p.R719Q	0.980	113	0%	56	25%	14	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
AKAP13	11214	genome.wustl.edu	37	15	86262461	86262461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006738.4	+1	reviewed	p.F2056L	0.997	179	0%	65	46.2%	7	57.1%	probably_damaging(0.965)	tolerated(0.08)	deleterious(0.707)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
AGBL1	123624	genome.wustl.edu	37	15	86790919	86790919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152336.2	+1	validated	p.A136T	1.000	28	0%	28	25%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
LOC100288732	100288732	genome.wustl.edu	37	15	88671916	88671916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343392.1	+1	model	p.Q64K	0.132	76	0%	73	26%	0	-	-	-	-	NULL
DET1	55070	genome.wustl.edu	37	15	89070886	89070886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017996.3	-1	validated	p.E416D	1.000	92	0%	167	29.3%	13	46.1%	benign(0.076)	tolerated(0.61)	neutral(0.009)	HMMPfam_Det1
ACAN	176	genome.wustl.edu	37	15	89382240	89382240	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013227.3	+1	reviewed	p.I139	0.092	72	0%	76	35.5%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MFGE8	4240	genome.wustl.edu	37	15	89442929	89442929	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005928.2	-1	validated	p.A328	0.000	71	0%	131	24.4%	321	34.2%	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
MFGE8	4240	genome.wustl.edu	37	15	89453024	89453024	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005928.2	-1	validated	p.T68	0.001	84	0%	137	35%	288	32.2%	-	-	-	PatternScan_EGF_2,superfamily_EGF/Laminin
FANCI	55215	genome.wustl.edu	37	15	89817416	89817416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113378.1	+1	reviewed	p.K331N	0.228	124	0%	66	30.3%	6	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FANCI	55215	genome.wustl.edu	37	15	89834847	89834847	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113378.1	+1	reviewed	p.K632Q	1.000	167	0%	218	30.7%	20	65%	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	NULL
FANCI	55215	genome.wustl.edu	37	15	89856142	89856142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113378.1	+1	reviewed	p.S1220I	0.682	79	0%	94	25.5%	19	63.1%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	NULL
RHCG	51458	genome.wustl.edu	37	15	90026324	90026324	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016321.1	-1	provisional	p.E166*	1.000	50	0%	72	37.5%	2	0%	-	-	-	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
C15orf42	90381	genome.wustl.edu	37	15	90162962	90162962	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152259.3	+1	validated	p.R1015*	1.000	92	0%	103	23.3%	4	25%	-	-	-	NULL
C15orf42	90381	genome.wustl.edu	37	15	90167498	90167498	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152259.3	+1	validated	p.V1319	0.040	67	0%	88	31.8%	6	50%	-	-	-	NULL
PEX11A	8800	genome.wustl.edu	37	15	90226887	90226887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003847.1	-1	provisional	p.K155N	0.000	182	0%	165	26.1%	12	41.6%	possibly_damaging(0.7)	tolerated(0.4)	neutral(0.268)	HMMPfam_PEX11
SEMA4B	10509	genome.wustl.edu	37	15	90764602	90764602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020210.3	+1	validated	p.G200D	1.000	24	0%	47	34%	46	65.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ZNF774	342132	genome.wustl.edu	37	15	90903827	90903827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004309.2	+1	validated	p.R255I	1.000	39	0%	36	44.4%	3	66.6%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IQGAP1	8826	genome.wustl.edu	37	15	91040551	91040551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003870.3	+1	reviewed	p.E1613D	1.000	68	0%	49	22.4%	37	27%	possibly_damaging(0.706)	tolerated(0.22)	neutral(0.296)	NULL
CRTC3	64784	genome.wustl.edu	37	15	91185346	91185346	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022769.3	+1	validated	p.E612*	1.000	61	0%	84	34.5%	16	50%	-	-	-	NULL
SV2B	9899	genome.wustl.edu	37	15	91803627	91803627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014848.4	+1	validated	p.E332D	1.000	156	0%	89	32.6%	0	-	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLCO3A1	28232	genome.wustl.edu	37	15	92638181	92638181	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013272.3	+1	validated	p.I239	1.000	286	0.7%	158	32.9%	2	0%	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
CHD2	1106	genome.wustl.edu	37	15	93489438	93489438	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001271.3	+1	reviewed	p.E457*	1.000	59	0%	47	36.2%	17	52.9%	-	-	-	superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD2	1106	genome.wustl.edu	37	15	93547887	93547887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001271.3	+1	reviewed	p.R1440Q	1.000	104	0%	96	24%	28	28.5%	possibly_damaging(0.644)	tolerated(0.41)	neutral(0.240)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RGMA	56963	genome.wustl.edu	37	15	93595242	93595242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020211.2	-1	reviewed	p.A209V	0.001	31	0%	78	29.5%	19	42.1%	benign(0.024)	tolerated(0.06)	neutral(0.324)	HMMPfam_RGM_N
FAM149B2	100113400	genome.wustl.edu	37	15	97301205	97301205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000398303	+1	known	p.Q169R	0.383	164	0%	238	25.2%	0	-	-	-	-	NULL
SPATA8	145946	genome.wustl.edu	37	15	97328313	97328313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173499.3	+1	provisional	p.R95K	0.000	128	0%	176	31.2%	0	-	unknown(0)	-	-	NULL
FAM169B	283777	genome.wustl.edu	37	15	98995162	98995162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182562.2	-1	validated	p.W88R	0.042	71	0%	37	35.1%	0	-	benign(0)	tolerated(1)	-	NULL
IGF1R	3480	genome.wustl.edu	37	15	99465635	99465635	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000875.3	+1	reviewed	p.F820	0.623	74	0%	72	37.5%	24	33.3%	-	-	-	NULL
SYNM	23336	genome.wustl.edu	37	15	99672779	99672779	+	Missense_Mutation	SNP	G	G	A	rs138650780	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000336292	+1	known	p.R1404Q	0.000	79	0%	114	34.2%	0	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
TTC23	64927	genome.wustl.edu	37	15	99758880	99758880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040655.1	-1	validated	p.R165K	0.994	346	0%	213	34.7%	7	42.8%	benign(0.01)	tolerated(0.91)	neutral(0.001)	HMMSmart_SM00028,superfamily_TPR-like
HSP90B2P	7190	genome.wustl.edu	37	15	99799914	99799914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000378906	+1	known	p.R338*	0.003	128	0%	106	32.1%	8	0%	-	-	-	HMMPfam_HSP90,superfamily_SSF110942
CERS3	204219	genome.wustl.edu	37	15	101020206	101020206	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178842.3	-1	validated	p.A151	0.076	71	0%	57	26.3%	0	-	-	-	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
LRRK1	79705	genome.wustl.edu	37	15	101528955	101528955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024652.3	+1	validated	p.A184T	1.000	61	0%	37	37.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ank,superfamily_Ankyrin repeat
CHSY1	22856	genome.wustl.edu	37	15	101718515	101718515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000254190	-1	known	p.R496I	0.007	83	0%	105	30.5%	27	14.8%	benign(0.004)	tolerated(0.24)	neutral(0.037)	HMMPfam_CHGN,superfamily_SSF53448
OR4F4	26682	genome.wustl.edu	37	15	102462817	102462817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004195.2	-1	provisional	p.S149L	0.007	560	0%	229	17%	0	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	HMMPfam_7tm_1,superfamily_SSF81321
LOC100129478	100129478	genome.wustl.edu	37	16	281411	281411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001719774.2	+1	model	p.F93L	0.959	119	0%	258	28.3%	0	-	-	-	-	NULL
WDR90	197335	genome.wustl.edu	37	16	701235	701235	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145294.4	+1	provisional	p.P235	0.000	74	0%	121	35.5%	8	87.5%	-	-	-	NULL
PRR25	388199	genome.wustl.edu	37	16	855743	855743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013638.1	+1	provisional	p.A101T	0.001	28	0%	46	21.7%	0	-	unknown(0)	-	-	NULL
SSTR5	6755	genome.wustl.edu	37	16	1129693	1129693	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001053.3	+1	reviewed	p.A275	0.001	152	0.7%	256	25.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CACNA1H	8912	genome.wustl.edu	37	16	1265028	1265028	+	Silent	SNP	C	C	T	rs60938322	byCluster	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021098.2	+1	reviewed	p.F1662	0.014	348	0%	532	31.6%	4	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
BAIAP3	8938	genome.wustl.edu	37	16	1395990	1395991	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003933.3	+1	reviewed	p.C774fs	0.199:0.921	-	-	-	-	-	-	-	-	-	NULL
C16orf73	254528	genome.wustl.edu	37	16	1891940	1891940	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152764.2	-1	validated	p.Q305H	0.007	171	0%	194	32%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C16orf73	254528	genome.wustl.edu	37	16	1912118	1912118	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152764.2	-1	validated	e3-1	1.000	81	0%	87	31%	0	-	-	-	-	-
HS3ST6	64711	genome.wustl.edu	37	16	1962098	1962098	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009606.2	-1	validated	p.T143	0.995	39	0%	37	21.6%	1	100%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRAF7	84231	genome.wustl.edu	37	16	2226167	2226167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032271.2	+1	validated	p.D622N	1.000	31	0%	66	37.9%	193	45.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CASKIN1	57524	genome.wustl.edu	37	16	2235141	2235141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020764.3	-1	validated	p.A404T	0.000	30	0%	61	36.1%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
CCNF	899	genome.wustl.edu	37	16	2485828	2485828	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001761.2	+1	reviewed	p.F100	1.000	132	0%	185	31.9%	17	35.2%	-	-	-	superfamily_SSF81383
SRRM2	23524	genome.wustl.edu	37	16	2815124	2815124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016333.3	+1	validated	p.P1532L	0.993	66	0%	70	37.1%	102	46%	unknown(0)	-	-	NULL
FLYWCH1	84256	genome.wustl.edu	37	16	2979803	2979803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032296.2	+1	validated	p.F39L	0.105	39	0%	98	28.6%	18	38.8%	possibly_damaging(0.808)	tolerated(0.38)	neutral(0.322)	NULL
TIGD7	91151	genome.wustl.edu	37	16	3350146	3350146	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033208.2	-1	validated	p.R157*	0.809	139	0%	219	33.3%	15	60%	-	-	-	NULL
ZNF434	54925	genome.wustl.edu	37	16	3433324	3433324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017810.2	-1	provisional	p.R329I	0.988	104	0%	71	28.2%	7	42.8%	possibly_damaging(0.529)	tolerated(0.08)	deleterious(0.478)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF174	7727	genome.wustl.edu	37	16	3452349	3452349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003450.2	+1	validated	p.K115N	0.999	46	0%	63	23.8%	18	55.5%	possibly_damaging(0.718)	deleterious(0)	deleterious(0.705)	HMMPfam_SCAN,HMMSmart_SM00431
CLUAP1	23059	genome.wustl.edu	37	16	3554789	3554789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015041.1	+1	provisional	p.N31T	1.000	202	0%	336	32.7%	10	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cluap1
NLRC3	197358	genome.wustl.edu	37	16	3607639	3607639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178844.2	-1	validated	p.A685D	1.000	157	0%	219	26.9%	2	0%	possibly_damaging(0.706)	tolerated(0.36)	neutral(0.274)	HMMSmart_SM00368,superfamily_RNI-like
SLX4	84464	genome.wustl.edu	37	16	3641185	3641185	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032444.2	-1	provisional	p.L818	0.860	158	0%	259	38.6%	8	37.5%	-	-	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3794921	3794921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004380.2	-1	reviewed	p.R1319Q	0.997	252	0%	252	33.3%	20	45%	unknown(0)	deleterious(0.01)	-	HMMPfam_DUF906
CREBBP	1387	genome.wustl.edu	37	16	3827632	3827632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004380.2	-1	reviewed	p.R714C	1.000	82	0%	129	26.4%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADCY9	115	genome.wustl.edu	37	16	4016169	4016169	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001116.2	-1	reviewed	p.F1223	0.879	121	0.8%	219	32.4%	11	27.2%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
ADCY9	115	genome.wustl.edu	37	16	4016839	4016839	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001116.2	-1	reviewed	p.F1000C	0.999	39	0%	60	40%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADCY9	115	genome.wustl.edu	37	16	4029277	4029277	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001116.2	-1	reviewed	e7-1	1.000	44	0%	85	37.6%	0	-	-	-	-	-
SRL	6345	genome.wustl.edu	37	16	4242930	4242930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098814.1	-1	validated	p.D216N	1.000	40	0%	34	32.4%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	superfamily_SSF52540
SEPT12	124404	genome.wustl.edu	37	16	4835879	4835879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144605.3	-1	validated	p.E101D	1.000	65	0%	149	27.5%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABAT	18	genome.wustl.edu	37	16	8873429	8873429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000663.4	+1	reviewed	p.L455V	0.097	121	0%	112	22.3%	10	50%	benign(0)	tolerated(0.32)	neutral(0.024)	superfamily_PyrdxlP-dep_Trfase_major
TMEM186	25880	genome.wustl.edu	37	16	8890167	8890167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015421.3	-1	validated	p.Q95R	0.998	104	0%	160	29.4%	38	39.4%	benign(0.081)	tolerated(0.1)	neutral(0.292)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857544	9857544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000833.3	-1	reviewed	p.I1286S	1.000	142	0%	74	41.9%	0	-	benign(0.299)	deleterious(0)	deleterious(0.537)	HMMPfam_NMDAR2_C
NUBP1	4682	genome.wustl.edu	37	16	10855621	10855621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002484.2	+1	validated	p.S242Y	0.999	62	0%	105	29.5%	56	35.7%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_ParA,superfamily_P-loop containing nucleoside triphosphate hydrolases
CIITA	4261	genome.wustl.edu	37	16	11001030	11001030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000246.3	+1	reviewed	p.D561N	0.926	12	0%	28	39.3%	14	28.5%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_NACHT
CIITA	4261	genome.wustl.edu	37	16	11001528	11001528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000246.3	+1	reviewed	p.E727K	0.091	46	0%	55	29.1%	16	31.2%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
TXNDC11	51061	genome.wustl.edu	37	16	11785384	11785384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015914.5	-1	provisional	p.E554D	0.993	122	0%	131	27.5%	70	40%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
ZC3H7A	29066	genome.wustl.edu	37	16	11861372	11861372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014153.2	-1	provisional	p.L475V	1.000	346	0%	205	28.3%	17	41.1%	probably_damaging(0.965)	tolerated(0.08)	deleterious(0.707)	NULL
SNX29	92017	genome.wustl.edu	37	16	12492330	12492330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080530.2	+1	provisional	p.E258K	0.991	160	0%	74	33.8%	2	0%	possibly_damaging(0.824)	tolerated(0.09)	deleterious(0.609)	NULL
SNX29	92017	genome.wustl.edu	37	16	12497348	12497348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080530.2	+1	provisional	p.L282I	1.000	212	0%	134	31.3%	4	25%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_SM00312,superfamily_PX domain
MKL2	57496	genome.wustl.edu	37	16	14311132	14311132	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014048.3	+1	validated	p.E168*	1.000	96	0%	31	22.6%	6	0%	-	-	-	NULL
PARN	5073	genome.wustl.edu	37	16	14693805	14693805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002582.2	-1	reviewed	p.D266Y	1.000	125	0%	102	12.7%	28	14.2%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
RRN3	54700	genome.wustl.edu	37	16	15170405	15170405	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000327307	-1	known	p.L290V	0.010	132	0%	149	29.5%	0	-	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15703483	15703483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014647.3	-1	validated	p.F1284C	1.000	101	0%	76	27.6%	22	59%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15719487	15719487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014647.3	-1	validated	p.Q565H	1.000	152	0.7%	102	14.7%	7	14.2%	benign(0.004)	tolerated(0.21)	neutral(0.044)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
KIAA0430	9665	genome.wustl.edu	37	16	15727480	15727480	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014647.3	-1	validated	p.N409	1.000	85	0%	60	40%	9	77.7%	-	-	-	HMMPfam_DUF537
MYH11	4629	genome.wustl.edu	37	16	15802674	15802674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000396320	-1	known	p.R1944H	1.000	52	0%	53	32.1%	1	0%	benign(0.012)	tolerated(0.14)	neutral(0.250)	NULL
MYH11	4629	genome.wustl.edu	37	16	15814739	15814739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040114.1	-1	reviewed	p.R1590Q	1.000	99	0%	132	34.1%	9	0%	probably_damaging(0.972)	deleterious(0.04)	deleterious(0.763)	HMMPfam_Myosin_tail_1
MYH11	4629	genome.wustl.edu	37	16	15839036	15839036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040114.1	-1	reviewed	p.A831T	1.000	87	0%	80	27.5%	5	0%	possibly_damaging(0.839)	tolerated(0.22)	neutral(0.362)	superfamily_SSF52540
ABCC1	4363	genome.wustl.edu	37	16	16162153	16162153	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004996.3	+1	reviewed	p.I606	0.945	117	0%	72	34.7%	44	38.6%	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC1	4363	genome.wustl.edu	37	16	16177361	16177361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004996.3	+1	reviewed	p.I752L	1.000	75	0%	38	34.2%	34	50%	benign(0.285)	tolerated(1)	neutral(0.087)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC6	368	genome.wustl.edu	37	16	16253384	16253384	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001171.5	-1	reviewed	p.I1230	0.933	106	0%	89	31.5%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC6P1	653190	genome.wustl.edu	37	16	18602456	18602456	+	RNA	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_003569.1	+1	provisional	NULL	0.003	75	0%	54	29.6%	0	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	-
SMG1	23049	genome.wustl.edu	37	16	18866194	18866194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015092.4	-1	reviewed	p.E1423K	1.000	162	0%	93	20.4%	3	33.3%	possibly_damaging(0.653)	tolerated(0.11)	deleterious(0.501)	superfamily_ARM repeat
TMC5	79838	genome.wustl.edu	37	16	19488796	19488796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105248.1	+1	validated	p.L709F	1.000	282	0%	175	35.4%	0	-	benign(0.346)	deleterious(0.01)	deleterious(0.515)	NULL
C16orf88	400506	genome.wustl.edu	37	16	19726276	19726276	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012991.2	-1	provisional	p.R28*	0.091	69	0%	99	27.3%	20	35%	-	-	-	NULL
IQCK	124152	genome.wustl.edu	37	16	19775186	19775186	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153208.1	+1	provisional	p.F164C	1.000	211	0%	154	40.9%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GP2	2813	genome.wustl.edu	37	16	20328557	20328557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007240.1	-1	validated	p.S468Y	0.000	73	0%	23	47.8%	0	-	benign(0.372)	tolerated(0.82)	neutral(0.119)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
GP2	2813	genome.wustl.edu	37	16	20335551	20335551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007240.1	-1	validated	p.S41L	0.012	31	0%	20	20%	0	-	possibly_damaging(0.832)	deleterious(0.01)	deleterious(0.723)	NULL
PDILT	204474	genome.wustl.edu	37	16	20387484	20387484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174924.1	-1	provisional	p.R150Q	1.000	101	0%	59	39%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Thiordxn-like_fd
ACSM2B	348158	genome.wustl.edu	37	16	20576007	20576007	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105069.1	-1	validated	p.W54*	1.000	251	0%	123	22.8%	0	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20788724	20788724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005622.3	+1	validated	p.L154V	1.000	67	0%	65	24.6%	18	27.7%	possibly_damaging(0.928)	deleterious(0)	deleterious(0.820)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20792346	20792346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005622.3	+1	validated	p.T278M	1.000	261	0%	124	46%	35	54.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20793090	20793090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005622.3	+1	validated	p.V334I	0.939	176	0%	71	25.4%	23	43.4%	benign(0.07)	tolerated(0.88)	neutral(0.005)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ERI2	112479	genome.wustl.edu	37	16	20809418	20809418	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142725.1	-1	validated	p.S568	0.000	302	0%	194	28.4%	5	100%	-	-	-	NULL
LOC81691	81691	genome.wustl.edu	37	16	20835783	20835783	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030941.2	+1	validated	p.F213L	0.997	223	0%	93	30.1%	5	40%	benign(0.106)	deleterious(0.02)	neutral(0.391)	superfamily_Ribonuclease H-like
DNAH3	55567	genome.wustl.edu	37	16	20996835	20996835	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017539.1	-1	provisional	p.R2410M	0.073	78	0%	102	39.2%	0	-	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	20999158	20999158	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017539.1	-1	provisional	p.L2247	0.990	133	0%	235	37%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21011658	21011658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017539.1	-1	provisional	p.F2103L	1.000	232	0%	159	28.9%	0	-	possibly_damaging(0.476)	deleterious(0.01)	deleterious(0.562)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21147832	21147832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017539.1	-1	provisional	p.R233S	1.000	174	0%	118	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZP2	7783	genome.wustl.edu	37	16	21218198	21218198	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003460.1	-1	reviewed	p.G148	0.000	149	0%	57	33.3%	0	-	-	-	-	NULL
ANKS4B	257629	genome.wustl.edu	37	16	21245126	21245126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145865.2	+1	validated	p.R23Q	1.000	118	0%	58	19%	0	-	possibly_damaging(0.883)	deleterious(0.02)	deleterious(0.728)	superfamily_Ankyrin repeat
ANKS4B	257629	genome.wustl.edu	37	16	21261384	21261384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145865.2	+1	validated	p.S166I	0.093	119	0%	59	32.2%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
METTL9	51108	genome.wustl.edu	37	16	21636355	21636355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016025.3	+1	validated	p.D224Y	1.000	112	0%	153	37.3%	144	42.3%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	HMMPfam_DREV,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
OTOA	146183	genome.wustl.edu	37	16	21696597	21696597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144672.3	+1	reviewed	p.K105T	0.998	32	0%	30	20%	0	-	possibly_damaging(0.692)	tolerated(0.09)	deleterious(0.544)	NULL
VWA3A	146177	genome.wustl.edu	37	16	22142928	22142928	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173615.3	+1	validated	p.R584	0.000	54	0%	45	15.6%	1	0%	-	-	-	superfamily_vWA-like
VWA3A	146177	genome.wustl.edu	37	16	22153010	22153010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173615.3	+1	validated	p.V831M	0.981	86	0%	68	33.8%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
VWA3A	146177	genome.wustl.edu	37	16	22153013	22153013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173615.3	+1	validated	p.G832S	1.000	84	0%	67	28.4%	0	-	probably_damaging(0.999)	tolerated(0.28)	deleterious(0.522)	NULL
VWA3A	146177	genome.wustl.edu	37	16	22153991	22153991	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173615.3	+1	validated	p.S833A	0.006	47	0%	61	26.2%	0	-	benign(0.002)	tolerated(1)	-	NULL
RRN3P3	100131998	genome.wustl.edu	37	16	22447015	22447015	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000415797	-1	known	p.F40C	1.000	39	0%	101	28.7%	3	0%	-	-	-	HMMPfam_RRN3
HS3ST2	9956	genome.wustl.edu	37	16	22926601	22926601	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006043.1	+1	reviewed	p.G274	0.167	75	0%	33	12.1%	1	0%	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
USP31	57478	genome.wustl.edu	37	16	23080121	23080121	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020718.3	-1	validated	p.K1102T	0.111	84	0%	79	29.1%	3	66.6%	benign(0.313)	tolerated(0.25)	neutral(0.135)	NULL
SCNN1G	6340	genome.wustl.edu	37	16	23203723	23203723	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039.3	+1	reviewed	p.I223	0.998	110	0%	113	25.7%	2	50%	-	-	-	HMMPfam_ASC
SCNN1B	6338	genome.wustl.edu	37	16	23382703	23382703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000336.2	+1	reviewed	p.E322K	0.997	62	0%	55	34.5%	4	50%	possibly_damaging(0.701)	tolerated(0.45)	neutral(0.264)	HMMPfam_ASC
RBBP6	5930	genome.wustl.edu	37	16	24564851	24564851	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006910.4	+1	reviewed	p.A107	0.799	315	0%	157	23.6%	20	60%	-	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24582237	24582237	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006910.4	+1	reviewed	p.E1284*	1.000	51	0%	85	27.1%	21	42.8%	-	-	-	NULL
RBBP6	5930	genome.wustl.edu	37	16	24583347	24583347	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006910.4	+1	reviewed	p.E1654*	1.000	69	0%	108	38%	21	42.8%	-	-	-	NULL
SLC5A11	115584	genome.wustl.edu	37	16	24888673	24888673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052944.2	+1	provisional	p.Y191C	1.000	86	0%	60	30%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_SSF
SLC5A11	115584	genome.wustl.edu	37	16	24920280	24920280	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052944.2	+1	provisional	p.R505*	0.244	84	0%	86	31.4%	0	-	-	-	-	NULL
ZKSCAN2	342357	genome.wustl.edu	37	16	25251325	25251325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012981.4	-1	validated	p.R906W	0.901	145	0%	68	30.9%	4	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GTF3C1	2975	genome.wustl.edu	37	16	27494433	27494433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001520.3	-1	validated	p.E1339K	0.998	107	0%	151	29.8%	47	31.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27495632	27495632	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001520.3	-1	validated	p.L1301	0.004	98	0%	129	33.3%	67	44.7%	-	-	-	NULL
KIAA0556	23247	genome.wustl.edu	37	16	27777741	27777741	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015202.2	+1	validated	p.I1307	0.994	47	0%	63	25.4%	11	36.3%	-	-	-	superfamily_Galactose-binding domain-like
GSG1L	146395	genome.wustl.edu	37	16	27974516	27974516	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001109763.1	-1	validated	p.C120G	0.996	124	0%	79	12.7%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_GSG-1
ATXN2L	11273	genome.wustl.edu	37	16	28844608	28844608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148414.1	+1	reviewed	p.S630R	0.641	59	0%	88	23.9%	137	39.4%	benign(0.132)	deleterious(0.02)	neutral(0.394)	NULL
ATP2A1	487	genome.wustl.edu	37	16	28900171	28900171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173201.2	+1	reviewed	p.A331V	1.000	77	0%	90	30%	1	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
RABEP2	79874	genome.wustl.edu	37	16	28919975	28919975	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024816.2	-1	validated	p.S400	0.939	75	0%	141	29.8%	42	64.2%	-	-	-	HMMPfam_Rab5-bind
RRN3P2	653390	genome.wustl.edu	37	16	29088081	29088081	+	Missense_Mutation	SNP	C	C	T	rs2432514	byCluster	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000415221	+1	known	p.T65M	0.995	196	0%	415	36.6%	0	-	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	NULL
MVP	9961	genome.wustl.edu	37	16	29855977	29855977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005115.3	+1	reviewed	p.R600C	1.000	55	0%	93	43%	116	23.2%	benign(0.196)	tolerated(0.15)	neutral(0.260)	NULL
ITGAL	3683	genome.wustl.edu	37	16	30490775	30490775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002209.2	+1	reviewed	p.S190L	1.000	110	0%	93	30.1%	12	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
SRCAP	10847	genome.wustl.edu	37	16	30724019	30724019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006662.2	+1	validated	p.L671F	1.000	132	0%	135	30.4%	27	55.5%	unknown(0)	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SETD1A	9739	genome.wustl.edu	37	16	30970478	30970478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014712.1	+1	provisional	p.D73Y	1.000	176	0%	327	31.5%	18	38.8%	possibly_damaging(0.94)	-	-	NULL
SETD1A	9739	genome.wustl.edu	37	16	30977560	30977560	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014712.1	+1	provisional	p.P786	0.000	15	0%	36	36.1%	31	48.3%	-	-	-	NULL
PRSS53	339105	genome.wustl.edu	37	16	31097751	31097751	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039503.2	-1	validated	p.I190	0.997	87	0%	146	26%	7	28.5%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ITGAM	3684	genome.wustl.edu	37	16	31286869	31286869	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000632.3	+1	reviewed	e9-1	1.000	105	0%	55	43.6%	0	-	-	-	-	-
ITGAM	3684	genome.wustl.edu	37	16	31341654	31341654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000632.3	+1	reviewed	p.R1029I	0.022	48	0%	82	37.8%	11	0%	possibly_damaging(0.78)	deleterious(0.02)	deleterious(0.674)	HMMPfam_Integrin_alpha2
ITGAD	3681	genome.wustl.edu	37	16	31413498	31413498	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005353.2	+1	validated	p.N164H	0.005	51	0%	75	30.7%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
ITGAD	3681	genome.wustl.edu	37	16	31434447	31434447	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005353.2	+1	validated	p.S931	0.999	96	0%	152	26.3%	1	0%	-	-	-	HMMPfam_Integrin_alpha2
ITGAD	3681	genome.wustl.edu	37	16	31435264	31435264	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005353.2	+1	validated	p.F1048	0.577	86	0%	99	35.4%	1	0%	-	-	-	NULL
ZNF843	283933	genome.wustl.edu	37	16	31447844	31447844	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136509.1	-1	provisional	p.E109	0.020	25	0%	54	31.5%	0	-	-	-	-	NULL
ZNF720	124411	genome.wustl.edu	37	16	31734636	31734636	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130913.1	+1	validated	p.W63fs	0.006	-	-	-	-	-	-	-	-	-	HMMSmart_SM00349
ZNF720	124411	genome.wustl.edu	37	16	31765148	31765148	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130913.1	+1	validated	p.Q96H	0.536	142	0%	62	21%	5	20%	possibly_damaging(0.647)	tolerated(0.07)	deleterious(0.546)	NULL
ZNF267	10308	genome.wustl.edu	37	16	31927273	31927273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003414.4	+1	validated	p.R568Q	0.999	108	0%	102	21.6%	6	16.6%	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF267	10308	genome.wustl.edu	37	16	31927357	31927357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003414.4	+1	validated	p.R596Q	0.130	128	0%	129	34.1%	11	45.4%	probably_damaging(0.982)	tolerated(0.38)	neutral(0.444)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC401847	401847	genome.wustl.edu	37	16	33605616	33605616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001718104.2	+1	model	p.K95N	0.960	111	0%	63	19%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
GPT2	84706	genome.wustl.edu	37	16	46934656	46934656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133443.2	+1	validated	p.K132N	1.000	53	0%	92	30.4%	102	40.1%	possibly_damaging(0.916)	tolerated(0.13)	deleterious(0.619)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
DNAJA2	10294	genome.wustl.edu	37	16	46991003	46991003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005880.3	-1	reviewed	p.D393Y	1.000	168	0%	109	32.1%	159	42.7%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ITFG1	81533	genome.wustl.edu	37	16	47192820	47192820	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030790.3	-1	provisional	p.I581	1.000	80	0%	53	28.3%	130	51.5%	benign(0.048)	-	-	NULL
PHKB	5257	genome.wustl.edu	37	16	47531349	47531349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000293.2	+1	reviewed	p.R39I	1.000	115	0%	134	36.6%	20	55%	possibly_damaging(0.908)	tolerated(0.09)	deleterious(0.658)	HMMPfam_PHK_AB
ABCC12	94160	genome.wustl.edu	37	16	48139248	48139248	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033226.2	-1	reviewed	e19-1	0.233	47	0%	53	35.8%	0	-	-	-	-	-
ABCC12	94160	genome.wustl.edu	37	16	48175190	48175190	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033226.2	-1	reviewed	p.K117T	1.000	93	0%	66	39.4%	0	-	possibly_damaging(0.875)	tolerated(0.1)	deleterious(0.627)	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48248806	48248806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032583.3	-1	reviewed	p.L412F	0.873	120	0%	96	29.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LONP2	83752	genome.wustl.edu	37	16	48381419	48381419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031490.2	+1	provisional	p.V647A	1.000	151	0%	93	35.5%	67	28.3%	benign(0.051)	tolerated(0.73)	neutral(0.005)	HMMPfam_Lon_C,superfamily_SSF52540
N4BP1	9683	genome.wustl.edu	37	16	48576983	48576983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153029.3	-1	validated	p.Q841H	0.830	139	0%	207	30.4%	38	31.5%	probably_damaging(0.984)	tolerated(0.06)	deleterious(0.753)	NULL
N4BP1	9683	genome.wustl.edu	37	16	48582018	48582018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153029.3	-1	validated	p.L709I	0.628	116	0%	113	21.2%	23	30.4%	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	NULL
ZNF423	23090	genome.wustl.edu	37	16	49671463	49671463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015069.2	-1	reviewed	p.E534K	1.000	127	0%	242	38.8%	63	42.8%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
PAPD5	64282	genome.wustl.edu	37	16	50258865	50258865	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040284.2	+1	validated	p.K300	1.000	238	0%	172	28.5%	13	30.7%	-	-	-	NULL
BRD7	29117	genome.wustl.edu	37	16	50383960	50383960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013263.3	-1	validated	p.D189Y	1.000	359	0%	169	32.5%	16	43.7%	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
NOD2	64127	genome.wustl.edu	37	16	50745557	50745557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022162.1	+1	reviewed	p.D579Y	0.996	36	0%	51	21.6%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYLD	1540	genome.wustl.edu	37	16	50821710	50821710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015247.2	+1	reviewed	p.F685L	1.000	70	0%	33	18.2%	19	36.8%	benign(0.016)	tolerated(0.06)	neutral(0.323)	HMMPfam_UCH,superfamily_Cysteine proteinases
SALL1	6299	genome.wustl.edu	37	16	51174062	51174062	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002968.2	-1	reviewed	p.L691I	1.000	33	0%	59	16.9%	11	45.4%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
TOX3	27324	genome.wustl.edu	37	16	52502432	52502432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080430.2	-1	reviewed	p.A48T	1.000	153	0.7%	76	26.3%	1	0%	possibly_damaging(0.86)	tolerated(0.51)	neutral(0.342)	NULL
CHD9	80205	genome.wustl.edu	37	16	53279254	53279254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025134.4	+1	validated	p.K1021E	1.000	130	0%	80	11.3%	0	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	HMMPfam_SNF2_N,HMMSmart_DEXDc,superfamily_SSF52540
CHD9	80205	genome.wustl.edu	37	16	53319602	53319602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025134.4	+1	validated	p.F1688V	1.000	124	0%	50	30%	2	50%	benign(0.047)	deleterious(0.01)	neutral(0.409)	superfamily_SSF52540
LOC643802	643802	genome.wustl.edu	37	16	53404692	53404692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001719265.1	-1	model	p.M132I	1.000	41	0%	73	35.6%	0	-	-	-	-	HMMPfam_Mpp10
RBL2	5934	genome.wustl.edu	37	16	53476577	53476577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005611.3	+1	validated	p.E127K	1.000	64	0%	58	25.9%	13	30.7%	benign(0.406)	deleterious(0.03)	deleterious(0.495)	HMMSmart_CYCLIN
RBL2	5934	genome.wustl.edu	37	16	53496543	53496543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005611.3	+1	validated	p.K512N	0.997	124	0%	66	33.3%	10	60%	benign(0.014)	deleterious(0.01)	neutral(0.406)	HMMPfam_RB_A,superfamily_Cyclin_like
RBL2	5934	genome.wustl.edu	37	16	53524105	53524105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005611.3	+1	validated	p.L1105I	1.000	88	0%	66	31.8%	22	40.9%	possibly_damaging(0.943)	tolerated(0.54)	neutral(0.395)	NULL
RPGRIP1L	23322	genome.wustl.edu	37	16	53692754	53692754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015272.2	-1	reviewed	p.L427R	0.919	379	0%	201	30.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CAPNS2	84290	genome.wustl.edu	37	16	55601144	55601144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032330.1	+1	validated	p.K159T	0.995	54	0%	24	20.8%	0	-	benign(0.006)	tolerated(0.07)	neutral(0.319)	superfamily_SSF47473
SLC6A2	6530	genome.wustl.edu	37	16	55690682	55690682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001043.3	+1	reviewed	p.R26W	0.000	30	0%	23	30.4%	1	100%	possibly_damaging(0.575)	deleterious(0.01)	deleterious(0.603)	NULL
OGFOD1	55239	genome.wustl.edu	37	16	56496523	56496523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018233.3	+1	validated	p.S142F	1.000	212	0%	135	34.1%	27	37%	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
OGFOD1	55239	genome.wustl.edu	37	16	56510060	56510060	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018233.3	+1	validated	p.K524	0.994	134	0%	48	16.7%	31	41.9%	-	-	-	NULL
NUP93	9688	genome.wustl.edu	37	16	56868086	56868086	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014669.3	+1	validated	p.F528	0.978	61	0%	31	38.7%	72	44.4%	-	-	-	HMMPfam_Nic96
CPNE2	221184	genome.wustl.edu	37	16	57159811	57159811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152727.4	+1	reviewed	p.D323N	1.000	150	0%	194	33%	111	38.7%	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMSmart_VWA,superfamily_SSF53300
CX3CL1	6376	genome.wustl.edu	37	16	57416521	57416521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002996.3	+1	provisional	p.E257D	0.001	27	0%	31	25.8%	27	44.4%	benign(0.244)	deleterious(0)	deleterious(0.469)	NULL
GPR97	222487	genome.wustl.edu	37	16	57717872	57717872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170776.4	+1	validated	p.D304Y	1.000	135	0%	117	29.9%	0	-	probably_damaging(0.981)	tolerated(0.14)	deleterious(0.675)	HMMPfam_7tm_2
CCDC135	84229	genome.wustl.edu	37	16	57738798	57738798	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032269.5	+1	validated	p.K237T	0.000	98	0%	115	29.6%	0	-	benign(0.071)	tolerated(0.19)	neutral(0.054)	NULL
CNGB1	1258	genome.wustl.edu	37	16	57954409	57954409	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001297.4	-1	reviewed	p.S561	0.962	72	0%	49	32.7%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
PRSS54	221191	genome.wustl.edu	37	16	58318587	58318587	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080492.1	-1	provisional	p.I187	0.948	142	0%	112	28.6%	0	-	-	-	-	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PRSS54	221191	genome.wustl.edu	37	16	58325012	58325012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080492.1	-1	provisional	p.F38L	0.001	38	0%	31	29%	0	-	benign(0.003)	tolerated(0.6)	neutral(0.004)	superfamily_Pept_Ser_Cys
SLC38A7	55238	genome.wustl.edu	37	16	58705075	58705075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018231.1	-1	provisional	p.R369W	1.000	35	0%	48	33.3%	18	27.7%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Aa_trans
SLC38A7	55238	genome.wustl.edu	37	16	58706134	58706134	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018231.1	-1	provisional	p.F299	1.000	40	0%	45	17.8%	17	41.1%	-	-	-	HMMPfam_Aa_trans
CDH8	1006	genome.wustl.edu	37	16	61687749	61687749	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001796.2	-1	reviewed	p.V721	0.391	114	0%	76	27.6%	0	-	-	-	-	HMMPfam_Cadherin_C
CDH8	1006	genome.wustl.edu	37	16	61851614	61851614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001796.2	-1	reviewed	p.K349I	1.000	61	0%	29	17.2%	0	-	possibly_damaging(0.588)	deleterious(0.03)	deleterious(0.568)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH5	1003	genome.wustl.edu	37	16	66430089	66430089	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001795.3	+1	reviewed	p.E449*	0.999	53	0%	83	24.1%	6	16.6%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TK2	7084	genome.wustl.edu	37	16	66575806	66575806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004614.4	-1	reviewed	p.F111L	1.000	74	0%	82	28%	25	40%	benign(0.009)	tolerated(0.7)	neutral(0.003)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC79	283847	genome.wustl.edu	37	16	66822113	66822113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136505.1	-1	provisional	p.R120I	1.000	68	0%	69	31.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM repeat
CCDC79	283847	genome.wustl.edu	37	16	66824505	66824505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136505.1	-1	provisional	p.E88D	0.883	148	0%	155	38.1%	0	-	probably_damaging(0.985)	deleterious(0.05)	deleterious(0.777)	superfamily_ARM repeat
CDH16	1014	genome.wustl.edu	37	16	66945874	66945874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004062.2	-1	reviewed	p.V573A	0.333	100	0%	124	31.5%	7	28.5%	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_Cadherin,superfamily_Cadherin-like
CDH16	1014	genome.wustl.edu	37	16	66947101	66947101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004062.2	-1	reviewed	p.E329D	0.769	83	0%	94	26.6%	0	-	benign(0.271)	tolerated(0.06)	neutral(0.352)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
RRAD	6236	genome.wustl.edu	37	16	66956020	66956020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128850.1	-1	validated	p.R296C	0.987	62	0%	93	36.6%	7	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CES2	8824	genome.wustl.edu	37	16	66975531	66975531	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003869.4	+1	reviewed	p.F410	0.012	69	0%	103	34%	14	35.7%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
CES4A	283848	genome.wustl.edu	37	16	67029640	67029640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173815.4	+1	validated	p.F56L	0.581	100	0%	154	36.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_COesterase,superfamily_SSF53474
FHOD1	29109	genome.wustl.edu	37	16	67270593	67270593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013241.2	-1	reviewed	p.G396S	0.001	33	0%	60	30%	21	38%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
PLEKHG4	25894	genome.wustl.edu	37	16	67315038	67315038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129727.1	+1	reviewed	p.R255Q	0.864	59	0%	131	28.2%	2	50%	benign(0.413)	deleterious(0)	deleterious(0.578)	NULL
PLEKHG4	25894	genome.wustl.edu	37	16	67316644	67316644	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129727.1	+1	reviewed	e10-1	1.000	33	0%	73	35.6%	0	-	-	-	-	-
KCTD19	146212	genome.wustl.edu	37	16	67331522	67331522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100915.1	-1	provisional	p.S344F	0.995	121	0%	157	40.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LRRC36	55282	genome.wustl.edu	37	16	67375943	67375943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018296.5	+1	validated	p.L52I	1.000	204	0%	69	27.5%	0	-	possibly_damaging(0.938)	tolerated(0.12)	deleterious(0.644)	HMMPfam_LRR_1,superfamily_L domain-like
ZDHHC1	29800	genome.wustl.edu	37	16	67432159	67432159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013304.2	-1	validated	p.H295N	0.909	88	0%	178	34.3%	10	40%	benign(0.026)	tolerated(0.13)	neutral(0.254)	NULL
RLTPR	146206	genome.wustl.edu	37	16	67682863	67682863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013838.1	+1	provisional	p.D526G	1.000	63	0%	136	14.7%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_RNI-like
ACD	65057	genome.wustl.edu	37	16	67694228	67694228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082486.1	-1	reviewed	p.L52I	0.000	7	0.000	24	0.250	0	-	benign(0.081)	-	-	NULL
PARD6A	50855	genome.wustl.edu	37	16	67696085	67696085	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016948.2	+1	reviewed	p.I192	1.000	113	0%	163	33.1%	10	40%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TSNAXIP1	55815	genome.wustl.edu	37	16	67857612	67857612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018430.2	+1	validated	p.E103D	0.494	101	0%	178	15.7%	2	50%	possibly_damaging(0.942)	tolerated(0.26)	neutral(0.421)	NULL
EDC4	23644	genome.wustl.edu	37	16	67916201	67916201	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014329.3	+1	validated	p.E1083*	1.000	121	0%	192	24%	44	15.9%	-	-	-	NULL
CTRL	1506	genome.wustl.edu	37	16	67965043	67965043	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001907.1	-1	provisional	p.E38	0.973	29	0%	47	34%	4	25%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SLC12A4	6560	genome.wustl.edu	37	16	67979321	67979321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005072.4	-1	validated	p.D995N	1.000	128	0%	257	32.3%	25	24%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
ENSG00000252026	0	genome.wustl.edu	37	16	68318176	68318176	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000516217	-1	novel	NULL	0.023	16	0%	29	24.1%	0	-	-	-	-	-
SMPD3	55512	genome.wustl.edu	37	16	68405671	68405671	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018667.3	-1	validated	p.L138	0.988	33	0%	84	29.8%	0	-	-	-	-	NULL
ZFP90	146198	genome.wustl.edu	37	16	68597128	68597128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133458.2	+1	provisional	p.K146N	1.000	73	0%	44	34.1%	3	33.3%	possibly_damaging(0.778)	tolerated(0.25)	neutral(0.328)	NULL
CDH3	1001	genome.wustl.edu	37	16	68716312	68716312	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001793.4	+1	reviewed	p.I368	0.285	62	0%	68	39.7%	109	49.5%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TMCO7	79613	genome.wustl.edu	37	16	68961981	68961981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024562.1	+1	validated	p.L880F	1.000	49	0%	51	37.3%	0	-	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	superfamily_ARM repeat
NIP7	51388	genome.wustl.edu	37	16	69375492	69375492	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016101.3	+1	validated	p.A160	0.997	135	0%	221	28.5%	33	42.4%	-	-	-	HMMSmart_SM00359,superfamily_PUA domain-like
TERF2	7014	genome.wustl.edu	37	16	69391429	69391429	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005652.2	-1	reviewed	p.K446Q	0.953	284	0%	174	37.9%	8	37.5%	benign(0.269)	deleterious(0.01)	neutral(0.434)	HMMSmart_SM00717,superfamily_Homeodomain-like
NFAT5	10725	genome.wustl.edu	37	16	69729212	69729212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138713.2	+1	reviewed	p.E1530K	0.995	115	0%	87	31%	5	40%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
WWP2	11060	genome.wustl.edu	37	16	69973017	69973017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007014.3	+1	reviewed	p.E811K	1.000	112	0.9%	182	35.7%	59	33.8%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
CLEC18C	283971	genome.wustl.edu	37	16	70219856	70219856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173619.2	+1	validated	p.R427Q	0.998	295	0%	452	19.5%	7	28.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
COG4	25839	genome.wustl.edu	37	16	70548334	70548334	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015386.2	-1	validated	p.L150	0.955	96	0%	91	26.4%	43	39.5%	-	-	-	NULL
SF3B3	23450	genome.wustl.edu	37	16	70605009	70605009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012426.4	+1	reviewed	p.F1140L	1.000	56	0%	83	36.1%	369	48.5%	possibly_damaging(0.924)	tolerated(0.13)	deleterious(0.625)	HMMPfam_CPSF_A
VAC14	55697	genome.wustl.edu	37	16	70765486	70765486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018052.3	-1	validated	p.S525A	1.000	123	0%	197	41.6%	54	48.1%	possibly_damaging(0.902)	tolerated(0.19)	neutral(0.406)	superfamily_ARM-type_fold
HYDIN	54768	genome.wustl.edu	37	16	70874115	70874115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032821.2	-1	validated	p.M4298L	0.000	101	0%	49	18.4%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70896041	70896041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032821.2	-1	validated	p.S3895L	0.081	123	1.6%	52	32.7%	0	-	benign(0.016)	tolerated(0.18)	neutral(0.057)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70972554	70972554	+	Missense_Mutation	SNP	G	G	A	rs138000790		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032821.2	-1	validated	p.R2319W	0.000	175	0%	163	33.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	70972656	70972656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032821.2	-1	validated	p.R2285C	0.000	188	0%	160	31.9%	0	-	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HYDIN	54768	genome.wustl.edu	37	16	70977819	70977819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032821.2	-1	validated	p.H2188N	0.999	81	0%	45	26.7%	0	-	benign(0.002)	tolerated(0.99)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
FTSJD1	55783	genome.wustl.edu	37	16	71318239	71318239	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099642.1	-1	validated	p.G529*	1.000	52	0%	80	32.5%	3	0%	-	-	-	NULL
ZNF19	7567	genome.wustl.edu	37	16	71509908	71509908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006961.3	-1	reviewed	p.R181I	0.712	190	0%	133	33.1%	3	0%	probably_damaging(0.973)	deleterious(0.05)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CHST4	10164	genome.wustl.edu	37	16	71571215	71571215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005769.2	+1	reviewed	p.R212H	0.824	94	0%	63	23.8%	0	-	benign(0.408)	deleterious(0.03)	deleterious(0.496)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
TAT	6898	genome.wustl.edu	37	16	71606222	71606222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000353.2	-1	reviewed	p.E191D	0.996	147	0%	147	27.9%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
MARVELD3	91862	genome.wustl.edu	37	16	71660456	71660456	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017967.2	+1	validated	p.E108D	0.011	13	0%	17	35.3%	23	43.4%	possibly_damaging(0.791)	tolerated(0.11)	deleterious(0.568)	NULL
PHLPP2	23035	genome.wustl.edu	37	16	71682987	71682987	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015020.2	-1	validated	p.E1260*	1.000	107	0%	78	35.9%	1	0%	-	-	-	NULL
AP1G1	164	genome.wustl.edu	37	16	71782173	71782173	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030007.1	-1	reviewed	p.R539*	0.903	74	0%	80	33.8%	25	12%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP1G1	164	genome.wustl.edu	37	16	71823246	71823246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001030007.1	-1	reviewed	p.R46Q	1.000	136	0%	85	36.5%	11	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
PKD1L3	342372	genome.wustl.edu	37	16	71976624	71976624	+	Missense_Mutation	SNP	T	T	C	rs75734766		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000335106	-1	known	p.N1386S	0.001	131	0%	138	34.8%	0	-	-	-	-	NULL
PKD1L3	342372	genome.wustl.edu	37	16	71986823	71986823	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000335106	-1	known	p.V993	0.000	72	0%	105	23.8%	0	-	-	-	-	NULL
PMFBP1	83449	genome.wustl.edu	37	16	72153907	72153907	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031293.2	-1	validated	p.A950	0.000	396	0%	270	31.5%	4	0%	-	-	-	NULL
PMFBP1	83449	genome.wustl.edu	37	16	72159956	72159956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031293.2	-1	validated	p.L722I	0.024	112	0%	95	31.6%	0	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
ZFHX3	463	genome.wustl.edu	37	16	72821192	72821192	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006885.3	-1	reviewed	p.S3661	1.000	51	0%	115	31.3%	33	45.4%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72827575	72827575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006885.3	-1	reviewed	p.K3002N	1.000	165	0%	243	32.5%	26	57.6%	probably_damaging(1)	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ZFHX3	463	genome.wustl.edu	37	16	72828223	72828223	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006885.3	-1	reviewed	p.S2786	0.969	105	0%	132	28%	38	42.1%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72828370	72828370	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006885.3	-1	reviewed	p.E2737D	1.000	37	0%	59	25.4%	28	57.1%	probably_damaging(0.998)	-	-	superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72829282	72829282	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006885.3	-1	reviewed	p.A2433	0.861	212	0%	314	38.9%	27	37%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72923722	72923722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006885.3	-1	reviewed	p.R1119Q	1.000	68	0%	45	40%	12	33.3%	unknown(0)	-	-	HMMSmart_SM00451
PSMD7	5713	genome.wustl.edu	37	16	74334950	74334950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002811.3	+1	reviewed	p.V56A	1.000	170	0%	239	31.4%	114	48.2%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Mov34,HMMSmart_JAB_MPN
PSMD7	5713	genome.wustl.edu	37	16	74339547	74339547	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002811.3	+1	reviewed	p.K297N	0.992	121	0%	152	28.3%	204	45.5%	unknown(0)	tolerated(0.34)	-	NULL
GLG1	2734	genome.wustl.edu	37	16	74487212	74487212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012201.5	-1	validated	p.F1131L	1.000	98	0%	111	27%	251	47%	probably_damaging(0.999)	tolerated(0.51)	deleterious(0.499)	NULL
RFWD3	55159	genome.wustl.edu	37	16	74666557	74666557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018124.3	-1	validated	p.M481V	1.000	124	0%	95	25.3%	14	35.7%	possibly_damaging(0.783)	tolerated(0.22)	neutral(0.335)	superfamily_WD40_like
MLKL	197259	genome.wustl.edu	37	16	74719433	74719433	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152649.2	-1	validated	p.F257	1.000	243	0%	217	36.9%	5	20%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
WDR59	79726	genome.wustl.edu	37	16	74990458	74990458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030581.3	-1	validated	p.R52Q	1.000	114	0%	70	32.9%	12	33.3%	possibly_damaging(0.943)	tolerated(0.18)	neutral(0.444)	HMMSmart_SM00320,superfamily_WD40 repeat-like
LDHD	197257	genome.wustl.edu	37	16	75146775	75146775	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153486.2	-1	reviewed	p.I401	0.797	40	0%	49	22.4%	2	50%	-	-	-	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
ZFP1	162239	genome.wustl.edu	37	16	75203633	75203633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153688.2	+1	validated	p.E209K	1.000	52	0%	30	43.3%	5	40%	benign(0.372)	deleterious(0.01)	deleterious(0.524)	superfamily_C2H2 and C2HC zinc fingers
CNTNAP4	85445	genome.wustl.edu	37	16	76389373	76389373	+	Missense_Mutation	SNP	A	A	C	rs72794957		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138994.3	+1	validated	p.N94H	1.000	72	0%	30	23.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
CNTNAP4	85445	genome.wustl.edu	37	16	76481996	76481996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138994.3	+1	validated	p.S184Y	1.000	155	0%	70	21.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
CNTNAP4	85445	genome.wustl.edu	37	16	76486506	76486506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138994.3	+1	validated	p.E318D	0.006	144	0%	103	38.8%	0	-	benign(0.013)	tolerated(0.52)	neutral(0.009)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
CNTNAP4	85445	genome.wustl.edu	37	16	76528873	76528873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138994.3	+1	validated	p.S643L	0.000	167	0%	185	33%	0	-	benign(0)	tolerated(0.87)	neutral(0.001)	superfamily_Concanavalin A-like lectins/glucanases
CNTNAP4	85445	genome.wustl.edu	37	16	76555148	76555148	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138994.3	+1	validated	p.S753*	0.996	345	0%	174	12.1%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
NUDT7	283927	genome.wustl.edu	37	16	77759416	77759416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105663.1	+1	reviewed	p.V42I	0.007	156	0%	202	25.2%	2	50%	benign(0.061)	tolerated(0.18)	neutral(0.060)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase
VAT1L	57687	genome.wustl.edu	37	16	77910270	77910270	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020927.1	+1	provisional	p.I242	1.000	220	0%	120	22.5%	0	-	-	-	-	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-bd
WWOX	51741	genome.wustl.edu	37	16	79245589	79245589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016373.1	+1	reviewed	p.R381S	1.000	51	0%	44	36.4%	19	52.6%	benign(0.014)	tolerated(0.08)	neutral(0.300)	NULL
CENPN	55839	genome.wustl.edu	37	16	81051405	81051405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100625.1	+1	validated	p.S107L	0.153	62	0%	47	25.5%	18	33.3%	possibly_damaging(0.538)	tolerated(0.31)	neutral(0.209)	HMMPfam_CHL4
PKD1L2	114780	genome.wustl.edu	37	16	81180925	81180925	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052892.3	-1	reviewed	p.T1722	0.000	162	0%	170	29.4%	0	-	-	-	-	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81211487	81211487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001076780.1	-1	reviewed	p.L788M	0.984	36	0%	33	39.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PLCG2	5336	genome.wustl.edu	37	16	81888069	81888069	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002661.2	+1	validated	p.E72*	1.000	104	0%	43	32.6%	6	0%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PLCG2	5336	genome.wustl.edu	37	16	81968060	81968060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002661.2	+1	validated	p.K922N	1.000	63	1.6%	39	30.8%	9	0%	possibly_damaging(0.743)	deleterious(0)	deleterious(0.717)	superfamily_PLC-like_Pdiesterase_TIM-brl
PLCG2	5336	genome.wustl.edu	37	16	81971448	81971448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002661.2	+1	validated	p.E1046D	0.925	82	0%	55	27.3%	20	10%	benign(0)	tolerated(1)	-	superfamily_PLC-like_Pdiesterase_TIM-brl
SDR42E1	93517	genome.wustl.edu	37	16	82034450	82034450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145168.2	-1	validated	p.R5I	0.000	136	0%	102	25.5%	0	-	benign(0.156)	deleterious(0.03)	neutral(0.379)	NULL
CDH13	1012	genome.wustl.edu	37	16	83251040	83251040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001257.3	+1	reviewed	p.E192*	1.000	91	0%	40	27.5%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
MLYCD	23417	genome.wustl.edu	37	16	83941822	83941822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012213.2	+1	reviewed	p.T245A	0.762	47	0%	81	18.5%	14	35.7%	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMPfam_MCD
SLC38A8	146167	genome.wustl.edu	37	16	84046626	84046626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080442.1	-1	provisional	p.E398D	0.894	76	0%	111	30.6%	3	66.6%	possibly_damaging(0.946)	tolerated(0.35)	neutral(0.411)	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84208315	84208315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178452.4	+1	reviewed	p.S562Y	0.003	80	0%	164	37.2%	1	0%	possibly_damaging(0.855)	deleterious(0)	deleterious(0.774)	NULL
CRISPLD2	83716	genome.wustl.edu	37	16	84922933	84922933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031476.3	+1	validated	p.Y468C	1.000	73	0%	66	25.8%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
MTHFSD	64779	genome.wustl.edu	37	16	86575809	86575809	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022764.2	-1	validated	p.I150	0.989	52	0%	71	9.9%	11	9%	-	-	-	HMMPfam_5-FTHF_cyc-lig,superfamily_SSF100950
CA5A	763	genome.wustl.edu	37	16	87969977	87969977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001739.1	-1	reviewed	p.S27L	0.000	76	0%	97	34%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
ZNF469	84627	genome.wustl.edu	37	16	88497685	88497685	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127464.1	+1	reviewed	p.P1241	0.001	23	0%	41	31.7%	1	0%	-	-	-	NULL
ZNF469	84627	genome.wustl.edu	37	16	88499959	88499959	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127464.1	+1	reviewed	p.T1999	0.000	32	0%	46	41.3%	0	-	-	-	-	NULL
TRAPPC2L	51693	genome.wustl.edu	37	16	88925126	88925126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016209.3	+1	validated	p.A45T	0.902	49	0%	83	28.9%	164	45.1%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Sedlin_N,superfamily_SNARE-like
ACSF3	197322	genome.wustl.edu	37	16	89167300	89167300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127214.1	+1	validated	p.L71F	0.996	37	0%	56	32.1%	17	23.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_AMP-binding,superfamily_SSF56801
CDH15	1013	genome.wustl.edu	37	16	89261272	89261272	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004933.2	+1	reviewed	p.G718	0.024	32	0%	56	28.6%	0	-	-	-	-	HMMPfam_Cadherin_C
ZNF778	197320	genome.wustl.edu	37	16	89293933	89293933	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182531.2	+1	validated	p.R385*	0.654	141	0%	203	37.4%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANKRD11	29123	genome.wustl.edu	37	16	89351132	89351132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013275.4	-1	validated	p.E606D	0.993	49	0%	59	27.1%	11	36.3%	benign(0.047)	tolerated(0.48)	neutral(0.014)	superfamily_Ankyrin repeat
RPL13	6137	genome.wustl.edu	37	16	89628029	89628029	+	Missense_Mutation	SNP	C	C	A	rs35249649		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000977.2	+1	reviewed	p.S97Y	1.000	36	0%	67	35.8%	5221	42.6%	possibly_damaging(0.515)	deleterious(0)	deleterious(0.618)	HMMPfam_Ribosomal_L13e
SPATA2L	124044	genome.wustl.edu	37	16	89763903	89763903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152339.2	-1	provisional	p.D372N	0.987	11	0%	21	57.1%	29	48.2%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
FANCA	2175	genome.wustl.edu	37	16	89818605	89818605	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000135.2	-1	reviewed	p.N1003H	0.066	65	0%	126	32.5%	27	33.3%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
FANCA	2175	genome.wustl.edu	37	16	89824989	89824989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000135.2	-1	reviewed	p.Q993*	0.985	85	0%	208	30.8%	18	44.4%	-	-	-	NULL
FANCA	2175	genome.wustl.edu	37	16	89857839	89857839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000135.2	-1	reviewed	p.A444V	0.001	35	0%	51	51%	29	68.9%	benign(0)	tolerated(1)	-	NULL
DEF8	54849	genome.wustl.edu	37	16	90015973	90015973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207514.1	+1	validated	p.V34I	0.000	18	0%	40	25%	4	75%	benign(0.126)	-	-	NULL
VPS53	55275	genome.wustl.edu	37	17	526830	526830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128159.1	-1	reviewed	p.N353K	1.000	98	0%	141	27.7%	5	0%	possibly_damaging(0.879)	tolerated(0.37)	neutral(0.362)	HMMPfam_Vps53_N
GEMIN4	50628	genome.wustl.edu	37	17	650908	650908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015721.2	-1	reviewed	p.F125L	0.999	154	0%	211	25.6%	21	38%	possibly_damaging(0.775)	deleterious(0.02)	deleterious(0.671)	NULL
ABR	29	genome.wustl.edu	37	17	915093	915093	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021962.2	-1	reviewed	p.F698	0.964	102	0%	197	31.5%	63	14.2%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
WDR81	124997	genome.wustl.edu	37	17	1630816	1630816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000409644	+1	known	p.L855M	0.994	11	0%	26	30.8%	14	21.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_WD40 repeat-like
RPA1	6117	genome.wustl.edu	37	17	1791985	1791985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002945.3	+1	validated	p.S464Y	1.000	57	0%	69	21.7%	151	41%	benign(0.233)	deleterious(0.01)	neutral(0.429)	HMMPfam_Rep_fac-A_C,superfamily_Nucleic acid-binding proteins
OVCA2	124641	genome.wustl.edu	37	17	1946373	1946373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080822.2	+1	validated	p.K220T	1.000	68	0%	104	38.5%	180	45%	benign(0.26)	tolerated(0.31)	neutral(0.054)	HMMPfam_FSH1,superfamily_SSF53474
OR1A2	26189	genome.wustl.edu	37	17	3100833	3100833	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012352.1	+1	provisional	p.S7	0.011	145	0%	62	25.8%	0	-	-	-	-	superfamily_SSF81321
OR1A2	26189	genome.wustl.edu	37	17	3101472	3101472	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012352.1	+1	provisional	p.V220	0.984	99	0%	68	26.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SPATA22	84690	genome.wustl.edu	37	17	3346480	3346480	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032598.4	-1	validated	p.V296	0.940	88	0%	70	37.1%	0	-	-	-	-	NULL
SPATA22	84690	genome.wustl.edu	37	17	3349810	3349810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032598.4	-1	validated	p.W253L	1.000	175	0%	95	31.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRPV3	162514	genome.wustl.edu	37	17	3458101	3458101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145068.2	-1	reviewed	p.R15I	0.243	85	0%	93	28%	1	0%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	NULL
TRPV1	7442	genome.wustl.edu	37	17	3493236	3493236	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018727.5	-1	reviewed	p.T303	0.973	69	0%	123	36.6%	5	60%	-	-	-	superfamily_Ankyrin repeat
SHPK	23729	genome.wustl.edu	37	17	3527444	3527444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013276.2	-1	reviewed	p.R131Q	1.000	36	0%	54	40.7%	29	44.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
ITGAE	3682	genome.wustl.edu	37	17	3654948	3654948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002208.4	-1	reviewed	p.S630L	0.945	63	0%	136	25.7%	6	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_Int_alpha,superfamily_SSF69318
CAMKK1	84254	genome.wustl.edu	37	17	3773124	3773124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172207.2	-1	reviewed	p.E433K	0.939	227	0%	342	21.6%	1	0%	benign(0.018)	tolerated(0.43)	neutral(0.014)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZZEF1	23140	genome.wustl.edu	37	17	3989047	3989047	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015113.3	-1	validated	p.E855*	1.000	107	0%	65	23.1%	5	0%	-	-	-	NULL
SPNS2	124976	genome.wustl.edu	37	17	4436347	4436347	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001124758.1	+1	provisional	p.P337	0.017	15	0%	40	30%	2	50%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
PELP1	27043	genome.wustl.edu	37	17	4578385	4578385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014389.2	-1	validated	p.E421D	1.000	39	0%	51	35.3%	85	50.5%	possibly_damaging(0.857)	tolerated(0.11)	deleterious(0.603)	NULL
PELP1	27043	genome.wustl.edu	37	17	4578897	4578897	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000301396	-1	known	p.S421	0.000	25	0%	19	47.4%	1	100%	-	-	-	NULL
ZMYND15	84225	genome.wustl.edu	37	17	4645753	4645753	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136046.1	+1	provisional	p.E371*	1.000	106	0.9%	170	27.6%	0	-	-	-	-	NULL
TM4SF5	9032	genome.wustl.edu	37	17	4685827	4685827	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003963.2	+1	reviewed	p.F96	0.009	77	0%	128	33.6%	0	-	-	-	-	HMMPfam_L6_membrane
PLD2	5338	genome.wustl.edu	37	17	4722488	4722488	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002663.3	+1	validated	p.I761	0.995	70	0%	120	32.5%	36	50%	-	-	-	HMMPfam_PLDc,HMMSmart_SM00155,superfamily_Phospholipase D/nuclease
CAMTA2	23125	genome.wustl.edu	37	17	4883297	4883297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015099.3	-1	validated	p.N440K	0.985	14	0%	20	25%	11	36.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
KIF1C	10749	genome.wustl.edu	37	17	4925727	4925727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006612.5	+1	validated	p.R784H	1.000	88	0%	122	38.5%	100	41%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
ZFP3	124961	genome.wustl.edu	37	17	4995476	4995476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153018.2	+1	validated	p.K226T	0.005	130	0%	202	29.2%	2	100%	possibly_damaging(0.799)	tolerated(0.16)	neutral(0.360)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP3	124961	genome.wustl.edu	37	17	4995869	4995869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153018.2	+1	validated	p.R357I	0.489	69	0%	119	33.6%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
USP6	9098	genome.wustl.edu	37	17	5041514	5041514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004505.2	+1	validated	p.L342I	1.000	80	0%	119	32.8%	0	-	unknown(0)	deleterious(0)	-	superfamily_Ypt/Rab-GAP domain of gyp1p
USP6	9098	genome.wustl.edu	37	17	5044782	5044782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004505.2	+1	validated	p.D521Y	1.000	229	0%	325	24.9%	0	-	benign(0.258)	deleterious(0.04)	neutral(0.376)	NULL
USP6	9098	genome.wustl.edu	37	17	5048042	5048042	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004505.2	+1	validated	p.E626*	1.000	208	0%	392	32.1%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP6	9098	genome.wustl.edu	37	17	5048728	5048728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004505.2	+1	validated	p.R674I	1.000	274	0%	370	31.4%	0	-	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP6	9098	genome.wustl.edu	37	17	5058809	5058809	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004505.2	+1	validated	p.R912	1.000	177	0%	129	33.3%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP6	9098	genome.wustl.edu	37	17	5073773	5073773	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004505.2	+1	validated	e27-1	1.000	65	0%	52	30.8%	0	-	-	-	-	-
USP6	9098	genome.wustl.edu	37	17	5073840	5073840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004505.2	+1	validated	p.S1195I	1.000	93	0%	73	17.8%	7	0%	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	HMMPfam_UCH,superfamily_Cysteine proteinases
ZNF594	84622	genome.wustl.edu	37	17	5084871	5084871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000381752	-1	known	p.H106N	0.997	162	0%	218	31.7%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,superfamily_SSF57667
ZNF594	84622	genome.wustl.edu	37	17	5085366	5085366	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032530.1	-1	validated	p.L729R	0.815	243	0%	324	31.2%	10	30%	possibly_damaging(0.718)	tolerated(0.06)	deleterious(0.583)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF594	84622	genome.wustl.edu	37	17	5086691	5086691	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032530.1	-1	validated	p.R287	0.984	114	0%	160	35.6%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF594	84622	genome.wustl.edu	37	17	5086692	5086692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032530.1	-1	validated	p.R287I	0.985	114	0%	159	35.8%	3	33.3%	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RABEP1	9135	genome.wustl.edu	37	17	5250091	5250091	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004703.4	+1	validated	p.E219*	1.000	105	0%	71	28.2%	7	14.2%	-	-	-	NULL
RABEP1	9135	genome.wustl.edu	37	17	5264818	5264818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004703.4	+1	validated	p.D471Y	1.000	85	0%	87	33.3%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rabaptin
RPAIN	84268	genome.wustl.edu	37	17	5331597	5331597	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000405578	+1	known	p.*232C	0.000	109	0%	133	30.1%	7	28.5%	-	-	-	NULL
C1QBP	708	genome.wustl.edu	37	17	5336703	5336703	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001212.3	-1	reviewed	p.I203	1.000	90	0%	117	21.4%	406	38.9%	-	-	-	HMMPfam_MAM33,superfamily_MAM33
NLRP1	22861	genome.wustl.edu	37	17	5462129	5462129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033004.3	-1	reviewed	p.F629L	1.000	96	0%	80	28.7%	9	11.1%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FAM64A	54478	genome.wustl.edu	37	17	6350784	6350784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019013.1	+1	provisional	p.R99K	0.997	41	0%	69	29%	18	44.4%	possibly_damaging(0.942)	tolerated(0.49)	neutral(0.398)	HMMPfam_DUF1466
PITPNM3	83394	genome.wustl.edu	37	17	6381945	6381945	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031220.3	-1	reviewed	p.V233	0.201	85	0%	117	28.2%	9	44.4%	-	-	-	NULL
ALOX12	239	genome.wustl.edu	37	17	6913663	6913663	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000697.2	+1	validated	p.I638S	0.845	77	0%	156	34%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
BCL6B	255877	genome.wustl.edu	37	17	6927918	6927918	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181844.3	+1	validated	p.I200	0.992	50	0%	104	33.7%	2	0%	-	-	-	NULL
CLEC10A	10462	genome.wustl.edu	37	17	6982070	6982070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182906.2	-1	reviewed	p.K21T	0.006	169	0%	175	26.3%	3	0%	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Lectin_N
DLG4	1742	genome.wustl.edu	37	17	7106569	7106569	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001365.3	-1	reviewed	p.I238	0.905	174	0%	314	37.3%	3	33.3%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
DLG4	1742	genome.wustl.edu	37	17	7107541	7107541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001365.3	-1	reviewed	p.D86Y	1.000	218	0%	360	37.2%	2	0%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_MAGUK_N_PEST
CTDNEP1	23399	genome.wustl.edu	37	17	7149424	7149424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143775.1	-1	validated	p.K170N	1.000	55	0%	112	29.5%	306	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NIF,HMMSmart_SM00577,superfamily_HAD-like
YBX2	51087	genome.wustl.edu	37	17	7194415	7194415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015982.3	-1	validated	p.E152D	1.000	290	0%	583	14.2%	2	0%	benign(0.183)	tolerated(0.08)	neutral(0.317)	HMMPfam_CSD,HMMSmart_CSP,superfamily_Nucleic_acid_OB
EIF5A	1984	genome.wustl.edu	37	17	7212941	7212941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143760.1	+1	validated	p.S26L	1.000	156	0%	314	32.5%	965	42.3%	benign(0.429)	deleterious(0)	deleterious(0.584)	NULL
EIF5A	1984	genome.wustl.edu	37	17	7214392	7214392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143760.1	+1	validated	p.P104L	1.000	204	0%	403	33%	381	42.5%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	superfamily_Transl_SH3_like
ACAP1	9744	genome.wustl.edu	37	17	7247264	7247264	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014716.3	+1	validated	p.L220	0.999	100	0%	122	35.2%	17	0%	-	-	-	NULL
SPEM1	374768	genome.wustl.edu	37	17	7324450	7324450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199339.2	+1	provisional	p.E152D	0.000	70	0%	100	40%	1	100%	possibly_damaging(0.568)	tolerated(0.21)	neutral(0.238)	NULL
SPEM1	374768	genome.wustl.edu	37	17	7324552	7324552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199339.2	+1	provisional	p.E186D	0.003	72	0%	114	30.7%	0	-	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
POLR2A	5430	genome.wustl.edu	37	17	7401404	7401404	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000937.3	+1	validated	p.E404*	1.000	90	0%	97	26.8%	69	14.4%	-	-	-	HMMPfam_RNA_pol_Rpb1_2,superfamily_SSF64484
SHBG	6462	genome.wustl.edu	37	17	7535297	7535297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040.3	+1	reviewed	p.E272D	0.010	79	0%	103	34%	0	-	possibly_damaging(0.81)	tolerated(0.09)	deleterious(0.601)	superfamily_Concanavalin A-like lectins/glucanases
SHBG	6462	genome.wustl.edu	37	17	7536639	7536639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040.3	+1	reviewed	p.S393I	0.002	122	0%	179	24%	1	100%	benign(0.053)	deleterious(0.01)	neutral(0.409)	NULL
TP53	7157	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000546.4	-1	reviewed	p.R213*	0.893	190	0%	269	28.6%	58	8.6%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
EFNB3	1949	genome.wustl.edu	37	17	7612879	7612879	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001406.3	+1	reviewed	p.I336	1.000	21	0%	35	28.6%	2	50%	-	-	-	NULL
DNAH2	146754	genome.wustl.edu	37	17	7678148	7678148	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020877.2	+1	validated	p.E1525*	1.000	145	0%	164	25.6%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7689912	7689912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020877.2	+1	validated	p.L2125V	0.013	117	0%	120	20%	0	-	benign(0.015)	tolerated(0.13)	neutral(0.253)	HMMPfam_AAA_5
DNAH2	146754	genome.wustl.edu	37	17	7696394	7696394	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020877.2	+1	validated	p.T2480	0.965	87	0%	100	32%	0	-	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD3	1107	genome.wustl.edu	37	17	7800406	7800406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005271.2	+1	reviewed	p.E630D	1.000	50	0%	68	14.7%	79	18.9%	benign(0.271)	-	-	HMMSmart_SM00298,superfamily_Chromo domain-like
CHD3	1107	genome.wustl.edu	37	17	7803987	7803987	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005271.2	+1	reviewed	p.V1031	1.000	73	0%	100	33%	121	36.3%	-	-	-	HMMPfam_SNF2_N
KCNAB3	9196	genome.wustl.edu	37	17	7828495	7828495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004732.2	-1	reviewed	p.R182Q	0.999	78	0%	112	24.1%	2	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
TRAPPC1	58485	genome.wustl.edu	37	17	7835076	7835076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021210.4	-1	reviewed	p.K24N	1.000	86	0%	175	25.7%	339	33%	benign(0.006)	tolerated(0.48)	neutral(0.011)	HMMPfam_Sybindin,superfamily_SNARE-like
ALOXE3	59344	genome.wustl.edu	37	17	8007504	8007504	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021628.2	-1	reviewed	p.E572*	1.000	109	0%	130	31.5%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
CTC1	80169	genome.wustl.edu	37	17	8135530	8135530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025099.5	-1	validated	p.F692L	0.769	70	0%	68	30.9%	9	44.4%	probably_damaging(0.995)	tolerated(0.4)	deleterious(0.474)	NULL
CTC1	80169	genome.wustl.edu	37	17	8141386	8141386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025099.5	-1	validated	p.L204I	0.926	43	0%	46	17.4%	8	25%	benign(0.085)	tolerated(0.34)	neutral(0.029)	NULL
MYH10	4628	genome.wustl.edu	37	17	8383806	8383806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005964.1	-1	validated	p.R1737W	0.998	57	0%	119	31.9%	106	39.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH10	4628	genome.wustl.edu	37	17	8492406	8492406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005964.1	-1	validated	p.L175I	1.000	188	0%	228	32.9%	18	38.8%	benign(0.045)	deleterious(0)	neutral(0.447)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPDYE4	388333	genome.wustl.edu	37	17	8656753	8656753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128076.1	-1	provisional	p.F180L	0.005	117	0%	119	24.4%	0	-	benign(0.009)	tolerated(0.06)	neutral(0.323)	NULL
STX8	9482	genome.wustl.edu	37	17	9281920	9281920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004853.2	-1	reviewed	p.R198C	0.968	192	0%	104	26.9%	76	43.4%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_SNARE,HMMSmart_SM00397
GLP2R	9340	genome.wustl.edu	37	17	9763289	9763289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004246.1	+1	reviewed	p.L266I	0.640	150	0%	105	31.4%	0	-	possibly_damaging(0.818)	tolerated(0.16)	neutral(0.368)	HMMPfam_7tm_2
RCVRN	5957	genome.wustl.edu	37	17	9801504	9801504	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002903.2	-1	reviewed	p.E171*	1.000	301	0%	383	30.8%	0	-	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
MYH13	8735	genome.wustl.edu	37	17	10219315	10219315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003802.2	-1	validated	p.V1256I	0.883	193	0%	194	28.4%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH13	8735	genome.wustl.edu	37	17	10223705	10223705	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003802.2	-1	validated	p.E1074*	1.000	204	0%	187	26.2%	0	-	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH8	4626	genome.wustl.edu	37	17	10298591	10298591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002472.2	-1	reviewed	p.E1607D	1.000	329	0%	282	30.1%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10307808	10307808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002472.2	-1	reviewed	p.L843I	1.000	285	0%	173	20.8%	0	-	possibly_damaging(0.903)	tolerated(0.09)	deleterious(0.654)	NULL
MYH4	4622	genome.wustl.edu	37	17	10356223	10356223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017533.2	-1	validated	p.K1046N	1.000	456	0%	239	29.7%	0	-	possibly_damaging(0.886)	deleterious(0.02)	deleterious(0.730)	NULL
MYH4	4622	genome.wustl.edu	37	17	10360790	10360790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017533.2	-1	validated	p.S615Y	1.000	221	0%	124	10.5%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10400440	10400440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005963.3	-1	reviewed	p.K1534N	1.000	402	0%	439	31.7%	0	-	unknown(0)	deleterious(0.03)	-	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10400756	10400756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005963.3	-1	reviewed	p.W1460L	1.000	184	0%	185	27.6%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10408721	10408721	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005963.3	-1	reviewed	p.K761T	1.000	181	0%	71	29.6%	0	-	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10411680	10411680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005963.3	-1	reviewed	p.E633K	1.000	145	0%	45	37.8%	0	-	benign(0.017)	tolerated(0.66)	neutral(0.003)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10417437	10417437	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005963.3	-1	reviewed	p.E180*	1.000	162	0%	80	37.5%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10419573	10419573	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005963.3	-1	reviewed	p.L97	0.999	452	0%	172	26.7%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10426478	10426478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100112.1	-1	reviewed	p.L1868I	0.985	170	0%	92	27.2%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10426663	10426663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100112.1	-1	reviewed	p.R1847C	1.000	229	0%	142	33.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10432765	10432765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100112.1	-1	reviewed	p.R1051C	1.000	344	0.3%	202	33.2%	0	-	benign(0.02)	deleterious(0)	neutral(0.446)	NULL
MYH3	4621	genome.wustl.edu	37	17	10537012	10537012	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002470.2	-1	reviewed	p.E1515*	1.000	286	0%	264	31.1%	3	100%	-	-	-	HMMPfam_Myosin_tail_1
SCO1	6341	genome.wustl.edu	37	17	10595213	10595213	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004589.2	-1	reviewed	p.E211*	1.000	175	0%	250	34.8%	32	6.2%	-	-	-	HMMPfam_SCO1-SenC,superfamily_Thiordxn-like_fd
C17orf48	56985	genome.wustl.edu	37	17	10608642	10608642	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020233.4	+1	validated	p.D133E	0.624	121	0%	126	31%	7	42.8%	possibly_damaging(0.85)	tolerated(0.12)	deleterious(0.588)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
PIRT	644139	genome.wustl.edu	37	17	10728935	10728935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101387.1	-1	validated	p.L10I	0.926	52	0%	52	36.5%	0	-	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11535919	11535919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001372.3	+1	reviewed	p.V512I	0.003	153	0%	81	37%	0	-	benign(0.076)	tolerated(0.13)	neutral(0.258)	HMMPfam_DHC_N1
DNAH9	1770	genome.wustl.edu	37	17	11543606	11543606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001372.3	+1	reviewed	p.K602N	1.000	61	0%	41	34.1%	0	-	benign(0.191)	tolerated(0.37)	neutral(0.037)	HMMPfam_DHC_N1
DNAH9	1770	genome.wustl.edu	37	17	11556119	11556119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001372.3	+1	reviewed	p.D799Y	1.000	77	0%	95	34.7%	0	-	benign(0.366)	tolerated(0.13)	neutral(0.369)	NULL
DNAH9	1770	genome.wustl.edu	37	17	11572944	11572944	+	Silent	SNP	C	C	T	rs184072165	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001372.3	+1	reviewed	p.I1062	0.051	121	0%	95	36.8%	0	-	-	-	-	superfamily_Spectrin repeat
DNAH9	1770	genome.wustl.edu	37	17	11631149	11631149	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001372.3	+1	reviewed	p.I1908	1.000	296	0%	222	32.4%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11660942	11660942	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001372.3	+1	reviewed	p.E2310*	1.000	119	0%	107	24.3%	0	-	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11700944	11700944	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001372.3	+1	reviewed	p.S2752R	0.029	123	0%	76	30.3%	0	-	benign(0.053)	tolerated(0.58)	neutral(0.009)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF18	7566	genome.wustl.edu	37	17	11882036	11882036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144680.2	-1	provisional	p.E296D	0.987	14	0%	13	30.8%	16	50%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	NULL
MYOCD	93649	genome.wustl.edu	37	17	12647692	12647694	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153604.2	+1	reviewed	p.Q307in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LOC100128006	100128006	genome.wustl.edu	37	17	12664057	12664057	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_078523.1	-1	model	NULL	0.000	109	0%	58	25.9%	0	-	-	-	-	-
ARHGAP44	9912	genome.wustl.edu	37	17	12859240	12859240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014859.4	+1	validated	p.T398I	1.000	152	0%	164	27.4%	13	84.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ELAC2	60528	genome.wustl.edu	37	17	12896331	12896331	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018127.6	-1	reviewed	p.K762T	0.998	45	0%	79	20.3%	163	11.6%	probably_damaging(0.957)	tolerated(0.09)	deleterious(0.697)	NULL
ZNF286A	57335	genome.wustl.edu	37	17	15619733	15619733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130842.1	+1	validated	p.K232T	0.052	139	0%	91	23.1%	4	50%	benign(0)	tolerated(0.17)	neutral(0.059)	superfamily_SSF57667
NCOR1	9611	genome.wustl.edu	37	17	15974839	15974839	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006311.2	-1	reviewed	p.E1346*	1.000	262	0%	129	34.1%	1	0%	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	16001704	16001704	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006311.2	-1	reviewed	p.R933*	1.000	128	0%	236	30.5%	15	26.6%	-	-	-	NULL
NCOR1	9611	genome.wustl.edu	37	17	16097850	16097850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006311.2	-1	reviewed	p.A12T	1.000	343	0%	291	22%	8	50%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
ZNF287	57336	genome.wustl.edu	37	17	16455789	16455789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020653.2	-1	validated	p.R556K	1.000	162	0%	123	35.8%	1	0%	probably_damaging(0.976)	tolerated(0.1)	deleterious(0.704)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCDC144A	9720	genome.wustl.edu	37	17	16608617	16608617	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014695.1	+1	provisional	p.E190*	0.011	264	0%	209	16.3%	0	-	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16612557	16612557	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014695.1	+1	provisional	p.L396V	0.086	264	0%	133	27.8%	0	-	possibly_damaging(0.69)	deleterious(0)	deleterious(0.692)	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16638715	16638715	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014695.1	+1	provisional	p.Q1044*	0.998	69	0%	77	33.8%	0	-	-	-	-	NULL
CCDC144A	9720	genome.wustl.edu	37	17	16664997	16664997	+	Missense_Mutation	SNP	G	G	A	rs11533759		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014695.1	+1	provisional	p.E1211K	0.005	186	0%	123	15.4%	0	-	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
KRT17P1	147228	genome.wustl.edu	37	17	16744252	16744252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000399211	-1	known	p.K428R	0.995	16	0%	30	26.7%	0	-	benign(0.008)	tolerated(0.1)	neutral(0.286)	NULL
MPRIP	23164	genome.wustl.edu	37	17	17046898	17046899	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015134.2	+1	validated	p.L356fs	1.000:0.916	-	-	-	-	-	-	-	-	-	NULL
MPRIP	23164	genome.wustl.edu	37	17	17053464	17053464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015134.2	+1	validated	p.D428N	1.000	58	0%	87	31%	65	49.2%	probably_damaging(0.957)	tolerated(0.12)	deleterious(0.661)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
TOM1L2	146691	genome.wustl.edu	37	17	17764809	17764809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082968.1	-1	validated	p.R420Q	1.000	113	0%	101	36.6%	12	33.3%	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	NULL
LRRC48	83450	genome.wustl.edu	37	17	17909551	17909551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130090.1	+1	validated	p.E396K	0.994	131	0%	268	34%	7	28.5%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
MYO15A	51168	genome.wustl.edu	37	17	18063017	18063017	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000359910	+1	known	p.R31S	0.000	68	0%	154	33.8%	0	-	-	-	-	HMMSmart_SM00139
MYO15A	51168	genome.wustl.edu	37	17	18064644	18064644	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016239.3	+1	reviewed	p.R3134*	0.997	61	0%	89	22.5%	0	-	-	-	-	HMMPfam_MyTH4,HMMSmart_SM00139
FLII	2314	genome.wustl.edu	37	17	18151272	18151272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002018.2	-1	reviewed	p.K756E	1.000	78	0%	122	23.8%	156	30.1%	benign(0.009)	tolerated(0.48)	neutral(0.011)	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753
SMCR8	140775	genome.wustl.edu	37	17	18219626	18219626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144775.2	+1	validated	p.E175K	0.976	50	0%	89	33.7%	3	33.3%	benign(0.242)	tolerated(0.24)	neutral(0.062)	NULL
SMCR8	140775	genome.wustl.edu	37	17	18219704	18219704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144775.2	+1	validated	p.D201Y	1.000	56	0%	86	29.1%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SMCR8	140775	genome.wustl.edu	37	17	18225984	18225984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144775.2	+1	validated	p.R805H	1.000	78	0%	83	43.4%	18	27.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EVPLL	645027	genome.wustl.edu	37	17	18284767	18284767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145127.1	+1	validated	p.K50N	1.000	49	0%	93	31.2%	0	-	probably_damaging(0.988)	tolerated(0.21)	deleterious(0.481)	superfamily_Spectrin
LOC645139	645139	genome.wustl.edu	37	17	18554301	18554301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_928169.3	+1	model	p.L305I	1.000	299	0%	451	33%	63	0%	-	-	-	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
ZNF286B	729288	genome.wustl.edu	37	17	18565527	18565527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145045.1	-1	validated	p.R431I	1.000	209	0%	203	32%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF286B	729288	genome.wustl.edu	37	17	18566506	18566506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145045.1	-1	validated	p.N105H	0.780	157	0%	105	26.7%	1	100%	-	-	-	NULL
FBXW10	10517	genome.wustl.edu	37	17	18673292	18673292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031456.3	+1	validated	p.D634Y	1.000	177	0%	166	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAPK7	5598	genome.wustl.edu	37	17	19285243	19285243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002749.3	+1	reviewed	p.R543W	0.999	34	2.9%	81	32.1%	22	45.4%	unknown(0)	deleterious(0.03)	-	NULL
RNF112	7732	genome.wustl.edu	37	17	19317411	19317411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007148.4	+1	reviewed	p.L277I	0.998	101	0%	187	10.2%	1	0%	-	-	-	HMMPfam_GBP,superfamily_SSF52540
ALDH3A1	218	genome.wustl.edu	37	17	19644502	19644502	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000691.4	-1	reviewed	p.F237L	0.994	98	0%	133	15%	7	14.2%	probably_damaging(0.995)	tolerated(0.25)	deleterious(0.494)	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,superfamily_ALDH-like
SPECC1	92521	genome.wustl.edu	37	17	20107938	20107938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033553.1	+1	validated	p.K192N	1.000	84	0%	53	30.2%	29	37.9%	possibly_damaging(0.895)	deleterious(0.04)	deleterious(0.702)	NULL
SPECC1	92521	genome.wustl.edu	37	17	20109052	20109052	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033553.1	+1	validated	p.K564Q	0.998	65	0%	63	33.3%	49	48.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CCDC144C	348254	genome.wustl.edu	37	17	20269128	20269128	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000425519	+1	known	p.R863*	0.997	73	0%	50	34%	3	100%	-	-	-	NULL
DHRS7B	25979	genome.wustl.edu	37	17	21081587	21081587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015510.3	+1	validated	p.L81I	1.000	107	0%	121	27.3%	46	63%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_adh_short,superfamily_NAD(P)-bd
TMEM11	8834	genome.wustl.edu	37	17	21101654	21101654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003876.2	-1	validated	p.E188K	1.000	109	0%	151	35.1%	84	29.7%	benign(0.002)	tolerated(0.37)	neutral(0.019)	NULL
C17orf51	339263	genome.wustl.edu	37	17	21438714	21438714	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001113434.3	-1	validated	p.I171	0.001	156	0%	88	33%	1	100%	-	-	-	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26961962	26961962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014680.2	-1	validated	p.F881L	1.000	136	0%	118	29.7%	25	36%	probably_damaging(0.971)	tolerated(1)	neutral(0.413)	NULL
MYO18A	399687	genome.wustl.edu	37	17	27425883	27425883	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_078471.3	-1	validated	p.I1247	0.105	248	0%	345	31.9%	14	35.7%	-	-	-	NULL
GIT1	28964	genome.wustl.edu	37	17	27908956	27908956	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085454.1	-1	validated	p.I204	0.934	30	0%	53	17%	60	43.3%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
GIT1	28964	genome.wustl.edu	37	17	27909727	27909727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001085454.1	-1	validated	p.D132Y	1.000	80	0%	124	25.8%	50	36%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ANK,superfamily_ANK
SSH2	85464	genome.wustl.edu	37	17	27958422	27958422	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033389.2	-1	reviewed	p.E1237*	1.000	117	0%	96	11.5%	8	12.5%	-	-	-	NULL
EFCAB5	374786	genome.wustl.edu	37	17	28400722	28400722	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026738.1	+1	validated	NULL	0.001	87	0%	79	25.3%	0	-	-	-	-	-
EFCAB5	374786	genome.wustl.edu	37	17	28417602	28417602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198529.3	+1	validated	p.D1283Y	1.000	156	0%	106	34%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CPD	1362	genome.wustl.edu	37	17	28788917	28788917	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001304.3	+1	reviewed	p.F1218C	0.997	77	0%	43	25.6%	24	41.6%	benign(0.012)	tolerated(0.08)	neutral(0.300)	superfamily_CarboxypepD_reg
ENSG00000247185	0	genome.wustl.edu	37	17	29096748	29096749	+	RNA	INS	-	-	AT	rs59722699	byCluster;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000499895	+1	known	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
ATAD5	79915	genome.wustl.edu	37	17	29221045	29221045	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024857.3	+1	provisional	p.S1725*	1.000	113	0%	79	29.1%	5	60%	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29557326	29557326	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042492.2	+1	reviewed	p.T1013	0.085	63	0%	66	36.4%	10	30%	-	-	-	NULL
EVI2A	2123	genome.wustl.edu	37	17	29645623	29645623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001003927.2	-1	validated	p.I160L	0.683	217	0%	101	43.6%	9	0%	benign(0.14)	deleterious(0.05)	neutral(0.357)	HMMPfam_EVI2A
NF1	4763	genome.wustl.edu	37	17	29653000	29653000	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042492.2	+1	reviewed	p.F1666	1.000	129	0%	68	17.6%	8	37.5%	-	-	-	HMMSmart_SM00516
SUZ12	23512	genome.wustl.edu	37	17	30320885	30320885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015355.2	+1	reviewed	p.F432C	1.000	67	0%	78	35.9%	15	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUZ12	23512	genome.wustl.edu	37	17	30325975	30325975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015355.2	+1	reviewed	p.D725Y	1.000	17	0%	15	26.7%	15	13.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LRRC37B	114659	genome.wustl.edu	37	17	30348938	30348938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052888.2	+1	validated	p.S258Y	0.042	41	0%	35	37.1%	1	100%	probably_damaging(0.983)	tolerated(0.38)	neutral(0.447)	NULL
LRRC37B	114659	genome.wustl.edu	37	17	30349429	30349429	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052888.2	+1	validated	p.E422*	0.016	90	0%	121	18.2%	8	12.5%	-	-	-	NULL
RHBDL3	162494	genome.wustl.edu	37	17	30625188	30625188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138328.2	+1	validated	p.R249Q	1.000	121	0%	130	46.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rhomboid
MYO1D	4642	genome.wustl.edu	37	17	30965828	30965828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015194.1	-1	provisional	p.D874G	1.000	161	0%	65	27.7%	55	49%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Myosin_TH1
MYO1D	4642	genome.wustl.edu	37	17	31072280	31072280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015194.1	-1	provisional	p.D521G	1.000	65	0%	52	26.9%	17	58.8%	possibly_damaging(0.639)	deleterious(0)	deleterious(0.668)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1D	4642	genome.wustl.edu	37	17	31099817	31099817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015194.1	-1	provisional	p.S203Y	1.000	111	0%	104	33.7%	9	55.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPACA3	124912	genome.wustl.edu	37	17	31322445	31322445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173847.3	+1	provisional	p.V18A	0.003	59	0%	59	27.1%	0	-	benign(0.235)	deleterious(0)	neutral(0.468)	NULL
ENSG00000226049	0	genome.wustl.edu	37	17	32364880	32364880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430493	-1	known	p.E613D	1.000	202	0%	325	36%	14	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000226049	0	genome.wustl.edu	37	17	32365195	32365195	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430493	-1	known	p.I508	1.000	271	0%	466	28.5%	10	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000226049	0	genome.wustl.edu	37	17	32365623	32365623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430493	-1	known	p.N366H	1.000	215	0%	371	32.6%	0	-	-	-	-	NULL
CCL7	6354	genome.wustl.edu	37	17	32598134	32598134	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000394627	+1	known	p.Q43	0.000	45	0%	26	50%	0	-	-	-	-	NULL
CCL7	6354	genome.wustl.edu	37	17	32598750	32598750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006273.2	+1	reviewed	p.D77Y	0.958	83	0%	28	21.4%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
C17orf102	400591	genome.wustl.edu	37	17	32906173	32906173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207454.2	-1	validated	p.D43Y	0.000	12	0%	22	27.3%	0	-	benign(0.127)	-	-	NULL
TMEM132E	124842	genome.wustl.edu	37	17	32959782	32959782	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207313.1	+1	provisional	p.N424	1.000	73	0%	141	32.6%	1	0%	-	-	-	NULL
TMEM132E	124842	genome.wustl.edu	37	17	32964531	32964531	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207313.1	+1	provisional	p.G745	0.944	13	0%	19	26.3%	0	-	-	-	-	NULL
LIG3	3980	genome.wustl.edu	37	17	33316592	33316592	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013975.2	+1	reviewed	p.R267*	1.000	91	0%	64	45.3%	13	7.6%	-	-	-	HMMPfam_DNA_ligase_A_N
RAD51D	5892	genome.wustl.edu	37	17	33443989	33443989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142571.1	-1	reviewed	p.S71L	0.000	53	0%	139	33.1%	0	-	unknown(0)	-	-	NULL
UNC45B	146862	genome.wustl.edu	37	17	33477072	33477072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173167.2	+1	validated	p.D71N	1.000	73	0%	159	25.8%	0	-	benign(0.409)	deleterious(0.02)	deleterious(0.515)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SLFN11	91607	genome.wustl.edu	37	17	33679522	33679522	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001104587.1	-1	validated	p.S853	0.808	226	0%	218	29.4%	51	31.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33679730	33679730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001104587.1	-1	validated	p.T784N	0.000	131	0%	103	32%	32	31.2%	possibly_damaging(0.914)	tolerated(0.44)	neutral(0.379)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN13	146857	genome.wustl.edu	37	17	33771971	33771971	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144682.5	-1	validated	p.G243	0.905	161	0%	199	23.6%	1	0%	-	-	-	HMMPfam_AAA_4
SLFN12L	100506736	genome.wustl.edu	37	17	33802003	33802003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145027.1	-1	validated	p.F598S	0.040	196	0%	169	32.5%	0	-	unknown(0)	deleterious(0)	-	NULL
SLFN12L	100506736	genome.wustl.edu	37	17	33849316	33849316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145027.1	-1	validated	p.F28C	0.005	116	0%	98	37.8%	0	-	unknown(0)	deleterious(0.03)	-	NULL
SLFN14	342618	genome.wustl.edu	37	17	33884628	33884628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129820.1	-1	provisional	p.E152K	0.982	81	0%	44	36.4%	0	-	probably_damaging(0.995)	tolerated(0.84)	neutral(0.458)	NULL
SLFN14	342618	genome.wustl.edu	37	17	33884959	33884959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129820.1	-1	provisional	p.E41D	0.994	105	0%	100	29%	0	-	probably_damaging(0.955)	tolerated(0.1)	deleterious(0.685)	NULL
PEX12	5193	genome.wustl.edu	37	17	33904198	33904198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000286.2	-1	reviewed	p.R180Q	0.057	108	0%	92	39.1%	6	66.6%	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_Pex2_Pex12
GAS2L2	246176	genome.wustl.edu	37	17	34072827	34072827	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139285.2	-1	validated	p.Q563	0.050	31	0%	66	24.2%	0	-	-	-	-	NULL
GAS2L2	246176	genome.wustl.edu	37	17	34074179	34074179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139285.2	-1	validated	p.S314L	1.000	103	0%	224	33.9%	0	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
RDM1	201299	genome.wustl.edu	37	17	34249574	34249574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001034836.1	-1	reviewed	p.T225I	0.977	133	0%	143	30.1%	2	50%	possibly_damaging(0.815)	tolerated(0.05)	deleterious(0.653)	superfamily_SSF54768
CCL14	6358	genome.wustl.edu	37	17	34310858	34310858	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032962.4	-1	reviewed	p.I103	0.010	121	0%	92	32.6%	4	0%	-	-	-	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8
MYO19	80179	genome.wustl.edu	37	17	34869537	34869537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025109.5	-1	validated	p.L251P	0.996	171	0%	156	37.8%	27	48.1%	possibly_damaging(0.455)	tolerated(0.18)	neutral(0.205)	HMMSmart_MYSc,superfamily_SSF52540
GGNBP2	79893	genome.wustl.edu	37	17	34935763	34935763	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024835.2	+1	validated	p.R312*	1.000	123	0%	175	18.9%	48	16.6%	-	-	-	NULL
ACACA	31	genome.wustl.edu	37	17	35468547	35468547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198834.1	-1	reviewed	p.E2162*	1.000	167	0%	108	21.3%	21	19%	-	-	-	HMMPfam_Carboxyl_trans,superfamily_SSF52096
ACACA	31	genome.wustl.edu	37	17	35518742	35518742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198834.1	-1	reviewed	p.R1768C	1.000	109	0%	79	36.7%	17	17.6%	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	HMMPfam_Carboxyl_trans,superfamily_SSF52096
C17orf78	284099	genome.wustl.edu	37	17	35736191	35736191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173625.3	+1	validated	p.P88S	0.000	139	0%	87	37.9%	1	0%	benign(0.235)	tolerated(1)	neutral(0.024)	NULL
SYNRG	11276	genome.wustl.edu	37	17	35945533	35945533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007247.4	-1	reviewed	p.R126Q	1.000	147	0%	69	21.7%	8	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DDX52	11056	genome.wustl.edu	37	17	35981514	35981514	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007010.2	-1	validated	p.E427*	1.000	185	0%	141	31.9%	12	8.3%	-	-	-	HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX52	11056	genome.wustl.edu	37	17	35986122	35986122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007010.2	-1	validated	p.E319*	1.000	80	0%	70	35.7%	16	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX52	11056	genome.wustl.edu	37	17	35993407	35993407	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007010.2	-1	validated	p.S110A	0.985	208	0%	153	36.6%	2	0%	possibly_damaging(0.601)	deleterious(0)	deleterious(0.652)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HNF1B	6928	genome.wustl.edu	37	17	36099459	36099459	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000458.2	-1	reviewed	p.Y172	1.000	164	0%	233	30.9%	13	0%	-	-	-	HMMPfam_HNF-1_N,superfamily_lambda repressor-like DNA-binding domains
GPR179	440435	genome.wustl.edu	37	17	36483289	36483289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004334.2	-1	validated	p.K2055E	0.000	148	0%	202	32.7%	0	-	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
GPR179	440435	genome.wustl.edu	37	17	36484015	36484015	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004334.2	-1	validated	p.E1813*	0.073	118	0%	200	31%	0	-	-	-	-	NULL
GPR179	440435	genome.wustl.edu	37	17	36484516	36484516	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004334.2	-1	validated	p.E1646*	0.982	141	0%	199	31.7%	0	-	-	-	-	NULL
GPR179	440435	genome.wustl.edu	37	17	36486588	36486588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004334.2	-1	validated	p.S955Y	0.780	72	0%	65	29.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARHGAP23	57636	genome.wustl.edu	37	17	36625474	36625474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020876.1	+1	provisional	p.L486M	0.996	101	0%	264	11.7%	24	12.5%	benign(0.046)	tolerated(0.23)	neutral(0.044)	NULL
PSMB3	5691	genome.wustl.edu	37	17	36916808	36916808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002795.2	+1	reviewed	p.T141A	1.000	92	0%	109	26.6%	524	34.7%	benign(0.425)	deleterious(0)	deleterious(0.583)	HMMPfam_Proteasome,superfamily_SSF56235
FLJ43826	342666	genome.wustl.edu	37	17	37188614	37188614	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_040620.2	+1	model	NULL	0.000	16	0%	20	35%	0	-	-	-	-	-
CDK12	51755	genome.wustl.edu	37	17	37657642	37657642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016507.2	+1	validated	p.K853N	1.000	210	0%	204	33.3%	14	35.7%	unknown(0)	tolerated(0.16)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ERBB2	2064	genome.wustl.edu	37	17	37866082	37866082	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004448.2	+1	reviewed	p.P197	0.000	137	0%	256	35.9%	48	45.8%	-	-	-	HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_L domain-like
IKZF3	22806	genome.wustl.edu	37	17	37948938	37948938	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012481.3	-1	reviewed	p.R138*	1.000	147	0%	60	35%	3	0%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
IKZF3	22806	genome.wustl.edu	37	17	37949093	37949093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012481.3	-1	reviewed	p.P86H	1.000	191	0%	122	30.3%	0	-	possibly_damaging(0.925)	deleterious(0.05)	deleterious(0.719)	NULL
GSDMA	284110	genome.wustl.edu	37	17	38133129	38133129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178171.4	+1	validated	p.P386S	0.051	183	0%	263	33.8%	0	-	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	HMMPfam_Gasdermin
MED24	9862	genome.wustl.edu	37	17	38185182	38185182	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014815.3	-1	reviewed	p.L436	1.000	62	0%	89	36%	81	49.3%	-	-	-	NULL
THRA	7067	genome.wustl.edu	37	17	38244633	38244633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003250.4	+1	reviewed	p.K288E	1.000	64	0%	71	29.6%	101	46.5%	possibly_damaging(0.462)	tolerated(0.15)	neutral(0.392)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
MSL1	339287	genome.wustl.edu	37	17	38289820	38289820	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012241.1	+1	validated	p.I267M	1.000	92	0%	94	26.6%	33	39.3%	probably_damaging(0.965)	tolerated(0.32)	neutral(0.431)	NULL
RAPGEFL1	51195	genome.wustl.edu	37	17	38346727	38346727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016339.3	+1	validated	p.A180T	1.000	64	0%	109	29.4%	8	0%	benign(0)	tolerated(0.89)	-	superfamily_Ras_GEF
TOP2A	7153	genome.wustl.edu	37	17	38555366	38555366	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001067.2	-1	reviewed	p.E1072*	1.000	289	0%	110	19.1%	17	0%	-	-	-	HMMPfam_DNA_topoisoIV,HMMSmart_SM00434,superfamily_Type II DNA topoisomerase
TOP2A	7153	genome.wustl.edu	37	17	38563154	38563154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001067.2	-1	reviewed	p.F556C	1.000	92	0%	99	38.4%	24	16.6%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00433,superfamily_Type II DNA topoisomerase
TOP2A	7153	genome.wustl.edu	37	17	38572677	38572677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001067.2	-1	reviewed	p.L89I	1.000	119	0%	187	27.3%	16	62.5%	possibly_damaging(0.872)	deleterious(0)	deleterious(0.784)	HMMSmart_SM00433,HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
KRT222	125113	genome.wustl.edu	37	17	38818179	38818179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152349.2	-1	validated	p.L72I	1.000	201	0%	147	12.2%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_Filament
KRT24	192666	genome.wustl.edu	37	17	38859518	38859518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019016.2	-1	reviewed	p.T143N	1.000	217	0%	191	34%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT26	353288	genome.wustl.edu	37	17	38925198	38925198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181539.4	-1	reviewed	p.L374I	0.335	126	0%	87	9.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT28	162605	genome.wustl.edu	37	17	38956037	38956037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181535.3	-1	reviewed	p.G37S	0.201	52	0%	67	23.9%	0	-	benign(0.001)	tolerated(0.78)	neutral(0.001)	NULL
KRT10	3858	genome.wustl.edu	37	17	38976361	38976361	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000421.3	-1	reviewed	p.I365	1.000	157	0%	248	32.7%	0	-	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
TMEM99	147184	genome.wustl.edu	37	17	38990930	38990930	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145274.2	+1	validated	p.V54	0.001	357	0.3%	250	21.2%	25	24%	-	-	-	NULL
KRT20	54474	genome.wustl.edu	37	17	39034451	39034451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019010.1	-1	reviewed	p.R362L	0.678	283	0%	168	29.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Filament
KRT23	25984	genome.wustl.edu	37	17	39084857	39084857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000377763	-1	known	p.K24R	0.358	119	0%	88	30.7%	22	63.6%	-	-	-	NULL
KRT40	125115	genome.wustl.edu	37	17	39137066	39137066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182497.3	-1	reviewed	p.E316K	1.000	85	0%	66	34.8%	0	-	possibly_damaging(0.798)	deleterious(0.01)	deleterious(0.706)	HMMPfam_Filament
KRTAP4-9	100132386	genome.wustl.edu	37	17	39262372	39262372	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343553.1	+1	model	p.S238*	0.000	93	0%	143	34.3%	0	-	-	-	-	NULL
KRTAP4-4	84616	genome.wustl.edu	37	17	39316647	39316647	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032524.1	-1	reviewed	p.T99	0.034	50	0%	110	24.5%	1	0%	-	-	-	HMMPfam_Keratin_B2
KRT33A	3883	genome.wustl.edu	37	17	39506866	39506866	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004138.2	-1	reviewed	p.F52V	1.000	141	0%	171	33.9%	0	-	benign(0.196)	tolerated(0.09)	neutral(0.315)	NULL
KRT37	8688	genome.wustl.edu	37	17	39580504	39580504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003770.4	-1	reviewed	p.I91T	0.000	89	0%	83	27.7%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
KRT38	8687	genome.wustl.edu	37	17	39595528	39595528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006771.3	-1	reviewed	p.A220V	0.005	52	0%	62	14.5%	0	-	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_Filament
KRT32	3882	genome.wustl.edu	37	17	39620650	39620650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002278.3	-1	reviewed	p.E252K	1.000	69	0%	79	31.6%	0	-	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	HMMPfam_Filament
KRT9	3857	genome.wustl.edu	37	17	39726144	39726144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000226.3	-1	reviewed	p.E283D	0.922	37	0%	67	22.4%	0	-	possibly_damaging(0.472)	deleterious(0.05)	deleterious(0.501)	HMMPfam_Filament
KRT9	3857	genome.wustl.edu	37	17	39727648	39727648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000226.3	-1	reviewed	p.K199N	0.068	112	0%	153	24.2%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Filament
JUP	3728	genome.wustl.edu	37	17	39919446	39919446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002230.2	-1	reviewed	p.V429A	1.000	106	0%	123	35%	215	42.7%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
KLHL11	55175	genome.wustl.edu	37	17	40010662	40010662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018143.1	-1	provisional	p.S486L	1.000	109	0%	69	37.7%	8	37.5%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KAT2A	2648	genome.wustl.edu	37	17	40269466	40269466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021078.2	-1	validated	p.V526A	1.000	10	0%	27	25.9%	109	37.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Acyl-CoA N-acyltransferases (Nat)
STAT3	6774	genome.wustl.edu	37	17	40475322	40475322	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139276.2	-1	reviewed	p.I568	1.000	123	0%	106	30.2%	113	38%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
FAM134C	162427	genome.wustl.edu	37	17	40744161	40744161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178126.3	-1	validated	p.L87I	0.995	213	0%	194	35.6%	11	45.4%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
CNTNAP1	8506	genome.wustl.edu	37	17	40838135	40838135	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003632.2	+1	reviewed	p.F292	0.654	147	0%	223	32.3%	1	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CNTD1	124817	genome.wustl.edu	37	17	40951216	40951216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173478.2	+1	validated	p.S44L	0.001	24	0%	55	36.4%	0	-	benign(0.032)	tolerated(0.23)	neutral(0.043)	superfamily_Cyclin-like
BECN1	8678	genome.wustl.edu	37	17	40963698	40963698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003766.3	-1	validated	p.E387K	1.000	127	0%	115	23.5%	133	43.6%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_APG6
AOC2	314	genome.wustl.edu	37	17	41002212	41002212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_009590.2	+1	reviewed	p.F706L	1.000	156	0%	204	36.3%	8	50%	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
G6PC	2538	genome.wustl.edu	37	17	41062990	41062990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000151.2	+1	reviewed	p.K207N	0.997	80	0%	69	43.5%	0	-	benign(0.009)	tolerated(0.1)	neutral(0.287)	NULL
BRCA1	672	genome.wustl.edu	37	17	41201212	41201212	+	Splice_Site	SNP	C	C	A	rs80358126		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007294.3	-1	reviewed	e20-1	1.000	80	0%	83	21.7%	0	-	-	-	-	-
BRCA1	672	genome.wustl.edu	37	17	41226451	41226451	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007294.3	-1	reviewed	p.S1524	0.349	157	0%	100	29%	8	12.5%	-	-	-	NULL
BRCA1	672	genome.wustl.edu	37	17	41243927	41243927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007294.3	-1	reviewed	p.K1207N	0.733	107	0%	54	40.7%	3	100%	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
NBR1	4077	genome.wustl.edu	37	17	41345171	41345171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005899.3	+1	reviewed	p.E378D	1.000	122	0%	88	20.5%	54	31.4%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
NBR1	4077	genome.wustl.edu	37	17	41362052	41362052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005899.3	+1	reviewed	p.L954I	1.000	63	0%	95	32.6%	70	44.2%	possibly_damaging(0.484)	tolerated(0.37)	neutral(0.179)	NULL
MPP3	4356	genome.wustl.edu	37	17	41888554	41888554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001932.3	-1	reviewed	p.K425N	1.000	163	0%	138	36.2%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD300LG	146894	genome.wustl.edu	37	17	41926087	41926087	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145273.3	+1	validated	p.E69*	0.000	80	0%	139	31.7%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
C17orf53	78995	genome.wustl.edu	37	17	42225700	42225700	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024032.3	+1	validated	p.G177*	0.088	100	0%	104	25%	6	16.6%	-	-	-	NULL
ENSG00000251119	0	genome.wustl.edu	37	17	42265281	42265281	+	RNA	SNP	C	C	A	rs181352974	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000509949	-1	novel	NULL	0.000	60	0%	94	34%	12	33.3%	-	-	-	-
TMUB2	79089	genome.wustl.edu	37	17	42266532	42266532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001076674.1	+1	validated	p.D60Y	1.000	121	0%	188	36.7%	70	37.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITGA2B	3674	genome.wustl.edu	37	17	42461928	42461928	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000419.3	-1	reviewed	p.F275	1.000	56	0%	79	34.2%	2	0%	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
GPATCH8	23131	genome.wustl.edu	37	17	42476223	42476223	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002909.1	-1	validated	p.R1074	0.707	254	0%	269	29%	14	28.5%	-	-	-	NULL
FZD2	2535	genome.wustl.edu	37	17	42635326	42635326	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001466.2	+1	reviewed	p.F90	1.000	36	0%	92	26.1%	22	36.3%	-	-	-	superfamily_Frizzled_Cys-rich,HMMPfam_Fz,HMMSmart_FRI
C17orf104	284071	genome.wustl.edu	37	17	42742808	42742808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145080.2	+1	validated	p.S139Y	1.000	92	0%	115	26.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
C17orf104	284071	genome.wustl.edu	37	17	42744068	42744068	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145080.2	+1	validated	p.Y263*	1.000	54	0%	54	29.6%	0	-	-	-	-	NULL
C17orf104	284071	genome.wustl.edu	37	17	42744232	42744232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145080.2	+1	validated	p.R318K	1.000	35	0%	37	37.8%	0	-	possibly_damaging(0.631)	deleterious(0)	deleterious(0.665)	NULL
EFTUD2	9343	genome.wustl.edu	37	17	42971860	42971860	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004247.3	-1	validated	p.G10	0.991	137	0%	170	28.8%	43	39.5%	-	-	-	NULL
ENSG00000247075	0	genome.wustl.edu	37	17	43003324	43003324	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000499010	+1	novel	NULL	0.000	51	0%	57	43.9%	49	53%	-	-	-	-
SPPL2C	162540	genome.wustl.edu	37	17	43923358	43923358	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175882.2	+1	validated	p.F362	0.109	92	0%	146	35.6%	0	-	-	-	-	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
MAPT	4137	genome.wustl.edu	37	17	44067416	44067416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123066.3	+1	validated	p.S452Y	1.000	146	0%	174	34.5%	0	-	possibly_damaging(0.66)	deleterious(0.01)	deleterious(0.639)	NULL
LRRC37A2	474170	genome.wustl.edu	37	17	44626700	44626700	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006607.2	+1	validated	p.E1399*	0.002	50	0%	25	40%	4	75%	-	-	-	NULL
LOC644397	644397	genome.wustl.edu	37	17	45102050	45102050	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_042323.2	+1	model	NULL	1.000	230	0%	169	14.8%	0	-	unknown(0)	tolerated(0.72)	-	-
CDC27	996	genome.wustl.edu	37	17	45206816	45206816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114091.1	-1	reviewed	p.K707N	1.000	217	0%	127	28.3%	18	50%	benign(0.392)	tolerated(0.05)	deleterious(0.471)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
CDC27	996	genome.wustl.edu	37	17	45247390	45247390	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001114091.1	-1	reviewed	p.Q90H	1.000	90	0%	70	30%	21	47.6%	benign(0.001)	tolerated(0.17)	neutral(0.059)	superfamily_TPR-like
ITGB3	3690	genome.wustl.edu	37	17	45384951	45384951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000212.2	+1	reviewed	p.R750Q	1.000	70	0%	51	19.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_b_cyt
C17orf57	124989	genome.wustl.edu	37	17	45412602	45412602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152347.3	+1	provisional	p.S24Y	0.129	142	0%	143	28%	0	-	possibly_damaging(0.449)	-	-	NULL
C17orf57	124989	genome.wustl.edu	37	17	45447844	45447844	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152347.3	+1	provisional	p.N283H	0.270	341	0%	310	35.2%	0	-	possibly_damaging(0.531)	tolerated(0.06)	deleterious(0.502)	superfamily_EF-hand
C17orf57	124989	genome.wustl.edu	37	17	45490161	45490161	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152347.3	+1	provisional	p.I767	0.892	151	0%	202	29.2%	0	-	-	-	-	superfamily_EF-hand
OSBPL7	114881	genome.wustl.edu	37	17	45893498	45893498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145798.2	-1	reviewed	p.S365Y	1.000	48	0%	84	31%	18	61.1%	possibly_damaging(0.885)	tolerated(0.1)	deleterious(0.632)	NULL
SCRN2	90507	genome.wustl.edu	37	17	45916869	45916869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138355.3	-1	validated	p.R166H	1.000	34	0%	53	49.1%	51	41.1%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
TTLL6	284076	genome.wustl.edu	37	17	46847272	46847272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130918.1	-1	validated	p.S743Y	0.000	259	0%	160	34.4%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
TTLL6	284076	genome.wustl.edu	37	17	46865257	46865257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130918.1	-1	validated	p.S502L	0.069	212	0%	155	36.1%	0	-	benign(0.005)	tolerated(0.4)	neutral(0.016)	NULL
TTLL6	284076	genome.wustl.edu	37	17	46882180	46882180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130918.1	-1	validated	p.L93I	0.001	187	0%	207	33.8%	0	-	probably_damaging(0.959)	deleterious(0.05)	deleterious(0.748)	NULL
CALCOCO2	10241	genome.wustl.edu	37	17	46928470	46928470	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005831.3	+1	reviewed	p.Q188P	0.137	161	0%	92	29.3%	38	23.6%	benign(0.116)	tolerated(0.14)	neutral(0.259)	HMMPfam_CALCOCO1
ATP5G1	516	genome.wustl.edu	37	17	46970885	46970885	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000513347	+1	known	p.E36*	0.998	98	0%	148	37.8%	0	-	-	-	-	NULL
ZNF652	22834	genome.wustl.edu	37	17	47394859	47394859	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145365.1	-1	validated	p.E77*	1.000	114	0%	65	15.4%	10	20%	-	-	-	NULL
ZNF652	22834	genome.wustl.edu	37	17	47394933	47394933	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145365.1	-1	validated	p.K52T	1.000	99	0%	78	38.5%	7	57.1%	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
PHB	5245	genome.wustl.edu	37	17	47484166	47484166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002634.2	-1	reviewed	p.Q187H	1.000	78	0%	77	26%	342	37.1%	benign(0.25)	deleterious(0)	deleterious(0.470)	HMMPfam_Band_7,HMMSmart_SM00244
LOC100131693	100131693	genome.wustl.edu	37	17	47502025	47502025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726582.1	-1	model	p.P87H	1.000	297	0%	379	31.7%	40	0%	-	-	-	HMMPfam_IF4E,superfamily_Translation initiation factor eIF4e
NXPH3	11248	genome.wustl.edu	37	17	47656419	47656419	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007225.2	+1	validated	p.I172	0.996	59	0%	106	30.2%	0	-	-	-	-	HMMPfam_Neurexophilin
SPOP	8405	genome.wustl.edu	37	17	47684731	47684731	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007226.1	-1	reviewed	p.R240*	1.000	175	0%	112	29.5%	19	15.7%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
FAM117A	81558	genome.wustl.edu	37	17	47810017	47810017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030802.3	-1	validated	p.R88C	1.000	81	1.2%	60	31.7%	21	38%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ITGA3	3675	genome.wustl.edu	37	17	48145641	48145641	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005501.2	+1	reviewed	p.F212	0.969	21	0%	34	32.4%	37	51.3%	-	-	-	superfamily_Integrin alpha N-terminal domain
ACSF2	80221	genome.wustl.edu	37	17	48540598	48540598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025149.4	+1	validated	p.K292E	0.024	52	0%	74	33.8%	61	29.5%	benign(0.002)	tolerated(0.57)	neutral(0.006)	HMMPfam_AMP-binding,superfamily_SSF56801
CHAD	1101	genome.wustl.edu	37	17	48545702	48545704	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001267.2	-1	reviewed	p.N157in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
MYCBPAP	84073	genome.wustl.edu	37	17	48597028	48597028	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032133.4	+1	validated	p.R309*	0.103	65	0%	81	28.4%	0	-	-	-	-	NULL
SPATA20	64847	genome.wustl.edu	37	17	48627914	48627914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022827.2	+1	provisional	p.F372L	1.000	161	0%	314	29.9%	95	47.3%	benign(0.001)	tolerated(0.43)	neutral(0.013)	superfamily_Six-hairpin glycosidases
CACNA1G	8913	genome.wustl.edu	37	17	48653164	48653164	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018896.3	+1	validated	p.S467	0.985	36	0%	41	29.3%	2	50%	-	-	-	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48673956	48673956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018896.3	+1	validated	p.F1005I	0.999	102	0%	186	30.1%	3	33.3%	benign(0.003)	tolerated(0.5)	neutral(0.010)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48685253	48685253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018896.3	+1	validated	p.F1526L	1.000	306	0%	423	37.1%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1G	8913	genome.wustl.edu	37	17	48703853	48703853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018896.3	+1	validated	p.G2292D	0.817	35	0%	54	33.3%	5	40%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ABCC3	8714	genome.wustl.edu	37	17	48738398	48738398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000502426	+1	known	p.R326W	0.982	78	0%	98	36.7%	3	33.3%	unknown(0)	-	-	NULL
ABCC3	8714	genome.wustl.edu	37	17	48741394	48741394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003786.3	+1	reviewed	p.F420L	1.000	104	0%	138	33.3%	15	26.6%	benign(0.063)	tolerated(0.26)	neutral(0.038)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SPAG9	9043	genome.wustl.edu	37	17	49057279	49057279	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130528.2	-1	reviewed	e26-1	1.000	97	0%	39	25.6%	0	-	-	-	-	-
SPAG9	9043	genome.wustl.edu	37	17	49059918	49059918	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130528.2	-1	reviewed	p.I1068	1.000	152	0%	78	23.1%	23	4.3%	-	-	-	superfamily_WD40 repeat-like
CA10	56934	genome.wustl.edu	37	17	49710967	49710967	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082533.1	-1	reviewed	p.I278	1.000	117	0%	57	33.3%	1	0%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
CA10	56934	genome.wustl.edu	37	17	49825135	49825135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082533.1	-1	reviewed	p.R108H	1.000	129	0%	62	38.7%	6	50%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
CA10	56934	genome.wustl.edu	37	17	50008395	50008395	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082533.1	-1	reviewed	p.F78	1.000	151	0%	65	30.8%	6	16.6%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
KIF2B	84643	genome.wustl.edu	37	17	51901651	51901651	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032559.4	+1	validated	p.N419	0.202	61	0%	58	27.6%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
NOG	9241	genome.wustl.edu	37	17	54671703	54671703	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005450.4	+1	reviewed	p.N40I	1.000	15	0%	22	27.3%	5	40%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_Noggin,superfamily_SSF57501
VEZF1	7716	genome.wustl.edu	37	17	56060209	56060209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007146.2	-1	validated	p.K193N	1.000	77	0%	92	27.2%	49	34.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SRSF1	6426	genome.wustl.edu	37	17	56082658	56082658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000423765	-1	known	p.K291N	1.000	23	0%	38	28.9%	140	36.4%	-	-	-	NULL
OR4D1	26689	genome.wustl.edu	37	17	56232705	56232705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012374.1	+1	provisional	p.R64Q	0.972	140	0%	278	35.3%	0	-	benign(0.253)	deleterious(0.04)	neutral(0.375)	HMMPfam_7tm_1,superfamily_SSF81321
EPX	8288	genome.wustl.edu	37	17	56270885	56270885	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000502.4	+1	reviewed	p.R108	0.000	69	0%	108	37%	0	-	-	-	-	NULL
EPX	8288	genome.wustl.edu	37	17	56276488	56276488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000502.4	+1	reviewed	p.R403I	0.050	41	0%	58	27.6%	0	-	possibly_damaging(0.872)	deleterious(0)	deleterious(0.784)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
EPX	8288	genome.wustl.edu	37	17	56276915	56276915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000502.4	+1	reviewed	p.D433Y	1.000	139	0%	116	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
LPO	4025	genome.wustl.edu	37	17	56329746	56329746	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006151.2	+1	reviewed	p.G328	0.998	41	0%	63	25.4%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
MPO	4353	genome.wustl.edu	37	17	56349231	56349231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000250.1	-1	reviewed	p.F605L	0.999	37	0%	63	30.2%	0	-	possibly_damaging(0.804)	tolerated(0.07)	deleterious(0.621)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
MPO	4353	genome.wustl.edu	37	17	56352921	56352921	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000250.1	-1	reviewed	p.I449	0.066	74	0%	117	23.1%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
MTMR4	9110	genome.wustl.edu	37	17	56572621	56572621	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004687.4	-1	validated	p.S961*	1.000	95	0%	116	27.6%	10	30%	-	-	-	NULL
MTMR4	9110	genome.wustl.edu	37	17	56572803	56572803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004687.4	-1	validated	p.F900L	1.000	135	0%	137	32.1%	8	12.5%	possibly_damaging(0.906)	tolerated(0.33)	neutral(0.384)	NULL
MTMR4	9110	genome.wustl.edu	37	17	56581717	56581717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004687.4	-1	validated	p.H478N	1.000	81	0%	90	25.6%	14	71.4%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	superfamily_(Phosphotyrosine protein) phosphatases II
C17orf47	284083	genome.wustl.edu	37	17	56620794	56620794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001038704.1	-1	predicted	p.P252T	0.000	69	0%	53	34%	0	-	probably_damaging(0.994)	-	-	NULL
TEX14	56155	genome.wustl.edu	37	17	56642267	56642267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198393.2	-1	reviewed	p.S1383P	0.780	355	0%	220	28.6%	0	-	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
TEX14	56155	genome.wustl.edu	37	17	56676432	56676432	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198393.2	-1	reviewed	p.V758	0.008	224	0%	134	26.9%	0	-	-	-	-	NULL
PPM1E	22843	genome.wustl.edu	37	17	57043102	57043102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014906.3	+1	reviewed	p.E211K	1.000	135	0%	57	33.3%	0	-	benign(0.406)	tolerated(0.07)	neutral(0.450)	superfamily_Protein serine/threonine phosphatase 2C catalytic domain
PPM1E	22843	genome.wustl.edu	37	17	57057918	57057918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014906.3	+1	reviewed	p.K598N	1.000	84	0%	37	29.7%	0	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	NULL
PPM1E	22843	genome.wustl.edu	37	17	57058280	57058280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014906.3	+1	reviewed	p.S719Y	0.990	51	0%	31	29%	1	100%	benign(0.318)	tolerated(0.1)	neutral(0.386)	NULL
TRIM37	4591	genome.wustl.edu	37	17	57105976	57105976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005207.2	-1	reviewed	p.R686Q	1.000	180	0%	196	24.5%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMG8	55181	genome.wustl.edu	37	17	57290205	57290205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018149.6	+1	validated	p.S674L	0.759	71	0%	118	37.3%	12	50%	benign(0.004)	tolerated(0.28)	neutral(0.032)	HMMPfam_DUF2146
CLTC	1213	genome.wustl.edu	37	17	57760152	57760152	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004859.3	+1	reviewed	p.E1255*	1.000	182	0%	86	39.5%	141	3.5%	-	-	-	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
PTRH2	51651	genome.wustl.edu	37	17	57775155	57775155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016077.3	-1	validated	p.S62I	0.769	137	0%	89	22.5%	66	40.9%	possibly_damaging(0.859)	deleterious(0.03)	deleterious(0.697)	NULL
RPS6KB1	6198	genome.wustl.edu	37	17	58003778	58003778	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000425292	+1	known	p.M128R	0.711	85	0%	44	34.1%	0	-	-	-	-	NULL
RPS6KB1	6198	genome.wustl.edu	37	17	58003789	58003789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000425292	+1	known	p.P132S	0.997	103	0%	58	25.9%	0	-	-	-	-	NULL
RNFT1	51136	genome.wustl.edu	37	17	58033868	58033868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016125.3	-1	validated	p.R351Q	0.023	100	0%	93	35.5%	15	26.6%	benign(0.038)	tolerated(0.44)	neutral(0.015)	NULL
USP32	84669	genome.wustl.edu	37	17	58372107	58372107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032582.3	-1	validated	p.M116I	1.000	105	0%	89	29.2%	6	83.3%	benign(0.001)	tolerated(0.77)	neutral(0.001)	superfamily_SSF47473
PPM1D	8493	genome.wustl.edu	37	17	58740381	58740381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003620.2	+1	reviewed	p.R429M	0.995	110	0%	84	28.6%	13	38.4%	possibly_damaging(0.835)	deleterious(0)	deleterious(0.763)	NULL
PPM1D	8493	genome.wustl.edu	37	17	58740750	58740750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003620.2	+1	reviewed	p.R552Q	1.000	69	0%	61	23%	16	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BCAS3	54828	genome.wustl.edu	37	17	59024712	59024712	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099432.1	+1	validated	p.K407T	1.000	131	0%	114	33.3%	11	9%	benign(0.019)	tolerated(0.2)	neutral(0.050)	superfamily_WD40 repeat-like
BCAS3	54828	genome.wustl.edu	37	17	59067518	59067518	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099432.1	+1	validated	p.E470*	1.000	47	0%	42	35.7%	12	8.3%	-	-	-	NULL
BCAS3	54828	genome.wustl.edu	37	17	59469413	59469413	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099432.1	+1	validated	p.F905C	0.992	55	0%	83	27.7%	19	10.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TBX4	9496	genome.wustl.edu	37	17	59560786	59560786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018488.2	+1	reviewed	p.F516C	1.000	103	0%	149	36.2%	0	-	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
BRIP1	83990	genome.wustl.edu	37	17	59861738	59861738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032043.1	-1	reviewed	p.I507M	0.034	199	0%	221	27.1%	5	20%	benign(0.01)	tolerated(0.39)	neutral(0.017)	NULL
INTS2	57508	genome.wustl.edu	37	17	59952339	59952339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020748.2	-1	validated	p.K847N	1.000	82	0%	51	31.4%	4	25%	benign(0.008)	tolerated(0.5)	neutral(0.010)	NULL
MED13	9969	genome.wustl.edu	37	17	60060162	60060162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005121.2	-1	reviewed	p.A1068S	1.000	142	0%	81	21%	15	40%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
MED13	9969	genome.wustl.edu	37	17	60061601	60061601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005121.2	-1	reviewed	p.R940H	1.000	171	0.6%	88	30.7%	4	25%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
MED13	9969	genome.wustl.edu	37	17	60072519	60072519	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005121.2	-1	reviewed	p.K725	1.000	236	0%	156	30.8%	4	50%	-	-	-	NULL
ENSG00000188755	0	genome.wustl.edu	37	17	60348819	60348819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000339120	-1	known	p.D96Y	0.887	73	0%	134	22.4%	0	-	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	superfamily_RabGAP_TBC
EFCAB3	146779	genome.wustl.edu	37	17	60493532	60493532	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144933.1	+1	validated	p.E439*	0.998	127	0%	87	25.3%	4	25%	-	-	-	NULL
TLK2	11011	genome.wustl.edu	37	17	60679411	60679411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006852.3	+1	validated	p.L577I	1.000	149	0%	106	19.8%	16	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
MARCH10	162333	genome.wustl.edu	37	17	60813880	60813880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001100875.1	-1	validated	p.S450Y	0.025	63	0%	39	35.9%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
TANC2	26115	genome.wustl.edu	37	17	61432354	61432354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025185.3	+1	validated	p.L655I	1.000	105	0%	60	26.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TANC2	26115	genome.wustl.edu	37	17	61483524	61483524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025185.3	+1	validated	p.L1085I	1.000	81	0%	54	31.5%	5	20%	benign(0.068)	deleterious(0.02)	neutral(0.388)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CYB561	1534	genome.wustl.edu	37	17	61512487	61512487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001017916.1	-1	validated	p.A175T	0.464	24	0%	47	29.8%	87	40.2%	possibly_damaging(0.692)	deleterious(0.01)	deleterious(0.653)	HMMPfam_Cytochrom_B561,HMMSmart_SM00665
DDX42	11325	genome.wustl.edu	37	17	61883973	61883973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007372.2	+1	reviewed	p.R269W	1.000	124	0%	66	28.8%	65	35.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CSHL1	1444	genome.wustl.edu	37	17	61987475	61987475	+	Missense_Mutation	SNP	G	G	A	rs142516141	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000450719	-1	known	p.S168L	0.000	126	0%	105	34.3%	0	-	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
ICAM2	3384	genome.wustl.edu	37	17	62080240	62080240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000873.3	-1	reviewed	p.S232L	0.001	42	0%	57	31.6%	60	0%	possibly_damaging(0.889)	deleterious(0.01)	deleterious(0.755)	NULL
ERN1	2081	genome.wustl.edu	37	17	62122798	62122798	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001433.3	-1	reviewed	p.I858	0.004	110	0%	96	31.2%	4	25%	-	-	-	HMMPfam_Ribonuc_2-5A,superfamily_Protein kinase-like (PK-like)
POLG2	11232	genome.wustl.edu	37	17	62492561	62492561	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007215.3	-1	reviewed	p.K176Q	0.040	106	0%	186	32.3%	8	50%	benign(0.012)	tolerated(0.17)	neutral(0.059)	superfamily_SSF55681
DDX5	1655	genome.wustl.edu	37	17	62496745	62496745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004396.3	-1	validated	p.D455N	1.000	147	0%	304	30.3%	725	40.8%	possibly_damaging(0.582)	tolerated(0.06)	deleterious(0.522)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP95	90799	genome.wustl.edu	37	17	62512864	62512864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138363.1	+1	provisional	p.E131*	0.677	213	0%	172	30.2%	6	0%	-	-	-	NULL
SMURF2	64750	genome.wustl.edu	37	17	62542057	62542057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022739.3	-1	validated	p.R719Q	1.000	181	0%	156	30.8%	26	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
SMURF2	64750	genome.wustl.edu	37	17	62542441	62542441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022739.3	-1	validated	p.R696K	0.995	147	0%	93	34.4%	41	46.3%	probably_damaging(0.956)	deleterious(0.03)	deleterious(0.764)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
SMURF2	64750	genome.wustl.edu	37	17	62579633	62579633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022739.3	-1	validated	p.R172I	1.000	289	0%	202	35.1%	18	38.8%	possibly_damaging(0.497)	deleterious(0.04)	deleterious(0.515)	HMMPfam_WW,HMMSmart_WW,superfamily_WW_Rsp5_WWP
RGS9	8787	genome.wustl.edu	37	17	63173900	63173900	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003835.3	+1	reviewed	p.P211	0.944	244	0%	192	28.6%	2	0%	-	-	-	NULL
RGS9	8787	genome.wustl.edu	37	17	63221584	63221584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003835.3	+1	reviewed	p.L624F	0.118	24	0%	55	40%	1	0%	benign(0.121)	tolerated(0.09)	neutral(0.306)	NULL
APOH	350	genome.wustl.edu	37	17	64210703	64210703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000042.2	-1	reviewed	p.E284*	0.962	184	0%	134	36.6%	0	-	-	-	-	HMMPfam_Sushi_2,superfamily_Complement_control_module
BPTF	2186	genome.wustl.edu	37	17	65900009	65900009	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182641.3	+1	reviewed	p.K883T	1.000	116	0%	92	23.9%	8	62.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
BPTF	2186	genome.wustl.edu	37	17	65909003	65909003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182641.3	+1	reviewed	p.T1668M	0.108	72	1.4%	44	25%	33	42.4%	possibly_damaging(0.886)	tolerated(0.09)	deleterious(0.643)	NULL
KPNA2	3838	genome.wustl.edu	37	17	66042028	66042028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002266.2	+1	reviewed	p.F496L	1.000	123	0%	218	67%	251	91.2%	possibly_damaging(0.913)	deleterious(0.02)	deleterious(0.748)	superfamily_ARM repeat
ABCA8	10351	genome.wustl.edu	37	17	66898957	66898957	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007168.2	-1	reviewed	p.Y847*	0.000	129	0%	89	23.6%	0	-	-	-	-	NULL
ABCA8	10351	genome.wustl.edu	37	17	66903979	66903979	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007168.2	-1	reviewed	p.S687*	0.957	370	0%	203	30.5%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA8	10351	genome.wustl.edu	37	17	66925204	66925204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007168.2	-1	reviewed	p.L371I	0.397	51	0%	28	17.9%	0	-	benign(0.124)	tolerated(1)	neutral(0.010)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66925272	66925272	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007168.2	-1	reviewed	p.S348*	0.001	59	0%	18	50%	0	-	-	-	-	NULL
ABCA9	10350	genome.wustl.edu	37	17	66980306	66980306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080283.3	-1	reviewed	p.R1464W	1.000	106	0%	57	38.6%	1	0%	unknown(0)	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA9	10350	genome.wustl.edu	37	17	66987093	66987093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080283.3	-1	reviewed	p.S1241Y	0.992	245	0%	113	29.2%	0	-	benign(0.206)	deleterious(0.01)	neutral(0.426)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67016674	67016674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080283.3	-1	reviewed	p.L819I	0.388	139	0%	75	32%	0	-	probably_damaging(0.971)	tolerated(0.1)	deleterious(0.700)	NULL
ABCA9	10350	genome.wustl.edu	37	17	67039853	67039853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080283.3	-1	reviewed	p.A193T	0.006	74	0%	28	39.3%	0	-	benign(0)	tolerated(1)	-	NULL
ABCA6	23460	genome.wustl.edu	37	17	67129936	67129936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080284.2	-1	reviewed	p.I213V	0.017	84	0%	32	34.4%	0	-	benign(0.012)	tolerated(1)	neutral(0.001)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67178399	67178399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080282.3	-1	reviewed	p.K888N	0.327	51	0%	37	32.4%	0	-	probably_damaging(0.975)	tolerated(0.13)	deleterious(0.669)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67178908	67178908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080282.3	-1	reviewed	p.D847Y	0.582	97	0%	96	22.9%	0	-	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67189674	67189674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080282.3	-1	reviewed	p.R534I	1.000	234	0%	364	25.5%	1	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA10	10349	genome.wustl.edu	37	17	67215784	67215784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080282.3	-1	reviewed	p.F144L	0.062	86	0%	58	32.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ABCA5	23461	genome.wustl.edu	37	17	67257802	67257802	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018672.3	-1	reviewed	p.E1135*	1.000	36	0%	28	17.9%	3	66.6%	-	-	-	NULL
ABCA5	23461	genome.wustl.edu	37	17	67285378	67285378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018672.3	-1	reviewed	p.K614N	0.648	323	0%	157	26.8%	8	37.5%	benign(0.002)	tolerated(1)	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
MAP2K6	5608	genome.wustl.edu	37	17	67501945	67501945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002758.3	+1	reviewed	p.K14T	1.000	206	0%	85	28.2%	52	51.9%	benign(0.017)	tolerated(0.18)	neutral(0.057)	NULL
KCNJ16	3773	genome.wustl.edu	37	17	68129270	68129270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018658.1	+1	reviewed	p.D348N	1.000	68	0%	32	34.4%	0	-	benign(0.071)	tolerated(0.11)	neutral(0.277)	HMMPfam_IRK,superfamily_Ig_E-set
KCNJ2	3759	genome.wustl.edu	37	17	68171797	68171797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000891.2	+1	reviewed	p.G206V	1.000	148	0%	113	37.2%	0	-	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_IRK,superfamily_E set domains
COG1	9382	genome.wustl.edu	37	17	71192781	71192781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018714.2	+1	reviewed	p.C151G	1.000	94	0%	170	30%	23	52.1%	possibly_damaging(0.712)	tolerated(0.52)	neutral(0.266)	NULL
COG1	9382	genome.wustl.edu	37	17	71202381	71202381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018714.2	+1	reviewed	p.R867C	0.995	88	0%	140	26.4%	71	46.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTYH2	94015	genome.wustl.edu	37	17	72227120	72227120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032646.5	+1	reviewed	p.F132L	1.000	120	0%	140	27.9%	1	100%	benign(0.001)	tolerated(1)	-	HMMPfam_Tweety
TTYH2	94015	genome.wustl.edu	37	17	72239541	72239541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032646.5	+1	reviewed	p.L222M	0.837	245	0%	322	12.4%	2	50%	probably_damaging(0.96)	deleterious(0.03)	deleterious(0.768)	HMMPfam_Tweety
TTYH2	94015	genome.wustl.edu	37	17	72245491	72245491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032646.5	+1	reviewed	p.R295S	1.000	66	0%	99	35.4%	5	0%	possibly_damaging(0.699)	tolerated(0.95)	neutral(0.252)	HMMPfam_Tweety
CD300A	11314	genome.wustl.edu	37	17	72470721	72470721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007261.2	+1	validated	p.I144L	0.000	74	0%	71	15.5%	16	0%	benign(0.06)	tolerated(0.22)	neutral(0.046)	NULL
CD300LB	124599	genome.wustl.edu	37	17	72527568	72527568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174892.2	-1	validated	p.Q11H	0.004	48	0%	48	39.6%	1	0%	possibly_damaging(0.949)	-	-	NULL
TMEM104	54868	genome.wustl.edu	37	17	72832145	72832145	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017728.3	+1	validated	p.F270	0.088	68	0%	86	37.2%	19	36.8%	-	-	-	NULL
GRIN2C	2905	genome.wustl.edu	37	17	72844084	72844084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000835.3	-1	reviewed	p.F560L	1.000	73	1.4%	100	29%	3	33.3%	benign(0.013)	tolerated(0.62)	neutral(0.005)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
FADS6	283985	genome.wustl.edu	37	17	72874541	72874541	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178128.3	-1	validated	p.L324	0.999	67	0%	117	29.1%	0	-	-	-	-	NULL
C17orf28	283987	genome.wustl.edu	37	17	72956018	72956018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030630.2	-1	validated	p.E322D	1.000	39	0%	56	25%	56	35.7%	benign(0)	tolerated(0.95)	-	HMMPfam_Hid1
SLC16A5	9121	genome.wustl.edu	37	17	73089932	73089932	+	Splice_Site	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004695.2	+1	provisional	e1+2	1.000	42	0%	69	10.1%	0	-	-	-	-	-
SLC16A5	9121	genome.wustl.edu	37	17	73102021	73102021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004695.2	+1	provisional	p.L471F	0.599	47	0%	84	38.1%	3	0%	benign(0.045)	tolerated(0.17)	neutral(0.061)	NULL
NUP85	79902	genome.wustl.edu	37	17	73211908	73211908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024844.3	+1	reviewed	p.E155D	1.000	159	0%	163	35%	15	33.3%	benign(0.029)	tolerated(0.68)	neutral(0.004)	HMMPfam_Nucleopor_Nup85
RECQL5	9400	genome.wustl.edu	37	17	73625097	73625097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004259.5	-1	validated	p.E802D	0.010	41	0%	62	29%	20	35%	benign(0.014)	tolerated(0.55)	neutral(0.007)	HMMPfam_RecQ5
TRIM47	91107	genome.wustl.edu	37	17	73870925	73870925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033452.2	-1	validated	p.S519F	1.000	43	0%	69	21.7%	70	40%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
MRPL38	64978	genome.wustl.edu	37	17	73895623	73895623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032478.3	-1	reviewed	p.F281L	0.900	102	0%	175	10.9%	183	15.8%	benign(0.13)	tolerated(0.45)	neutral(0.023)	HMMPfam_PBP,superfamily_PEBP
QRICH2	84074	genome.wustl.edu	37	17	74275153	74275153	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032134.1	-1	provisional	p.E1463*	1.000	46	0%	83	31.3%	11	27.2%	-	-	-	NULL
QRICH2	84074	genome.wustl.edu	37	17	74276782	74276782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032134.1	-1	provisional	p.E1306K	0.996	235	0%	313	30.7%	4	75%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	NULL
ST6GALNAC2	10610	genome.wustl.edu	37	17	74562296	74562296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006456.2	-1	validated	p.E339K	0.997	176	0%	240	25.4%	20	45%	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	HMMPfam_Glyco_transf_29
JMJD6	23210	genome.wustl.edu	37	17	74714847	74714847	+	Silent	SNP	G	G	A	rs149210415	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001081461.1	-1	reviewed	p.D392	0.982	109	0%	105	35.2%	64	46.8%	-	-	-	NULL
MGAT5B	146664	genome.wustl.edu	37	17	74900375	74900375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198955.1	+1	validated	p.F198L	1.000	29	0%	62	25.8%	3	33.3%	benign(0.005)	tolerated(0.59)	neutral(0.004)	NULL
MGAT5B	146664	genome.wustl.edu	37	17	74944008	74944008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198955.1	+1	validated	p.R683W	0.101	30	0%	46	37%	1	100%	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	NULL
C17orf99	100141515	genome.wustl.edu	37	17	76142982	76142982	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000340363	+1	known	p.A20	0.000	85	1.2%	153	24.8%	0	-	-	-	-	NULL
AFMID	125061	genome.wustl.edu	37	17	76201777	76201777	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145526.1	+1	validated	p.F246	0.959	77	0%	105	37.1%	16	31.2%	-	-	-	superfamily_alpha/beta-Hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76445562	76445562	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000389840	-1	known	p.Y3701*	1.000	83	0%	164	26.2%	0	-	-	-	-	NULL
DNAH17	8632	genome.wustl.edu	37	17	76511090	76511090	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000389840	-1	known	p.I1289	0.154	88	0%	138	30.4%	0	-	-	-	-	HMMPfam_DHC_N2
DNAH17	8632	genome.wustl.edu	37	17	76521211	76521211	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000389840	-1	known	p.I1244	0.021	73	0%	92	29.3%	0	-	-	-	-	NULL
C1QTNF1	114897	genome.wustl.edu	37	17	77040155	77040155	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030968.2	+1	validated	p.Q35	0.782	70	0%	110	37.3%	3	0%	-	-	-	NULL
C1QTNF1	114897	genome.wustl.edu	37	17	77043771	77043771	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030968.2	+1	validated	p.S149	0.218	41	0%	74	28.4%	4	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
CBX8	57332	genome.wustl.edu	37	17	77768703	77768703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020649.2	-1	validated	p.D301Y	0.726	25	0%	45	26.7%	15	53.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CCDC40	55036	genome.wustl.edu	37	17	78071125	78071125	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017950.2	+1	validated	p.E1035*	0.020	46	0%	66	30.3%	2	0%	-	-	-	NULL
EIF4A3	9775	genome.wustl.edu	37	17	78112014	78112014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014740.3	-1	reviewed	p.F265C	0.995	90	0%	127	35.4%	222	48.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
CARD14	79092	genome.wustl.edu	37	17	78155435	78155435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024110.2	+1	reviewed	p.S66R	0.016	15	0%	22	36.4%	0	-	benign(0.002)	tolerated(0.75)	neutral(0.002)	HMMPfam_CARD,superfamily_DEATH domain
RNF213	57674	genome.wustl.edu	37	17	78298909	78298909	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508628	+1	known	p.K1035T	0.977	155	0%	173	11.6%	12	8.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RNF213	57674	genome.wustl.edu	37	17	78307916	78307916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508628	+1	known	p.F1385L	0.019	84	0%	102	31.4%	11	36.3%	benign(0.018)	tolerated(0.47)	neutral(0.011)	NULL
RNF213	57674	genome.wustl.edu	37	17	78308012	78308012	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508628	+1	known	p.G1417	0.175	87	0%	84	25%	9	44.4%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78327454	78327454	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508628	+1	known	p.L3522	0.000	93	0%	112	32.1%	34	11.7%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78358877	78358877	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000508628	+1	known	p.I4787M	0.153	52	0%	68	33.8%	66	15.1%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
RPTOR	57521	genome.wustl.edu	37	17	78796929	78796929	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020761.2	+1	reviewed	p.R348*	0.997	154	0%	298	35.6%	9	11.1%	-	-	-	NULL
LOC388428	388428	genome.wustl.edu	37	17	79152853	79152853	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_027255.1	+1	validated	NULL	0.000	65	0%	122	27.9%	0	-	-	-	-	-
SLC38A10	124565	genome.wustl.edu	37	17	79249847	79249847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037984.1	-1	validated	p.M278I	1.000	35	0%	78	32.1%	82	34.1%	benign(0.031)	tolerated(0.08)	neutral(0.301)	HMMPfam_Aa_trans
LINC00482	284185	genome.wustl.edu	37	17	79278783	79278783	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178519.2	-1	predicted	p.R128*	0.000	35	0%	78	23.1%	0	-	-	-	-	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79409857	79409857	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080519.2	+1	inferred	p.R439*	0.564	23	0%	42	31%	3	0%	-	-	-	NULL
BAHCC1	57597	genome.wustl.edu	37	17	79428955	79428955	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080519.2	+1	inferred	p.L2367F	0.984	9	0.000	23	0.304	8	37.5%	-	-	-	NULL
FSCN2	25794	genome.wustl.edu	37	17	79502166	79502166	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077182.2	+1	reviewed	p.Y306fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Actin-crosslinking proteins,HMMPfam_Fascin
C17orf70	80233	genome.wustl.edu	37	17	79518010	79518010	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025161.5	-1	validated	p.I19	0.023	6	0.000	25	0.520	26	26.9%	-	-	-	NULL
NPLOC4	55666	genome.wustl.edu	37	17	79536138	79536138	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017921.2	-1	validated	e14-1	1.000	129	0%	212	28.3%	0	-	-	-	-	-
FAM195B	348262	genome.wustl.edu	37	17	79782212	79782212	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093767.1	-1	validated	p.S26	0.883	35	0%	48	25%	199	40.2%	-	-	-	NULL
FASN	2194	genome.wustl.edu	37	17	80046702	80046702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004104.4	-1	reviewed	p.M785I	1.000	32	0%	43	46.5%	113	46.9%	possibly_damaging(0.936)	tolerated(0.1)	deleterious(0.668)	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like
SLC16A3	9123	genome.wustl.edu	37	17	80195519	80195519	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042422.1	+1	validated	p.R291	0.995	48	0%	76	27.6%	80	25%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SECTM1	6398	genome.wustl.edu	37	17	80282549	80282549	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003004.2	-1	reviewed	p.I104	0.000	46	0%	132	33.3%	22	18.1%	-	-	-	NULL
NARF	26502	genome.wustl.edu	37	17	80430507	80430507	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012336.3	+1	reviewed	p.F151	0.980	96	0%	107	27.1%	71	40.8%	-	-	-	HMMPfam_Fe_hyd_lg_C,superfamily_Fe-only hydrogenase
FN3K	64122	genome.wustl.edu	37	17	80706737	80706737	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022158.3	+1	validated	p.E159*	1.000	47	0%	117	37.6%	32	6.2%	-	-	-	superfamily_Kinase_like
TBCD	6904	genome.wustl.edu	37	17	80765517	80765517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005993.4	+1	reviewed	p.T374M	0.996	64	0%	110	31.8%	66	40.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HEAT,superfamily_ARM repeat
B3GNTL1	146712	genome.wustl.edu	37	17	80992912	80992912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009905.1	-1	validated	p.S114L	0.995	93	0%	243	35%	13	38.4%	possibly_damaging(0.61)	tolerated(0.08)	deleterious(0.511)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
THOC1	9984	genome.wustl.edu	37	18	214651	214651	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005131.2	-1	validated	p.T650S	1.000	119	0%	64	17.2%	15	0%	benign(0.002)	tolerated(0.79)	neutral(0.001)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
COLEC12	81035	genome.wustl.edu	37	18	333079	333079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130386.2	-1	validated	p.I627M	0.999	92	0%	157	35%	5	20%	possibly_damaging(0.74)	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
COLEC12	81035	genome.wustl.edu	37	18	346314	346314	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130386.2	-1	validated	p.K436	1.000	123	0%	59	30.5%	4	50%	-	-	-	NULL
COLEC12	81035	genome.wustl.edu	37	18	346656	346656	+	Missense_Mutation	SNP	C	C	A	rs192525084	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130386.2	-1	validated	p.E322D	0.968	301	0%	175	33.1%	8	50%	unknown(0)	-	-	NULL
COLEC12	81035	genome.wustl.edu	37	18	346930	346930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130386.2	-1	validated	p.S231N	1.000	140	0%	89	30.3%	8	37.5%	unknown(0)	-	-	NULL
COLEC12	81035	genome.wustl.edu	37	18	348156	348156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130386.2	-1	validated	p.E63D	1.000	240	0%	124	34.7%	1	0%	unknown(0)	-	-	NULL
CETN1	1068	genome.wustl.edu	37	18	580850	580850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004066.1	+1	reviewed	p.E148K	1.000	69	0%	130	30%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
CLUL1	27098	genome.wustl.edu	37	18	619340	619340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014410.4	+1	validated	p.K78N	1.000	119	0%	77	28.6%	7	57.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Clusterin,HMMSmart_CLb
YES1	7525	genome.wustl.edu	37	18	732879	732879	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005433.3	-1	reviewed	p.I460L	1.000	170	0%	127	26.8%	38	60.5%	possibly_damaging(0.657)	deleterious(0)	deleterious(0.676)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
LOC441806	441806	genome.wustl.edu	37	18	856850	856850	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344135.1	+1	model	p.W79*	0.990	54	0%	34	23.5%	0	-	-	-	-	HMMPfam_SAC3_GANP
METTL4	64863	genome.wustl.edu	37	18	2539055	2539055	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022840.3	-1	validated	p.E455*	1.000	145	0%	80	18.8%	5	40%	-	-	-	HMMPfam_MT-A70
MYOM1	8736	genome.wustl.edu	37	18	3090761	3090761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003803.3	-1	reviewed	p.E1302K	1.000	171	0%	100	31%	1	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMSmart_SM00409,superfamily_Immunoglobulin
MYOM1	8736	genome.wustl.edu	37	18	3151707	3151707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003803.3	-1	reviewed	p.K610E	1.000	44	0%	40	47.5%	0	-	benign(0.124)	tolerated(0.15)	neutral(0.251)	NULL
MYL12A	10627	genome.wustl.edu	37	18	3255763	3255763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006471.2	+1	provisional	p.Y121*	1.000	178	0%	262	32.8%	541	33.6%	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
MYL12B	103910	genome.wustl.edu	37	18	3277888	3277888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144944.1	+1	validated	p.E158K	1.000	94	0%	69	39.1%	924	39.7%	benign(0.045)	tolerated(0.68)	neutral(0.005)	superfamily_EF-hand
DLGAP1	9229	genome.wustl.edu	37	18	3582195	3582195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004746.2	-1	provisional	p.R548I	1.000	344	0%	280	25.4%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
EPB41L3	23136	genome.wustl.edu	37	18	5406895	5406895	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012307.2	-1	provisional	p.E744*	1.000	246	0%	158	28.5%	6	0%	-	-	-	HMMPfam_SAB
L3MBTL4	91133	genome.wustl.edu	37	18	6239872	6239872	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173464.3	-1	validated	e7-1	0.083	77	0%	86	29.1%	0	-	-	-	-	-
ARHGAP28	79822	genome.wustl.edu	37	18	6896537	6896537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010000.1	+1	validated	p.P489S	0.999	92	0%	55	34.5%	2	0%	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
LAMA1	284217	genome.wustl.edu	37	18	6992720	6992720	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005559.2	-1	validated	e36-1	0.987	126	0%	85	23.5%	0	-	-	-	-	-
LAMA1	284217	genome.wustl.edu	37	18	6995430	6995430	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005559.2	-1	validated	p.E1608*	0.004	363	0%	232	24.6%	2	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I
LAMA1	284217	genome.wustl.edu	37	18	7044735	7044735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005559.2	-1	validated	p.G321D	0.985	56	0%	49	42.9%	4	100%	probably_damaging(0.973)	tolerated(0.2)	neutral(0.464)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_Concanavalin A-like lectins/glucanases
PTPRM	5797	genome.wustl.edu	37	18	8113646	8113646	+	Silent	SNP	G	G	A	rs149158808	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105244.1	+1	reviewed	p.A673	0.984	90	0%	45	35.6%	71	50.7%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRM	5797	genome.wustl.edu	37	18	8253247	8253247	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105244.1	+1	reviewed	p.S863	0.235	48	0%	32	28.1%	109	50.4%	-	-	-	NULL
SOGA2	23255	genome.wustl.edu	37	18	8718560	8718560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015210.3	+1	predicted	p.R38W	1.000	91	0%	118	35.6%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8806949	8806949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015210.3	+1	predicted	p.A832V	0.000	56	0%	52	32.7%	1	0%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
NDUFV2	4729	genome.wustl.edu	37	18	9134248	9134248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021074.4	+1	reviewed	p.P241S	1.000	196	0%	288	12.2%	150	17.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9255547	9255547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015208.3	+1	validated	p.S761Y	0.739	98	0%	88	38.6%	2	50%	possibly_damaging(0.527)	deleterious(0.03)	deleterious(0.542)	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9255573	9255573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015208.3	+1	validated	p.L770I	0.000	101	0%	100	21%	2	0%	benign(0.01)	tolerated(0.32)	neutral(0.025)	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9257187	9257187	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015208.3	+1	validated	p.R1308*	1.000	76	0%	45	33.3%	13	53.8%	-	-	-	superfamily_Ankyrin repeat
ANKRD12	23253	genome.wustl.edu	37	18	9279560	9279560	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015208.3	+1	validated	p.K1974T	1.000	116	0%	91	30.8%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
RALBP1	10928	genome.wustl.edu	37	18	9522282	9522282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006788.3	+1	validated	p.E276D	1.000	91	0%	69	44.9%	35	37.1%	benign(0.041)	tolerated(0.17)	neutral(0.061)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ENSG00000175388	0	genome.wustl.edu	37	18	10761037	10761037	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000383408	-1	known	p.R371*	0.997	68	0%	59	30.5%	0	-	-	-	-	NULL
ENSG00000168738	0	genome.wustl.edu	37	18	10855389	10855389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000302079	-1	known	p.F165L	1.000	82	0%	42	23.8%	0	-	possibly_damaging(0.666)	tolerated(0.31)	neutral(0.263)	NULL
SLC35G4	646000	genome.wustl.edu	37	18	11610288	11610288	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_928960.2	+1	model	p.L232	0.984	159	0%	336	26.8%	0	-	-	-	-	superfamily_SSF103481
GNAL	2774	genome.wustl.edu	37	18	11868564	11868564	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182978.2	+1	validated	p.V311	0.667	128	0%	145	28.3%	1	100%	-	-	-	HMMPfam_G-alpha,superfamily_SSF52540
SLMO1	10650	genome.wustl.edu	37	18	12429376	12429376	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142405.1	+1	validated	p.E165*	1.000	169	0%	262	36.3%	1	0%	-	-	-	HMMPfam_PRELI
SPIRE1	56907	genome.wustl.edu	37	18	12452359	12452359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128626.1	-1	validated	p.L636R	1.000	94	0%	59	23.7%	6	50%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
SEH1L	81929	genome.wustl.edu	37	18	12987007	12987007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013437.1	+1	reviewed	p.R406L	1.000	109	0%	191	34%	28	35.7%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
CEP192	55125	genome.wustl.edu	37	18	13049566	13049566	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032142.3	+1	validated	p.E330*	0.809	132	0%	121	30.6%	3	0%	-	-	-	NULL
CEP192	55125	genome.wustl.edu	37	18	13056355	13056355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032142.3	+1	validated	p.L660I	0.000	106	0%	53	15.1%	17	5.8%	benign(0.354)	tolerated(0.06)	neutral(0.434)	NULL
RNMT	8731	genome.wustl.edu	37	18	13731676	13731676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003799.1	+1	provisional	p.D54N	0.000	128	0%	211	28%	8	87.5%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
ZNF519	162655	genome.wustl.edu	37	18	14105604	14105604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145287.3	-1	validated	p.R312I	1.000	144	0%	92	30.4%	2	50%	probably_damaging(0.99)	tolerated(0.48)	neutral(0.452)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000252234	0	genome.wustl.edu	37	18	14118668	14118668	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000516425	-1	novel	NULL	0.012	29	0%	13	30.8%	1	100%	-	-	-	-
NF1P5	4768	genome.wustl.edu	37	18	14156216	14156216	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000418350	-1	known	p.F94L	0.214	26	0%	29	17.2%	0	-	-	-	-	NULL
LOC646359	646359	genome.wustl.edu	37	18	14377894	14377894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_929288.3	-1	model	p.S290Y	0.794	41	0%	59	32.2%	0	-	-	-	-	NULL
POTEC	388468	genome.wustl.edu	37	18	14534938	14534938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137671.1	-1	validated	p.K293N	0.025	542	0%	352	14.5%	0	-	possibly_damaging(0.947)	tolerated(0.06)	deleterious(0.713)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEC	388468	genome.wustl.edu	37	18	14534948	14534948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137671.1	-1	validated	p.F290C	0.637	533	0%	347	13.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
POTEC	388468	genome.wustl.edu	37	18	14543061	14543061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137671.1	-1	validated	p.H29N	0.000	222	0%	392	30.1%	0	-	benign(0.138)	tolerated(0.29)	neutral(0.041)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14748569	14748569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.V51F	0.004	24	0%	55	29.1%	0	-	possibly_damaging(0.681)	tolerated(0.1)	deleterious(0.529)	superfamily_Ankyrin repeat
ANKRD30B	374860	genome.wustl.edu	37	18	14752951	14752951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.E150D	0.003	164	0%	235	36.2%	0	-	possibly_damaging(0.568)	tolerated(0.17)	neutral(0.254)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD30B	374860	genome.wustl.edu	37	18	14763743	14763743	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.D293	0.000	82	0%	40	27.5%	0	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14778041	14778041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.K463Q	0.026	90	0%	111	24.3%	0	-	unknown(0)	deleterious(0)	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14791465	14791465	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.F600	0.000	109	0%	65	36.9%	0	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14796383	14796383	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.L632F	0.002	240	0%	94	38.3%	0	-	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14840632	14840632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.A893T	0.000	57	0%	26	15.4%	0	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14848848	14848848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.K986N	0.171	116	0%	96	29.2%	0	-	possibly_damaging(0.64)	tolerated(0.12)	deleterious(0.485)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14851666	14851666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.K1122N	0.998	72	0%	81	23.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14851848	14851848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.A1183V	0.770	57	0%	79	26.6%	0	-	probably_damaging(0.989)	tolerated(0.07)	deleterious(0.758)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14852158	14852158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145029.1	+1	validated	p.Q1286H	0.844	86	0%	132	35.6%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
GREB1L	80000	genome.wustl.edu	37	18	19088476	19088476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142966.1	+1	provisional	p.E1553D	1.000	58	0%	37	27%	0	-	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	NULL
ESCO1	114799	genome.wustl.edu	37	18	19153612	19153612	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052911.2	-1	validated	p.K398T	1.000	146	0%	96	30.2%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ESCO1	114799	genome.wustl.edu	37	18	19153793	19153793	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052911.2	-1	validated	p.E338*	0.306	265	0%	197	38.1%	3	0%	-	-	-	NULL
MIB1	57534	genome.wustl.edu	37	18	19345793	19345793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020774.2	+1	validated	p.R97Q	1.000	91	0%	55	20%	10	70%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1
CTAGE1	64693	genome.wustl.edu	37	18	19997414	19997414	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172241.2	-1	validated	p.E121*	0.557	121	0%	153	29.4%	0	-	-	-	-	NULL
C18orf8	29919	genome.wustl.edu	37	18	21110523	21110523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013326.3	+1	validated	p.R614H	1.000	87	0%	84	31%	28	50%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	HMMPfam_Mic1
NPC1	4864	genome.wustl.edu	37	18	21113456	21113456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000271.4	-1	reviewed	p.K1206T	1.000	95	0%	93	44.1%	24	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Patched,superfamily_SSF82866
LAMA3	3909	genome.wustl.edu	37	18	21413848	21413848	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198129.1	+1	reviewed	p.V960	0.000	141	0%	59	23.7%	1	100%	-	-	-	NULL
TTC39C	125488	genome.wustl.edu	37	18	21644103	21644103	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135993.1	+1	validated	e2-1	1.000	393	0%	194	30.9%	0	-	-	-	-	-
ZNF521	25925	genome.wustl.edu	37	18	22804665	22804665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015461.2	-1	validated	p.E1073*	1.000	87	0%	41	31.7%	6	50%	-	-	-	NULL
ZNF521	25925	genome.wustl.edu	37	18	22806183	22806183	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015461.2	-1	validated	p.N567H	0.999	187	0%	92	40.2%	9	44.4%	possibly_damaging(0.912)	tolerated(0.15)	deleterious(0.605)	HMMSmart_SM00355
KCTD1	284252	genome.wustl.edu	37	18	24126860	24126860	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142730.1	-1	validated	p.C547	1.000	29	0%	47	25.5%	56	60.7%	-	-	-	NULL
AQP4	361	genome.wustl.edu	37	18	24436299	24436299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001650.4	-1	reviewed	p.N283S	1.000	285	0%	222	29.7%	1	0%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
AQP4	361	genome.wustl.edu	37	18	24436366	24436366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001650.4	-1	reviewed	p.R261C	1.000	197	0%	151	41.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Aquaporin-like
CHST9	83539	genome.wustl.edu	37	18	24496571	24496571	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031422.4	-1	validated	p.V328	0.977	99	0%	40	30%	2	50%	-	-	-	HMMPfam_Sulfotransfer_2
CHST9	83539	genome.wustl.edu	37	18	24496913	24496913	+	Silent	SNP	G	G	T	rs182429803	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031422.4	-1	validated	p.I214	0.824	173	0%	67	19.4%	0	-	-	-	-	HMMPfam_Sulfotransfer_2
CDH2	1000	genome.wustl.edu	37	18	25570083	25570083	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001792.3	-1	reviewed	p.R526*	1.000	169	0%	75	24%	16	12.5%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH2	1000	genome.wustl.edu	37	18	25585811	25585811	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001792.3	-1	reviewed	e6+2	1.000	134	0%	80	27.5%	0	-	-	-	-	-
DSC3	1825	genome.wustl.edu	37	18	28576910	28576910	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001941.3	-1	reviewed	p.E780D	0.998	166	0%	66	36.4%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
DSC3	1825	genome.wustl.edu	37	18	28588311	28588311	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001941.3	-1	reviewed	p.E482*	1.000	207	0%	91	28.6%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
DSC3	1825	genome.wustl.edu	37	18	28609511	28609511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001941.3	-1	reviewed	p.E146D	1.000	90	0%	75	40%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,superfamily_Cadherin-like
DSC2	1824	genome.wustl.edu	37	18	28662281	28662281	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024422.3	-1	reviewed	p.L396	1.000	133	0%	110	12.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28914115	28914115	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001942.2	+1	reviewed	p.E319*	0.982	82	0%	53	26.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28919739	28919739	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001942.2	+1	reviewed	p.N480H	0.029	66	0%	42	19%	0	-	possibly_damaging(0.909)	tolerated(0.49)	neutral(0.372)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28934328	28934328	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001942.2	+1	reviewed	p.I723	0.997	108	0%	72	27.8%	0	-	-	-	-	HMMPfam_Cadherin_C
DSG3	1830	genome.wustl.edu	37	18	29041208	29041208	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001944.2	+1	reviewed	p.E278*	0.950	114	0%	71	25.4%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
DSG2	1829	genome.wustl.edu	37	18	29115249	29115249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001943.3	+1	reviewed	p.D433Y	0.996	68	0%	27	33.3%	9	22.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSG2	1829	genome.wustl.edu	37	18	29121176	29121176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001943.3	+1	reviewed	p.M634V	0.135	211	0%	94	22.3%	42	52.3%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
DSG2	1829	genome.wustl.edu	37	18	29122786	29122786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001943.3	+1	reviewed	p.E769K	0.994	153	0%	91	29.7%	18	38.8%	benign(0.11)	tolerated(0.18)	neutral(0.065)	NULL
TTR	7276	genome.wustl.edu	37	18	29172911	29172911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000371.3	+1	reviewed	p.R41Q	0.322	106	0%	64	29.7%	0	-	benign(0.035)	tolerated(0.25)	neutral(0.039)	HMMPfam_Transthyretin,HMMSmart_TR_THY,PatternScan_TRANSTHYRETIN_1,superfamily_Transthyretin
TTR	7276	genome.wustl.edu	37	18	29178617	29178617	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000371.3	+1	reviewed	p.V141	0.005	74	0%	42	23.8%	0	-	-	-	-	HMMPfam_Transthyretin,HMMSmart_TR_THY,superfamily_Transthyretin
B4GALT6	9331	genome.wustl.edu	37	18	29264327	29264327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004775.3	-1	reviewed	p.F21L	1.000	179	0%	279	10.4%	4	0%	benign(0.001)	tolerated(1)	-	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29477757	29477757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014939.3	-1	validated	p.T530A	1.000	73	0%	79	32.9%	12	33.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_TPR-like
TRAPPC8	22878	genome.wustl.edu	37	18	29487460	29487460	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014939.3	-1	validated	p.L451R	1.000	116	0%	82	30.5%	11	36.3%	benign(0.233)	tolerated(0.57)	neutral(0.029)	NULL
RNF125	54941	genome.wustl.edu	37	18	29598948	29598948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017831.3	+1	reviewed	p.L41P	0.974	26	0%	36	13.9%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
RNF125	54941	genome.wustl.edu	37	18	29617189	29617189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017831.3	+1	reviewed	p.R92I	0.982	160	0%	157	32.5%	2	0%	possibly_damaging(0.462)	tolerated(0.2)	neutral(0.201)	superfamily_SSF57850
RNF138	51444	genome.wustl.edu	37	18	29704699	29704699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016271.3	+1	reviewed	p.S151Y	1.000	196	0%	180	35.6%	15	53.3%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
FAM59A	64762	genome.wustl.edu	37	18	29848336	29848336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022751.1	-1	provisional	p.S709Y	0.026	91	0%	44	36.4%	1	0%	benign(0.013)	tolerated(0.67)	neutral(0.003)	NULL
C18orf34	374864	genome.wustl.edu	37	18	30791941	30791941	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105528.1	-1	validated	p.D719	0.172	297	0%	125	19.2%	0	-	-	-	-	NULL
C18orf34	374864	genome.wustl.edu	37	18	30795600	30795600	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105528.1	-1	validated	p.F664L	0.001	105	0%	40	27.5%	0	-	benign(0.301)	tolerated(1)	neutral(0.093)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31250667	31250667	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030632.1	+1	provisional	p.G170*	1.000	176	0%	113	32.7%	0	-	-	-	-	NULL
ASXL3	80816	genome.wustl.edu	37	18	31320407	31320407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030632.1	+1	provisional	p.K1013N	1.000	24	0%	25	28%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31324143	31324143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030632.1	+1	provisional	p.R1444Q	0.739	26	0%	33	18.2%	0	-	possibly_damaging(0.837)	tolerated(0.12)	deleterious(0.580)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31326416	31326416	+	Missense_Mutation	SNP	G	G	A	rs190401191	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030632.1	+1	provisional	p.D2202N	1.000	102	0%	98	28.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NOL4	8715	genome.wustl.edu	37	18	31673467	31673467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003787.3	-1	validated	p.R245I	1.000	155	0%	72	20.8%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
NOL4	8715	genome.wustl.edu	37	18	31709908	31709908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003787.3	-1	validated	p.S114L	1.000	255	0%	148	33.8%	0	-	possibly_damaging(0.706)	deleterious(0.02)	deleterious(0.637)	NULL
DTNA	1837	genome.wustl.edu	37	18	32418060	32418060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001390.4	+1	reviewed	p.S366F	1.000	128	0%	42	31%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
ZNF397	84307	genome.wustl.edu	37	18	32825306	32825306	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001135178.2	+1	reviewed	p.R213*	0.439	120	0%	144	32.6%	7	14.2%	-	-	-	NULL
ZSCAN30	100101467	genome.wustl.edu	37	18	32834019	32834019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001112734.2	-1	validated	p.V294I	0.822	227	0%	134	29.9%	8	12.5%	benign(0.001)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
ZSCAN30	100101467	genome.wustl.edu	37	18	32834191	32834191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001112734.2	-1	validated	p.K236N	0.012	199	0%	158	31%	10	40%	benign(0.006)	tolerated(0.49)	neutral(0.011)	NULL
ZSCAN30	100101467	genome.wustl.edu	37	18	32843508	32843508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001112734.2	-1	validated	p.E174D	0.039	118	0%	137	27%	6	16.6%	possibly_damaging(0.945)	tolerated(0.28)	neutral(0.421)	NULL
GALNT1	2589	genome.wustl.edu	37	18	33257697	33257697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020474.3	+1	reviewed	p.L153I	1.000	107	0%	35	34.3%	36	36.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
ELP2	55250	genome.wustl.edu	37	18	33725995	33725995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018255.1	+1	provisional	p.G326V	1.000	181	0%	119	30.3%	35	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
FHOD3	80206	genome.wustl.edu	37	18	34310638	34310638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025135.2	+1	validated	p.E974D	1.000	124	0%	105	30.5%	7	28.5%	possibly_damaging(0.617)	tolerated(0.08)	deleterious(0.514)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
FHOD3	80206	genome.wustl.edu	37	18	34327022	34327022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025135.2	+1	validated	p.R1211W	1.000	126	0%	171	35.7%	8	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
KIAA1328	57536	genome.wustl.edu	37	18	34539300	34539300	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020776.1	+1	validated	p.E160*	1.000	208	0%	141	29.8%	0	-	-	-	-	NULL
RIT2	6014	genome.wustl.edu	37	18	40323568	40323568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002930.2	-1	provisional	p.R182C	1.000	150	0%	106	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC14A2	8170	genome.wustl.edu	37	18	43207095	43207095	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007163.3	+1	validated	p.L168	0.010	114	0%	70	25.7%	0	-	-	-	-	HMMPfam_UT
SLC14A2	8170	genome.wustl.edu	37	18	43216962	43216962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007163.3	+1	validated	p.L220F	0.000	88	0%	73	27.4%	1	100%	benign(0)	tolerated(0.47)	neutral(0.011)	HMMPfam_UT
EPG5	57724	genome.wustl.edu	37	18	43532514	43532514	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020964.2	-1	validated	p.F368	1.000	94	0%	40	30%	2	50%	-	-	-	NULL
PSTPIP2	9050	genome.wustl.edu	37	18	43565404	43565404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000360076	-1	known	p.F310C	0.078	146	0%	86	26.7%	2	0%	unknown(0)	-	-	NULL
RNF165	494470	genome.wustl.edu	37	18	43914289	43914289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152470.2	+1	validated	p.R18*	1.000	67	0%	73	26%	0	-	-	-	-	NULL
RNF165	494470	genome.wustl.edu	37	18	44027525	44027525	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152470.2	+1	validated	e4-1	1.000	127	0%	117	33.3%	0	-	-	-	-	-
RNF165	494470	genome.wustl.edu	37	18	44030343	44030343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152470.2	+1	validated	p.A234T	0.998	104	0%	58	37.9%	0	-	benign(0.009)	tolerated(0.62)	neutral(0.005)	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44057588	44057588	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145473.2	-1	reviewed	p.H462	0.803	40	0%	36	13.9%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44065006	44065006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145472.2	-1	reviewed	p.S942Y	0.998	181	0%	106	37.7%	0	-	possibly_damaging(0.708)	tolerated(0.07)	deleterious(0.575)	HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
LOXHD1	125336	genome.wustl.edu	37	18	44109156	44109156	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144612.6	-1	reviewed	p.K1227T	1.000	89	0%	62	22.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44122754	44122754	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144612.6	-1	reviewed	p.I950	1.000	90	0%	68	16.2%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44159694	44159694	+	Missense_Mutation	SNP	C	C	T	rs140437150	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144612.6	-1	reviewed	p.D292N	0.999	158	0%	93	35.5%	0	-	benign(0.25)	deleterious(0)	deleterious(0.470)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
LOXHD1	125336	genome.wustl.edu	37	18	44181393	44181393	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441551	-1	known	p.P288S	0.999	91	0%	53	17%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
KATNAL2	83473	genome.wustl.edu	37	18	44593467	44593467	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031303.2	+1	validated	p.E196*	1.000	110	0%	70	15.7%	1	0%	-	-	-	superfamily_SSF52540
CTIF	9811	genome.wustl.edu	37	18	46238063	46238063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142397.1	+1	validated	p.R194Q	1.000	118	0%	99	37.4%	13	23%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LIPG	9388	genome.wustl.edu	37	18	47095817	47095817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006033.2	+1	reviewed	p.D157G	0.000	103	0%	123	32.5%	15	33.3%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
ACAA2	10449	genome.wustl.edu	37	18	47322241	47322241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006111.2	-1	reviewed	p.V108A	0.825	66	0%	115	28.7%	46	52.1%	benign(0)	tolerated(0.89)	-	HMMPfam_Thiolase_N,superfamily_Thiolase-like
MBD1	4152	genome.wustl.edu	37	18	47802220	47802220	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015846.3	-1	reviewed	p.L216	1.000	88	0%	140	29.3%	61	37.7%	-	-	-	NULL
MBD1	4152	genome.wustl.edu	37	18	47802758	47802758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015846.3	-1	reviewed	p.R169K	1.000	190	0%	291	30.2%	37	43.2%	probably_damaging(0.978)	tolerated(0.23)	neutral(0.462)	HMMPfam_zf-CXXC
MBD1	4152	genome.wustl.edu	37	18	47806299	47806299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015846.3	-1	reviewed	p.R22C	1.000	40	0%	96	32.3%	28	60.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
LOC100287130	100287130	genome.wustl.edu	37	18	47808806	47808806	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343599.1	+1	model	p.S2	0.002	21	0%	29	37.9%	165	49.6%	-	-	-	NULL
MAPK4	5596	genome.wustl.edu	37	18	48190559	48190559	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002747.3	+1	reviewed	p.I77	0.897	40	0%	27	40.7%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAPK4	5596	genome.wustl.edu	37	18	48190847	48190847	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002747.3	+1	reviewed	p.R173	1.000	21	0%	11	36.4%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ME2	4200	genome.wustl.edu	37	18	48446853	48446853	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002396.4	+1	reviewed	p.F254	1.000	125	0%	74	27%	44	38.6%	-	-	-	HMMPfam_malic,superfamily_SSF53223
SMAD4	4089	genome.wustl.edu	37	18	48573625	48573625	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005359.5	+1	reviewed	p.K70T	1.000	86	0%	45	15.6%	21	4.7%	benign(0.199)	deleterious(0.04)	neutral(0.368)	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
C18orf54	162681	genome.wustl.edu	37	18	51887079	51887079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173529.4	+1	validated	p.R46I	0.801	129	0%	219	30.1%	7	57.1%	possibly_damaging(0.462)	tolerated(0.13)	neutral(0.404)	NULL
C18orf54	162681	genome.wustl.edu	37	18	51889177	51889177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173529.4	+1	validated	p.R209I	1.000	102	0%	156	19.9%	2	50%	possibly_damaging(0.718)	deleterious(0.01)	deleterious(0.665)	NULL
CCDC68	80323	genome.wustl.edu	37	18	52596082	52596082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143829.1	-1	validated	p.S211Y	0.527	247	0%	147	25.9%	1	0%	possibly_damaging(0.519)	deleterious(0.04)	deleterious(0.523)	NULL
TCF4	6925	genome.wustl.edu	37	18	53017619	53017619	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083962.1	-1	reviewed	p.R174*	1.000	168	0%	64	23.4%	6	16.6%	-	-	-	NULL
TCF4	6925	genome.wustl.edu	37	18	53131363	53131363	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083962.1	-1	reviewed	p.E51*	1.000	125	0%	68	30.9%	8	25%	-	-	-	NULL
TXNL1	9352	genome.wustl.edu	37	18	54291640	54291640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004786.2	-1	validated	p.R83Q	1.000	260	0%	169	28.4%	101	37.6%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
WDR7	23335	genome.wustl.edu	37	18	54424198	54424198	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015285.2	+1	reviewed	p.E792*	1.000	103	0%	84	34.5%	2	0%	-	-	-	NULL
ONECUT2	9480	genome.wustl.edu	37	18	55103734	55103734	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004852.2	+1	reviewed	p.F262	1.000	41	0%	58	27.6%	0	-	-	-	-	NULL
FECH	2235	genome.wustl.edu	37	18	55221620	55221620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012515.2	-1	reviewed	p.E323K	0.999	134	0%	75	24%	26	7.6%	benign(0.065)	tolerated(0.29)	neutral(0.034)	HMMPfam_Ferrochelatase,superfamily_Chelatase
ATP8B1	5205	genome.wustl.edu	37	18	55336654	55336654	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005603.4	-1	reviewed	p.E665*	1.000	151	0%	54	38.9%	3	0%	-	-	-	superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP8B1	5205	genome.wustl.edu	37	18	55355660	55355660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005603.4	-1	reviewed	p.A434T	0.993	356	0%	203	37.4%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81665
ALPK2	115701	genome.wustl.edu	37	18	56203089	56203089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052947.3	-1	validated	p.E1444K	0.001	54	0%	34	35.3%	1	0%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56203607	56203607	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052947.3	-1	validated	p.K1271T	0.000	69	0%	38	23.7%	2	0%	benign(0.297)	deleterious(0)	deleterious(0.536)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56205041	56205041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052947.3	-1	validated	p.D793A	0.000	217	0%	157	22.3%	1	0%	benign(0.009)	deleterious(0.03)	neutral(0.365)	NULL
ZNF532	55205	genome.wustl.edu	37	18	56620896	56620896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018181.4	+1	validated	p.K1005N	1.000	57	0%	47	29.8%	17	41.1%	probably_damaging(0.96)	tolerated(0.18)	neutral(0.459)	NULL
PIGN	23556	genome.wustl.edu	37	18	59742050	59742050	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012327.5	-1	reviewed	p.F861V	1.000	98	0%	42	33.3%	39	41%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PigN
KIAA1468	57614	genome.wustl.edu	37	18	59878388	59878388	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020854.3	+1	validated	p.R177*	1.000	156	0%	75	42.7%	3	33.3%	-	-	-	NULL
KIAA1468	57614	genome.wustl.edu	37	18	59878466	59878466	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020854.3	+1	validated	p.K203Q	1.000	174	0%	94	30.9%	4	75%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
KIAA1468	57614	genome.wustl.edu	37	18	59895736	59895736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020854.3	+1	validated	p.E451D	0.994	100	0%	45	20%	8	37.5%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
SERPINB4	6318	genome.wustl.edu	37	18	61305037	61305037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002974.2	-1	validated	p.F363L	0.690	141	0%	74	27%	0	-	possibly_damaging(0.93)	deleterious(0.04)	deleterious(0.726)	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin
SERPINB4	6318	genome.wustl.edu	37	18	61308147	61308147	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002974.2	-1	validated	p.R144*	0.000	374	0%	179	33.5%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINB4	6318	genome.wustl.edu	37	18	61310773	61310773	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000413673	-1	known	p.S15*	0.029	306	0%	115	33%	0	-	benign(0.005)	tolerated(1)	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB3	6317	genome.wustl.edu	37	18	61328086	61328086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006919.2	-1	validated	p.L57P	0.115	259	0%	85	25.9%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINB7	8710	genome.wustl.edu	37	18	61471669	61471669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040147.1	+1	validated	p.R315C	0.986	79	0%	33	27.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
HMSD	284293	genome.wustl.edu	37	18	61621721	61621721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123366.1	+1	validated	p.R51I	0.135	191	0%	263	28.5%	1	0%	-	-	-	HMMPfam_Serpin,superfamily_Serpins
SERPINB8	5271	genome.wustl.edu	37	18	61648980	61648980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002640.3	+1	validated	p.F111S	1.000	168	0%	159	36.5%	1	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CDH7	1005	genome.wustl.edu	37	18	63526215	63526215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004361.2	+1	reviewed	p.N476I	1.000	81	0%	49	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
CDH7	1005	genome.wustl.edu	37	18	63547714	63547714	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004361.2	+1	reviewed	p.E648*	1.000	76	0%	69	26.1%	0	-	-	-	-	HMMPfam_Cadherin_C
CDH19	28513	genome.wustl.edu	37	18	64172259	64172259	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021153.2	-1	reviewed	p.L703	0.000	193	0%	60	38.3%	0	-	-	-	-	HMMPfam_Cadherin_C
CDH19	28513	genome.wustl.edu	37	18	64172414	64172414	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021153.2	-1	reviewed	p.E652*	0.992	159	0%	92	33.7%	0	-	-	-	-	HMMPfam_Cadherin_C
DSEL	92126	genome.wustl.edu	37	18	65178281	65178281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032160.2	-1	validated	p.D1199Y	0.660	218	0%	263	34.2%	3	33.3%	possibly_damaging(0.509)	deleterious(0.02)	deleterious(0.553)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DSEL	92126	genome.wustl.edu	37	18	65179816	65179816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032160.2	-1	validated	p.R687I	1.000	101	0%	120	35%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DSEL	92126	genome.wustl.edu	37	18	65180693	65180693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032160.2	-1	validated	p.L395I	1.000	128	0%	213	32.9%	5	80%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
DSEL	92126	genome.wustl.edu	37	18	65181371	65181371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032160.2	-1	validated	p.L169I	1.000	69	0%	102	34.3%	6	50%	possibly_damaging(0.907)	tolerated(0.19)	neutral(0.410)	NULL
CCDC102B	79839	genome.wustl.edu	37	18	66504023	66504023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093729.1	+1	validated	p.R8Q	0.004	51	0%	25	32%	1	0%	benign(0.035)	tolerated(0.07)	neutral(0.321)	NULL
CCDC102B	79839	genome.wustl.edu	37	18	66564571	66564571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001093729.1	+1	validated	p.M390T	1.000	147	0%	114	21.9%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
DOK6	220164	genome.wustl.edu	37	18	67424997	67424997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152721.5	+1	validated	p.Q248H	1.000	115	0%	62	43.5%	2	100%	benign(0.198)	tolerated(0.21)	neutral(0.063)	NULL
NETO1	81832	genome.wustl.edu	37	18	70461453	70461453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138966.2	-1	reviewed	p.E180K	1.000	114	0%	76	30.3%	0	-	possibly_damaging(0.948)	tolerated(0.12)	deleterious(0.651)	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
NETO1	81832	genome.wustl.edu	37	18	70461640	70461640	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138966.2	-1	reviewed	e5-1	1.000	79	0%	38	26.3%	0	-	-	-	-	-
TIMM21	29090	genome.wustl.edu	37	18	71816215	71816215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014177.2	+1	validated	p.L58I	0.000	50	0%	128	31.2%	33	51.5%	benign(0.06)	tolerated(0.42)	neutral(0.018)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72343146	72343146	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017757.2	+1	reviewed	p.S57	0.000	64	0%	95	31.6%	1	0%	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72344369	72344369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017757.2	+1	reviewed	p.R465I	0.032	39	0%	60	33.3%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF407	55628	genome.wustl.edu	37	18	72346576	72346576	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017757.2	+1	reviewed	p.E1201*	0.716	37	0%	28	32.1%	0	-	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72632618	72632618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017757.2	+1	reviewed	p.E1800K	0.999	82	0%	28	60.7%	7	42.8%	probably_damaging(0.984)	deleterious(0.03)	deleterious(0.795)	NULL
ZNF236	7776	genome.wustl.edu	37	18	74561577	74561577	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007345.3	+1	validated	p.E49*	1.000	97	0%	77	45.5%	2	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL3	27164	genome.wustl.edu	37	18	76752162	76752162	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_171999.2	+1	validated	p.C57	0.949	20	0%	21	42.9%	0	-	-	-	-	HMMSmart_SM00355
HSBP1L1	440498	genome.wustl.edu	37	18	77728123	77728123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136180.1	+1	validated	p.Q51H	1.000	81	0%	118	29.7%	8	37.5%	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	HMMPfam_HSBP1
SHC2	25759	genome.wustl.edu	37	19	438796	438796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012435.2	-1	validated	p.N214K	1.000	60	0%	131	18.3%	12	58.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
HCN2	610	genome.wustl.edu	37	19	613983	613983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001194.3	+1	validated	p.E653K	1.000	13	0%	17	47.1%	9	44.4%	possibly_damaging(0.879)	tolerated(0.15)	deleterious(0.584)	HMMSmart_cNMP,superfamily_cNMP_binding
POLRMT	5442	genome.wustl.edu	37	19	618523	618523	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005035.3	-1	reviewed	p.S1129	0.975	182	0%	291	31.3%	197	53.8%	-	-	-	HMMPfam_RNA_pol,superfamily_SSF56672
POLRMT	5442	genome.wustl.edu	37	19	621775	621775	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005035.3	-1	reviewed	p.F641	0.998	14	0%	27	33.3%	113	43.3%	-	-	-	superfamily_SSF56672
PALM	5064	genome.wustl.edu	37	19	727034	727034	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002579.2	+1	reviewed	p.I28	0.878	13	0%	20	25%	12	66.6%	-	-	-	NULL
C19orf21	126353	genome.wustl.edu	37	19	757377	757377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173481.2	+1	predicted	p.W144L	0.288	26	0%	50	38%	9	44.4%	benign(0.033)	tolerated(0.17)	neutral(0.060)	NULL
C19orf21	126353	genome.wustl.edu	37	19	757397	757397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173481.2	+1	predicted	p.A151T	0.595	28	0%	48	31.2%	7	57.1%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
AZU1	566	genome.wustl.edu	37	19	829639	829639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001700.3	+1	reviewed	p.S98Y	0.542	32	0%	89	24.7%	0	-	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MED16	10025	genome.wustl.edu	37	19	873487	873514	+	Frame_Shift_Del	DEL	CGCCCACCCACTGCAAGAGCTGCTGCAG	CGCCCACCCACTGCAAGAGCTGCTGCAG	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	CGCCCACCCACTGCAAGAGCTGCTGCAG	CGCCCACCCACTGCAAGAGCTGCTGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005481.2	-1	validated	p.L614fs	0.999:0.689:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.992:0.996:0.951:0.644:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ABCA7	10347	genome.wustl.edu	37	19	1065283	1065283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019112.3	+1	reviewed	p.F2100L	1.000	67	0%	103	36.9%	40	32.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
HMHA1	23526	genome.wustl.edu	37	19	1084254	1084254	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012292.2	+1	validated	p.Q991	0.009	20	0%	30	30%	19	0%	-	-	-	NULL
ATP8B3	148229	genome.wustl.edu	37	19	1789555	1789555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138813.2	-1	reviewed	p.D884Y	0.012	11	0%	18	44.4%	0	-	possibly_damaging(0.745)	tolerated(0.09)	deleterious(0.570)	superfamily_SSF56784
ATP8B3	148229	genome.wustl.edu	37	19	1800385	1800385	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138813.2	-1	reviewed	p.E406*	0.002	54	0%	80	23.7%	0	-	-	-	-	HMMPfam_E1-E2_ATPase
AP3D1	8943	genome.wustl.edu	37	19	2109138	2109138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003938.5	-1	validated	p.R1078Q	0.082	59	0%	97	23.7%	138	42.7%	unknown(0)	tolerated(0.39)	-	HMMPfam_BLVR
JSRP1	126306	genome.wustl.edu	37	19	2254235	2254235	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144616.3	-1	validated	p.A71	0.024	127	0%	219	32%	13	15.3%	-	-	-	NULL
THOP1	7064	genome.wustl.edu	37	19	2794856	2794856	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003249.3	+1	provisional	p.F108	0.329	111	0%	187	31.6%	47	34%	-	-	-	superfamily_SSF55486
ZNF555	148254	genome.wustl.edu	37	19	2853382	2853382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152791.4	+1	validated	p.R440Q	0.000	96	0%	82	29.3%	3	33.3%	possibly_damaging(0.701)	tolerated(1)	neutral(0.252)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF556	80032	genome.wustl.edu	37	19	2878213	2878213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024967.1	+1	provisional	p.Q419H	0.989	58	0%	80	37.5%	2	100%	benign(0.012)	tolerated(1)	neutral(0.001)	superfamily_SSF57667
ZNF57	126295	genome.wustl.edu	37	19	2916172	2916172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173480.2	+1	validated	p.G76E	1.000	178	0%	217	36.4%	5	60%	benign(0.026)	tolerated(0.23)	neutral(0.043)	NULL
TLE6	79816	genome.wustl.edu	37	19	2994089	2994089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143986.1	+1	validated	p.F537S	0.703	55	0%	98	20.4%	0	-	probably_damaging(0.958)	tolerated(0.06)	deleterious(0.724)	HMMSmart_SM00320,superfamily_WD40 repeat-like
GNA15	2769	genome.wustl.edu	37	19	3151719	3151719	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002068.2	+1	validated	p.L167R	1.000	23	0%	31	29%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CELF5	60680	genome.wustl.edu	37	19	3290273	3290273	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021938.3	+1	reviewed	p.F411V	1.000	85	0%	132	22.7%	1	0%	benign(0.106)	deleterious(0.05)	neutral(0.353)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ATCAY	85300	genome.wustl.edu	37	19	3885801	3885801	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033064.4	+1	reviewed	p.N12	1.000	39	0%	68	35.3%	0	-	-	-	-	NULL
ITGB1BP3	27231	genome.wustl.edu	37	19	3939943	3939943	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_170678.2	+1	validated	p.P123	0.779	90	0%	149	15.4%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD24	170961	genome.wustl.edu	37	19	4207303	4207303	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133475.1	+1	provisional	p.Q177H	0.946	149	0%	239	23.4%	3	100%	possibly_damaging(0.848)	tolerated(0.05)	deleterious(0.671)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SHD	56961	genome.wustl.edu	37	19	4288247	4288247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020209.3	+1	validated	p.H242N	1.000	57	0%	86	30.2%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
TMIGD2	126259	genome.wustl.edu	37	19	4298045	4298045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144615.2	-1	validated	p.A115V	0.000	30	0%	59	25.4%	2	0%	possibly_damaging(0.482)	tolerated(0.14)	neutral(0.409)	HMMSmart_SM00409,superfamily_Immunoglobulin
CHAF1A	10036	genome.wustl.edu	37	19	4430593	4430593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005483.2	+1	validated	p.F634L	0.988	178	0%	309	34%	56	51.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PLIN4	729359	genome.wustl.edu	37	19	4508804	4508804	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080400.1	-1	provisional	p.A1212	0.995	39	0%	58	31%	1	100%	-	-	-	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain
DPP9	91039	genome.wustl.edu	37	19	4694829	4694829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139159.4	-1	reviewed	p.D454Y	1.000	57	0%	101	29.7%	44	43.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DPPIV_N,superfamily_SSF82171
MIR7-3HG	284424	genome.wustl.edu	37	19	4772296	4772296	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_027148.1	+1	validated	NULL	0.005	217	0%	280	24.6%	0	-	-	-	-	-
KDM4B	23030	genome.wustl.edu	37	19	5077410	5077410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015015.2	+1	validated	p.A237T	1.000	30	0%	66	24.2%	28	46.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00558,HMMPfam_JmjC
LOC100130109	100130109	genome.wustl.edu	37	19	5576841	5576841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726381.2	-1	model	p.E37K	0.998	74	0%	130	35.4%	162	0%	-	-	-	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
SAFB2	9667	genome.wustl.edu	37	19	5604601	5604601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014649.2	-1	validated	p.I518V	0.000	130	0%	170	32.9%	26	30.7%	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_SSF54928
SAFB	6294	genome.wustl.edu	37	19	5645359	5645359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002967.2	+1	reviewed	p.K186N	0.477	168	0%	186	31.7%	46	52.1%	benign(0.364)	tolerated(0.13)	neutral(0.368)	NULL
LONP1	9361	genome.wustl.edu	37	19	5714240	5714240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004793.2	-1	reviewed	p.R158C	0.855	127	0%	284	35.9%	60	38.3%	possibly_damaging(0.76)	deleterious(0)	deleterious(0.726)	HMMPfam_LON,HMMSmart_LON
DUS3L	56931	genome.wustl.edu	37	19	5790316	5790316	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020175.2	-1	validated	p.Q43	0.026	66	0%	106	19.8%	21	23.8%	-	-	-	NULL
FUT3	2525	genome.wustl.edu	37	19	5844652	5844652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000149.3	-1	reviewed	p.L67I	1.000	18	0%	27	40.7%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Glyco_transf_10
ACER1	125981	genome.wustl.edu	37	19	6307194	6307194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133492.2	-1	validated	p.R199M	0.117	62	0%	59	25.4%	0	-	possibly_damaging(0.509)	tolerated(0.05)	deleterious(0.516)	HMMPfam_aPHC
SLC25A41	284427	genome.wustl.edu	37	19	6429828	6429828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000458275	-1	known	p.S210F	0.148	61	0%	66	34.8%	0	-	unknown(0)	-	-	NULL
TNFSF9	8744	genome.wustl.edu	37	19	6535039	6535039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003811.3	+1	reviewed	p.E243K	0.000	14	0%	20	35%	4	0%	possibly_damaging(0.603)	tolerated(0.54)	neutral(0.216)	NULL
EMR1	2015	genome.wustl.edu	37	19	6916284	6916284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001974.3	+1	reviewed	p.K442T	0.001	96	0%	65	30.8%	1	0%	possibly_damaging(0.819)	tolerated(0.27)	neutral(0.343)	superfamily_Family A G protein-coupled receptor-like
EMR1	2015	genome.wustl.edu	37	19	6924789	6924789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001974.3	+1	reviewed	p.R631Q	0.022	135	0%	163	33.1%	0	-	benign(0.149)	tolerated(1)	neutral(0.013)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
EMR1	2015	genome.wustl.edu	37	19	6928298	6928298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000381404	+1	known	p.P739T	0.000	96	0%	98	32.7%	0	-	possibly_damaging(0.948)	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
MCOLN1	57192	genome.wustl.edu	37	19	7598493	7598493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020533.2	+1	reviewed	p.R554C	1.000	30	0%	40	37.5%	30	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PNPLA6	10908	genome.wustl.edu	37	19	7607957	7607957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006702.4	+1	reviewed	p.R493H	1.000	41	0%	61	45.9%	94	30.8%	benign(0.43)	tolerated(0.3)	neutral(0.169)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
STXBP2	6813	genome.wustl.edu	37	19	7712249	7712249	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006949.2	+1	reviewed	p.F516	0.978	28	0%	54	29.6%	95	41%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
C19orf59	199675	genome.wustl.edu	37	19	7743400	7743400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174918.2	+1	reviewed	p.E133K	0.052	203	0%	355	32.4%	0	-	benign(0.273)	tolerated(0.17)	neutral(0.088)	NULL
CLEC4G	339390	genome.wustl.edu	37	19	7794259	7794259	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198492.3	-1	validated	p.N292T	0.003	28	0%	69	33.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CLEC4G	339390	genome.wustl.edu	37	19	7795011	7795011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198492.3	-1	validated	p.G174V	0.997	11	0%	23	39.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00034,superfamily_C-type lectin-like
FBN3	84467	genome.wustl.edu	37	19	8190870	8190870	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032447.3	-1	reviewed	p.V879	0.954	33	0%	54	20.4%	2	50%	-	-	-	HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA
CERS4	79603	genome.wustl.edu	37	19	8322837	8322837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024552.2	+1	validated	p.F272L	1.000	222	0%	348	27.9%	100	34%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
MYO1F	4542	genome.wustl.edu	37	19	8613157	8613157	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012335.3	-1	validated	p.I382	0.918	101	0%	148	35.1%	17	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1F	4542	genome.wustl.edu	37	19	8615148	8615148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012335.3	-1	validated	p.R333C	0.991	57	0%	52	21.2%	20	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS10	81794	genome.wustl.edu	37	19	8651767	8651767	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030957.2	-1	reviewed	p.V724	1.000	86	0%	188	29.3%	14	35.7%	-	-	-	HMMPfam_ADAM_spacer1
ADAMTS10	81794	genome.wustl.edu	37	19	8670209	8670209	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030957.2	-1	reviewed	p.I41	0.917	38	0%	39	48.7%	11	27.2%	-	-	-	HMMPfam_Pep_M12B_propep
ACTL9	284382	genome.wustl.edu	37	19	8807918	8807918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178525.3	-1	validated	p.F378L	1.000	9	0.000	38	0.237	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
OR2Z1	284383	genome.wustl.edu	37	19	8842197	8842197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004699.1	+1	provisional	p.Q269H	0.000	114	0%	146	30.1%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MUC16	94025	genome.wustl.edu	37	19	9059465	9059465	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.S9327	0.000	237	0%	96	36.5%	1	100%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9062572	9062572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.A8292T	0.000	158	0%	64	26.6%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9064603	9064603	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.E7615*	0.000	180	0%	115	36.5%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9066906	9066906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.G6847D	0.000	313	0%	193	29%	2	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9070134	9070134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.R5771I	0.001	189	0%	101	30.7%	1	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9072625	9072625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.P4941T	0.000	306	0%	210	29.5%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9072982	9072982	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.E4822*	0.000	240	0%	147	36.1%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9074182	9074182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.D4422N	0.000	146	0%	82	36.6%	1	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9087277	9087277	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.D1513A	0.030	239	0%	130	38.5%	1	0%	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9089250	9089250	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.P855	0.000	146	0%	85	32.9%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9091606	9091606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024690.2	-1	validated	p.S70L	0.000	152	0%	89	42.7%	0	-	unknown(0)	-	-	NULL
OR7G2	390882	genome.wustl.edu	37	19	9212991	9212991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005193.1	-1	provisional	p.S331Y	0.000	118	0%	122	41%	0	-	benign(0.022)	tolerated(0.44)	neutral(0.014)	NULL
OR7D2	162998	genome.wustl.edu	37	19	9296665	9296665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175883.1	+1	provisional	p.D70N	0.993	142	0%	192	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF559	84527	genome.wustl.edu	37	19	9452645	9452645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032497.1	+1	provisional	p.L173R	0.000	77	0%	75	30.7%	12	75%	benign(0.091)	tolerated(0.33)	neutral(0.030)	superfamily_SSF57667
ZNF177	7730	genome.wustl.edu	37	19	9492002	9492002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003451.2	+1	validated	p.R172I	0.999	137	0%	78	30.8%	8	62.5%	possibly_damaging(0.864)	tolerated(0.07)	deleterious(0.653)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577518	9577518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152476.2	-1	validated	p.R702H	0.233	108	0%	61	31.1%	0	-	benign(0.001)	tolerated(1)	-	superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577948	9577948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152476.2	-1	validated	p.L559I	0.051	102	0%	57	12.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9578674	9578674	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152476.2	-1	validated	p.E317*	0.009	312	0%	148	29.1%	0	-	-	-	-	superfamily_SSF57667
ZNF561	93134	genome.wustl.edu	37	19	9721015	9721015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152289.2	-1	validated	p.R441Q	0.012	164	0%	107	30.8%	34	35.2%	benign(0.075)	tolerated(0.05)	neutral(0.350)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF561	93134	genome.wustl.edu	37	19	9721114	9721114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152289.2	-1	validated	p.R408H	0.003	212	0%	146	30.8%	16	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF846	162993	genome.wustl.edu	37	19	9868764	9868764	+	Missense_Mutation	SNP	C	C	T	rs60387559	byCluster;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077624.1	-1	validated	p.R330Q	0.001	105	0%	83	38.6%	3	33.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DNMT1	1786	genome.wustl.edu	37	19	10291528	10291528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001130823.1	-1	reviewed	p.E51K	1.000	250	0%	182	34.6%	28	39.2%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_DMAP_binding
CDC37	11140	genome.wustl.edu	37	19	10505942	10505942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007065.3	-1	reviewed	p.Y189D	1.000	189	0%	275	25.8%	471	32.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CDC37_M,superfamily_Hsp90 co-chaperone CDC37
CDC37	11140	genome.wustl.edu	37	19	10506618	10506618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007065.3	-1	reviewed	p.D122Y	1.000	102	0%	201	12.9%	442	18.5%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMPfam_CDC37_N
PDE4A	5141	genome.wustl.edu	37	19	10570022	10570022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000380686	+1	known	p.L16I	0.000	44	0%	93	31.2%	0	-	possibly_damaging(0.767)	tolerated(0.16)	neutral(0.344)	NULL
PDE4A	5141	genome.wustl.edu	37	19	10570054	10570054	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000380686	+1	known	p.T26	0.819	75	0%	118	16.1%	0	-	-	-	-	superfamily_HD-domain/PDEase-like
AP1M2	10053	genome.wustl.edu	37	19	10690390	10690390	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005498.4	-1	reviewed	e7+2	0.999	57	0%	95	40%	0	-	-	-	-	-
AP1M2	10053	genome.wustl.edu	37	19	10692225	10692225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005498.4	-1	reviewed	p.E162K	1.000	94	0%	144	23.6%	136	8%	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_1
QTRT1	81890	genome.wustl.edu	37	19	10812902	10812902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031209.2	+1	validated	p.E141D	1.000	35	0%	98	28.6%	47	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGT,superfamily_tRNA_ribo_trans
CARM1	10498	genome.wustl.edu	37	19	11015739	11015739	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199141.1	+1	validated	p.F111	0.995	105	0%	137	38.7%	114	40.3%	-	-	-	NULL
SMARCA4	6597	genome.wustl.edu	37	19	11138559	11138559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128849.1	+1	reviewed	p.M1105I	1.000	108	0%	226	38.9%	176	43.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF52540
SPC24	147841	genome.wustl.edu	37	19	11258777	11258777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182513.2	-1	provisional	p.L108M	1.000	79	0%	104	25%	32	46.8%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Spc24
DOCK6	57572	genome.wustl.edu	37	19	11326522	11326522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020812.2	-1	validated	p.L1326M	0.516	150	0%	287	31%	5	40%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	NULL
ELAVL3	1995	genome.wustl.edu	37	19	11569399	11569399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001420.3	-1	reviewed	p.S121P	0.998	49	0%	87	37.9%	0	-	benign(0.005)	tolerated(0.13)	neutral(0.253)	superfamily_RNA-binding domain RBD
ACP5	54	genome.wustl.edu	37	19	11686047	11686047	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001111034.1	-1	reviewed	p.G252	0.056	20	0%	25	36%	171	0%	-	-	-	superfamily_SSF56300
ACP5	54	genome.wustl.edu	37	19	11688009	11688009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001111034.1	-1	reviewed	p.F42L	0.997	82	0%	129	27.1%	85	0%	benign(0.271)	tolerated(0.2)	neutral(0.078)	HMMPfam_Metallophos,superfamily_SSF56300
ZNF439	90594	genome.wustl.edu	37	19	11978656	11978656	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152262.2	+1	provisional	p.R258*	0.000	155	0.6%	90	21.1%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF69	7620	genome.wustl.edu	37	19	12016351	12016351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000429654	+1	known	p.K380T	0.000	103	0%	64	35.9%	2	50%	possibly_damaging(0.927)	deleterious(0.03)	deleterious(0.740)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF700	90592	genome.wustl.edu	37	19	12059392	12059392	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144566.1	+1	provisional	p.E185*	0.891	143	0%	141	24.8%	13	53.8%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF700	90592	genome.wustl.edu	37	19	12060421	12060421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144566.1	+1	provisional	p.K528E	0.993	119	0%	133	21.1%	14	42.8%	possibly_damaging(0.657)	deleterious(0.02)	deleterious(0.615)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF433	163059	genome.wustl.edu	37	19	12127369	12127369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080411.1	-1	provisional	p.E105K	0.000	127	0%	104	20.2%	7	14.2%	possibly_damaging(0.838)	tolerated(0.08)	deleterious(0.620)	superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12155426	12155426	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080404.1	-1	inferred	p.F311V	0.180	187	0%	281	34.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF878	729747	genome.wustl.edu	37	19	12157571	12157571	+	Missense_Mutation	SNP	G	G	A	rs142910242	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080404.1	-1	inferred	p.S50L	0.630	198	0%	231	32.9%	2	0%	benign(0.294)	tolerated(0.23)	neutral(0.133)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF844	284391	genome.wustl.edu	37	19	12187226	12187226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136501.1	+1	provisional	p.L431I	0.000	139	0%	94	37.2%	5	60%	possibly_damaging(0.763)	tolerated(0.19)	neutral(0.332)	NULL
ZNF844	284391	genome.wustl.edu	37	19	12187552	12187552	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136501.1	+1	provisional	p.K539	0.049	122	0%	129	26.4%	9	66.6%	-	-	-	NULL
ZNF625	90589	genome.wustl.edu	37	19	12256985	12256985	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145233.2	-1	provisional	p.E16D	0.068	180	0%	193	22.3%	0	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
ZNF44	51710	genome.wustl.edu	37	19	12384337	12384337	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016264.3	-1	validated	p.K245Q	0.132	202	0%	228	26.3%	5	20%	possibly_damaging(0.608)	deleterious(0.02)	deleterious(0.594)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12429529	12429529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145276.2	-1	validated	p.R437Q	0.000	174	0%	129	36.4%	8	25%	possibly_damaging(0.791)	tolerated(0.6)	neutral(0.301)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF442	79973	genome.wustl.edu	37	19	12460983	12460983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030824.2	-1	validated	p.F472L	0.000	139	0%	120	33.3%	2	50%	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF442	79973	genome.wustl.edu	37	19	12461050	12461050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030824.2	-1	validated	p.R450K	0.001	113	0%	100	35%	1	100%	benign(0.001)	tolerated(0.87)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF799	90576	genome.wustl.edu	37	19	12502508	12502508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080821.1	-1	validated	p.S235Y	0.000	216	0%	203	32%	4	25%	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF443	10224	genome.wustl.edu	37	19	12541147	12541147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005815.4	-1	validated	p.E613D	1.000	301	0%	183	21.3%	7	57.1%	benign(0.17)	deleterious(0.03)	neutral(0.380)	superfamily_C2H2 and C2HC zinc fingers
ZNF443	10224	genome.wustl.edu	37	19	12541483	12541483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005815.4	-1	validated	p.E501D	0.991	151	0%	104	31.7%	7	42.8%	benign(0.022)	deleterious(0.05)	neutral(0.346)	superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575333	12575333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152601.3	-1	validated	p.R468I	0.000	122	0%	187	33.7%	4	50%	possibly_damaging(0.894)	tolerated(0.2)	neutral(0.401)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575501	12575501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152601.3	-1	validated	p.R412I	0.762	127	0%	223	22.9%	3	33.3%	possibly_damaging(0.809)	tolerated(0.12)	deleterious(0.565)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575681	12575681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152601.3	-1	validated	p.R352Q	0.000	132	0%	212	30.7%	8	12.5%	probably_damaging(0.962)	tolerated(1)	neutral(0.405)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12576269	12576269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152601.3	-1	validated	p.R156Q	0.000	140	0%	255	29.4%	1	0%	benign(0.289)	tolerated(1)	neutral(0.089)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12638606	12638606	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144976.3	-1	validated	p.S106R	0.009	140	0%	96	18.8%	6	50%	benign(0.364)	tolerated(0.43)	neutral(0.130)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF490	57474	genome.wustl.edu	37	19	12692305	12692305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020714.2	-1	validated	p.K195T	0.005	224	0%	219	31.5%	3	66.6%	benign(0.007)	tolerated(0.3)	neutral(0.029)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MAN2B1	4125	genome.wustl.edu	37	19	12775785	12775785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000528.3	-1	reviewed	p.A151T	1.000	28	0%	76	22.4%	61	27.8%	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
HOOK2	29911	genome.wustl.edu	37	19	12883667	12883667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013312.2	-1	validated	p.F105L	1.000	100	0%	159	35.8%	31	32.2%	benign(0.003)	tolerated(0.71)	neutral(0.002)	HMMPfam_HOOK
FARSA	2193	genome.wustl.edu	37	19	13041434	13041434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004461.2	-1	validated	p.E93K	1.000	35	0%	76	13.2%	89	10.1%	benign(0.001)	tolerated(0.2)	neutral(0.049)	"superfamily_""Winged helix"" DNA-binding domain"
C19orf53	28974	genome.wustl.edu	37	19	13888895	13888895	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014047.2	+1	validated	p.I61	0.605	49	0%	74	32.4%	315	37.7%	-	-	-	HMMPfam_DUF2462
CC2D1A	54862	genome.wustl.edu	37	19	14037637	14037637	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017721.4	+1	reviewed	p.E693*	1.000	123	0%	215	35.3%	57	14%	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RLN3	117579	genome.wustl.edu	37	19	14139128	14139128	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080864.2	+1	validated	p.E38*	1.000	27	0%	38	39.5%	0	-	-	-	-	HMMSmart_IlGF,superfamily_Insulin-like
IL27RA	9466	genome.wustl.edu	37	19	14162424	14162424	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004843.2	+1	reviewed	p.T512A	0.145	160	0%	297	38%	4	0%	possibly_damaging(0.459)	tolerated(0.4)	neutral(0.166)	NULL
LPHN1	22859	genome.wustl.edu	37	19	14262104	14262104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008701.2	-1	reviewed	p.L1336I	1.000	6	0.000	16	0.438	19	57.8%	benign(0.148)	tolerated(0.38)	neutral(0.030)	HMMPfam_Latrophilin
LPHN1	22859	genome.wustl.edu	37	19	14263416	14263416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008701.2	-1	reviewed	p.R1150W	1.000	128	0%	248	25.4%	56	30.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Latrophilin
DNAJB1	3337	genome.wustl.edu	37	19	14627677	14627677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006145.1	-1	provisional	p.F131L	0.994	70	0%	113	31%	141	47.5%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
ZNF333	84449	genome.wustl.edu	37	19	14829800	14829800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032433.2	+1	validated	p.R554Q	0.989	55	0%	38	34.2%	17	35.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR7C1	26664	genome.wustl.edu	37	19	14910580	14910580	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198944.1	-1	validated	p.F123	0.020	147	0%	109	17.4%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR7C1	26664	genome.wustl.edu	37	19	14910750	14910750	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198944.1	-1	validated	p.S67T	0.996	82	0%	81	30.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
OR7A10	390892	genome.wustl.edu	37	19	14951930	14951930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005190.1	-1	provisional	p.T254A	0.003	99	0%	83	26.5%	0	-	benign(0.081)	tolerated(0.08)	neutral(0.306)	HMMPfam_7tm_1,superfamily_SSF81321
OR7A10	390892	genome.wustl.edu	37	19	14952659	14952659	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005190.1	-1	provisional	p.E11*	0.114	49	0%	35	28.6%	0	-	-	-	-	superfamily_SSF81321
SLC1A6	6511	genome.wustl.edu	37	19	15065085	15065085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005071.1	-1	provisional	p.R409H	1.000	26	0%	47	34%	0	-	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	HMMPfam_SDF
CASP14	23581	genome.wustl.edu	37	19	15164410	15164410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012114.1	+1	reviewed	p.E49K	0.976	51	2%	39	20.5%	0	-	benign(0.011)	tolerated(0.23)	neutral(0.042)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP14	23581	genome.wustl.edu	37	19	15164693	15164693	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012114.1	+1	reviewed	p.F109	0.003	77	0%	38	34.2%	0	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
OR1I1	126370	genome.wustl.edu	37	19	15197903	15197903	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004713.1	+1	provisional	p.I9	0.770	163	0%	81	25.9%	0	-	-	-	-	superfamily_SSF81321
ILVBL	10994	genome.wustl.edu	37	19	15226687	15226687	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006844.3	-1	reviewed	p.E530*	1.000	74	0%	99	39.4%	65	24.6%	-	-	-	HMMPfam_TPP_enzyme_C,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
BRD4	23476	genome.wustl.edu	37	19	15379853	15379853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058243.2	-1	reviewed	p.D96N	1.000	169	0%	216	37.5%	33	48.4%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
WIZ	58525	genome.wustl.edu	37	19	15538166	15538166	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021241.2	-1	validated	p.Q236H	0.995	28	0%	52	38.5%	48	45.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RASAL3	64926	genome.wustl.edu	37	19	15566961	15566961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022904.1	-1	validated	p.R559W	0.214	81	0%	165	27.3%	19	0%	possibly_damaging(0.47)	deleterious(0.01)	deleterious(0.560)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
CYP4F22	126410	genome.wustl.edu	37	19	15651264	15651264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173483.3	+1	reviewed	p.K225N	1.000	21	0%	34	32.4%	0	-	benign(0.175)	tolerated(0.42)	neutral(0.030)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP4F8	11283	genome.wustl.edu	37	19	15734813	15734813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441682	+1	known	p.Y341H	1.000	91	0%	123	30.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_p450,superfamily_Cytochrome P450
LOC646575	646575	genome.wustl.edu	37	19	15777099	15777099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343630.1	+1	model	p.M46I	0.999	44	0%	26	38.5%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP4F12	66002	genome.wustl.edu	37	19	15784426	15784426	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023944.2	+1	reviewed	p.W29*	0.040	57	0%	51	35.3%	0	-	-	-	-	NULL
OR10H3	26532	genome.wustl.edu	37	19	15852673	15852673	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013938.1	+1	provisional	p.G157	0.000	275	0%	227	36.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000225607	0	genome.wustl.edu	37	19	15881850	15881850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000412610	-1	known	p.R240K	0.940	79	0%	91	41.8%	0	-	benign(0.002)	tolerated(0.36)	neutral(0.020)	NULL
CYP4F2	8529	genome.wustl.edu	37	19	16000449	16000449	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001082.3	-1	reviewed	p.K234	0.040	126	0%	141	29.1%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CHERP	10523	genome.wustl.edu	37	19	16630500	16630500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006387.5	-1	validated	p.S830L	0.999	191	0%	373	27.9%	72	45.8%	unknown(0)	tolerated(0.65)	-	NULL
CHERP	10523	genome.wustl.edu	37	19	16652748	16652748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006387.5	-1	validated	p.F44L	1.000	177	0%	323	33.7%	38	55.2%	benign(0.235)	deleterious(0)	neutral(0.468)	HMMPfam_Surp,HMMSmart_SM00648,superfamily_Surp module (SWAP domain Pfam 01805)
C19orf42	79086	genome.wustl.edu	37	19	16770252	16770252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024104.3	-1	validated	p.K25N	1.000	90	0%	209	32.1%	80	38.7%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	NULL
NWD1	284434	genome.wustl.edu	37	19	16923606	16923606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007525.2	+1	validated	p.K1311N	0.984	273	0%	269	34.9%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ABHD8	79575	genome.wustl.edu	37	19	17412293	17412293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024527.4	-1	validated	p.R45W	1.000	8	0.000	18	0.333	49	40.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM125A	93343	genome.wustl.edu	37	19	17535766	17535766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138401.2	+1	provisional	p.K262N	0.996	61	0%	83	25.3%	34	20.5%	possibly_damaging(0.844)	deleterious(0.04)	deleterious(0.672)	NULL
NXNL1	115861	genome.wustl.edu	37	19	17571442	17571442	+	Silent	SNP	G	G	T	rs185508084	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138454.1	-1	provisional	p.S79	0.999	64	0%	84	27.4%	0	-	-	-	-	superfamily_Thiordxn-like_fd
SLC27A1	376497	genome.wustl.edu	37	19	17611352	17611352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198580.1	+1	provisional	p.R461H	0.999	52	0%	66	28.8%	28	32.1%	possibly_damaging(0.791)	deleterious(0.03)	deleterious(0.661)	HMMPfam_AMP-binding,superfamily_SSF56801
FAM129C	199786	genome.wustl.edu	37	19	17657510	17657510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173544.4	+1	validated	p.E555K	0.011	33	0%	56	26.8%	1	0%	probably_damaging(0.979)	tolerated(0.13)	deleterious(0.674)	NULL
UNC13A	23025	genome.wustl.edu	37	19	17738725	17738725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080421.2	-1	validated	p.Q1348K	1.000	87	0%	106	28.3%	1	0%	benign(0.171)	deleterious(0.01)	neutral(0.421)	HMMPfam_DUF1041
UNC13A	23025	genome.wustl.edu	37	19	17766786	17766786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080421.2	-1	validated	p.D485N	0.076	46	0%	72	44.4%	0	-	benign(0.003)	tolerated(0.07)	neutral(0.319)	NULL
MAP1S	55201	genome.wustl.edu	37	19	17831764	17831764	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018174.4	+1	validated	p.V46	0.011	74	0%	148	27%	24	16.6%	-	-	-	NULL
MAP1S	55201	genome.wustl.edu	37	19	17837745	17837745	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018174.4	+1	validated	p.E518*	0.068	6	0.000	21	0.333	25	20%	-	-	-	NULL
FCHO1	23149	genome.wustl.edu	37	19	17873601	17873601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015122.2	+1	validated	p.Y20D	1.000	59	0%	92	31.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FCH,HMMSmart_SM00055
IL12RB1	3594	genome.wustl.edu	37	19	18170811	18170811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005535.1	-1	reviewed	p.G626C	0.004	59	0%	116	25.9%	10	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18375555	18375555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145304.1	-1	validated	p.M932T	0.986	32	0%	50	34%	1	0%	benign(0.164)	tolerated(0.2)	neutral(0.064)	NULL
CRTC1	23373	genome.wustl.edu	37	19	18864341	18864341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098482.1	+1	validated	p.E206D	0.117	167	0%	276	29.3%	23	60.8%	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
COPE	11316	genome.wustl.edu	37	19	19021872	19021872	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007263.3	-1	reviewed	p.F66	0.994	50	0%	85	31.8%	625	41.7%	-	-	-	HMMPfam_Coatomer_E
MAU2	23383	genome.wustl.edu	37	19	19452129	19452129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015329.3	+1	validated	p.E216D	1.000	46	0%	83	36.1%	26	38.4%	benign(0.021)	tolerated(0.85)	neutral(0.002)	HMMPfam_Cohesin_load,superfamily_TPR-like
ZNF14	7561	genome.wustl.edu	37	19	19822367	19822367	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021030.2	-1	reviewed	p.R575*	0.000	120	0%	58	44.8%	10	30%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF253	56242	genome.wustl.edu	37	19	20003321	20003321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021047.2	+1	provisional	p.K422R	0.825	81	0%	56	12.5%	16	6.2%	possibly_damaging(0.477)	tolerated(0.09)	neutral(0.454)	superfamily_C2H2 and C2HC zinc fingers
LOC100128975	100128975	genome.wustl.edu	37	19	20048609	20048609	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001719745.1	-1	model	p.E58*	0.228	71	0%	47	23.4%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF682	91120	genome.wustl.edu	37	19	20117004	20117004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033196.2	-1	validated	p.R436Q	0.000	177	0%	208	32.2%	10	50%	probably_damaging(0.997)	tolerated(0.33)	deleterious(0.490)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF90	7643	genome.wustl.edu	37	19	20228942	20228942	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007138.1	+1	validated	p.K193N	0.597	105	0%	76	25%	2	100%	possibly_damaging(0.518)	tolerated(0.18)	neutral(0.230)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF90	7643	genome.wustl.edu	37	19	20230161	20230161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007138.1	+1	validated	p.N600H	0.983	41	0%	36	33.3%	4	50%	possibly_damaging(0.795)	tolerated(0.07)	deleterious(0.617)	NULL
ZNF486	90649	genome.wustl.edu	37	19	20308712	20308712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052852.2	+1	provisional	p.R398I	0.998	54	0%	44	27.3%	3	0%	benign(0.113)	tolerated(0.16)	neutral(0.068)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF85	7639	genome.wustl.edu	37	19	21132234	21132234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003429.3	+1	validated	p.R305I	0.098	46	0%	68	26.5%	5	0%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF85	7639	genome.wustl.edu	37	19	21132744	21132744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003429.3	+1	validated	p.S475I	0.663	46	0%	103	29.1%	5	60%	benign(0)	tolerated(1)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF430	80264	genome.wustl.edu	37	19	21239487	21239487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025189.3	+1	validated	p.D125Y	0.030	111	0.9%	128	28.9%	4	0%	benign(0.084)	deleterious(0.02)	neutral(0.389)	NULL
ZNF431	170959	genome.wustl.edu	37	19	21366281	21366281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133473.2	+1	validated	p.R392I	1.000	35	0%	31	35.5%	5	40%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF429	353088	genome.wustl.edu	37	19	21719853	21719853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001415.2	+1	provisional	p.R333K	0.998	45	0%	45	35.6%	6	50%	benign(0.005)	tolerated(0.39)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22154790	22154790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007153.3	-1	provisional	p.L888I	0.020	203	0%	74	29.7%	0	-	benign(0.055)	deleterious(0.01)	neutral(0.409)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22271092	22271092	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033468.2	+1	provisional	p.K180N	0.016	123	0%	75	33.3%	0	-	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF257	113835	genome.wustl.edu	37	19	22271205	22271205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033468.2	+1	provisional	p.R218Q	0.000	85	0%	38	10.5%	0	-	benign(0.049)	tolerated(1)	neutral(0.003)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF257	113835	genome.wustl.edu	37	19	22271743	22271743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033468.2	+1	provisional	p.E397D	1.000	123	0%	83	22.9%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
ZNF676	163223	genome.wustl.edu	37	19	22363483	22363483	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001411.2	-1	provisional	p.F346V	0.432	155	0%	75	16%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100287226	100287226	genome.wustl.edu	37	19	22496929	22496929	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343636.1	+1	model	p.K104T	0.056	22	0%	23	26.1%	0	-	possibly_damaging(0.763)	tolerated(0.13)	deleterious(0.535)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497517	22497517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343636.1	+1	model	p.K300T	0.041	28	0%	37	32.4%	0	-	benign(0.191)	tolerated(0.1)	neutral(0.304)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22497563	22497563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343636.1	+1	model	p.M315I	0.000	33	0%	40	17.5%	0	-	benign(0.007)	tolerated(0.56)	neutral(0.006)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498029	22498029	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343636.1	+1	model	p.E471*	0.023	36	0%	41	36.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498268	22498268	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343636.1	+1	model	p.P550	0.157	52	0%	50	36%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498953	22498953	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343636.1	+1	model	p.E779*	0.144	49	0%	43	23.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22499217	22499217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343636.1	+1	model	p.D867Y	0.008	87	0%	119	46.2%	0	-	benign(0.148)	deleterious(0)	neutral(0.458)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574928	22574928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098626.1	-1	validated	p.R370I	0.994	128	0%	57	21.1%	0	-	benign(0.038)	tolerated(0.29)	neutral(0.031)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22575432	22575432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098626.1	-1	validated	p.R202I	0.931	156	0%	99	27.3%	0	-	benign(0.032)	tolerated(0.13)	neutral(0.254)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22586279	22586279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098626.1	-1	validated	p.F22L	0.013	345	0%	235	37.9%	0	-	possibly_damaging(0.571)	deleterious(0.04)	deleterious(0.544)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC440518	440518	genome.wustl.edu	37	19	22780141	22780141	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_041921.2	+1	model	NULL	0.230	35	0%	65	38.5%	0	-	-	-	-	-
ZNF99	7652	genome.wustl.edu	37	19	22939303	22939303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080409.1	-1	provisional	p.F956L	0.000	72	0%	55	14.5%	0	-	possibly_damaging(0.799)	tolerated(0.68)	neutral(0.303)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22951177	22951177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080409.1	-1	provisional	p.L73F	0.002	221	0%	105	11.4%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
LOC646864	646864	genome.wustl.edu	37	19	23039970	23039970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726885.1	+1	model	p.D122Y	0.419	78	0%	45	26.7%	0	-	-	-	-	NULL
LOC646864	646864	genome.wustl.edu	37	19	23039982	23039982	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726885.1	+1	model	p.K126*	0.002	81	0%	46	34.8%	0	-	-	-	-	NULL
LOC646864	646864	genome.wustl.edu	37	19	23040259	23040259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726885.1	+1	model	p.T218N	0.000	71	0%	45	15.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC646864	646864	genome.wustl.edu	37	19	23040920	23040920	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726885.1	+1	model	p.S438	0.000	23	0%	27	40.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23159063	23159063	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726961.1	-1	model	p.K359T	0.976	42	0%	19	47.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF728	388523	genome.wustl.edu	37	19	23159144	23159144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001726961.1	-1	model	p.R332I	1.000	39	0%	31	41.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23543496	23543496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003430.2	-1	validated	p.R762I	0.691	119	0.8%	167	29.9%	6	33.3%	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF91	7644	genome.wustl.edu	37	19	23544840	23544840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003430.2	-1	validated	p.R314I	0.050	107	0%	138	31.9%	4	0%	benign(0.02)	tolerated(0.33)	neutral(0.025)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23837031	23837031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138330.2	-1	validated	p.R235I	0.961	128	0%	91	13.2%	3	0%	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
ZNF681	148213	genome.wustl.edu	37	19	23938289	23938289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138286.2	-1	validated	p.T23N	0.033	178	0%	231	29.4%	0	-	possibly_damaging(0.904)	deleterious(0.02)	deleterious(0.742)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF726	730087	genome.wustl.edu	37	19	24116384	24116384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000322487	+1	known	p.A489V	0.900	41	0%	46	32.6%	1	100%	possibly_damaging(0.687)	tolerated(0.08)	deleterious(0.545)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24309741	24309741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203282.2	+1	validated	p.K313N	0.924	101	0%	51	31.4%	16	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310163	24310163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203282.2	+1	validated	p.R454I	0.998	82	0%	62	30.6%	10	60%	unknown(0)	tolerated(0.19)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF254	9534	genome.wustl.edu	37	19	24310547	24310547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203282.2	+1	validated	p.S582Y	0.961	57	0%	38	15.8%	13	23%	possibly_damaging(0.733)	deleterious(0)	deleterious(0.713)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSHZ3	57616	genome.wustl.edu	37	19	31767827	31767827	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020856.2	-1	validated	p.R958*	0.892	94	0%	74	24.3%	4	0%	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
TSHZ3	57616	genome.wustl.edu	37	19	31770245	31770245	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020856.2	-1	validated	p.S152R	1.000	109	0%	114	39.5%	2	0%	possibly_damaging(0.934)	tolerated(0.07)	deleterious(0.699)	NULL
ZNF507	22847	genome.wustl.edu	37	19	32845405	32845405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136156.1	+1	validated	p.L557F	0.949	60	0%	93	22.6%	8	50%	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
PDCD5	9141	genome.wustl.edu	37	19	33076802	33076802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004708.2	+1	reviewed	p.L83I	0.990	122	0%	174	35.1%	173	43.9%	benign(0.184)	tolerated(0.9)	neutral(0.017)	HMMPfam_dsDNA_bind,superfamily_Hypothetical protein MTH1615
PDCD5	9141	genome.wustl.edu	37	19	33076883	33076883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000419343	+1	known	p.L110M	0.001	73	0%	90	31.1%	6	33.3%	possibly_damaging(0.947)	deleterious(0.02)	deleterious(0.774)	HMMPfam_dsDNA_bind
TDRD12	91646	genome.wustl.edu	37	19	33240745	33240745	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001110822.1	+1	validated	p.V184	1.000	220	0%	137	35%	0	-	-	-	-	NULL
SLC7A9	11136	genome.wustl.edu	37	19	33324081	33324081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001126335.1	-1	reviewed	p.K458T	1.000	99	0%	115	29.6%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_AA_permease
CEP89	84902	genome.wustl.edu	37	19	33422436	33422436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032816.3	-1	validated	p.E310*	1.000	126	0%	121	34.7%	7	42.8%	-	-	-	NULL
CEP89	84902	genome.wustl.edu	37	19	33450945	33450945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032816.3	-1	validated	p.I56V	1.000	50	0%	57	29.8%	7	71.4%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
CEP89	84902	genome.wustl.edu	37	19	33462777	33462777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032816.3	-1	validated	p.L2I	0.702	48	0%	62	40.3%	13	30.7%	possibly_damaging(0.477)	tolerated(0.15)	neutral(0.398)	NULL
RHPN2	85415	genome.wustl.edu	37	19	33503594	33503594	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033103.4	-1	reviewed	p.L143V	0.297	130	0%	149	26.8%	15	26.6%	benign(0.291)	tolerated(0.28)	neutral(0.121)	HMMPfam_BRO1
GPATCH1	55094	genome.wustl.edu	37	19	33584313	33584313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018025.2	+1	provisional	p.D115N	1.000	104	0%	84	19%	7	42.8%	benign(0.02)	tolerated(0.18)	neutral(0.057)	HMMPfam_DUF1604
GPI	2821	genome.wustl.edu	37	19	34859597	34859597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000175.3	+1	reviewed	p.S131Y	0.051	83	0%	146	31.5%	995	42.5%	benign(0.072)	deleterious(0.01)	neutral(0.411)	HMMPfam_PGI,superfamily_SSF53697
GPI	2821	genome.wustl.edu	37	19	34890640	34890640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000175.3	+1	reviewed	p.K497N	1.000	182	0%	211	28.9%	1448	47.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PGI,superfamily_SSF53697
PDCD2L	84306	genome.wustl.edu	37	19	34916906	34916906	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032346.1	+1	provisional	p.E320*	1.000	205	0%	313	33.2%	22	50%	-	-	-	HMMPfam_PDCD2_C
UBA2	10054	genome.wustl.edu	37	19	34960072	34960072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005499.2	+1	validated	p.K623N	1.000	87	0%	96	31.2%	103	38.8%	possibly_damaging(0.767)	deleterious(0.01)	deleterious(0.690)	NULL
ZNF181	339318	genome.wustl.edu	37	19	35231856	35231856	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029997.3	+1	validated	p.K190	0.005	81	0%	50	26%	1	100%	-	-	-	NULL
ZNF181	339318	genome.wustl.edu	37	19	35232240	35232240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029997.3	+1	validated	p.E318D	1.000	119	0%	111	36%	5	20%	possibly_damaging(0.462)	deleterious(0.01)	deleterious(0.557)	HMMSmart_SM00614,superfamily_C2H2 and C2HC zinc fingers
ZNF599	148103	genome.wustl.edu	37	19	35250136	35250136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007248.2	-1	validated	p.R524W	0.000	202	0%	123	23.6%	0	-	probably_damaging(0.972)	tolerated(0.06)	deleterious(0.736)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF599	148103	genome.wustl.edu	37	19	35250309	35250309	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001007248.2	-1	validated	p.F466C	0.067	161	0%	83	20.5%	2	50%	possibly_damaging(0.499)	deleterious(0.01)	deleterious(0.572)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35449873	35449873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175872.4	-1	validated	p.D296Y	0.000	174	0%	215	39.5%	0	-	benign(0.411)	deleterious(0.03)	deleterious(0.497)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HPN	3249	genome.wustl.edu	37	19	35556498	35556498	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002151.2	+1	reviewed	p.V321	0.944	67	0%	72	33.3%	35	57.1%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MAG	4099	genome.wustl.edu	37	19	35804235	35804235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002361.2	+1	reviewed	p.R587W	0.982	81	0%	94	27.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CD22	933	genome.wustl.edu	37	19	35837080	35837080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001771.3	+1	validated	p.R785I	0.000	56	0%	116	25%	6	0%	benign(0.043)	-	-	NULL
FFAR2	2867	genome.wustl.edu	37	19	35940983	35940983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005306.2	+1	reviewed	p.P123S	1.000	101	0%	99	21.2%	1	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_7tm_1,superfamily_SSF81321
GAPDHS	26330	genome.wustl.edu	37	19	36033849	36033849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014364.4	+1	reviewed	p.N221S	1.000	79	0%	130	21.5%	19	26.3%	benign(0.075)	deleterious(0)	neutral(0.450)	HMMPfam_Gp_dh_N,superfamily_NAD(P)-bd
HAUS5	23354	genome.wustl.edu	37	19	36111148	36111148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015302.1	+1	validated	p.L524I	0.990	25	0%	31	25.8%	18	33.3%	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
MLL4	9757	genome.wustl.edu	37	19	36222961	36222961	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014727.1	+1	reviewed	p.R1864*	1.000	40	0%	85	28.2%	23	39.1%	-	-	-	NULL
IGFLR1	79713	genome.wustl.edu	37	19	36230495	36230495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024660.2	-1	provisional	p.R252C	0.950	22	0%	56	44.6%	76	15.7%	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	NULL
ENSG00000247203	0	genome.wustl.edu	37	19	36244173	36244173	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000501632	-1	novel	NULL	0.000	26	0%	37	29.7%	4	75%	-	-	-	-
NPHS1	4868	genome.wustl.edu	37	19	36341869	36341869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004646.3	-1	reviewed	p.L174I	0.628	45	0%	85	30.6%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
KIRREL2	84063	genome.wustl.edu	37	19	36351207	36351207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199180.2	+1	validated	p.E228K	0.998	52	0%	109	31.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_I-set,superfamily_Immunoglobulin
APLP1	333	genome.wustl.edu	37	19	36370282	36370282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024807.1	+1	reviewed	p.R632H	0.978	93	0%	135	28.9%	112	43.7%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_APP_amyloid
ALKBH6	84964	genome.wustl.edu	37	19	36503959	36503959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032878.3	-1	validated	p.F57L	1.000	152	0%	234	37.6%	23	34.7%	-	-	-	NULL
ZNF146	7705	genome.wustl.edu	37	19	36727465	36727465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099638.1	+1	validated	p.E41D	1.000	88	0%	100	33%	50	28%	benign(0.207)	deleterious(0.03)	neutral(0.385)	superfamily_C2H2 and C2HC zinc fingers
ZNF146	7705	genome.wustl.edu	37	19	36727547	36727547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099638.1	+1	validated	p.E69K	1.000	110	0%	86	27.9%	69	53.6%	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_C2H2 and C2HC zinc fingers
ZNF146	7705	genome.wustl.edu	37	19	36727979	36727979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099638.1	+1	validated	p.E213K	0.994	173	0%	179	27.4%	89	49.4%	benign(0.002)	tolerated(0.45)	neutral(0.012)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC644189	644189	genome.wustl.edu	37	19	36913483	36913483	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_016949.3	+1	model	NULL	0.753	70	0%	95	30.5%	0	-	-	-	-	-
ZNF260	339324	genome.wustl.edu	37	19	37005188	37005188	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012756.2	-1	validated	p.S318*	0.001	185	0%	164	31.1%	14	14.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF461	92283	genome.wustl.edu	37	19	37130229	37130229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153257.2	-1	validated	p.R340C	0.003	173	0%	91	26.4%	8	75%	benign(0.022)	tolerated(0.32)	neutral(0.025)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF461	92283	genome.wustl.edu	37	19	37130607	37130607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153257.2	-1	validated	p.H214N	0.037	167	0%	97	40.2%	6	33.3%	benign(0.001)	deleterious(0)	neutral(0.445)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF567	163081	genome.wustl.edu	37	19	37210696	37210696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152603.2	+1	provisional	p.R326I	0.998	83	0%	44	27.3%	10	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF567	163081	genome.wustl.edu	37	19	37211050	37211050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152603.2	+1	provisional	p.K444I	1.000	93	0%	64	28.1%	13	30.7%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	superfamily_SSF57667
ZNF790	388536	genome.wustl.edu	37	19	37310341	37310341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_206894.2	-1	validated	p.R302I	0.963	71	0%	53	32.1%	3	33.3%	possibly_damaging(0.78)	tolerated(0.09)	deleterious(0.588)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF345	25850	genome.wustl.edu	37	19	37368061	37368061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003419.3	+1	provisional	p.R110I	1.000	144	0%	69	33.3%	6	83.3%	benign(0.023)	deleterious(0)	neutral(0.446)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF345	25850	genome.wustl.edu	37	19	37368703	37368703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003419.3	+1	provisional	p.R324I	0.636	114	0%	90	33.3%	10	40%	benign(0.008)	tolerated(0.28)	neutral(0.032)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF568	374900	genome.wustl.edu	37	19	37441104	37441104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198539.2	+1	validated	p.I350T	0.053	98	0%	83	12%	8	25%	benign(0.003)	tolerated(0.31)	neutral(0.027)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF568	374900	genome.wustl.edu	37	19	37441526	37441526	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198539.2	+1	validated	p.R491*	0.000	95	0%	64	31.2%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37619513	37619513	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144689.3	+1	provisional	p.F540	0.566	111	0%	65	16.9%	14	14.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF420	147923	genome.wustl.edu	37	19	37619881	37619881	+	Missense_Mutation	SNP	G	G	T	rs140027212	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144689.3	+1	provisional	p.R663I	1.000	124	0%	61	21.3%	6	16.6%	possibly_damaging(0.904)	tolerated(0.17)	neutral(0.417)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585A	199704	genome.wustl.edu	37	19	37643575	37643575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152655.2	-1	validated	p.S354L	0.176	163	0.6%	103	20.4%	1	0%	benign(0)	tolerated(0.07)	neutral(0.319)	superfamily_C2H2 and C2HC zinc fingers
ZNF585B	92285	genome.wustl.edu	37	19	37676469	37676469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152279.3	-1	validated	p.T657N	0.999	161	0%	71	25.4%	3	66.6%	possibly_damaging(0.886)	deleterious(0.02)	deleterious(0.730)	superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37676898	37676898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152279.3	-1	validated	p.R514K	0.991	179	0%	110	11.8%	7	28.5%	benign(0.422)	tolerated(0.1)	neutral(0.423)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677386	37677386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152279.3	-1	validated	p.E351D	1.000	232	0%	113	32.7%	2	0%	possibly_damaging(0.576)	deleterious(0.04)	deleterious(0.546)	superfamily_SSF57667
ZNF383	163087	genome.wustl.edu	37	19	37733430	37733430	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152604.1	+1	provisional	p.E98*	1.000	74	0%	54	24.1%	8	12.5%	-	-	-	NULL
ZNF569	148266	genome.wustl.edu	37	19	37903536	37903536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152484.2	-1	validated	p.S675L	0.034	102	0%	83	34.9%	6	33.3%	possibly_damaging(0.92)	deleterious(0.01)	deleterious(0.776)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF569	148266	genome.wustl.edu	37	19	37905206	37905206	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152484.2	-1	validated	p.K118N	0.000	118	0%	86	32.6%	1	100%	benign(0.071)	tolerated(0.49)	neutral(0.015)	NULL
ZNF570	148268	genome.wustl.edu	37	19	37975523	37975523	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144694.1	+1	provisional	p.I333	0.000	115	0%	63	46%	7	28.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38102669	38102669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152606.3	+1	validated	p.R163I	0.038	73	0%	51	41.2%	1	0%	possibly_damaging(0.598)	tolerated(0.22)	neutral(0.249)	NULL
ZNF540	163255	genome.wustl.edu	37	19	38103053	38103053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152606.3	+1	validated	p.R291I	0.989	66	0%	40	37.5%	0	-	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP30	22835	genome.wustl.edu	37	19	38126687	38126687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014898.2	-1	validated	p.R252I	0.000	148	0%	109	11%	5	40%	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF781	163115	genome.wustl.edu	37	19	38160221	38160221	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152605.3	-1	validated	p.E277*	0.970	188	0%	123	39%	0	-	-	-	-	NULL
ZNF781	163115	genome.wustl.edu	37	19	38160314	38160314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152605.3	-1	validated	p.D246Y	0.000	130	0%	118	24.6%	2	100%	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	NULL
ZNF573	126231	genome.wustl.edu	37	19	38229625	38229625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152360.3	-1	validated	p.K531T	0.848	153	0%	59	11.9%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR87	83889	genome.wustl.edu	37	19	38375841	38375841	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031951.3	-1	provisional	p.E2785*	0.022	54	0%	25	32%	0	-	-	-	-	NULL
WDR87	83889	genome.wustl.edu	37	19	38379402	38379402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031951.3	-1	provisional	p.E1598K	0.837	339	0%	289	31.8%	0	-	probably_damaging(0.967)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38385931	38385931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031951.3	-1	provisional	p.R99W	0.994	125	0%	99	12.1%	0	-	benign(0.312)	-	-	superfamily_WD40 repeat-like
CATSPERG	57828	genome.wustl.edu	37	19	38858147	38858147	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021185.4	+1	validated	e23-2	0.674	324	0%	479	29.4%	0	-	-	-	-	-
FAM98C	147965	genome.wustl.edu	37	19	38895721	38895721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174905.3	+1	validated	p.A175T	0.940	45	0%	60	35%	39	48.7%	probably_damaging(0.999)	tolerated(0.31)	deleterious(0.517)	HMMPfam_DUF2465
RYR1	6261	genome.wustl.edu	37	19	38931452	38931452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.A38D	0.875	12	0%	19	26.3%	0	-	benign(0.268)	-	-	HMMPfam_Ins145_P3_rec
RYR1	6261	genome.wustl.edu	37	19	38965976	38965976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.K1393N	1.000	31	0%	80	41.2%	0	-	benign(0.24)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38979835	38979835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.D1856N	0.989	107	0%	236	26.7%	2	0%	benign(0.092)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38979900	38979900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.E1877D	0.960	124	0%	216	33.8%	2	100%	possibly_damaging(0.649)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38981285	38981285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.D2014Y	0.994	106	0%	195	32.8%	0	-	possibly_damaging(0.739)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38991310	38991310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.L2463S	1.000	30	0%	59	23.7%	0	-	probably_damaging(0.975)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38991552	38991552	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.I2512	0.676	51	0%	96	27.1%	0	-	-	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38994992	38994992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.A2687S	1.000	97	0%	200	32.5%	0	-	benign(0.027)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39001403	39001403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.E3035G	1.000	126	0%	194	37.1%	0	-	probably_damaging(0.999)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39051813	39051813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.E4115K	1.000	26	0%	57	12.3%	0	-	probably_damaging(0.982)	-	-	superfamily_EF-hand
RYR1	6261	genome.wustl.edu	37	19	39075642	39075642	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.I4902	0.820	246	0%	371	24%	2	0%	-	-	-	HMMPfam_Ion_trans
RYR1	6261	genome.wustl.edu	37	19	39077996	39077996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000540.2	+1	reviewed	p.R5018I	1.000	105	0%	180	30%	4	0%	unknown(0)	-	-	NULL
EIF3K	27335	genome.wustl.edu	37	19	39116687	39116687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013234.2	+1	validated	p.R100Q	1.000	104	0%	134	31.3%	552	38.4%	possibly_damaging(0.47)	tolerated(0.62)	neutral(0.159)	HMMPfam_SAC3_GANP,superfamily_ARM repeat
IL28B	282617	genome.wustl.edu	37	19	39734508	39734508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172139.2	-1	reviewed	p.R150C	0.369	89	0%	117	36.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IL28A	282616	genome.wustl.edu	37	19	39759834	39759834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172138.1	+1	reviewed	p.L79I	0.342	58	0%	104	27.9%	0	-	benign(0.008)	tolerated(0.08)	neutral(0.300)	NULL
PAF1	54623	genome.wustl.edu	37	19	39879245	39879245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019088.2	-1	provisional	p.R271Q	1.000	272	0%	408	30.1%	92	50%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	HMMPfam_Paf1
PLEKHG2	64857	genome.wustl.edu	37	19	39909596	39909596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022835.2	+1	validated	p.L406I	1.000	57	0%	92	39.1%	4	0%	possibly_damaging(0.796)	tolerated(0.18)	neutral(0.355)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RPS16	6217	genome.wustl.edu	37	19	39924389	39924389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001020.4	-1	reviewed	p.V55I	1.000	75	0%	136	25.7%	4324	36.9%	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_Ribosomal_S9,superfamily_Ribosomal protein S5 domain 2-like
SUPT5H	6829	genome.wustl.edu	37	19	39964892	39964892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001111020.2	+1	validated	p.F890L	1.000	171	0%	275	34.9%	161	40.3%	benign(0.177)	tolerated(0.47)	neutral(0.028)	NULL
LGALS13	29124	genome.wustl.edu	37	19	40097886	40097886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013268.2	+1	reviewed	p.I109M	0.001	139	0%	106	27.4%	0	-	possibly_damaging(0.848)	deleterious(0.05)	deleterious(0.671)	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
LGALS14	56891	genome.wustl.edu	37	19	40197270	40197270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203471.1	+1	reviewed	p.G46C	0.008	101	0%	56	35.7%	0	-	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
DYRK1B	9149	genome.wustl.edu	37	19	40321165	40321165	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004714.1	-1	reviewed	p.A74	0.384	81	0%	129	31%	51	47%	-	-	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40354344	40354344	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003890.2	-1	validated	p.F5375L	1.000	143	0%	142	28.9%	21	47.6%	probably_damaging(0.97)	tolerated(0.06)	deleterious(0.735)	HMMPfam_VWD,HMMSmart_VWD
LOC100289588	100289588	genome.wustl.edu	37	19	40362776	40362776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343681.1	+1	model	p.R82C	0.000	6	0.000	25	0.360	21	33.3%	-	-	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40368749	40368749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003890.2	-1	validated	p.R4200Q	0.130	152	0%	289	21.8%	18	66.6%	unknown(0)	tolerated(0.39)	-	HMMPfam_VWD,HMMSmart_VWD
PSMC4	5704	genome.wustl.edu	37	19	40478338	40478338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006503.2	+1	reviewed	p.K66N	1.000	76	0%	105	34.3%	89	46%	benign(0.058)	deleterious(0)	neutral(0.448)	NULL
ZNF546	339327	genome.wustl.edu	37	19	40520025	40520025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178544.3	+1	validated	p.R283I	0.165	165	0%	78	28.2%	0	-	possibly_damaging(0.85)	tolerated(0.49)	neutral(0.338)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF546	339327	genome.wustl.edu	37	19	40520174	40520174	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178544.3	+1	validated	p.E333*	0.339	150	0%	72	31.9%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF546	339327	genome.wustl.edu	37	19	40520930	40520930	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178544.3	+1	validated	p.E585*	0.467	82	0%	32	34.4%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF780A	284323	genome.wustl.edu	37	19	40580618	40580618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142577.1	-1	validated	p.K578N	0.991	184	0%	109	14.7%	8	12.5%	benign(0.153)	tolerated(0.26)	neutral(0.048)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40580734	40580734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142577.1	-1	validated	p.R540C	0.000	151	0%	85	31.8%	3	66.6%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAP3K10	4294	genome.wustl.edu	37	19	40710395	40710395	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002446.3	+1	reviewed	p.F289	0.998	31	0%	37	35.1%	7	14.2%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
HIPK4	147746	genome.wustl.edu	37	19	40889827	40889827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144685.3	-1	provisional	p.E229K	0.996	84	1.2%	132	31.8%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HIPK4	147746	genome.wustl.edu	37	19	40895651	40895651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144685.3	-1	provisional	p.K53N	1.000	72	0%	140	26.4%	0	-	probably_damaging(0.959)	tolerated(0.2)	neutral(0.452)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PRX	57716	genome.wustl.edu	37	19	40901778	40901778	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181882.2	-1	reviewed	p.V827	0.000	74	0%	129	38.8%	4	75%	-	-	-	NULL
PRX	57716	genome.wustl.edu	37	19	40903149	40903149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181882.2	-1	reviewed	p.K370N	1.000	19	0%	40	40%	1	100%	probably_damaging(0.995)	tolerated(0.11)	deleterious(0.729)	NULL
SERTAD3	29946	genome.wustl.edu	37	19	40947449	40947449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013368.3	-1	reviewed	p.S180Y	0.040	111	0%	199	30.7%	20	40%	possibly_damaging(0.449)	deleterious(0.01)	deleterious(0.552)	NULL
SPTBN4	57731	genome.wustl.edu	37	19	41009850	41009850	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020971.2	+1	reviewed	p.A492	0.954	39	0%	68	22.1%	3	66.6%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN4	57731	genome.wustl.edu	37	19	41072126	41072126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020971.2	+1	reviewed	p.A2066V	1.000	21	0%	76	35.5%	4	75%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EGLN2	112398	genome.wustl.edu	37	19	41312511	41312511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053046.2	+1	reviewed	p.D299Y	1.000	70	0%	128	34.4%	215	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
CYP2B6	1555	genome.wustl.edu	37	19	41518311	41518311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000767.4	+1	reviewed	p.R358I	1.000	119	0%	108	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
AXL	558	genome.wustl.edu	37	19	41745079	41745079	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021913.3	+1	reviewed	p.D382G	0.980	73	0%	101	36.6%	7	0%	possibly_damaging(0.46)	tolerated(0.23)	neutral(0.193)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
AXL	558	genome.wustl.edu	37	19	41763475	41763475	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021913.3	+1	reviewed	p.I758M	1.000	60	0%	88	26.1%	9	0%	probably_damaging(0.998)	tolerated(0.29)	deleterious(0.503)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
HNRNPUL1	11100	genome.wustl.edu	37	19	41798347	41798347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007040.3	+1	reviewed	p.F399L	1.000	140	0%	124	33.1%	373	46.3%	benign(0.011)	tolerated(0.56)	neutral(0.007)	NULL
TGFB1	7040	genome.wustl.edu	37	19	41850691	41850691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000660.4	-1	reviewed	p.D199Y	1.000	57	0%	93	29%	79	1.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TGFb_propeptide
TMEM91	641649	genome.wustl.edu	37	19	41884239	41884239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098821.1	+1	validated	p.L9I	0.109	51	0%	91	36.3%	10	20%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
CEACAM4	1089	genome.wustl.edu	37	19	42132206	42132206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001817.2	-1	validated	p.Y65D	0.003	145	0%	112	33.9%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CEACAM6	4680	genome.wustl.edu	37	19	42265297	42265297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002483.4	+1	validated	p.P189S	0.004	165	0%	197	32%	1	0%	benign(0.002)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DMRTC2	63946	genome.wustl.edu	37	19	42351574	42351574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040283.1	+1	validated	p.Q26H	0.974	34	0%	44	22.7%	0	-	possibly_damaging(0.809)	tolerated(0.14)	deleterious(0.554)	NULL
ATP1A3	478	genome.wustl.edu	37	19	42470978	42470978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441343	-1	known	p.P1146S	0.854	44	0%	68	30.9%	1	0%	unknown(0)	-	-	NULL
ATP1A3	478	genome.wustl.edu	37	19	42471139	42471139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441343	-1	known	p.S1092Y	0.761	111	0%	215	40%	0	-	unknown(0)	-	-	NULL
ATP1A3	478	genome.wustl.edu	37	19	42471415	42471415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152296.3	-1	reviewed	p.R1000H	1.000	39	0%	55	27.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81665
GRIK5	2901	genome.wustl.edu	37	19	42526170	42526170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002088.3	-1	reviewed	p.F542L	1.000	107	0%	106	30.2%	0	-	possibly_damaging(0.625)	tolerated(1)	neutral(0.218)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
POU2F2	5452	genome.wustl.edu	37	19	42626525	42626525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002698.2	-1	validated	p.E34K	0.996	193	0%	275	30.9%	4	0%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42840323	42840323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001410.2	+1	validated	p.D357N	1.000	126	0%	216	31.5%	7	28.5%	probably_damaging(0.999)	tolerated(0.59)	deleterious(0.495)	superfamily_Gal_oxid_central
MEGF8	1954	genome.wustl.edu	37	19	42874479	42874479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001410.2	+1	validated	p.E2258K	1.000	51	0%	136	16.9%	24	37.5%	benign(0.242)	tolerated(0.3)	neutral(0.053)	NULL
LIPE	3991	genome.wustl.edu	37	19	42907110	42907110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005357.2	-1	reviewed	p.K872N	0.876	36	0%	89	31.5%	12	41.6%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
LIPE	3991	genome.wustl.edu	37	19	42911501	42911501	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005357.2	-1	reviewed	p.G654	0.998	36	0%	43	20.9%	9	22.2%	-	-	-	PatternScan_LIPASE_GDXG_HIS,HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
PSG3	5671	genome.wustl.edu	37	19	43233351	43233351	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021016.3	-1	validated	p.S389	0.001	261	0%	119	33.6%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
PSG8	440533	genome.wustl.edu	37	19	43258479	43258479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182707.2	-1	validated	p.R417W	0.003	246	0%	135	31.9%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
PSG7	5676	genome.wustl.edu	37	19	43430673	43430673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002783.2	-1	reviewed	p.R302I	0.255	265	0.4%	154	29.9%	0	-	possibly_damaging(0.833)	tolerated(0.4)	neutral(0.334)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG7	5676	genome.wustl.edu	37	19	43430782	43430782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002783.2	-1	reviewed	p.S266R	0.001	301	0%	256	23%	0	-	probably_damaging(0.961)	deleterious(0.05)	deleterious(0.750)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG7	5676	genome.wustl.edu	37	19	43439685	43439685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002783.2	-1	reviewed	p.V101L	0.010	373	0%	197	33.5%	0	-	benign(0.022)	tolerated(0.45)	neutral(0.013)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PSG11	5680	genome.wustl.edu	37	19	43528850	43528850	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002785.2	-1	validated	p.T141	0.225	254	0%	182	28%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
PSG2	5670	genome.wustl.edu	37	19	43575983	43575983	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031246.2	-1	validated	p.K278T	0.000	275	0%	163	33.1%	0	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
PHLDB3	653583	genome.wustl.edu	37	19	43983532	43983532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198850.3	-1	validated	p.A567T	0.597	18	0%	39	30.8%	8	50%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SRRM5	100170229	genome.wustl.edu	37	19	44117635	44117635	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145641.1	+1	validated	p.S454	0.000	140	1.4%	207	32.9%	6	50%	-	-	-	NULL
ZNF283	284349	genome.wustl.edu	37	19	44351796	44351796	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181845.1	+1	validated	p.K348T	0.086	144	0%	119	28.6%	2	0%	probably_damaging(0.96)	deleterious(0.03)	deleterious(0.768)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF404	342908	genome.wustl.edu	37	19	44376906	44376906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033719.2	-1	validated	p.R487I	1.000	113	0%	87	28.7%	1	100%	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF404	342908	genome.wustl.edu	37	19	44378010	44378010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001033719.2	-1	validated	p.P119H	0.312	143	0%	134	31.3%	0	-	benign(0.09)	tolerated(0.27)	neutral(0.040)	superfamily_C2H2 and C2HC zinc fingers
ZNF155	7711	genome.wustl.edu	37	19	44500533	44500533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003445.2	+1	validated	p.S175Y	0.366	162	0%	79	36.7%	7	42.8%	possibly_damaging(0.936)	tolerated(0.44)	neutral(0.394)	superfamily_C2H2 and C2HC zinc fingers
ZNF230	7773	genome.wustl.edu	37	19	44514614	44514614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006300.3	+1	validated	p.Q141H	0.002	147	0%	72	25%	3	33.3%	possibly_damaging(0.819)	tolerated(0.5)	neutral(0.320)	superfamily_SSF57667
ZNF223	7766	genome.wustl.edu	37	19	44570346	44570346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013361.4	+1	validated	p.S122Y	0.031	83	0%	51	31.4%	0	-	probably_damaging(0.964)	tolerated(1)	neutral(0.406)	NULL
ZNF284	342909	genome.wustl.edu	37	19	44591139	44591139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037813.2	+1	provisional	p.R503I	0.016	103	1.9%	95	29.5%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF226	7769	genome.wustl.edu	37	19	44681766	44681766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001032372.1	+1	validated	p.K784T	0.188	113	0%	103	29.1%	8	0%	possibly_damaging(0.78)	tolerated(0.06)	deleterious(0.614)	superfamily_SSF57667
ZNF229	7772	genome.wustl.edu	37	19	44932509	44932509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014518.2	-1	validated	p.R816I	0.358	108	0%	74	44.6%	0	-	probably_damaging(0.956)	tolerated(0.16)	neutral(0.459)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44932929	44932929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014518.2	-1	validated	p.R676Q	0.110	167	0%	79	20.3%	1	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44933584	44933584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014518.2	-1	validated	p.E458*	0.997	103	0%	47	31.9%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44980965	44980965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013256.3	-1	validated	p.E578A	0.952	192	0%	238	33.2%	7	42.8%	possibly_damaging(0.54)	tolerated(0.06)	deleterious(0.506)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF180	7733	genome.wustl.edu	37	19	44981244	44981244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013256.3	-1	validated	p.R485I	1.000	137	0%	195	28.2%	11	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PVRL2	5819	genome.wustl.edu	37	19	45368654	45368654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042724.1	+1	reviewed	p.R72H	0.398	38	0%	55	27.3%	148	40.5%	benign(0.028)	tolerated(0.24)	neutral(0.039)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TOMM40	10452	genome.wustl.edu	37	19	45406387	45406387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128916.1	+1	validated	p.K349N	1.000	55	0%	104	34.6%	192	43.2%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Porin_3
ZNF296	162979	genome.wustl.edu	37	19	45575703	45575703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145288.1	-1	provisional	p.P195L	0.994	24	0%	28	39.3%	3	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ERCC1	2067	genome.wustl.edu	37	19	45922416	45922416	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_202001.2	-1	reviewed	p.G155	0.906	100	0%	182	33.5%	52	34.6%	-	-	-	HMMPfam_Rad10
FOSB	2354	genome.wustl.edu	37	19	45974503	45974503	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006732.2	+1	reviewed	p.L167fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_2
RTN2	6253	genome.wustl.edu	37	19	45997558	45997558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005619.3	-1	reviewed	p.S227L	0.966	105	0%	201	33.3%	1	100%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
PPM1N	147699	genome.wustl.edu	37	19	46005330	46005330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080401.1	+1	provisional	p.D427G	0.005	77	0%	135	36.3%	0	-	possibly_damaging(0.936)	-	-	NULL
GPR4	2828	genome.wustl.edu	37	19	46094117	46094117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005282.2	-1	validated	p.K336N	0.003	95	0%	172	32.6%	7	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
GIPR	2696	genome.wustl.edu	37	19	46177957	46177957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000164.2	+1	validated	p.R169I	0.990	70	0%	134	25.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2
DMWD	1762	genome.wustl.edu	37	19	46289884	46289884	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004943.1	-1	validated	p.F290	0.772	24	0%	58	22.4%	26	46.1%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
SYMPK	8189	genome.wustl.edu	37	19	46326690	46326690	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004819.2	-1	reviewed	p.L880	0.972	63	0%	60	13.3%	74	6.7%	-	-	-	superfamily_ARM repeat
IGFL4	444882	genome.wustl.edu	37	19	46543156	46543156	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001002923.1	-1	provisional	p.L123	0.011	169	0.6%	179	22.9%	0	-	-	-	-	NULL
PPP5C	5536	genome.wustl.edu	37	19	46850470	46850470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006247.2	+1	provisional	p.F39L	1.000	24	0%	34	35.3%	53	32%	benign(0.065)	tolerated(0.28)	neutral(0.036)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
CCDC8	83987	genome.wustl.edu	37	19	46914828	46914828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032040.3	-1	validated	p.D414N	0.000	203	0%	312	31.1%	11	27.2%	unknown(0)	tolerated(1)	-	NULL
PTGIR	5739	genome.wustl.edu	37	19	47124858	47124858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000960.3	-1	reviewed	p.F280L	0.954	6	0.000	13	0.308	6	16.6%	possibly_damaging(0.833)	deleterious(0.02)	deleterious(0.701)	HMMPfam_7tm_1,superfamily_SSF81321
DACT3	147906	genome.wustl.edu	37	19	47151910	47151910	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145056.2	-1	validated	p.L573	0.997	20	0%	29	55.2%	2	0%	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47424921	47424921	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004491.4	+1	reviewed	p.R997*	1.000	54	0%	39	30.8%	5	40%	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47503717	47503717	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004491.4	+1	reviewed	p.I1424	1.000	167	0%	287	32.1%	16	25%	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
NPAS1	4861	genome.wustl.edu	37	19	47548520	47548520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002517.2	+1	reviewed	p.R462C	0.019	18	0%	35	42.9%	1	0%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
MEIS3	56917	genome.wustl.edu	37	19	47912789	47912789	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020160.1	-1	validated	p.R205*	0.979	49	0%	118	30.5%	3	0%	-	-	-	NULL
SLC8A2	6543	genome.wustl.edu	37	19	47969196	47969196	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015063.2	-1	validated	p.F155	1.000	25	0%	42	40.5%	0	-	-	-	-	HMMPfam_Na_Ca_ex
ZNF541	84215	genome.wustl.edu	37	19	48058989	48058989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101419.1	-1	validated	p.R42Q	0.008	62	0%	61	32.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SULT2A1	6822	genome.wustl.edu	37	19	48382311	48382311	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003167.3	-1	reviewed	p.S183	0.012	85	0%	72	37.5%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SULT2A1	6822	genome.wustl.edu	37	19	48386856	48386856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003167.3	-1	reviewed	p.S108Y	0.963	136	0%	119	18.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SULT2A1	6822	genome.wustl.edu	37	19	48387019	48387019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003167.3	-1	reviewed	p.L54I	0.289	94	0%	73	39.7%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
SULT2A1	6822	genome.wustl.edu	37	19	48389494	48389494	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003167.3	-1	reviewed	p.W7C	0.023	135	0%	86	24.4%	0	-	benign(0.034)	tolerated(0.12)	neutral(0.263)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BSPH1	100131137	genome.wustl.edu	37	19	48495307	48495307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128326.2	-1	validated	p.T11M	0.007	79	0%	85	31.8%	0	-	probably_damaging(0.999)	-	-	NULL
PLA2G4C	8605	genome.wustl.edu	37	19	48558146	48558146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003706.2	-1	reviewed	p.D473G	0.000	91	0%	62	22.6%	6	0%	possibly_damaging(0.84)	tolerated(0.08)	deleterious(0.621)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
CCDC114	93233	genome.wustl.edu	37	19	48809517	48809517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144577.3	-1	validated	p.V184I	0.150	140	0%	202	29.2%	0	-	benign(0.301)	deleterious(0.02)	deleterious(0.476)	NULL
TMEM143	55260	genome.wustl.edu	37	19	48836659	48836659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018273.2	-1	provisional	p.E399D	0.994	51	0%	65	40%	5	40%	benign(0.425)	deleterious(0.03)	deleterious(0.502)	NULL
SYNGR4	23546	genome.wustl.edu	37	19	48878882	48878882	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012451.2	+1	reviewed	p.V115G	0.003	94	0%	121	21.5%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_MARVEL
KCNJ14	3770	genome.wustl.edu	37	19	48967755	48967755	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013348.2	+1	reviewed	p.V344	0.413	91	0%	142	29.6%	6	50%	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
SULT2B1	6820	genome.wustl.edu	37	19	49096070	49096070	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_177973.1	+1	reviewed	p.Q214	0.532	45	0%	83	34.9%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TULP2	7288	genome.wustl.edu	37	19	49398408	49398408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003323.2	-1	validated	p.L121I	0.014	62	0%	104	25%	0	-	possibly_damaging(0.901)	tolerated(0.46)	neutral(0.369)	NULL
GYS1	2997	genome.wustl.edu	37	19	49481234	49481234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002103.4	-1	reviewed	p.M419V	1.000	96	0%	109	36.7%	65	47.6%	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_Glycogen_syn
CGB1	114335	genome.wustl.edu	37	19	49539005	49539005	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033377.1	-1	reviewed	p.L110	0.989	106	0%	128	21.9%	0	-	-	-	-	HMMSmart_GHB,HMMPfam_Cys_knot,PatternScan_GLYCO_HORMONE_BETA_2,superfamily_SSF57501
SLC6A16	28968	genome.wustl.edu	37	19	49812202	49812202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014037.2	-1	validated	p.V387A	0.001	70	0%	54	38.9%	1	0%	benign(0.009)	deleterious(0.01)	neutral(0.406)	HMMPfam_SNF
SLC6A16	28968	genome.wustl.edu	37	19	49813760	49813760	+	Silent	SNP	G	G	A	rs192727407	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014037.2	-1	validated	p.F141	0.062	61	0%	37	27%	4	25%	-	-	-	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1
TEAD2	8463	genome.wustl.edu	37	19	49845785	49845785	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003598.1	-1	provisional	p.C380	0.980	23	0%	82	36.6%	256	45.3%	-	-	-	HMMPfam_TEA
FLT3LG	2323	genome.wustl.edu	37	19	49979037	49979037	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001459.2	+1	validated	p.F41	0.624	73	0%	129	29.5%	11	45.4%	-	-	-	HMMPfam_Flt3_lig,superfamily_4-helical cytokines
NOSIP	51070	genome.wustl.edu	37	19	50063267	50063267	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015953.3	-1	provisional	p.R34*	1.000	82	0%	121	28.9%	87	3.4%	-	-	-	NULL
PRR12	57479	genome.wustl.edu	37	19	50124860	50124860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020719.1	+1	validated	p.S1901L	1.000	42	0%	57	36.8%	78	39.7%	probably_damaging(0.959)	tolerated(0.19)	neutral(0.452)	NULL
IRF3	3661	genome.wustl.edu	37	19	50165700	50165700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001571.4	-1	validated	p.L195M	0.000	80	0%	147	32.7%	40	35%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SMAD_FHA
CPT1C	126129	genome.wustl.edu	37	19	50209519	50209519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152359.1	+1	provisional	p.K398E	0.002	40	0%	56	30.4%	2	0%	possibly_damaging(0.637)	deleterious(0.05)	deleterious(0.569)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
TSKS	60385	genome.wustl.edu	37	19	50247577	50247577	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021733.1	-1	reviewed	p.F424	0.996	50	0%	92	22.8%	0	-	-	-	-	NULL
PNKP	11284	genome.wustl.edu	37	19	50368526	50368526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007254.2	-1	provisional	p.P119L	0.874	119	0%	238	27.7%	36	38.8%	benign(0.037)	tolerated(0.27)	neutral(0.036)	NULL
SIGLEC16	400709	genome.wustl.edu	37	19	50473288	50473288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000417280	+1	known	p.T99I	0.000	59	0%	106	20.8%	0	-	possibly_damaging(0.529)	deleterious(0)	deleterious(0.623)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF473	25888	genome.wustl.edu	37	19	50550117	50550117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006656.1	+1	validated	p.R806K	0.062	108	0%	72	31.9%	7	14.2%	benign(0.018)	tolerated(0.62)	neutral(0.005)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
JOSD2	126119	genome.wustl.edu	37	19	51009668	51009668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138334.2	-1	provisional	p.A145V	0.001	15	0%	16	31.2%	42	16.6%	possibly_damaging(0.647)	tolerated(0.25)	neutral(0.264)	HMMPfam_Josephin
JOSD2	126119	genome.wustl.edu	37	19	51013543	51013543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138334.2	-1	provisional	p.R49K	1.000	34	0%	72	37.5%	36	13.8%	possibly_damaging(0.88)	tolerated(0.4)	neutral(0.359)	HMMPfam_Josephin
LRRC4B	94030	genome.wustl.edu	37	19	51021653	51021653	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080457.1	-1	provisional	p.T439	0.999	15	0%	40	37.5%	2	50%	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
SHANK1	50944	genome.wustl.edu	37	19	51165336	51165336	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016148.2	-1	validated	p.I2124	0.833	26	0%	73	27.4%	29	48.2%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
KLK4	9622	genome.wustl.edu	37	19	51411894	51411894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004917.3	-1	reviewed	p.S139L	0.002	56	0%	62	37.1%	1	100%	possibly_damaging(0.736)	deleterious(0.04)	deleterious(0.618)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK5	25818	genome.wustl.edu	37	19	51452353	51452353	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077491.1	-1	reviewed	p.L118	0.111	44	0%	46	26.1%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK6	5653	genome.wustl.edu	37	19	51462489	51462489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000376853	-1	known	p.R94K	0.998	316	0%	378	32.3%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
KLK8	11202	genome.wustl.edu	37	19	51499464	51499464	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144505.1	-1	reviewed	p.S257A	1.000	77	0%	61	11.5%	0	-	possibly_damaging(0.909)	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER
KLK8	11202	genome.wustl.edu	37	19	51503456	51503456	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144505.1	-1	reviewed	p.E142*	0.098	201	0%	230	28.7%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
KLK13	26085	genome.wustl.edu	37	19	51561890	51561890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015596.1	-1	reviewed	p.R184C	0.950	155	0%	198	33.3%	1	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK13	26085	genome.wustl.edu	37	19	51563751	51563751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015596.1	-1	reviewed	p.L60F	0.994	65	0%	65	36.9%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
CD33	945	genome.wustl.edu	37	19	51728602	51728602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001772.3	+1	validated	p.V56F	0.001	63	0%	33	33.3%	1	0%	possibly_damaging(0.493)	deleterious(0.01)	deleterious(0.570)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC10	89790	genome.wustl.edu	37	19	51919600	51919600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033130.4	-1	validated	p.D240Y	0.004	128	0%	160	25.6%	7	0%	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	NULL
SIGLEC10	89790	genome.wustl.edu	37	19	51920436	51920436	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033130.4	-1	validated	p.D107	0.001	81	0%	88	23.9%	4	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC8	27181	genome.wustl.edu	37	19	51960725	51960725	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014442.2	-1	validated	p.L241	0.001	62	0%	41	24.4%	1	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SIGLEC8	27181	genome.wustl.edu	37	19	51961269	51961269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014442.2	-1	validated	p.R125W	0.000	201	0%	242	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CEACAM18	729767	genome.wustl.edu	37	19	51986481	51986481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080405.1	+1	provisional	p.R356Q	0.002	71	0%	72	36.1%	0	-	probably_damaging(0.983)	tolerated(0.67)	neutral(0.431)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52002805	52002805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053003.2	-1	reviewed	p.S325L	0.001	63	0%	56	32.1%	5	0%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
SIGLEC6	946	genome.wustl.edu	37	19	52023371	52023371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001245.5	-1	validated	p.D443N	0.000	133	0%	56	30.4%	2	0%	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
SIGLEC6	946	genome.wustl.edu	37	19	52031431	52031431	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001245.5	-1	validated	p.C363	0.054	116	0%	137	29.9%	0	-	-	-	-	NULL
ZNF175	7728	genome.wustl.edu	37	19	52090900	52090900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007147.2	+1	validated	p.R439I	1.000	80	0%	60	36.7%	5	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF175	7728	genome.wustl.edu	37	19	52091320	52091320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007147.2	+1	validated	p.R579Q	0.997	114	0%	101	38.6%	4	25%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF577	84765	genome.wustl.edu	37	19	52376542	52376542	+	Missense_Mutation	SNP	C	C	A	rs9807847	byCluster;byFrequency	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032679.2	-1	validated	p.R234I	0.821	161	0%	140	27.1%	8	37.5%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF350	59348	genome.wustl.edu	37	19	52468609	52468609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021632.3	-1	validated	p.R366I	0.870	130	0%	71	29.6%	11	27.2%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52496566	52496566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198480.2	-1	provisional	p.R588Q	0.930	151	0%	90	35.6%	20	20%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52496869	52496869	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198480.2	-1	provisional	p.N487T	0.000	234	0.4%	162	32.7%	13	46.1%	benign(0.022)	tolerated(0.37)	neutral(0.020)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52497425	52497425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198480.2	-1	provisional	p.R302W	0.000	146	0%	130	30%	6	33.3%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF614	80110	genome.wustl.edu	37	19	52520004	52520004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025040.3	-1	validated	p.E283K	0.032	131	0%	90	28.9%	3	33.3%	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52537148	52537148	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014650.2	-1	provisional	p.K595I	1.000	123	0%	88	36.4%	6	0%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	superfamily_SSF57667
ZNF432	9668	genome.wustl.edu	37	19	52537654	52537654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014650.2	-1	provisional	p.E426D	1.000	120	0%	115	30.4%	5	60%	benign(0.002)	deleterious(0.01)	neutral(0.406)	superfamily_SSF57667
ZNF841	284371	genome.wustl.edu	37	19	52568393	52568393	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136499.1	-1	validated	p.L914F	0.006	271	0%	248	26.2%	13	69.2%	probably_damaging(0.981)	tolerated(0.2)	deleterious(0.474)	NULL
ZNF841	284371	genome.wustl.edu	37	19	52568865	52568865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136499.1	-1	validated	p.R757I	0.403	142	0%	104	33.7%	16	50%	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52618543	52618543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178523.3	-1	validated	p.R625I	0.010	139	0%	68	36.8%	22	45.4%	benign(0.044)	tolerated(0.17)	neutral(0.061)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF616	90317	genome.wustl.edu	37	19	52618666	52618666	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178523.3	-1	validated	p.K584T	0.451	152	0%	92	28.3%	17	35.2%	possibly_damaging(0.725)	deleterious(0)	deleterious(0.708)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52659131	52659131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102657.1	-1	provisional	p.R602I	0.001	135	0%	68	48.5%	6	16.6%	probably_damaging(0.989)	tolerated(0.16)	deleterious(0.499)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52659467	52659467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001102657.1	-1	provisional	p.R490I	0.984	134	0%	80	31.2%	2	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF766	90321	genome.wustl.edu	37	19	52793573	52793573	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010851.2	+1	validated	p.E177*	0.002	74	1.4%	81	35.8%	13	61.5%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF766	90321	genome.wustl.edu	37	19	52793753	52793753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010851.2	+1	validated	p.R237C	0.974	79	0%	96	30.2%	15	33.3%	possibly_damaging(0.574)	deleterious(0.01)	deleterious(0.603)	superfamily_C2H2 and C2HC zinc fingers
ZNF480	147657	genome.wustl.edu	37	19	52825234	52825234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144684.2	+1	validated	p.S244L	0.000	64	0%	35	34.3%	6	16.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52909772	52909772	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032423.2	+1	validated	p.I49	0.000	195	0%	141	21.3%	11	27.2%	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF528	84436	genome.wustl.edu	37	19	52918725	52918725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032423.2	+1	validated	p.H207R	0.082	111	0%	76	22.4%	9	44.4%	possibly_damaging(0.89)	deleterious(0.01)	deleterious(0.756)	superfamily_C2H2 and C2HC zinc fingers
ZNF528	84436	genome.wustl.edu	37	19	52919555	52919555	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032423.2	+1	validated	p.H484N	0.003	76	0%	67	40.3%	9	44.4%	possibly_damaging(0.624)	deleterious(0.04)	deleterious(0.567)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF534	147658	genome.wustl.edu	37	19	52937238	52937238	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143939.1	+1	validated	p.E16*	0.997	213	0%	224	33%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF578	147660	genome.wustl.edu	37	19	53015310	53015310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099694.1	+1	validated	p.R559I	1.000	88	0%	54	24.1%	1	100%	probably_damaging(0.991)	tolerated(0.29)	deleterious(0.473)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF808	388558	genome.wustl.edu	37	19	53056829	53056829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039886.3	+1	validated	p.Q220H	0.001	297	0%	175	20.6%	1	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	superfamily_C2H2 and C2HC zinc fingers
ZNF83	55769	genome.wustl.edu	37	19	53117228	53117228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105549.1	-1	validated	p.R197I	0.000	112	0%	84	35.7%	31	51.6%	benign(0.302)	deleterious(0.05)	neutral(0.439)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF83	55769	genome.wustl.edu	37	19	53164097	53164097	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_003936.1	-1	validated	NULL	0.002	47	0%	20	45%	0	-	-	-	-	-
ZNF611	81856	genome.wustl.edu	37	19	53209139	53209139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030972.3	-1	validated	p.R390I	0.999	103	0%	79	35.4%	3	33.3%	possibly_damaging(0.701)	tolerated(0.12)	deleterious(0.512)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ENSG00000245932	0	genome.wustl.edu	37	19	53302662	53302662	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000500436	+1	known	NULL	0.003	80	0%	83	32.5%	9	55.5%	-	-	-	-
LOC388559	388559	genome.wustl.edu	37	19	53410219	53410219	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_496322.5	-1	model	p.N434	0.001	136	0%	116	11.2%	9	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF816	125893	genome.wustl.edu	37	19	53456095	53456095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031665.1	-1	validated	p.F33L	0.277	214	0%	262	27.1%	9	22.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF347	84671	genome.wustl.edu	37	19	53644760	53644760	+	Missense_Mutation	SNP	G	G	A	rs187812061	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032584.2	-1	validated	p.R441C	0.000	165	0%	112	39.3%	12	50%	benign(0.391)	deleterious(0.05)	deleterious(0.471)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF665	79788	genome.wustl.edu	37	19	53678789	53678789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024733.3	-1	provisional	p.F17L	0.998	252	0%	199	31.7%	1	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
VN1R4	317703	genome.wustl.edu	37	19	53770562	53770562	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173857.2	-1	validated	p.L119	0.156	151	0%	204	14.7%	0	-	-	-	-	HMMPfam_V1R,superfamily_Family A G protein-coupled receptor-like
BIRC8	112401	genome.wustl.edu	37	19	53793183	53793183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033341.3	-1	validated	p.L149I	0.614	173	0%	271	28.8%	0	-	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	superfamily_Inhibitor of apoptosis (IAP) repeat
ZNF845	91664	genome.wustl.edu	37	19	53855871	53855871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138374.1	+1	validated	p.S648*	0.004	102	0%	91	27.5%	6	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF845	91664	genome.wustl.edu	37	19	53855892	53855892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138374.1	+1	validated	p.R655I	0.006	104	0%	112	32.1%	3	66.6%	probably_damaging(0.984)	tolerated(0.42)	neutral(0.445)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF845	91664	genome.wustl.edu	37	19	53856033	53856033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138374.1	+1	validated	p.R702Q	0.000	130	0%	189	31.7%	6	50%	benign(0.363)	tolerated(0.35)	neutral(0.136)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF845	91664	genome.wustl.edu	37	19	53856816	53856816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138374.1	+1	validated	p.R963I	0.018	89	0%	102	25.5%	4	0%	possibly_damaging(0.944)	tolerated(0.22)	neutral(0.430)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF765	91661	genome.wustl.edu	37	19	53911125	53911125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040185.1	+1	provisional	p.R106I	0.015	173	0%	95	25.3%	2	0%	probably_damaging(0.961)	tolerated(0.22)	neutral(0.446)	NULL
ZNF765	91661	genome.wustl.edu	37	19	53911543	53911543	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040185.1	+1	provisional	p.C245	0.008	155	0%	132	26.5%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF761	388561	genome.wustl.edu	37	19	53959342	53959342	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008401.3	+1	validated	p.C527	0.908	108	0%	105	25.7%	15	40%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
MIR520E	574461	genome.wustl.edu	37	19	54178966	54178966	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384867	+1	known	NULL	0.006	80	0%	52	26.9%	0	-	-	-	-	-
MIR518F	574472	genome.wustl.edu	37	19	54203316	54203316	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384973	+1	known	NULL	0.005	120	0%	85	28.2%	0	-	-	-	-	-
MIR517A	574479	genome.wustl.edu	37	19	54215569	54215569	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000385001	+1	known	NULL	0.121	201	0%	180	23.9%	0	-	-	-	-	-
MIR521-2	574481	genome.wustl.edu	37	19	54219849	54219849	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384818	+1	known	NULL	0.005	150	0%	113	33.6%	0	-	-	-	-	-
MIR518A1	574488	genome.wustl.edu	37	19	54234315	54234315	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000385068	+1	known	NULL	0.008	98	0%	72	30.6%	0	-	-	-	-	-
PRKCG	5582	genome.wustl.edu	37	19	54387447	54387447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002739.3	+1	reviewed	p.E79K	1.000	77	0%	151	34.4%	0	-	benign(0.364)	tolerated(0.22)	neutral(0.158)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
PRKCG	5582	genome.wustl.edu	37	19	54395836	54395836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002739.3	+1	reviewed	p.D254N	1.000	32	0%	47	42.6%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CACNG7	59284	genome.wustl.edu	37	19	54445360	54445360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031896.3	+1	reviewed	p.P214L	1.000	38	0%	61	29.5%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
LILRB3	11025	genome.wustl.edu	37	19	54721279	54721279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001081450.1	-1	reviewed	p.R554I	0.000	188	0%	332	34.6%	26	3.8%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
LILRA3	11026	genome.wustl.edu	37	19	54804201	54804201	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000391745	-1	known	p.P8	0.000	211	0%	222	31.1%	1	0%	-	-	-	NULL
LILRA4	23547	genome.wustl.edu	37	19	54845205	54845205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012276.3	-1	reviewed	p.K429N	0.000	218	0%	305	34.8%	1	0%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
LENG8	114823	genome.wustl.edu	37	19	54967844	54967844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052925.2	+1	validated	p.R492Q	1.000	31	0%	19	42.1%	45	40%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	NULL
LAIR2	3904	genome.wustl.edu	37	19	55019341	55019341	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002288.3	+1	reviewed	p.L102	0.002	116	0%	127	22.8%	3	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
KIR2DL3	3804	genome.wustl.edu	37	19	55255406	55255406	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015868.2	+1	reviewed	p.N178	0.000	331	0%	210	26.2%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCAR	2204	genome.wustl.edu	37	19	55399594	55399594	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002000.2	+1	reviewed	p.Y194	0.002	74	0%	78	29.5%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NCR1	9437	genome.wustl.edu	37	19	55418039	55418039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004829.5	+1	validated	p.R77W	0.000	81	0%	138	33.3%	1	0%	probably_damaging(0.997)	tolerated(0.18)	deleterious(0.522)	HMMSmart_SM00409,superfamily_Immunoglobulin
NLRP7	199713	genome.wustl.edu	37	19	55450294	55450294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127255.1	-1	reviewed	p.E631D	0.674	39	0%	95	18.9%	0	-	benign(0.079)	tolerated(0.28)	neutral(0.037)	superfamily_RNI-like
NLRP7	199713	genome.wustl.edu	37	19	55450366	55450366	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127255.1	-1	reviewed	p.C607	0.000	56	0%	126	26.2%	1	0%	-	-	-	NULL
NLRP7	199713	genome.wustl.edu	37	19	55450758	55450758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127255.1	-1	reviewed	p.A477T	0.175	59	0%	98	26.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NLRP7	199713	genome.wustl.edu	37	19	55451447	55451447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127255.1	-1	reviewed	p.R247I	0.001	114	0%	164	11.6%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
GP6	51206	genome.wustl.edu	37	19	55543709	55543709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001083899.1	-1	validated	p.E41D	0.000	27	0%	53	28.3%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
PPP1R12C	54776	genome.wustl.edu	37	19	55604578	55604578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017607.2	-1	provisional	p.K569N	0.999	35	0%	80	30%	61	34.4%	unknown(0)	tolerated(0.08)	-	NULL
PPP1R12C	54776	genome.wustl.edu	37	19	55606088	55606088	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017607.2	-1	provisional	p.A511	0.064	79	0%	136	33.1%	58	50%	-	-	-	NULL
PPP1R12C	54776	genome.wustl.edu	37	19	55614843	55614843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017607.2	-1	provisional	p.R222Q	1.000	15	0%	65	30.8%	40	42.5%	benign(0.355)	deleterious(0.03)	deleterious(0.477)	superfamily_Ankyrin repeat
SUV420H2	84787	genome.wustl.edu	37	19	55853334	55853334	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032701.3	+1	validated	p.E10	0.998	31	0%	41	26.8%	17	41.1%	-	-	-	NULL
NLRP9	338321	genome.wustl.edu	37	19	56244346	56244346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176820.2	-1	reviewed	p.Y284S	0.000	73	0%	93	33.3%	0	-	benign(0.013)	tolerated(0.41)	neutral(0.015)	HMMPfam_NACHT
NLRP9	338321	genome.wustl.edu	37	19	56244789	56244789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176820.2	-1	reviewed	p.N136K	0.000	109	0%	101	29.7%	0	-	benign(0.031)	tolerated(0.86)	neutral(0.002)	NULL
RFPL4A	342931	genome.wustl.edu	37	19	56274480	56274480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145014.1	+1	validated	p.S268N	0.000	221	0%	147	21.1%	0	-	benign(0.024)	tolerated(0.19)	neutral(0.051)	HMMSmart_SPRY
ENSG00000229292	0	genome.wustl.edu	37	19	56283302	56283302	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000341750	+1	known	p.G44	0.005	139	0.7%	107	5.6%	0	-	-	-	-	superfamily_RING/U-box
NLRP11	204801	genome.wustl.edu	37	19	56303739	56303739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145007.3	-1	validated	p.R814H	0.000	164	0%	117	27.4%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	superfamily_RNI-like
NLRP4	147945	genome.wustl.edu	37	19	56369333	56369333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_134444.4	+1	validated	p.E192K	0.493	62	0%	33	18.2%	0	-	possibly_damaging(0.851)	deleterious(0.03)	deleterious(0.692)	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP4	147945	genome.wustl.edu	37	19	56369449	56369449	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_134444.4	+1	validated	p.I230	0.387	82	0%	44	27.3%	0	-	-	-	-	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP4	147945	genome.wustl.edu	37	19	56370237	56370237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_134444.4	+1	validated	p.R493K	0.000	261	0%	173	28.9%	0	-	benign(0)	tolerated(1)	-	NULL
NLRP13	126204	genome.wustl.edu	37	19	56423802	56423802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176810.2	-1	validated	p.S461P	0.907	54	0%	33	27.3%	0	-	probably_damaging(0.996)	tolerated(0.27)	deleterious(0.495)	NULL
NLRP8	126205	genome.wustl.edu	37	19	56467029	56467029	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176811.2	+1	provisional	p.H535	0.000	157	0%	98	32.7%	0	-	-	-	-	NULL
NLRP5	126206	genome.wustl.edu	37	19	56569737	56569737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153447.4	+1	reviewed	p.S1144L	0.001	127	0%	102	27.5%	0	-	possibly_damaging(0.602)	tolerated(0.11)	deleterious(0.480)	superfamily_SSF52047
ZSCAN5A	79149	genome.wustl.edu	37	19	56736076	56736076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024303.1	-1	provisional	p.D114Y	0.015	112	0%	115	20%	6	16.6%	possibly_damaging(0.901)	deleterious(0.03)	deleterious(0.722)	HMMPfam_SCAN,HMMSmart_SCAN
ZNF582	147948	genome.wustl.edu	37	19	56895626	56895626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144690.1	-1	provisional	p.R387I	0.997	141	0%	115	27%	2	50%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF583	147949	genome.wustl.edu	37	19	56935478	56935478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152478.2	+1	validated	p.R484I	0.973	130	0%	63	25.4%	1	100%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF583	147949	genome.wustl.edu	37	19	56935562	56935562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152478.2	+1	validated	p.R512I	0.615	128	0%	46	37%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF583	147949	genome.wustl.edu	37	19	56935646	56935646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152478.2	+1	validated	p.R540I	0.037	107	0%	65	43.1%	9	55.5%	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF667	63934	genome.wustl.edu	37	19	56953299	56953299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022103.3	-1	validated	p.E355D	0.897	208	0%	89	33.7%	4	0%	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_C2H2 and C2HC zinc fingers
ZNF471	57573	genome.wustl.edu	37	19	57035869	57035869	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020813.2	+1	validated	p.E145*	0.098	103	0%	81	59.3%	3	100%	-	-	-	NULL
ZNF470	388566	genome.wustl.edu	37	19	57089803	57089803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001668.3	+1	validated	p.R669I	0.655	165	0%	115	27.8%	4	0%	probably_damaging(0.98)	deleterious(0.04)	deleterious(0.773)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
USP29	57663	genome.wustl.edu	37	19	57640638	57640638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020903.2	+1	validated	p.S199P	0.000	64	0%	58	12.1%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
USP29	57663	genome.wustl.edu	37	19	57641296	57641296	+	Missense_Mutation	SNP	A	A	C	rs34233382	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020903.2	+1	validated	p.K418T	0.001	154	0%	122	35.2%	0	-	benign(0.245)	tolerated(0.06)	neutral(0.348)	HMMPfam_UCH,superfamily_SSF54001
USP29	57663	genome.wustl.edu	37	19	57641437	57641437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020903.2	+1	validated	p.L465P	0.000	162	0%	152	32.9%	0	-	benign(0.202)	deleterious(0.03)	neutral(0.384)	HMMPfam_UCH,superfamily_SSF54001
ZIM3	114026	genome.wustl.edu	37	19	57646558	57646558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052882.1	-1	provisional	p.K383Q	0.988	159	0%	129	14%	0	-	benign(0.238)	deleterious(0.01)	neutral(0.430)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DUXA	503835	genome.wustl.edu	37	19	57666668	57666668	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012729.1	-1	validated	p.E171*	0.024	102	0%	129	23.3%	0	-	-	-	-	NULL
ZNF264	9422	genome.wustl.edu	37	19	57724047	57724047	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003417.4	+1	reviewed	p.R528*	0.000	163	0%	72	20.8%	11	90.9%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100288211	100288211	genome.wustl.edu	37	19	57828651	57828651	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343660.1	-1	model	p.E94*	1.000	135	0%	241	29.9%	0	-	-	-	-	HMMPfam_DUF862
ZNF304	57343	genome.wustl.edu	37	19	57868023	57868023	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020657.2	+1	validated	p.E262	0.000	118	0%	128	30.5%	15	40%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF547	284306	genome.wustl.edu	37	19	57888527	57888527	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173631.2	+1	validated	p.A61	0.000	80	0%	56	23.2%	5	20%	-	-	-	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF547	284306	genome.wustl.edu	37	19	57888889	57888889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173631.2	+1	validated	p.R182I	0.015	122	0%	67	31.3%	2	50%	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	superfamily_C2H2 and C2HC zinc fingers
ZNF548	147694	genome.wustl.edu	37	19	57910857	57910857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152909.3	+1	validated	p.S401*	0.000	70	0%	56	35.7%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF749	388567	genome.wustl.edu	37	19	57956354	57956354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001023561.2	+1	provisional	p.K613T	0.000	103	0%	65	32.3%	1	100%	possibly_damaging(0.918)	tolerated(0.23)	neutral(0.410)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
VN1R1	57191	genome.wustl.edu	37	19	57967778	57967778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020633.2	-1	reviewed	p.S26Y	0.000	69	0%	77	27.3%	0	-	unknown(0)	deleterious(0)	-	superfamily_Family A G protein-coupled receptor-like
ZNF772	400720	genome.wustl.edu	37	19	57984791	57984791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001024596.2	-1	validated	p.K441E	1.000	175	0%	250	29.6%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF419	79744	genome.wustl.edu	37	19	58005262	58005262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098491.1	+1	validated	p.R447Q	0.000	189	0%	286	29%	13	30.7%	benign(0.117)	tolerated(1)	neutral(0.009)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF416	55659	genome.wustl.edu	37	19	58084067	58084067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017879.1	-1	provisional	p.R402I	0.006	121	0%	143	29.4%	4	75%	possibly_damaging(0.719)	deleterious(0)	deleterious(0.705)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF416	55659	genome.wustl.edu	37	19	58084981	58084981	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017879.1	-1	provisional	p.S97	0.000	125	0%	161	31.7%	6	16.6%	-	-	-	NULL
ZIK1	284307	genome.wustl.edu	37	19	58101511	58101511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010879.2	+1	provisional	p.D111G	0.418	81	0%	94	38.3%	3	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
ZIK1	284307	genome.wustl.edu	37	19	58101892	58101892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010879.2	+1	provisional	p.L238R	0.001	73	0%	87	29.9%	0	-	benign(0.057)	tolerated(0.14)	neutral(0.253)	superfamily_Multiheme cytochromes
ZIK1	284307	genome.wustl.edu	37	19	58102004	58102004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010879.2	+1	provisional	p.F275L	0.001	95	0%	149	31.5%	0	-	benign(0.311)	tolerated(0.19)	neutral(0.147)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF211	10520	genome.wustl.edu	37	19	58153237	58153237	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006385.3	+1	validated	p.S474	0.006	141	0%	102	22.5%	10	30%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZSCAN4	201516	genome.wustl.edu	37	19	58187871	58187871	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152677.2	+1	validated	p.E120*	0.502	88	0%	123	24.4%	0	-	-	-	-	HMMPfam_SCAN
ZNF551	90233	genome.wustl.edu	37	19	58198307	58198307	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138347.3	+1	validated	p.Y206D	0.000	69	0%	106	32.1%	5	60%	possibly_damaging(0.861)	tolerated(0.25)	neutral(0.370)	NULL
ZNF551	90233	genome.wustl.edu	37	19	58198959	58198959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138347.3	+1	validated	p.R423I	0.246	138	0%	109	32.1%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF671	79891	genome.wustl.edu	37	19	58234604	58234604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024833.2	-1	validated	p.N81K	0.608	122	0%	206	11.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF671	79891	genome.wustl.edu	37	19	58234669	58234669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024833.2	-1	validated	p.R60W	0.003	148	0%	215	30.2%	3	0%	benign(0.003)	tolerated(0.19)	neutral(0.050)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF776	284309	genome.wustl.edu	37	19	58265270	58265270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173632.3	+1	validated	p.R258C	0.998	105	0%	95	34.7%	6	16.6%	possibly_damaging(0.624)	deleterious(0.04)	deleterious(0.567)	superfamily_C2H2 and C2HC zinc fingers
ZNF776	284309	genome.wustl.edu	37	19	58265921	58265921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173632.3	+1	validated	p.L475I	0.002	161	0%	154	37%	9	55.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF586	54807	genome.wustl.edu	37	19	58290221	58290221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017652.2	+1	validated	p.E89A	0.000	67	0%	96	21.9%	25	72%	benign(0.003)	tolerated(0.45)	neutral(0.012)	superfamily_SSF57667
ZNF418	147686	genome.wustl.edu	37	19	58437519	58437519	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133460.1	-1	provisional	p.*677L	0.006	116	0%	72	22.2%	1	100%	-	-	-	NULL
C19orf18	147685	genome.wustl.edu	37	19	58485519	58485519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152474.4	-1	predicted	p.F58L	0.000	396	0%	173	26.6%	0	-	possibly_damaging(0.574)	tolerated(1)	neutral(0.197)	NULL
ZNF329	79673	genome.wustl.edu	37	19	58639906	58639906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024620.3	-1	validated	p.K322T	1.000	199	0%	215	34.9%	13	69.2%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF8	7554	genome.wustl.edu	37	19	58806563	58806563	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021089.2	+1	validated	p.S463	0.001	40	0%	38	23.7%	6	50%	-	-	-	superfamily_SSF57667
ZNF132	7691	genome.wustl.edu	37	19	58945384	58945384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003433.3	-1	validated	p.R476Q	0.000	170	0%	114	38.6%	0	-	probably_damaging(0.998)	tolerated(0.88)	deleterious(0.474)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF132	7691	genome.wustl.edu	37	19	58946445	58946445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003433.3	-1	validated	p.F122L	0.067	87	0%	88	28.4%	3	33.3%	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_C2H2 and C2HC zinc fingers
TRIM28	10155	genome.wustl.edu	37	19	59056833	59056833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005762.2	+1	reviewed	p.D128Y	1.000	56	0%	86	31.4%	181	41.9%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	superfamily_RING/U-box
DEFB125	245938	genome.wustl.edu	37	20	68379	68379	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153325.2	+1	reviewed	p.I10T	0.044	193	0%	59	11.9%	0	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
ZCCHC3	85364	genome.wustl.edu	37	20	278903	278903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000382352	+1	known	p.F226L	0.823	43	0%	50	40%	57	38.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
C20orf202	400831	genome.wustl.edu	37	20	1187730	1187730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009612.2	+1	predicted	p.R118Q	0.997	29	0%	29	24.1%	0	-	possibly_damaging(0.951)	-	-	NULL
RAD21L1	642636	genome.wustl.edu	37	20	1209230	1209230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136566.2	+1	validated	p.L45I	0.383	81	0%	185	31.9%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Rad21_Rec8_N
RAD21L1	642636	genome.wustl.edu	37	20	1210533	1210533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136566.2	+1	validated	p.A52T	1.000	134	0%	203	34.5%	0	-	possibly_damaging(0.849)	deleterious(0)	deleterious(0.770)	HMMPfam_Rad21_Rec8_N
RAD21L1	642636	genome.wustl.edu	37	20	1235028	1235028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136566.2	+1	validated	p.A533D	0.999	69	0%	55	43.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Rad21_Rec8
SNPH	9751	genome.wustl.edu	37	20	1276949	1276949	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000381867	+1	known	p.P22	1.000	34	0%	50	42%	0	-	-	-	-	NULL
SDCBP2	27111	genome.wustl.edu	37	20	1301046	1301046	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080489.3	-1	validated	p.Y5	1.000	74	0%	103	40.8%	6	50%	-	-	-	NULL
SIRPB2	284759	genome.wustl.edu	37	20	1456877	1456877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122962.1	-1	validated	p.D322Y	0.001	93	0%	98	22.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SIRPB2	284759	genome.wustl.edu	37	20	1458989	1458989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122962.1	-1	validated	p.T239A	1.000	88	0%	53	32.1%	1	0%	possibly_damaging(0.942)	deleterious(0.05)	deleterious(0.732)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIRPB2	284759	genome.wustl.edu	37	20	1459183	1459183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122962.1	-1	validated	p.D174G	0.511	57	0%	34	32.4%	3	0%	benign(0.017)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIRPG	55423	genome.wustl.edu	37	20	1629760	1629760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018556.3	-1	reviewed	p.R123Q	0.146	353	0%	140	27.9%	9	0%	benign(0.154)	tolerated(0.9)	neutral(0.013)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TGM3	7053	genome.wustl.edu	37	20	2290902	2290902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003245.3	+1	reviewed	p.V87A	0.000	42	0%	39	35.9%	0	-	benign(0.006)	tolerated(1)	-	HMMPfam_Transglut_N,superfamily_E set domains
TGM6	343641	genome.wustl.edu	37	20	2397950	2397950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198994.2	+1	validated	p.R470I	0.090	30	0%	30	23.3%	0	-	probably_damaging(0.969)	tolerated(0.42)	neutral(0.425)	NULL
TMC2	117532	genome.wustl.edu	37	20	2560664	2560664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080751.2	+1	validated	p.L266I	0.999	282	0%	205	32.2%	0	-	probably_damaging(0.999)	tolerated(0.57)	deleterious(0.496)	NULL
NOP56	10528	genome.wustl.edu	37	20	2638687	2638687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006392.2	+1	reviewed	p.S511Y	0.990	37	0%	45	22.2%	52	44.2%	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	NULL
CPXM1	56265	genome.wustl.edu	37	20	2779502	2779502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019609.4	-1	reviewed	p.K70N	1.000	148	0%	183	23%	12	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PTPRA	5786	genome.wustl.edu	37	20	2968579	2968579	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000358719	+1	known	p.R168*	0.021	79	0%	43	30.2%	0	-	-	-	-	NULL
FASTKD5	60493	genome.wustl.edu	37	20	3128875	3128875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021826.4	-1	validated	p.L281P	1.000	49	0%	42	45.2%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC4A11	83959	genome.wustl.edu	37	20	3211205	3211205	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032034.3	-1	reviewed	p.L473	0.588	79	0%	130	30%	5	60%	-	-	-	HMMPfam_HCO3_cotransp
C20orf194	25943	genome.wustl.edu	37	20	3259591	3259591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009984.1	-1	validated	p.L873I	1.000	40	0%	46	28.3%	7	57.1%	possibly_damaging(0.833)	tolerated(0.15)	deleterious(0.558)	NULL
C20orf194	25943	genome.wustl.edu	37	20	3270782	3270782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009984.1	-1	validated	p.C774R	1.000	111	0%	88	39.8%	5	20%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
C20orf194	25943	genome.wustl.edu	37	20	3354767	3354767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009984.1	-1	validated	p.E180D	1.000	166	0%	230	35.2%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATRN	8455	genome.wustl.edu	37	20	3515957	3515957	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_139321.2	+1	reviewed	p.T156	0.905	142	0%	113	27.4%	5	40%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SIGLEC1	6614	genome.wustl.edu	37	20	3678505	3678505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_023068.3	-1	reviewed	p.L688I	0.951	19	0%	23	43.5%	3	0%	probably_damaging(0.972)	tolerated(0.44)	neutral(0.426)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
HSPA12B	116835	genome.wustl.edu	37	20	3728940	3728940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052970.3	+1	reviewed	p.R251H	1.000	38	0%	62	32.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPEF1	25876	genome.wustl.edu	37	20	3759084	3759084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015417.4	-1	validated	p.S196Y	0.570	30	0%	56	41.1%	0	-	benign(0.011)	tolerated(0.89)	neutral(0.001)	NULL
SPEF1	25876	genome.wustl.edu	37	20	3759531	3759531	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000312411	-1	known	p.L162*	0.000	51	0%	85	27.1%	0	-	-	-	-	NULL
SMOX	54498	genome.wustl.edu	37	20	4164168	4164168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_175839.1	+1	reviewed	p.R466Q	1.000	81	0%	123	31.7%	35	28.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
RASSF2	9770	genome.wustl.edu	37	20	4766954	4766954	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014737.2	-1	reviewed	p.F278	0.503	152	0.7%	106	29.2%	4	0%	-	-	-	NULL
C20orf30	29058	genome.wustl.edu	37	20	5086926	5086926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009923.1	-1	validated	p.K107Q	1.000	81	0%	116	31.9%	174	44.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF872
GPCPD1	56261	genome.wustl.edu	37	20	5559154	5559154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019593.3	-1	validated	p.D193N	0.992	134	0%	120	31.7%	62	48.3%	benign(0.003)	tolerated(0.65)	neutral(0.003)	NULL
CHGB	1114	genome.wustl.edu	37	20	5903153	5903153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001819.2	+1	reviewed	p.E121D	0.001	61	0%	44	29.5%	3	100%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Granin
MCM8	84515	genome.wustl.edu	37	20	5963634	5963634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032485.4	+1	reviewed	p.E519A	1.000	187	0%	98	35.7%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCM,HMMSmart_SM00350,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRN4	164312	genome.wustl.edu	37	20	6021739	6021739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152611.3	-1	validated	p.D718N	0.000	9	0.000	16	0.312	3	0%	benign(0.065)	tolerated(0.44)	neutral(0.017)	NULL
BMP2	650	genome.wustl.edu	37	20	6759042	6759042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001200.2	+1	reviewed	p.S166N	1.000	89	0%	80	35%	6	83.3%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_TGFb_propeptide
PLCB1	23236	genome.wustl.edu	37	20	8769336	8769336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015192.2	+1	reviewed	p.E1082V	1.000	131	0%	72	27.8%	13	69.2%	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMPfam_PLC-beta_C
PLCB1	23236	genome.wustl.edu	37	20	8782723	8782723	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182734.1	+1	reviewed	p.F1148	1.000	161	0%	95	30.5%	11	45.4%	-	-	-	HMMPfam_PLC-beta_C
PLCB4	5332	genome.wustl.edu	37	20	9364898	9364898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000933.3	+1	reviewed	p.A302T	1.000	247	0%	384	32.6%	6	50%	possibly_damaging(0.951)	tolerated(0.07)	deleterious(0.713)	HMMPfam_efhand_like,superfamily_SSF47473
PLCB4	5332	genome.wustl.edu	37	20	9449230	9449230	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000933.3	+1	reviewed	p.E1075D	0.998	130	0%	63	12.7%	9	33.3%	possibly_damaging(0.643)	tolerated(0.74)	neutral(0.227)	NULL
PAK7	57144	genome.wustl.edu	37	20	9546725	9546725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020341.3	-1	reviewed	p.R433W	0.950	157	0%	96	25%	0	-	unknown(0)	deleterious(0)	-	superfamily_Kinase_like
PAK7	57144	genome.wustl.edu	37	20	9546931	9546931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020341.3	-1	reviewed	p.S364L	0.004	80	0%	80	30%	0	-	unknown(0)	tolerated(0.05)	-	NULL
ANKRD5	63926	genome.wustl.edu	37	20	10025099	10025099	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022096.4	+1	validated	p.R202*	0.999	196	0%	158	34.2%	5	60%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SNAP25	6616	genome.wustl.edu	37	20	10265376	10265376	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003081.2	+1	reviewed	p.K40T	1.000	358	0%	231	37.2%	0	-	possibly_damaging(0.899)	tolerated(0.17)	neutral(0.415)	HMMSmart_SM00397
JAG1	182	genome.wustl.edu	37	20	10625624	10625624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000214.2	-1	reviewed	p.R744Q	0.999	111	0%	60	41.7%	30	26.6%	possibly_damaging(0.895)	tolerated(0.19)	neutral(0.402)	superfamily_SSF57196
BTBD3	22903	genome.wustl.edu	37	20	11903664	11903664	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014962.2	+1	validated	p.E307*	1.000	119	0%	52	19.2%	21	33.3%	-	-	-	NULL
SPTLC3	55304	genome.wustl.edu	37	20	13053039	13053039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018327.2	+1	validated	p.D147N	1.000	126	0%	65	36.9%	1	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_PLP-dependent transferases
SEL1L2	80343	genome.wustl.edu	37	20	13847439	13847439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025229.1	-1	validated	p.S438Y	1.000	150	0%	88	28.4%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901
SEL1L2	80343	genome.wustl.edu	37	20	13869133	13869133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025229.1	-1	validated	p.G192E	1.000	123	0%	99	34.3%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901
FLRT3	23767	genome.wustl.edu	37	20	14308052	14308052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013281.2	-1	reviewed	p.V34A	1.000	84	0%	26	26.9%	14	71.4%	benign(0.017)	tolerated(0.71)	neutral(0.002)	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
PCSK2	5126	genome.wustl.edu	37	20	17410109	17410109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002594.2	+1	reviewed	p.S217Y	0.999	91	0%	70	27.1%	0	-	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,superfamily_Subtilisin-like
PCSK2	5126	genome.wustl.edu	37	20	17462297	17462297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002594.2	+1	reviewed	p.F500S	0.999	91	0%	77	33.8%	0	-	possibly_damaging(0.692)	tolerated(0.4)	neutral(0.264)	superfamily_Galactose-binding domain-like
BFSP1	631	genome.wustl.edu	37	20	17479648	17479648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001195.3	-1	reviewed	p.E258G	1.000	133	0%	166	28.3%	2	0%	possibly_damaging(0.69)	tolerated(0.17)	neutral(0.306)	superfamily_Prefoldin
RRBP1	6238	genome.wustl.edu	37	20	17640970	17640970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042576.1	-1	reviewed	p.K61N	1.000	158	0%	214	28%	118	36.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Rib_recp_KP_reg
CSRP2BP	57325	genome.wustl.edu	37	20	18123370	18123370	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020536.4	+1	reviewed	p.S22	0.098	83	0%	69	31.9%	92	44.5%	-	-	-	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18142589	18142589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020536.4	+1	reviewed	p.D270Y	1.000	86	0%	93	28%	4	25%	benign(0.213)	deleterious(0)	neutral(0.466)	NULL
POLR3F	10621	genome.wustl.edu	37	20	18455766	18455766	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006466.2	+1	reviewed	p.E122*	1.000	101	0%	82	29.3%	1	0%	-	-	-	HMMPfam_RNA_pol_Rpc34
SEC23B	10483	genome.wustl.edu	37	20	18508162	18508162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006363.4	+1	reviewed	p.R339Q	1.000	230	0%	158	29.7%	73	38.3%	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995
SLC24A3	57419	genome.wustl.edu	37	20	19496166	19496166	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020689.3	+1	validated	p.N102	0.245	261	0%	185	31.9%	1	0%	-	-	-	NULL
C20orf26	26074	genome.wustl.edu	37	20	20150030	20150030	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000431753	+1	known	p.S3L	0.908	202	0%	137	25.5%	1	0%	-	-	-	NULL
C20orf26	26074	genome.wustl.edu	37	20	20172058	20172058	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015585.3	+1	validated	p.E529*	1.000	171	0%	137	22.6%	0	-	-	-	-	superfamily_Acyl-CoA N-acyltransferases (Nat)
RALGAPA2	57186	genome.wustl.edu	37	20	20569982	20569982	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000430436	-1	known	p.R607*	0.969	294	0%	139	32.4%	5	60%	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
XRN2	22803	genome.wustl.edu	37	20	21312958	21312958	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012255.3	+1	reviewed	p.P246	0.977	166	0%	60	15%	36	11.1%	-	-	-	HMMPfam_XRN_N
XRN2	22803	genome.wustl.edu	37	20	21337273	21337273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012255.3	+1	reviewed	p.S723Y	0.997	119	0%	64	31.2%	58	41.3%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
NAPB	63908	genome.wustl.edu	37	20	23360521	23360521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022080.2	-1	validated	p.E240K	1.000	77	0%	86	32.6%	5	40%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_TPR-like
CST11	140880	genome.wustl.edu	37	20	23431173	23431173	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130794.1	-1	reviewed	p.K129N	0.831	185	0%	125	26.4%	0	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	HMMSmart_SM00043,superfamily_Cystatin/monellin
CST4	1472	genome.wustl.edu	37	20	23669457	23669457	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001899.2	-1	reviewed	p.F50	0.011	157	0%	162	34%	0	-	-	-	-	HMMPfam_Cystatin,HMMSmart_CY,superfamily_SSF54403
CST5	1473	genome.wustl.edu	37	20	23856851	23856851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001900.4	-1	reviewed	p.L135M	0.000	79	0%	65	35.4%	0	-	benign(0.245)	deleterious(0.05)	neutral(0.370)	HMMSmart_CY,superfamily_SSF54403
VSX1	30813	genome.wustl.edu	37	20	25059552	25059552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014588.4	-1	reviewed	p.E180D	0.998	120	0%	176	33.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ENTPD6	955	genome.wustl.edu	37	20	25205843	25205843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001247.2	+1	reviewed	p.C416R	0.998	74	0%	114	33.3%	157	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDA1_CD39
ZNF337	26152	genome.wustl.edu	37	20	25656669	25656669	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015655.2	-1	validated	p.L419I	0.082	228	0%	114	32.5%	22	54.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FRG1B	284802	genome.wustl.edu	37	20	29628320	29628320	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000278882	+1	known	p.E108*	1.000	224	0%	139	10.1%	19	36.8%	-	-	-	superfamily_Actin_crosslink,HMMPfam_FRG1
FRG1B	284802	genome.wustl.edu	37	20	29632657	29632657	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000278882	+1	known	p.E158*	1.000	98	0%	44	13.6%	8	62.5%	-	-	-	HMMPfam_FRG1
DEFB118	117285	genome.wustl.edu	37	20	29960710	29960710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_054112.1	+1	provisional	p.Q37K	0.000	117	0%	91	34.1%	0	-	benign(0.134)	tolerated(1)	neutral(0.011)	NULL
BCL2L1	598	genome.wustl.edu	37	20	30309498	30309498	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138578.1	-1	reviewed	p.N175T	1.000	72	0%	123	10.6%	138	7.9%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_Bcl-2,HMMSmart_SM00337,superfamily_Bcl-2 inhibitors of programmed cell death
TTLL9	164395	genome.wustl.edu	37	20	30527010	30527010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008409.2	+1	provisional	p.R395I	1.000	82	0%	94	31.9%	0	-	benign(0.326)	tolerated(0.17)	neutral(0.161)	NULL
HCK	3055	genome.wustl.edu	37	20	30672295	30672295	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002110.3	+1	reviewed	p.L262I	0.976	117	0%	91	36.3%	19	0%	benign(0.3)	tolerated(1)	neutral(0.093)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_SH2 domain
POFUT1	23509	genome.wustl.edu	37	20	30797902	30797902	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015352.1	+1	reviewed	p.F51	1.000	164	0%	313	29.7%	32	40.6%	-	-	-	HMMPfam_O-FucT
KIF3B	9371	genome.wustl.edu	37	20	30904598	30904598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004798.2	+1	reviewed	p.D557Y	1.000	88	0%	49	32.7%	21	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ASXL1	171023	genome.wustl.edu	37	20	31024333	31024333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015338.5	+1	reviewed	p.R1273H	0.001	78	0%	138	33.3%	40	22.5%	benign(0.002)	deleterious(0.05)	neutral(0.345)	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31386384	31386384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006892.3	+1	reviewed	p.R537W	1.000	25	0%	46	34.8%	13	53.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_FYVE/PHD zinc finger
EFCAB8	388795	genome.wustl.edu	37	20	31507985	31507985	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000439060	+1	known	p.E216*	0.002	201	0%	170	30.6%	0	-	possibly_damaging(0.722)	tolerated(0.46)	neutral(0.274)	superfamily_WD40 repeat-like
BPIFA1	51297	genome.wustl.edu	37	20	31825916	31825916	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016583.3	+1	reviewed	p.P72	0.001	52	0%	36	22.2%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP
EIF2S2	8894	genome.wustl.edu	37	20	32684602	32684602	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003908.3	-1	reviewed	p.R182*	1.000	158	0%	103	35.9%	66	0%	-	-	-	HMMPfam_eIF-5_eIF-2B,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain
ITCH	83737	genome.wustl.edu	37	20	33000442	33000442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031483.4	+1	reviewed	p.K112E	1.000	120	0%	73	24.7%	7	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PIGU	128869	genome.wustl.edu	37	20	33173303	33173303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080476.4	-1	reviewed	p.F288L	1.000	116	0%	80	21.2%	66	42.4%	probably_damaging(0.998)	tolerated(0.91)	deleterious(0.474)	HMMPfam_PIG-U
NCOA6	23054	genome.wustl.edu	37	20	33330707	33330707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014071.2	-1	reviewed	p.P1118L	0.998	91	0%	64	42.2%	15	66.6%	benign(0.231)	deleterious(0.04)	neutral(0.372)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33356353	33356353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014071.2	-1	reviewed	p.R143Q	1.000	181	0%	115	18.3%	8	62.5%	possibly_damaging(0.704)	deleterious(0.05)	deleterious(0.599)	NULL
ERGIC3	51614	genome.wustl.edu	37	20	34136358	34136358	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000416206	+1	known	p.A185D	1.000	104	0%	120	29.2%	521	38%	-	-	-	HMMPfam_DUF1692
RBM12	10137	genome.wustl.edu	37	20	34241865	34241865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006047.4	-1	reviewed	p.I460M	1.000	130	0%	173	34.1%	28	42.8%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PHF20	51230	genome.wustl.edu	37	20	34501190	34501190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016436.4	+1	validated	p.K527N	1.000	115	0%	80	18.8%	5	20%	unknown(0)	deleterious(0)	-	NULL
C20orf152	140894	genome.wustl.edu	37	20	34596237	34596237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080834.1	+1	predicted	p.R330I	0.998	111	0%	140	31.4%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_cNMP_binding
C20orf152	140894	genome.wustl.edu	37	20	34599173	34599173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080834.1	+1	predicted	p.E421D	0.008	48	0%	40	32.5%	0	-	benign(0.336)	tolerated(0.23)	neutral(0.147)	superfamily_cNMP_binding
DLGAP4	22839	genome.wustl.edu	37	20	35127701	35127701	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014902.4	+1	reviewed	p.I689	1.000	28	0%	56	32.1%	0	-	-	-	-	HMMPfam_GKAP
SAMHD1	25939	genome.wustl.edu	37	20	35539702	35539702	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015474.3	-1	reviewed	p.I397L	0.983	100	0%	86	33.7%	151	52.3%	benign(0.002)	tolerated(0.92)	-	NULL
RBL1	5933	genome.wustl.edu	37	20	35646692	35646692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002895.2	-1	reviewed	p.M904I	1.000	187	0%	255	32.9%	1	0%	benign(0.19)	tolerated(0.19)	neutral(0.068)	HMMPfam_RB_B,HMMSmart_SM00385,superfamily_Cyclin-like
RBL1	5933	genome.wustl.edu	37	20	35661099	35661099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002895.2	-1	reviewed	p.R784I	1.000	233	0%	139	30.9%	11	18.1%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
C20orf132	140699	genome.wustl.edu	37	20	35796563	35796563	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000343811	-1	known	p.S230*	0.997	232	0%	208	27.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
TTI1	9675	genome.wustl.edu	37	20	36634680	36634680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014657.1	-1	predicted	p.D808Y	1.000	264	0%	291	29.6%	29	44.8%	possibly_damaging(0.708)	deleterious(0.01)	deleterious(0.661)	superfamily_ARM-type_fold
TGM2	7052	genome.wustl.edu	37	20	36758681	36758681	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004613.2	-1	reviewed	p.F668	0.993	66	0%	70	38.6%	80	1.2%	-	-	-	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains
TGM2	7052	genome.wustl.edu	37	20	36766731	36766731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004613.2	-1	reviewed	p.E467K	0.000	88	0%	102	30.4%	97	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
TGM2	7052	genome.wustl.edu	37	20	36767875	36767875	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004613.2	-1	reviewed	p.S427	1.000	88	0%	135	30.4%	103	0.9%	-	-	-	superfamily_Cysteine proteinases
KIAA1755	85449	genome.wustl.edu	37	20	36841691	36841691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001029864.1	-1	predicted	p.R1119I	0.001	40	0%	39	48.7%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
BPI	671	genome.wustl.edu	37	20	36946834	36946834	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001725.2	+1	reviewed	p.N211T	0.000	109	0%	74	36.5%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
RALGAPB	57148	genome.wustl.edu	37	20	37177350	37177350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020336.2	+1	validated	p.V974A	1.000	255	0.4%	101	32.7%	11	45.4%	benign(0.057)	deleterious(0)	neutral(0.448)	NULL
RALGAPB	57148	genome.wustl.edu	37	20	37179799	37179799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020336.2	+1	validated	p.V1032A	1.000	176	0%	79	34.2%	16	50%	possibly_damaging(0.94)	tolerated(0.11)	deleterious(0.657)	NULL
ADIG	149685	genome.wustl.edu	37	20	37214769	37214769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001018082.1	+1	validated	p.E74D	0.006	44	0%	39	43.6%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
ARHGAP40	343578	genome.wustl.edu	37	20	37257569	37257569	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000373345	+1	known	e3-1	0.087	84	0%	76	14.5%	0	-	-	-	-	-
ARHGAP40	343578	genome.wustl.edu	37	20	37270438	37270438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000373345	+1	known	p.R397I	0.998	236	0%	347	14.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
LPIN3	64900	genome.wustl.edu	37	20	39984644	39984644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022896.1	+1	validated	p.K591N	1.000	379	0%	450	30.2%	14	64.2%	possibly_damaging(0.614)	deleterious(0.01)	deleterious(0.619)	NULL
EMILIN3	90187	genome.wustl.edu	37	20	39991683	39991683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052846.1	-1	validated	p.P176S	1.000	18	0%	28	39.3%	3	0%	possibly_damaging(0.767)	deleterious(0.03)	deleterious(0.649)	NULL
CHD6	84181	genome.wustl.edu	37	20	40041979	40041979	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032221.3	-1	reviewed	p.V2372	0.084	44	0%	55	25.5%	15	60%	-	-	-	NULL
CHD6	84181	genome.wustl.edu	37	20	40050163	40050163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032221.3	-1	reviewed	p.E1704D	0.973	98	0%	48	45.8%	13	30.7%	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
CHD6	84181	genome.wustl.edu	37	20	40050206	40050206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032221.3	-1	reviewed	p.I1690S	1.000	85	0%	46	30.4%	10	70%	benign(0.116)	deleterious(0)	neutral(0.454)	NULL
CHD6	84181	genome.wustl.edu	37	20	40102131	40102131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032221.3	-1	reviewed	p.R832Q	1.000	75	0%	37	29.7%	8	50%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPRT	11122	genome.wustl.edu	37	20	40714425	40714425	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000454126	-1	known	p.P943L	0.005	62	0%	40	37.5%	0	-	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRT	11122	genome.wustl.edu	37	20	40827911	40827911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133170.3	-1	reviewed	p.F839L	1.000	122	0%	103	34%	0	-	benign(0.002)	tolerated(1)	-	NULL
L3MBTL1	26013	genome.wustl.edu	37	20	42157386	42157386	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015478.5	+1	reviewed	e5+1	1.000	56	0%	49	28.6%	0	-	-	-	-	-
HNF4A	3172	genome.wustl.edu	37	20	43048506	43048506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000457.3	+1	reviewed	p.F294L	1.000	64	0%	69	36.2%	0	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ADA	100	genome.wustl.edu	37	20	43248478	43248478	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000022.2	-1	reviewed	p.L363	0.001	69	0%	80	33.8%	16	12.5%	-	-	-	NULL
KCNK15	60598	genome.wustl.edu	37	20	43379101	43379101	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022358.2	+1	reviewed	p.F205	0.998	32	0%	75	36%	2	50%	-	-	-	HMMPfam_Ion_trans_2,superfamily_SSF81324
TP53TG5	27296	genome.wustl.edu	37	20	44004081	44004081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014477.2	-1	validated	p.K122N	0.011	214	0%	278	23%	1	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
SPINT3	10816	genome.wustl.edu	37	20	44144190	44144190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006652.1	-1	validated	p.R20Q	0.000	106	0%	42	40.5%	0	-	probably_damaging(0.982)	tolerated(0.17)	deleterious(0.485)	NULL
CTSA	5476	genome.wustl.edu	37	20	44526445	44526445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000308.2	+1	reviewed	p.K436N	1.000	140	0%	249	22.5%	206	0.9%	possibly_damaging(0.591)	deleterious(0.05)	deleterious(0.549)	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
PLTP	5360	genome.wustl.edu	37	20	44527588	44527588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006227.2	-1	reviewed	p.A492T	0.145	108	0%	159	27%	222	7.2%	unknown(0)	tolerated(0.14)	-	NULL
MMP9	4318	genome.wustl.edu	37	20	44639620	44639620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004994.2	+1	reviewed	p.P194T	1.000	33	0%	56	32.1%	205	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
SLC12A5	57468	genome.wustl.edu	37	20	44665418	44665418	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001134771.1	+1	reviewed	p.T178	1.000	162	0%	206	35%	0	-	-	-	-	HMMPfam_AA_permease
NCOA5	57727	genome.wustl.edu	37	20	44708060	44708060	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020967.2	-1	reviewed	p.N2H	1.000	359	0%	268	29.5%	10	60%	unknown(0)	deleterious(0.01)	-	NULL
CDH22	64405	genome.wustl.edu	37	20	44806783	44806783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021248.1	-1	reviewed	p.D573N	1.000	43	0%	81	30.9%	0	-	benign(0.009)	tolerated(0.3)	neutral(0.029)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH22	64405	genome.wustl.edu	37	20	44841649	44841649	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021248.1	-1	reviewed	p.I339	1.000	86	0%	140	41.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH22	64405	genome.wustl.edu	37	20	44841828	44841828	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021248.1	-1	reviewed	e5-1	1.000	42	0%	65	29.2%	0	-	-	-	-	-
ELMO2	63916	genome.wustl.edu	37	20	45003265	45003265	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133171.3	-1	reviewed	p.P360	0.861	86	0%	69	23.2%	43	39.5%	-	-	-	HMMPfam_ELMO_CED12
NCOA3	8202	genome.wustl.edu	37	20	46264238	46264238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181659.2	+1	reviewed	p.S429R	0.988	38	0%	31	25.8%	15	46.6%	benign(0.149)	tolerated(0.5)	neutral(0.023)	NULL
PREX1	57580	genome.wustl.edu	37	20	47248859	47248859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000396220	-1	known	p.T1529M	0.059	54	0%	144	32.6%	25	8%	unknown(0)	-	-	NULL
PREX1	57580	genome.wustl.edu	37	20	47258745	47258745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020820.3	-1	reviewed	p.E1246K	1.000	97	0%	138	34.8%	13	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENSG00000245952	0	genome.wustl.edu	37	20	47274774	47274774	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000456747	+1	known	NULL	0.003	95	0%	85	27.1%	0	-	-	-	-	-
ARFGEF2	10564	genome.wustl.edu	37	20	47570183	47570183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006420.2	+1	reviewed	p.R232C	0.040	148	0%	94	23.4%	5	40%	benign(0.001)	tolerated(0.1)	neutral(0.286)	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47582450	47582450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006420.2	+1	reviewed	p.L317I	0.005	65	0%	53	32.1%	11	54.5%	benign(0.001)	tolerated(0.42)	neutral(0.014)	superfamily_ARM-type_fold
CSE1L	1434	genome.wustl.edu	37	20	47679858	47679858	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001316.2	+1	reviewed	p.Y69D	1.000	65	0%	37	13.5%	36	30.5%	probably_damaging(0.954)	deleterious(0.01)	deleterious(0.803)	HMMPfam_IBN_N,superfamily_ARM repeat
STAU1	6780	genome.wustl.edu	37	20	47734934	47734934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017453.2	-1	reviewed	p.K375N	1.000	297	0.3%	250	33.6%	63	61.9%	probably_damaging(0.999)	tolerated(0.63)	deleterious(0.494)	NULL
ZNFX1	57169	genome.wustl.edu	37	20	47881256	47881256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021035.2	-1	validated	p.M716I	1.000	113	0%	83	36.1%	14	57.1%	benign(0.256)	tolerated(0.39)	neutral(0.042)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNB1	3745	genome.wustl.edu	37	20	47990422	47990422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004975.2	-1	reviewed	p.E559K	1.000	95	0%	62	29%	0	-	probably_damaging(0.991)	tolerated(0.09)	deleterious(0.740)	HMMPfam_Kv2channel
KCNB1	3745	genome.wustl.edu	37	20	47991189	47991189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004975.2	-1	reviewed	p.R303Q	1.000	66	0%	38	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
KCNB1	3745	genome.wustl.edu	37	20	47991269	47991269	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004975.2	-1	reviewed	p.T276	1.000	68	0%	47	25.5%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SLC9A8	23315	genome.wustl.edu	37	20	48494576	48494576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015266.1	+1	validated	p.E378D	1.000	566	0%	467	32.1%	4	75%	possibly_damaging(0.758)	tolerated(0.12)	deleterious(0.541)	HMMPfam_Na_H_Exchanger
SNAI1	6615	genome.wustl.edu	37	20	48600511	48600511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005985.2	+1	reviewed	p.R78Q	0.159	36	0%	53	34%	4	50%	benign(0.004)	tolerated(0.3)	neutral(0.029)	NULL
PTPN1	5770	genome.wustl.edu	37	20	49197851	49197851	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002827.2	+1	reviewed	p.R380*	0.000	49	0%	82	36.6%	41	21.9%	-	-	-	NULL
ATP9A	10079	genome.wustl.edu	37	20	50225107	50225107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006045.1	-1	validated	p.K899E	1.000	145	0%	170	31.2%	39	51.2%	benign(0.104)	tolerated(0.25)	neutral(0.045)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50292678	50292678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006045.1	-1	validated	p.R290Q	0.710	145	0%	109	27.5%	22	54.5%	benign(0.239)	tolerated(0.08)	neutral(0.324)	NULL
SALL4	57167	genome.wustl.edu	37	20	50408677	50408677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020436.3	-1	reviewed	p.F115L	0.165	74	0%	91	30.8%	0	-	benign(0.004)	tolerated(0.48)	neutral(0.011)	NULL
ZNF217	7764	genome.wustl.edu	37	20	52198672	52198672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006526.2	-1	validated	p.I232L	0.169	72	0%	66	31.8%	18	33.3%	benign(0.021)	tolerated(0.71)	neutral(0.003)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CYP24A1	1591	genome.wustl.edu	37	20	52774015	52774015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000782.4	-1	reviewed	p.P449H	0.997	97	0%	66	18.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_p450,superfamily_Cytochrome_P450
CBLN4	140689	genome.wustl.edu	37	20	54579040	54579040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080617.4	-1	reviewed	p.S63L	1.000	55	0%	133	27.8%	0	-	benign(0.334)	tolerated(0.13)	neutral(0.357)	NULL
AURKA	6790	genome.wustl.edu	37	20	54961474	54961474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003600.2	-1	reviewed	p.S53Y	0.964	139	0%	108	31.5%	17	47%	possibly_damaging(0.527)	tolerated(1)	neutral(0.178)	NULL
GCNT7	140687	genome.wustl.edu	37	20	55066639	55066639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000243913	-1	known	p.H301N	0.001	65	0%	54	18.5%	0	-	benign(0.004)	tolerated(0.37)	neutral(0.019)	NULL
GCNT7	140687	genome.wustl.edu	37	20	55071770	55071770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000243913	-1	known	p.K177Q	1.000	175	0%	120	32.5%	0	-	possibly_damaging(0.903)	tolerated(0.53)	neutral(0.365)	HMMPfam_Branch
BMP7	655	genome.wustl.edu	37	20	55746057	55746057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001719.2	-1	reviewed	p.K418N	1.000	68	0%	95	42.1%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
RAE1	8480	genome.wustl.edu	37	20	55949834	55949834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001015885.1	+1	reviewed	p.A333T	0.986	66	0%	108	16.7%	53	26.4%	benign(0.29)	deleterious(0.02)	deleterious(0.473)	superfamily_WD40 repeat-like
RAE1	8480	genome.wustl.edu	37	20	55953108	55953108	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001015885.1	+1	reviewed	p.F354V	1.000	105	0%	153	11.1%	38	23.6%	benign(0.04)	tolerated(0.27)	neutral(0.036)	superfamily_WD40 repeat-like
CTCFL	140690	genome.wustl.edu	37	20	56090881	56090881	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080618.2	-1	reviewed	p.L357	0.697	100	0%	77	24.7%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PCK1	5105	genome.wustl.edu	37	20	56140182	56140182	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002591.3	+1	reviewed	p.E469*	0.995	92	0%	90	31.1%	0	-	-	-	-	HMMPfam_PEPCK,superfamily_SSF53795
ZBP1	81030	genome.wustl.edu	37	20	56186794	56186794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030776.2	-1	validated	p.G288D	0.000	37	0%	46	10.9%	6	0%	probably_damaging(0.998)	tolerated(0.79)	deleterious(0.475)	NULL
C20orf85	128602	genome.wustl.edu	37	20	56728607	56728607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178456.2	+1	validated	p.R26C	0.968	132	0%	138	25.4%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ANKRD60	140731	genome.wustl.edu	37	20	56798146	56798146	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001134442.3	-1	model	p.E175*	0.496	108	0%	201	29.4%	0	-	-	-	-	HMMPfam_Ank,superfamily_ANK,superfamily_SSF54236
TH1L	51497	genome.wustl.edu	37	20	57561209	57561209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198976.1	+1	reviewed	p.K50T	0.997	138	0%	218	42.2%	51	47%	benign(0.075)	tolerated(0.16)	neutral(0.065)	HMMPfam_TH1
PHACTR3	116154	genome.wustl.edu	37	20	58318215	58318215	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080672.3	+1	reviewed	p.R58*	0.981	93	0%	119	30.3%	0	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58443596	58443596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014258.2	-1	reviewed	p.R1287I	0.732	301	0%	162	32.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58450338	58450338	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014258.2	-1	reviewed	p.E1113*	1.000	143	0%	36	25%	0	-	-	-	-	NULL
SYCP2	10388	genome.wustl.edu	37	20	58467450	58467450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014258.2	-1	reviewed	p.Q653H	0.003	206	0%	74	31.1%	0	-	benign(0.009)	tolerated(0.4)	neutral(0.017)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58476860	58476860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014258.2	-1	reviewed	p.E347K	1.000	130	0%	55	50.9%	0	-	benign(0.273)	deleterious(0.04)	neutral(0.378)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58490229	58490229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014258.2	-1	reviewed	p.D209Y	1.000	88	0%	31	25.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CDH4	1002	genome.wustl.edu	37	20	60504809	60504809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001794.2	+1	reviewed	p.N716K	0.995	88	0%	142	28.2%	6	83.3%	possibly_damaging(0.575)	tolerated(0.6)	neutral(0.202)	HMMSmart_CA,superfamily_Cadherin
TAF4	6874	genome.wustl.edu	37	20	60574072	60574072	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003185.3	-1	reviewed	p.E960	0.819	90	0%	107	44.9%	23	52.1%	-	-	-	HMMPfam_TAF4
TAF4	6874	genome.wustl.edu	37	20	60582647	60582647	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003185.3	-1	reviewed	p.E644*	1.000	222	0%	433	28.4%	17	17.6%	-	-	-	HMMPfam_TAFH,HMMSmart_TAFH
C20orf151	140893	genome.wustl.edu	37	20	60992303	60992303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080833.2	-1	validated	p.E59D	1.000	120	0%	227	35.2%	7	57.1%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_CtIP_N
GATA5	140628	genome.wustl.edu	37	20	61040454	61040454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080473.4	-1	reviewed	p.S327L	0.007	35	0%	75	29.3%	8	62.5%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
C20orf166	128826	genome.wustl.edu	37	20	61167681	61167681	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178463.3	+1	validated	p.E51*	0.007	52	0%	129	23.3%	0	-	-	-	-	NULL
COL9A3	1299	genome.wustl.edu	37	20	61468602	61468602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001853.3	+1	reviewed	p.D591N	1.000	17	0%	27	25.9%	6	33.3%	probably_damaging(0.996)	tolerated(0.62)	neutral(0.466)	HMMPfam_Collagen
DIDO1	11083	genome.wustl.edu	37	20	61511540	61511540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033081.1	-1	reviewed	p.F1923C	0.975	15	0%	32	37.5%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
YTHDF1	54915	genome.wustl.edu	37	20	61834980	61834980	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000342761	-1	known	p.F3C	0.812	85	0%	170	25.9%	46	45.6%	unknown(0)	-	-	NULL
KCNQ2	3785	genome.wustl.edu	37	20	62065098	62065098	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_172109.1	-1	reviewed	p.*394Y	0.000	55	0%	83	27.7%	0	-	-	-	-	NULL
STMN3	50861	genome.wustl.edu	37	20	62275610	62275610	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015894.2	-1	reviewed	p.C24	1.000	116	0%	197	32%	11	9%	-	-	-	NULL
RTEL1	51750	genome.wustl.edu	37	20	62324554	62324554	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032957.3	+1	reviewed	p.Q970	0.996	81	0%	143	13.3%	44	6.8%	-	-	-	NULL
RTEL1	51750	genome.wustl.edu	37	20	62326721	62326721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032957.3	+1	reviewed	p.K1180N	0.065	29	0%	52	25%	42	30.9%	benign(0.215)	deleterious(0)	neutral(0.466)	NULL
ZNF512B	57473	genome.wustl.edu	37	20	62595930	62595930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020713.1	-1	provisional	p.G392S	0.766	65	0%	96	35.4%	19	36.8%	benign(0.418)	tolerated(0.16)	neutral(0.195)	NULL
ZNF512B	57473	genome.wustl.edu	37	20	62596057	62596057	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020713.1	-1	provisional	p.S349	0.966	40	0%	74	28.4%	20	35%	-	-	-	NULL
MYT1	4661	genome.wustl.edu	37	20	62836912	62836912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004535.2	+1	reviewed	p.Q52H	1.000	67	0%	107	31.8%	0	-	probably_damaging(0.991)	tolerated(0.26)	deleterious(0.478)	HMMPfam_zf-C2HC,superfamily_SSF103637
MYT1	4661	genome.wustl.edu	37	20	62839225	62839225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004535.2	+1	reviewed	p.E226K	0.729	30	0%	73	35.6%	0	-	benign(0.244)	tolerated(0.13)	neutral(0.277)	NULL
MYT1	4661	genome.wustl.edu	37	20	62868659	62868659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004535.2	+1	reviewed	p.E1003D	0.978	26	0%	60	28.3%	0	-	benign(0.026)	tolerated(0.52)	neutral(0.010)	NULL
TPTE	7179	genome.wustl.edu	37	21	10933875	10933875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199261.2	-1	validated	p.A335V	0.982	688	0.1%	386	10.1%	0	-	benign(0.059)	tolerated(0.33)	neutral(0.028)	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE	7179	genome.wustl.edu	37	21	10934073	10934073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199261.2	-1	validated	p.I302L	0.918	624	0%	321	11.2%	0	-	benign(0.206)	tolerated(0.18)	neutral(0.076)	superfamily_(Phosphotyrosine protein) phosphatases II
TPTE	7179	genome.wustl.edu	37	21	10944729	10944729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199261.2	-1	validated	p.L169I	0.008	335	0%	291	11%	0	-	benign(0.004)	tolerated(0.07)	neutral(0.319)	superfamily_Voltage-gated potassium channels
LIPI	149998	genome.wustl.edu	37	21	15579230	15579230	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198996.2	-1	validated	p.C5	0.593	121	0%	83	32.5%	0	-	-	-	-	NULL
HSPA13	6782	genome.wustl.edu	37	21	15753727	15753727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006948.4	-1	reviewed	p.V55L	1.000	162	0%	197	32%	25	28%	possibly_damaging(0.766)	deleterious(0)	deleterious(0.728)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
NRIP1	8204	genome.wustl.edu	37	21	16338758	16338758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003489.3	-1	reviewed	p.T586A	0.006	236	0%	178	32%	12	33.3%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
USP25	29761	genome.wustl.edu	37	21	17135240	17135240	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013396.3	+1	validated	p.E26*	1.000	194	0%	128	32%	9	77.7%	-	-	-	superfamily_UBA-like
USP25	29761	genome.wustl.edu	37	21	17197307	17197307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013396.3	+1	validated	p.I411L	1.000	136	0%	59	30.5%	12	41.6%	benign(0)	tolerated(1)	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP25	29761	genome.wustl.edu	37	21	17199507	17199507	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013396.3	+1	validated	p.E560*	1.000	62	0%	26	38.5%	13	23%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
USP25	29761	genome.wustl.edu	37	21	17250145	17250145	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013396.3	+1	validated	p.E944*	1.000	159	0%	98	27.6%	20	30%	-	-	-	NULL
TMPRSS15	5651	genome.wustl.edu	37	21	19651313	19651313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002772.2	-1	reviewed	p.S911Y	0.989	117	0%	102	30.4%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
NCAM2	4685	genome.wustl.edu	37	21	22782731	22782731	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004540.2	+1	reviewed	p.N445H	1.000	88	1.1%	85	24.7%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22790868	22790868	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004540.2	+1	reviewed	p.E487*	1.000	128	0%	120	23.3%	1	0%	-	-	-	superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22910264	22910264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004540.2	+1	reviewed	p.D834N	1.000	37	0%	29	34.5%	1	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
ADAMTS1	9510	genome.wustl.edu	37	21	28210368	28210368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006988.3	-1	reviewed	p.R812C	0.999	124	0%	106	28.3%	87	42.5%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_ADAM_spacer1
N6AMT1	29104	genome.wustl.edu	37	21	30248811	30248811	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013240.3	-1	reviewed	p.E181*	1.000	190	0%	111	24.3%	5	0%	-	-	-	HMMPfam_MTS,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
BACH1	571	genome.wustl.edu	37	21	30699083	30699083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001186.2	+1	reviewed	p.S313Y	0.027	63	0%	54	31.5%	2	50%	benign(0.079)	tolerated(0.07)	neutral(0.325)	NULL
GRIK1	2897	genome.wustl.edu	37	21	30959768	30959768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000830.3	-1	reviewed	p.L571F	1.000	76	0%	28	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIK1-AS2	100379661	genome.wustl.edu	37	21	30968742	30968742	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000333765	+1	known	p.N24T	0.591	97	0%	46	30.4%	0	-	unknown(0)	-	-	NULL
CLDN8	9073	genome.wustl.edu	37	21	31588108	31588108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_199328.2	-1	reviewed	p.F46V	0.000	58	0%	58	31%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_PMP22_Claudin
KRTAP27-1	643812	genome.wustl.edu	37	21	31709801	31709801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077711.1	-1	provisional	p.M62I	0.001	248	0%	98	31.6%	0	-	benign(0.014)	tolerated(0.6)	neutral(0.005)	HMMPfam_PMG
KRTAP15-1	254950	genome.wustl.edu	37	21	31812750	31812750	+	Silent	SNP	C	C	A	rs150201622	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181623.1	+1	provisional	p.I35	0.001	130	0%	91	30.8%	0	-	-	-	-	HMMPfam_PMG
KRTAP6-2	337967	genome.wustl.edu	37	21	31971143	31971143	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181604.1	-1	validated	p.C17	0.981	163	0%	85	24.7%	0	-	-	-	-	NULL
TIAM1	7074	genome.wustl.edu	37	21	32585754	32585754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003253.2	-1	validated	p.S726Y	1.000	180	0%	131	29%	1	0%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	NULL
SCAF4	57466	genome.wustl.edu	37	21	33065741	33065741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020706.2	-1	reviewed	p.R460Q	1.000	107	0%	125	42.4%	34	44.1%	unknown(0)	deleterious(0.01)	-	NULL
URB1	9875	genome.wustl.edu	37	21	33717059	33717059	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014825.2	-1	validated	p.I1359	0.000	90	0%	98	41.8%	15	46.6%	-	-	-	superfamily_ARM repeat
URB1	9875	genome.wustl.edu	37	21	33726277	33726277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014825.2	-1	validated	p.R794M	1.000	75	0%	89	29.2%	11	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
URB1	9875	genome.wustl.edu	37	21	33739062	33739062	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014825.2	-1	validated	p.I400	1.000	82	0%	45	20%	1	100%	-	-	-	NULL
C21orf63	59271	genome.wustl.edu	37	21	33873812	33873812	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000457807	+1	known	p.F182C	0.998	104	0%	109	22%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
TCP10L	140290	genome.wustl.edu	37	21	33949130	33949130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144659.5	-1	validated	p.P201H	0.000	207	0%	260	28.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TCP10L	140290	genome.wustl.edu	37	21	33951118	33951118	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144659.5	-1	validated	p.K128N	0.002	213	0%	327	33%	1	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34022584	34022584	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003895.3	-1	validated	p.L983V	1.000	266	0%	339	33.3%	1	100%	benign(0.011)	tolerated(0.18)	neutral(0.057)	HMMPfam_DUF1866
SYNJ1	8867	genome.wustl.edu	37	21	34045731	34045731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003895.3	-1	validated	p.R549C	1.000	210	0%	91	38.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SYNJ1	8867	genome.wustl.edu	37	21	34045838	34045838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003895.3	-1	validated	p.S513Y	1.000	136	0%	52	42.3%	2	50%	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	superfamily_DNase I-like
SYNJ1	8867	genome.wustl.edu	37	21	34099124	34099124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003895.3	-1	validated	p.E28G	1.000	70	0%	147	34.7%	6	50%	possibly_damaging(0.56)	tolerated(0.18)	neutral(0.247)	NULL
IL10RB	3588	genome.wustl.edu	37	21	34668541	34668541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000628.3	+1	reviewed	p.S286L	0.001	152	0%	100	42%	35	17.1%	benign(0.005)	tolerated(0.2)	neutral(0.049)	NULL
TMEM50B	757	genome.wustl.edu	37	21	34828091	34828091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006134.5	-1	validated	p.N125S	0.999	128	0%	60	38.3%	25	28%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_UPF0220
DNAJC28	54943	genome.wustl.edu	37	21	34860556	34860556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040192.1	-1	validated	p.F382C	0.089	287	0%	486	31.7%	0	-	benign(0.424)	deleterious(0.03)	deleterious(0.502)	NULL
DNAJC28	54943	genome.wustl.edu	37	21	34861550	34861550	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001040192.1	-1	validated	p.E51*	0.998	195	0%	337	32.6%	4	25%	-	-	-	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N
SON	6651	genome.wustl.edu	37	21	34921781	34921781	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138927.1	+1	reviewed	e3-1	1.000	47	0%	102	22.5%	1	100%	-	-	-	-
SON	6651	genome.wustl.edu	37	21	34931535	34931535	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138927.1	+1	reviewed	e5-1	1.000	124	0%	181	30.4%	0	-	-	-	-	-
MRPS6	64968	genome.wustl.edu	37	21	35514714	35514714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032476.3	+1	reviewed	p.F64L	1.000	115	0%	94	29.8%	105	31.4%	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	superfamily_Ribosomal protein S6
FAM165B	54065	genome.wustl.edu	37	21	35757925	35757925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058182.4	+1	validated	p.E54D	1.000	112	0%	101	32.7%	20	45%	benign(0.388)	deleterious(0)	deleterious(0.569)	NULL
RUNX1	861	genome.wustl.edu	37	21	36259154	36259154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001754.4	-1	reviewed	p.P113S	1.000	37	0%	63	28.6%	36	47.2%	benign(0.153)	deleterious(0)	neutral(0.458)	superfamily_p53-like transcription factors,HMMPfam_Runt
SETD4	54093	genome.wustl.edu	37	21	37429428	37429428	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017438.3	-1	validated	p.L50	0.071	168	0%	257	30%	12	83.3%	-	-	-	HMMPfam_SET,superfamily_SET domain
DOPEY2	9980	genome.wustl.edu	37	21	37603119	37603119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005128.2	+1	validated	p.K679N	0.878	55	0%	59	35.6%	6	50%	possibly_damaging(0.679)	deleterious(0.02)	deleterious(0.625)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37660375	37660375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005128.2	+1	validated	p.F2075C	1.000	292	0%	331	28.1%	9	22.2%	probably_damaging(0.988)	tolerated(0.12)	deleterious(0.698)	NULL
MORC3	23515	genome.wustl.edu	37	21	37711150	37711150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015358.2	+1	reviewed	p.K180T	0.998	77	0%	81	33.3%	5	60%	benign(0.062)	deleterious(0.02)	neutral(0.387)	superfamily_ATP_bd_ATPase
MORC3	23515	genome.wustl.edu	37	21	37741410	37741410	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015358.2	+1	reviewed	p.E582*	1.000	153	0.7%	98	23.5%	15	40%	-	-	-	NULL
CHAF1B	8208	genome.wustl.edu	37	21	37781718	37781718	+	Missense_Mutation	SNP	C	C	T	rs140663225		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005441.2	+1	reviewed	p.R292C	1.000	129	0%	144	13.2%	25	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
SIM2	6493	genome.wustl.edu	37	21	38098446	38098446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005069.3	+1	reviewed	p.K190N	1.000	64	0%	76	23.7%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TTC3	7267	genome.wustl.edu	37	21	38536423	38536423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001894.1	+1	validated	p.E1081K	1.000	97	0%	56	37.5%	70	34.2%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	superfamily_Spectrin,superfamily_SSF48452
TTC3	7267	genome.wustl.edu	37	21	38538098	38538098	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001894.1	+1	validated	p.I1194M	0.059	123	0.8%	68	38.2%	49	48.9%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	superfamily_Spectrin,superfamily_SSF48452
BRWD1	54014	genome.wustl.edu	37	21	40578101	40578101	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018963.3	-1	reviewed	p.R1433*	0.928	136	0%	77	20.8%	10	30%	-	-	-	superfamily_WD40 repeat-like
WRB	7485	genome.wustl.edu	37	21	40762677	40762677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004627.4	+1	reviewed	p.E52D	1.000	92	0%	150	33.3%	103	48.5%	benign(0.061)	tolerated(0.14)	neutral(0.254)	HMMPfam_CHD5
LCA5L	150082	genome.wustl.edu	37	21	40783686	40783686	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152505.3	-1	validated	p.R340*	0.996	171	0%	105	29.5%	0	-	-	-	-	NULL
B3GALT5	10317	genome.wustl.edu	37	21	41032583	41032583	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006057.1	+1	reviewed	p.E33*	0.001	196	0%	137	27.7%	0	-	-	-	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41684046	41684046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001389.3	-1	validated	p.A675V	1.000	60	0%	40	37.5%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MX2	4600	genome.wustl.edu	37	21	42767576	42767576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002463.1	+1	reviewed	p.R312W	0.784	141	0.7%	119	31.1%	8	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Dynamin_M,HMMSmart_DYNc,superfamily_SSF52540
MX2	4600	genome.wustl.edu	37	21	42771137	42771137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002463.1	+1	reviewed	p.F429L	0.995	89	0%	61	31.1%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Dynamin_M
MX2	4600	genome.wustl.edu	37	21	42775241	42775241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002463.1	+1	reviewed	p.E541K	0.082	148	0%	117	30.8%	4	0%	possibly_damaging(0.754)	tolerated(0.53)	neutral(0.286)	HMMPfam_Dynamin_M
TMPRSS3	64699	genome.wustl.edu	37	21	43809147	43809147	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024022.2	-1	reviewed	p.F71	0.999	62	0%	39	23.1%	18	38.8%	-	-	-	superfamily_LDL receptor-like module
TMPRSS3	64699	genome.wustl.edu	37	21	43815480	43815480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024022.2	-1	reviewed	p.R16Q	0.958	110	0%	120	30%	11	36.3%	possibly_damaging(0.786)	deleterious(0)	deleterious(0.739)	NULL
UBASH3A	53347	genome.wustl.edu	37	21	43867197	43867197	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018961.2	+1	validated	p.E627*	0.992	86	0%	76	39.5%	6	0%	-	-	-	superfamily_Phosphoglycerate mutase-like
RSPH1	89765	genome.wustl.edu	37	21	43913099	43913099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080860.2	-1	validated	p.E49K	0.981	162	0%	307	10.4%	5	0%	benign(0.084)	tolerated(0.33)	neutral(0.030)	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
RRP1B	23076	genome.wustl.edu	37	21	45113122	45113122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015056.2	+1	validated	p.R712Q	0.999	69	0%	83	32.5%	32	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNMT3L	29947	genome.wustl.edu	37	21	45680687	45680687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013369.2	-1	reviewed	p.N48D	0.004	103	0%	241	32.4%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
PFKL	5211	genome.wustl.edu	37	21	45746649	45746649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002626.4	+1	reviewed	p.K749N	1.000	19	0%	33	42.4%	642	38%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Phosphofructokinase
TRPM2	7226	genome.wustl.edu	37	21	45811266	45811266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003307.3	+1	reviewed	p.T518A	0.670	26	0%	64	17.2%	2	0%	benign(0.008)	tolerated(0.48)	neutral(0.011)	NULL
KRTAP10-6	386674	genome.wustl.edu	37	21	46011900	46011900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198688.2	-1	validated	p.C156R	0.167	156	0%	257	24.9%	0	-	unknown(0)	deleterious(0.03)	-	NULL
KRTAP10-12	386685	genome.wustl.edu	37	21	46117218	46117218	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198699.1	+1	provisional	p.E34	1.000	121	0%	160	36.9%	0	-	-	-	-	NULL
LOC100130599	100130599	genome.wustl.edu	37	21	46122458	46122458	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343756.1	+1	model	p.S238	0.000	180	0%	293	33.1%	0	-	-	-	-	HMMPfam_Keratin_B2
POFUT2	23275	genome.wustl.edu	37	21	46685485	46685485	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_133635.4	-1	validated	p.G401A	1.000	116	0%	228	28.9%	23	52.1%	possibly_damaging(0.857)	deleterious(0.03)	deleterious(0.696)	HMMPfam_O-FucT
MCM3AP	8888	genome.wustl.edu	37	21	47663444	47663444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003906.3	-1	reviewed	p.L1744P	0.020	39	0%	33	39.4%	40	37.5%	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47695124	47695124	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003906.3	-1	reviewed	p.F658	0.995	79	0%	113	33.6%	39	10.2%	-	-	-	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47705051	47705051	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003906.3	-1	reviewed	p.S50	0.000	99	0%	188	35.6%	7	14.2%	-	-	-	NULL
DIP2A	23181	genome.wustl.edu	37	21	47916967	47916967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015151.3	+1	reviewed	p.S117L	0.999	150	0%	261	32.6%	19	47.3%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_DMAP_binding
DIP2A	23181	genome.wustl.edu	37	21	47966845	47966845	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015151.3	+1	reviewed	p.I804	0.997	79	0%	133	27.1%	38	50%	-	-	-	superfamily_Acetyl-CoA synthetase-like
S100B	6285	genome.wustl.edu	37	21	48022235	48022235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006272.2	-1	reviewed	p.E32K	0.998	174	0%	250	26%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_S_100,superfamily_EF-hand
LOC729057	729057	genome.wustl.edu	37	22	16123334	16123334	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_042044.2	+1	model	NULL	1.000	189	0.5%	360	18.6%	15	0%	-	-	-	-
POTEH	23784	genome.wustl.edu	37	22	16258285	16258285	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136213.1	-1	provisional	p.T513	0.202	552	0%	259	7.7%	2	0%	-	-	-	NULL
POTEH	23784	genome.wustl.edu	37	22	16275261	16275261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136213.1	-1	provisional	p.S395T	0.217	357	0%	114	16.7%	0	-	probably_damaging(0.973)	tolerated(0.35)	neutral(0.435)	HMMSmart_ANK,superfamily_ANK
OR11H1	81061	genome.wustl.edu	37	22	16449167	16449167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005239.1	-1	provisional	p.F213C	0.000	288	0%	137	18.2%	0	-	benign(0.149)	deleterious(0.01)	neutral(0.419)	HMMPfam_7tm_1,superfamily_SSF81321
GAB4	128954	genome.wustl.edu	37	22	17473003	17473003	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037814.1	-1	provisional	p.E80fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
CECR1	51816	genome.wustl.edu	37	22	17670915	17670915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017424.2	-1	reviewed	p.D297Y	0.000	83	0%	112	30.4%	20	5%	possibly_damaging(0.565)	deleterious(0.02)	deleterious(0.576)	HMMPfam_A_deaminase,superfamily_SSF51556
CECR2	27443	genome.wustl.edu	37	22	18029011	18029011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000400573	+1	known	p.T1323M	0.014	55	0%	48	33.3%	0	-	possibly_damaging(0.782)	deleterious(0)	deleterious(0.738)	NULL
LOC100288065	100288065	genome.wustl.edu	37	22	18070645	18070645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344192.1	-1	model	p.G47D	0.066	172	0%	161	26.7%	0	-	-	-	-	NULL
MICAL3	57553	genome.wustl.edu	37	22	18354648	18354648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015241.2	-1	provisional	p.A795T	1.000	91	0%	131	30.5%	8	75%	probably_damaging(0.992)	tolerated(0.17)	deleterious(0.506)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1
PEX26	55670	genome.wustl.edu	37	22	18570906	18570906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000399746	+1	known	p.A327T	0.000	31	0%	20	35%	40	65%	unknown(0)	-	-	NULL
SLC25A1	6576	genome.wustl.edu	37	22	19165368	19165368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005984.2	-1	validated	p.F105L	1.000	24	0%	35	25.7%	141	39.7%	possibly_damaging(0.892)	tolerated(0.08)	deleterious(0.651)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CLTCL1	8218	genome.wustl.edu	37	22	19175222	19175222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007098.3	-1	reviewed	p.D1485N	0.974	60	0%	96	37.5%	9	33.3%	probably_damaging(0.969)	deleterious(0.05)	deleterious(0.757)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
CLTCL1	8218	genome.wustl.edu	37	22	19221125	19221125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007098.3	-1	reviewed	p.E396D	1.000	60	0%	43	14%	4	0%	benign(0)	tolerated(0.71)	neutral(0.002)	superfamily_ARM repeat
GNB1L	54584	genome.wustl.edu	37	22	19776238	19776238	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053004.2	-1	validated	p.R326	0.000	12	0%	16	25%	19	47.3%	-	-	-	NULL
TXNRD2	10587	genome.wustl.edu	37	22	19898968	19898968	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000334363	-1	known	p.I198	0.950	124	0%	176	27.8%	59	49.1%	-	-	-	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
MIR185	406961	genome.wustl.edu	37	22	20020673	20020673	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000385288	+1	known	NULL	1.000	46	0%	55	34.5%	0	-	-	-	-	-
RANBP1	5902	genome.wustl.edu	37	22	20106568	20106568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002882.2	+1	reviewed	p.E16D	0.994	82	0%	179	31.8%	132	53%	benign(0.057)	tolerated(0.1)	neutral(0.290)	NULL
RIMBP3	85376	genome.wustl.edu	37	22	20458827	20458827	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015672.1	-1	validated	p.G825	0.003	133	0%	184	13.6%	0	-	-	-	-	superfamily_SH3-domain
RIMBP3	85376	genome.wustl.edu	37	22	20458932	20458932	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015672.1	-1	validated	p.S790	0.046	162	0%	301	13.6%	0	-	-	-	-	NULL
FAM108A5P	729495	genome.wustl.edu	37	22	21022265	21022265	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343784.1	-1	model	p.I351	1.000	25	0%	71	19.7%	4	0%	-	-	-	superfamily_alpha/beta-Hydrolases
TMEM191A	84222	genome.wustl.edu	37	22	21055638	21055638	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026815.1	+1	predicted	NULL	0.472	163	0%	273	30.4%	0	-	-	-	-	-
TMEM191A	84222	genome.wustl.edu	37	22	21055800	21055800	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_026815.1	+1	predicted	NULL	0.192	184	0%	389	30.8%	0	-	-	-	-	-
PI4KA	5297	genome.wustl.edu	37	22	21098925	21098925	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_058004.2	-1	reviewed	p.Y1091	0.936	95	0%	71	25.4%	43	48.8%	-	-	-	NULL
AIFM3	150209	genome.wustl.edu	37	22	21329994	21329994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144704.2	+1	validated	p.Q245L	1.000	19	0%	55	21.8%	1	0%	benign(0.007)	tolerated(0.17)	neutral(0.059)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
FLJ39582	353117	genome.wustl.edu	37	22	21363749	21363749	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_027051.1	+1	validated	NULL	0.054	42	0%	70	40%	0	-	-	-	-	-
P2RX6	9127	genome.wustl.edu	37	22	21377875	21377875	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005446.3	+1	reviewed	p.S286	1.000	86	0%	100	18%	0	-	-	-	-	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR
PPM1F	9647	genome.wustl.edu	37	22	22277744	22277744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014634.2	-1	reviewed	p.F362L	1.000	34	0%	50	18%	14	21.4%	benign(0.039)	tolerated(1)	neutral(0.002)	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
IGLV10-54	28772	genome.wustl.edu	37	22	22569446	22569446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390287	+1	known	p.N46K	0.000	53	0%	88	28.4%	26	0%	possibly_damaging(0.89)	deleterious(0.04)	deleterious(0.699)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV1-50	28821	genome.wustl.edu	37	22	22682067	22682067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390291	+1	known	p.F83L	1.000	167	0%	78	33.3%	0	-	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV1-44	28823	genome.wustl.edu	37	22	22735489	22735489	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390297	+1	known	p.S42	0.822	124	0%	81	25.9%	1671	1.7%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF280B	140883	genome.wustl.edu	37	22	22842316	22842316	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080764.2	-1	reviewed	p.L470V	1.000	145	0%	110	38.2%	1	100%	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF280B	140883	genome.wustl.edu	37	22	22842526	22842526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080764.2	-1	reviewed	p.E400K	0.998	143	0%	83	28.9%	5	0%	benign(0.119)	deleterious(0)	neutral(0.454)	NULL
ZNF280A	129025	genome.wustl.edu	37	22	22868407	22868407	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080740.3	-1	reviewed	p.Q516	0.000	147	0%	214	34.6%	0	-	-	-	-	NULL
IGLV2-14	28815	genome.wustl.edu	37	22	23101595	23101595	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390312	+1	known	p.F83	0.999	154	0%	129	31%	1597	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLC3	3539	genome.wustl.edu	37	22	23248820	23248820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000390325	+1	known	p.Q103H	0.000	137	0%	126	11.1%	92	0%	-	-	-	superfamily_Immunoglobulin
GNAZ	2781	genome.wustl.edu	37	22	23438189	23438189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002073.2	+1	reviewed	p.D103N	1.000	28	0%	62	30.6%	9	44.4%	possibly_damaging(0.435)	deleterious(0.02)	deleterious(0.525)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF70	7621	genome.wustl.edu	37	22	24086177	24086177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021916.2	-1	provisional	p.R384I	0.509	103	0%	136	36.8%	4	25%	possibly_damaging(0.446)	tolerated(0.07)	neutral(0.465)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SUSD2	56241	genome.wustl.edu	37	22	24583711	24583711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019601.3	+1	validated	p.F688L	1.000	65	0%	149	36.2%	3	0%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
UPB1	51733	genome.wustl.edu	37	22	24916374	24916374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016327.2	+1	reviewed	p.E271K	1.000	86	0%	73	39.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Carbon-nitrogen hydrolase
MYO18B	84700	genome.wustl.edu	37	22	26243605	26243605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032608.5	+1	reviewed	p.R1254H	0.995	35	0%	20	40%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO18B	84700	genome.wustl.edu	37	22	26298640	26298640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032608.5	+1	reviewed	p.E1628D	1.000	76	0%	49	38.8%	0	-	probably_damaging(0.973)	tolerated(0.1)	deleterious(0.702)	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26688897	26688897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021115.4	+1	validated	p.S207L	0.136	28	0%	17	47.1%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
MN1	4330	genome.wustl.edu	37	22	28194960	28194960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002430.2	-1	reviewed	p.Q524H	1.000	7	0.000	15	0.333	0	-	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
TTC28	23331	genome.wustl.edu	37	22	28503660	28503660	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145418.1	-1	validated	p.I725L	1.000	136	0%	60	31.7%	2	0%	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CHEK2	11200	genome.wustl.edu	37	22	29092931	29092931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005735.1	-1	reviewed	p.E394D	0.999	173	0%	114	33.3%	12	25%	probably_damaging(0.999)	tolerated(0.43)	deleterious(0.504)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CHEK2	11200	genome.wustl.edu	37	22	29095873	29095873	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001005735.1	-1	reviewed	p.E364*	1.000	219	0%	156	28.2%	14	35.7%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C22orf31	25770	genome.wustl.edu	37	22	29456529	29456529	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015370.1	-1	predicted	p.S102	0.000	173	0%	193	30.1%	0	-	-	-	-	NULL
KREMEN1	83999	genome.wustl.edu	37	22	29533603	29533603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032045.4	+1	reviewed	p.I302T	0.999	124	0%	92	39.1%	10	50%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
RFPL1	5988	genome.wustl.edu	37	22	29834829	29834829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021026.2	+1	validated	p.N17H	0.007	188	0%	103	28.2%	0	-	benign(0.331)	deleterious(0)	deleterious(0.548)	superfamily_SSF57850
THOC5	8563	genome.wustl.edu	37	22	29927941	29927941	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000443089	-1	known	p.G102S	0.003	91	0%	85	9.4%	51	7.8%	-	-	-	HMMPfam_FimP
NF2	4771	genome.wustl.edu	37	22	30069387	30069387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000268.3	+1	reviewed	p.R418C	0.986	63	0%	53	28.3%	26	42.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ERM
MTMR3	8897	genome.wustl.edu	37	22	30418645	30418645	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021090.3	+1	reviewed	p.C1128	0.941	73	0%	73	28.8%	25	44%	-	-	-	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
LIF	3976	genome.wustl.edu	37	22	30639731	30639731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002309.3	-1	reviewed	p.S173L	0.297	220	0.5%	284	36.3%	5	20%	benign(0.316)	deleterious(0)	deleterious(0.543)	HMMPfam_LIF_OSM,HMMSmart_SM00080,superfamily_4-helical cytokines,PatternScan_LIF_OSM
OSM	5008	genome.wustl.edu	37	22	30661073	30661073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020530.3	-1	reviewed	p.S32L	0.019	40	0%	75	45.3%	4	0%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_LIF_OSM,HMMSmart_LIF_OSM,superfamily_4_helix_cytokine
SEC14L4	284904	genome.wustl.edu	37	22	30885864	30885864	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000381982	-1	known	p.*361Y	0.262	143	0%	115	35.7%	0	-	-	-	-	NULL
SEC14L4	284904	genome.wustl.edu	37	22	30891278	30891278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174977.3	-1	reviewed	p.E129G	1.000	36	0%	62	21%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CRAL_TRIO,HMMSmart_SM00516,superfamily_CRAL/TRIO domain
OSBP2	23762	genome.wustl.edu	37	22	31289464	31289464	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030758.3	+1	reviewed	p.E669*	0.997	44	0%	57	29.8%	7	0%	-	-	-	HMMPfam_Oxysterol_BP
INPP5J	27124	genome.wustl.edu	37	22	31521846	31521846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000331075	+1	known	p.G374V	0.382	155	0%	161	29.2%	5	60%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
PLA2G3	50487	genome.wustl.edu	37	22	31534378	31534378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015715.3	-1	validated	p.Q222H	0.003	38	0%	48	29.2%	3	66.6%	possibly_damaging(0.931)	tolerated(0.18)	neutral(0.433)	HMMPfam_Phospholip_A2_2,superfamily_Phospholipase A2 PLA2
LIMK2	3985	genome.wustl.edu	37	22	31663018	31663018	+	Nonsense_Mutation	SNP	C	C	T	rs114127458	byCluster;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031801.1	+1	reviewed	p.R343*	1.000	127	0%	144	24.3%	15	6.6%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
PATZ1	23598	genome.wustl.edu	37	22	31724906	31724906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014323.2	-1	reviewed	p.F504L	1.000	64	0%	77	31.2%	6	16.6%	possibly_damaging(0.636)	deleterious(0.03)	deleterious(0.587)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DEPDC5	9681	genome.wustl.edu	37	22	32272217	32272217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014662.2	+1	validated	p.F1226L	1.000	48	0%	38	13.2%	9	44.4%	benign(0.001)	tolerated(0.86)	neutral(0.001)	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
SLC5A1	6523	genome.wustl.edu	37	22	32495249	32495249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000343.3	+1	reviewed	p.D454N	1.000	81	0%	45	31.1%	1	100%	probably_damaging(0.972)	tolerated(0.33)	neutral(0.438)	HMMPfam_SSF
RFPL2	10739	genome.wustl.edu	37	22	32589039	32589039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006605.3	-1	validated	p.D75N	0.003	235	0%	190	30%	0	-	benign(0.158)	deleterious(0.01)	neutral(0.420)	superfamily_RING/U-box
RFPL2	10739	genome.wustl.edu	37	22	32589245	32589245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006605.3	-1	validated	p.L6R	0.006	132	0%	143	28%	0	-	benign(0.325)	deleterious(0)	deleterious(0.546)	NULL
RFPL3	10738	genome.wustl.edu	37	22	32754222	32754222	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098535.1	+1	validated	p.C55S	0.050	183	0%	245	29.4%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
BPIFC	254240	genome.wustl.edu	37	22	32828360	32828360	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174932.2	-1	validated	p.F383	0.997	211	0%	116	28.4%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2,superfamily_Bactericidal_perm-incr_a/b_dom
BPIFC	254240	genome.wustl.edu	37	22	32838716	32838716	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174932.2	-1	validated	p.L199	1.000	127	0%	79	25.3%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,superfamily_Bactericidal_perm-incr_a/b_dom
LARGE	9215	genome.wustl.edu	37	22	33673202	33673202	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004737.4	-1	reviewed	p.F639	0.832	45	0%	46	26.1%	50	42%	-	-	-	NULL
HMOX1	3162	genome.wustl.edu	37	22	35782704	35782704	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002133.1	+1	reviewed	p.I57	1.000	50	0%	93	32.3%	128	5.4%	-	-	-	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like
RASD2	23551	genome.wustl.edu	37	22	35943100	35943100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014310.3	+1	reviewed	p.A82T	1.000	40	0%	81	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
MB	4151	genome.wustl.edu	37	22	36013223	36013223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005368.2	-1	reviewed	p.E28K	0.985	109	0%	96	30.2%	2	100%	benign(0.37)	tolerated(0.31)	neutral(0.144)	HMMPfam_Globin,superfamily_Globin_like
APOL5	80831	genome.wustl.edu	37	22	36122366	36122366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030642.1	+1	reviewed	p.R84Q	0.000	152	0%	121	38%	0	-	benign(0.013)	tolerated(0.13)	neutral(0.253)	HMMPfam_ApoL
APOL1	8542	genome.wustl.edu	37	22	36661638	36661638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145343.2	+1	reviewed	p.K268N	0.004	128	0%	107	29%	302	43.3%	benign(0.046)	tolerated(0.16)	neutral(0.062)	HMMPfam_ApoL
MYH9	4627	genome.wustl.edu	37	22	36685153	36685153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002473.4	-1	reviewed	p.S1512F	1.000	82	0%	101	11.9%	424	17.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
CSF2RB	1439	genome.wustl.edu	37	22	37333883	37333883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000395.2	+1	reviewed	p.A678V	0.000	36	0%	36	19.4%	4	0%	benign(0.01)	tolerated(0.24)	neutral(0.038)	NULL
TST	7263	genome.wustl.edu	37	22	37414453	37414453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003312.4	-1	reviewed	p.F107L	1.000	46	0%	64	32.8%	96	41.6%	benign(0.047)	tolerated(0.1)	neutral(0.289)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
TMPRSS6	164656	genome.wustl.edu	37	22	37470651	37470651	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153609.2	-1	reviewed	p.C489	0.835	77	0%	128	39.1%	0	-	-	-	-	HMMSmart_SM00192,superfamily_LDL receptor-like module
RAC2	5880	genome.wustl.edu	37	22	37628014	37628014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002872.3	-1	reviewed	p.F82L	1.000	81	0%	130	17.7%	103	0%	benign(0.273)	deleterious(0.02)	neutral(0.412)	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540
ELFN2	114794	genome.wustl.edu	37	22	37770419	37770419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052906.3	-1	validated	p.D386Y	0.416	108	0%	192	27.6%	1	0%	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	NULL
TRIOBP	11078	genome.wustl.edu	37	22	38131127	38131127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039141.2	+1	reviewed	p.R1595H	0.000	22	0%	25	40%	0	-	benign(0.015)	deleterious(0.01)	neutral(0.406)	NULL
C22orf23	84645	genome.wustl.edu	37	22	38341156	38341156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032561.2	-1	predicted	p.R125I	0.980	210	0%	242	28.1%	6	33.3%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_UPF0193
SUN2	25777	genome.wustl.edu	37	22	39137526	39137526	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015374.1	-1	validated	p.L373	0.993	121	0%	168	34.5%	88	37.5%	-	-	-	NULL
APOBEC3D	140564	genome.wustl.edu	37	22	39428206	39428206	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152426.3	+1	reviewed	p.F349C	0.033	135	0%	218	27.1%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APOBEC_C,superfamily_Cytidine deaminase-like
TNRC6B	23112	genome.wustl.edu	37	22	40642051	40642051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015088.2	+1	validated	p.M13T	1.000	120	0%	138	28.3%	4	25%	unknown(0)	tolerated(0.17)	-	NULL
ADSL	158	genome.wustl.edu	37	22	40762521	40762521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000026.2	+1	reviewed	p.L484M	0.181	189	0%	279	34.1%	47	27.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MCHR1	2847	genome.wustl.edu	37	22	41077596	41077596	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005297.3	+1	reviewed	p.A311	1.000	51	0%	80	11.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EP300	2033	genome.wustl.edu	37	22	41523520	41523520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001429.3	+1	reviewed	p.Q312H	0.998	36	0%	21	23.8%	10	0%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
EP300	2033	genome.wustl.edu	37	22	41564555	41564555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001429.3	+1	reviewed	p.V1326A	1.000	138	0%	82	30.5%	19	52.6%	unknown(0)	deleterious(0)	-	HMMPfam_DUF906
EP300	2033	genome.wustl.edu	37	22	41564750	41564750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001429.3	+1	reviewed	p.E1351*	1.000	224	0%	133	30.8%	21	19%	-	-	-	HMMPfam_DUF906
EP300	2033	genome.wustl.edu	37	22	41568562	41568562	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001429.3	+1	reviewed	p.F1504	1.000	211	0%	140	35.7%	12	8.3%	-	-	-	HMMPfam_DUF906
PHF5A	84844	genome.wustl.edu	37	22	41864135	41864135	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032758.3	-1	reviewed	p.C23	1.000	131	0%	186	33.9%	101	51.4%	-	-	-	HMMPfam_PHF5
SREBF2	6721	genome.wustl.edu	37	22	42269956	42269956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004599.2	+1	reviewed	p.R341Q	1.000	83	0%	65	40%	56	35.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
WBP2NL	164684	genome.wustl.edu	37	22	42415373	42415373	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152613.2	+1	validated	p.N41H	0.000	152	0%	113	31%	2	50%	possibly_damaging(0.917)	tolerated(0.07)	deleterious(0.687)	NULL
WBP2NL	164684	genome.wustl.edu	37	22	42418308	42418308	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152613.2	+1	validated	p.I154M	0.017	253	0%	207	35.3%	1	0%	probably_damaging(0.953)	tolerated(0.15)	deleterious(0.637)	HMMPfam_WWbp
NDUFA6	4700	genome.wustl.edu	37	22	42483072	42483072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002490.3	-1	validated	p.V109F	1.000	113	0%	184	25.5%	507	62.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Complex1_LYR
CYP2D6	1565	genome.wustl.edu	37	22	42524294	42524294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000106.4	-1	reviewed	p.R242H	0.000	100	0%	158	15.8%	17	41.1%	benign(0.05)	tolerated(0.07)	neutral(0.322)	HMMPfam_p450,superfamily_Cytochrome_P450
LOC100289204	100289204	genome.wustl.edu	37	22	42538794	42538794	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343781.1	+1	model	p.F284V	0.991	22	0%	52	21.2%	11	27.2%	unknown(0)	deleterious(0)	-	NULL
TCF20	6942	genome.wustl.edu	37	22	42606069	42606069	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005650.1	-1	reviewed	p.K1748T	1.000	79	0%	77	33.8%	41	43.9%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
TCF20	6942	genome.wustl.edu	37	22	42609916	42609916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005650.1	-1	reviewed	p.L466I	1.000	79	0%	67	20.9%	13	61.5%	probably_damaging(0.996)	tolerated(0.59)	neutral(0.466)	NULL
PACSIN2	11252	genome.wustl.edu	37	22	43272953	43272953	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007229.3	-1	reviewed	p.F364	1.000	239	0%	374	36.1%	57	33.3%	-	-	-	NULL
EFCAB6	64800	genome.wustl.edu	37	22	43986030	43986030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022785.2	-1	validated	p.I986V	0.000	333	0%	182	40.1%	1	0%	benign(0)	tolerated(1)	-	superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	44168937	44168937	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022785.2	-1	validated	p.R62	1.000	151	0%	155	29.7%	0	-	-	-	-	NULL
PNPLA3	80339	genome.wustl.edu	37	22	44323041	44323041	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_025225.2	+1	reviewed	p.V138	0.009	54	0%	92	25%	6	0%	-	-	-	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
PARVG	64098	genome.wustl.edu	37	22	44602300	44602300	+	Silent	SNP	G	G	A	rs191035480	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001137605.1	+1	validated	p.P330	0.002	45	0%	92	22.8%	35	14.2%	-	-	-	NULL
PHF21B	112885	genome.wustl.edu	37	22	45281810	45281810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138415.3	-1	validated	p.K402N	1.000	42	0%	81	22.2%	6	0%	benign(0.021)	tolerated(0.11)	neutral(0.273)	superfamily_FYVE/PHD zinc finger
KIAA0930	23313	genome.wustl.edu	37	22	45599857	45599857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015264.1	-1	validated	p.D181N	1.000	93	0%	156	37.2%	73	23.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2045
SMC1B	27127	genome.wustl.edu	37	22	45749941	45749941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_148674.3	-1	validated	p.D1064N	1.000	188	0%	123	35.8%	1	100%	benign(0.218)	tolerated(0.24)	neutral(0.059)	HMMPfam_SMC_N,superfamily_SSF52540
PKDREJ	10343	genome.wustl.edu	37	22	46656711	46656711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006071.1	-1	reviewed	p.L837I	0.003	157	0%	281	32.7%	0	-	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	NULL
CELSR1	9620	genome.wustl.edu	37	22	46760421	46760421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014246.1	-1	reviewed	p.E2923K	0.999	8	0.000	27	0.370	27	48.1%	probably_damaging(0.981)	tolerated(0.61)	neutral(0.429)	NULL
CELSR1	9620	genome.wustl.edu	37	22	46780525	46780525	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014246.1	-1	reviewed	p.F2266	0.000	98	0%	144	21.5%	14	28.5%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
CELSR1	9620	genome.wustl.edu	37	22	46793691	46793691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014246.1	-1	reviewed	p.A1861T	0.999	108	0%	206	26.7%	21	61.9%	benign(0.047)	tolerated(1)	neutral(0.003)	superfamily_Concanavalin A-like lectins/glucanases
GRAMD4	23151	genome.wustl.edu	37	22	47068864	47068864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015124.2	+1	validated	p.K403N	1.000	20	0%	51	21.6%	14	35.7%	probably_damaging(0.993)	tolerated(0.14)	deleterious(0.700)	NULL
BRD1	23774	genome.wustl.edu	37	22	50171386	50171386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014577.1	-1	reviewed	p.R847Q	0.999	16	0%	20	25%	45	53.3%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	NULL
BRD1	23774	genome.wustl.edu	37	22	50216753	50216753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014577.1	-1	reviewed	p.E405K	0.811	135	0%	203	32%	26	50%	possibly_damaging(0.741)	tolerated(0.23)	neutral(0.313)	NULL
ENSG00000248043	0	genome.wustl.edu	37	22	50297911	50297911	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000499173	+1	known	NULL	0.000	27	0%	44	22.7%	3	0%	-	-	-	-
CRELD2	79174	genome.wustl.edu	37	22	50313828	50313828	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024324.3	+1	validated	p.F116	0.901	181	0%	335	31.3%	92	19.5%	-	-	-	superfamily_Growth factor receptor domain
TTLL8	164714	genome.wustl.edu	37	22	50454857	50454857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080447.1	-1	provisional	p.G780S	0.031	12	0%	23	26.1%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
TTLL8	164714	genome.wustl.edu	37	22	50487712	50487712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001080447.1	-1	provisional	p.A77V	0.001	264	0%	465	24.9%	0	-	benign(0.049)	tolerated(0.5)	neutral(0.013)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50564673	50564673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018995.2	+1	reviewed	p.A597V	0.900	101	0%	93	32.3%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50566933	50566933	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018995.2	+1	reviewed	p.N636T	0.095	125	0%	79	31.6%	0	-	possibly_damaging(0.572)	tolerated(0.37)	neutral(0.215)	NULL
MOV10L1	54456	genome.wustl.edu	37	22	50581594	50581594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018995.2	+1	reviewed	p.L768I	0.991	100	0%	103	31.1%	0	-	possibly_damaging(0.939)	tolerated(1)	neutral(0.385)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MOV10L1	54456	genome.wustl.edu	37	22	50584181	50584181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018995.2	+1	reviewed	p.F857I	0.512	68	0%	73	26%	0	-	possibly_damaging(0.836)	tolerated(0.18)	neutral(0.376)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TUBGCP6	85378	genome.wustl.edu	37	22	50664718	50664718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020461.3	-1	reviewed	p.R564Q	1.000	68	0%	117	25.6%	31	45.1%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Spc97_Spc98
FAM116B	414918	genome.wustl.edu	37	22	50754655	50754655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001794.3	-1	validated	p.A196V	0.066	28	0%	55	34.5%	14	21.4%	benign(0.011)	tolerated(0.21)	neutral(0.044)	HMMPfam_DUF1630
NCAPH2	29781	genome.wustl.edu	37	22	50954920	50954920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152299.3	+1	reviewed	p.M51I	1.000	164	0%	331	33.2%	73	43.8%	possibly_damaging(0.797)	tolerated(0.06)	deleterious(0.622)	HMMPfam_DUF1032
MAPK8IP2	23542	genome.wustl.edu	37	22	51048402	51048402	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000008876	+1	known	p.T528	0.000	9	0.000	9	0.444	3	33.3%	-	-	-	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	73897	73897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000400847	+1	known	p.R187C	NULL	403	0%	240	30.8%	0	-	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	88390	88390	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000400846	+1	known	p.R50	NULL	297	0%	226	27.4%	0	-	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
ENSG00000215608	0	genome.wustl.edu	37	GL000212.1	126724	126724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000400673	+1	known	p.R140I	NULL	85	0%	181	34.3%	18	0%	-	-	-	NULL
SHOX	6473	genome.wustl.edu	37	X	595372	595372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000451.3	+1	reviewed	p.E99D	0.997	91	0%	148	30.4%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
CSF2RA	1438	genome.wustl.edu	37	X	1401626	1401626	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006140.4	+1	reviewed	p.L10	0.001	331	0%	290	32.1%	7	0%	-	-	-	NULL
CSF2RA	1438	genome.wustl.edu	37	X	1407423	1407423	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006140.4	+1	reviewed	p.N77	0.000	299	0%	323	31%	9	0%	-	-	-	NULL
SLC25A6	293	genome.wustl.edu	37	X	1508569	1508569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001636.3	-1	reviewed	p.V55M	1.000	78	0%	122	31.1%	1637	39.9%	benign(0)	tolerated(0.2)	neutral(0.049)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
P2RY8	286530	genome.wustl.edu	37	X	1584506	1584506	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178129.4	-1	reviewed	p.D316Y	0.031	38	0%	72	29.2%	1	0%	possibly_damaging(0.46)	tolerated(0.06)	deleterious(0.474)	superfamily_SSF81321
P2RY8	286530	genome.wustl.edu	37	X	1584669	1584669	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178129.4	-1	reviewed	p.I261	0.714	36	0%	78	30.8%	8	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GYG2	8908	genome.wustl.edu	37	X	2772043	2772043	+	Missense_Mutation	SNP	G	G	A	rs192438244	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003918.2	+1	reviewed	p.D89N	1.000	121	0%	111	28.8%	7	28.5%	probably_damaging(0.974)	tolerated(0.1)	deleterious(0.702)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
MXRA5	25878	genome.wustl.edu	37	X	3239176	3239176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015419.3	-1	reviewed	p.R1517I	0.000	318	0%	373	37%	7	71.4%	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3239336	3239336	+	Missense_Mutation	SNP	G	G	T	rs41305155	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015419.3	-1	reviewed	p.H1464N	0.000	161	0%	182	28.6%	7	71.4%	benign(0.038)	tolerated(0.44)	neutral(0.015)	NULL
LOC100128355	100128355	genome.wustl.edu	37	X	3635394	3635394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343797.1	+1	model	p.L137I	1.000	11	0%	20	40%	0	-	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
NLGN4X	57502	genome.wustl.edu	37	X	5811117	5811117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020742.2	-1	reviewed	p.S731Y	0.998	269	0%	215	34.9%	31	38.7%	possibly_damaging(0.763)	deleterious(0)	deleterious(0.728)	NULL
NLGN4X	57502	genome.wustl.edu	37	X	5811289	5811289	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020742.2	-1	reviewed	p.E674*	0.998	308	0%	239	29.7%	13	46.1%	-	-	-	NULL
STS	412	genome.wustl.edu	37	X	7177469	7177469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000351.4	+1	reviewed	p.F159L	1.000	163	0%	107	34.6%	8	62.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
FAM9B	171483	genome.wustl.edu	37	X	8995915	8995915	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205849.2	-1	validated	p.F162	0.010	403	0%	462	31.6%	0	-	-	-	-	HMMPfam_Cor1
FAM9B	171483	genome.wustl.edu	37	X	8998326	8998326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_205849.2	-1	validated	p.A86D	0.029	514	0.2%	682	29.8%	0	-	benign(0.331)	deleterious(0.01)	deleterious(0.510)	HMMPfam_Cor1
GPR143	4935	genome.wustl.edu	37	X	9727443	9727443	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000447366	-1	known	p.C64R	0.936	87	0%	99	14.1%	14	0%	-	-	-	HMMPfam_Ocular_alb
SHROOM2	357	genome.wustl.edu	37	X	9912833	9912833	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001649.2	+1	reviewed	p.F1488	1.000	88	0%	100	31%	8	0%	-	-	-	HMMPfam_ASD2
WWC3	55841	genome.wustl.edu	37	X	10096130	10096130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015691.3	+1	validated	p.R737W	0.000	57	0%	104	24%	13	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
CLCN4	1183	genome.wustl.edu	37	X	10201541	10201541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001830.3	+1	reviewed	p.L734I	1.000	132	0%	63	31.7%	2	100%	possibly_damaging(0.589)	tolerated(0.06)	deleterious(0.526)	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain
ARHGAP6	395	genome.wustl.edu	37	X	11682706	11682706	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013427.2	-1	reviewed	p.S81	0.003	20	0%	51	27.5%	0	-	-	-	-	NULL
MSL3	10943	genome.wustl.edu	37	X	11781098	11781098	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_078629.2	+1	reviewed	p.Y244S	0.993	187	0%	244	34.4%	31	83.8%	probably_damaging(0.962)	tolerated(0.38)	neutral(0.423)	HMMPfam_MRG
MSL3	10943	genome.wustl.edu	37	X	11786782	11786782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_078629.2	+1	reviewed	p.R421I	1.000	218	0%	189	28.6%	28	0%	benign(0.132)	deleterious(0.01)	neutral(0.417)	HMMPfam_MRG
FRMPD4	9758	genome.wustl.edu	37	X	12692996	12692996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014728.3	+1	reviewed	p.S146L	1.000	330	0%	127	33.9%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
FRMPD4	9758	genome.wustl.edu	37	X	12734918	12734918	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014728.3	+1	reviewed	p.I780	1.000	69	0%	55	38.2%	0	-	-	-	-	NULL
TLR7	51284	genome.wustl.edu	37	X	12904831	12904831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016562.3	+1	reviewed	p.L402I	0.988	61	0%	19	42.1%	0	-	probably_damaging(0.998)	tolerated(0.58)	deleterious(0.479)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
TLR8	51311	genome.wustl.edu	37	X	12937648	12937648	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138636.4	+1	reviewed	p.K163	0.000	78	0%	44	29.5%	0	-	-	-	-	superfamily_SSF52047
EGFL6	25975	genome.wustl.edu	37	X	13635870	13635870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015507.3	+1	reviewed	p.K267R	1.000	111	0%	171	32.7%	8	0%	possibly_damaging(0.795)	tolerated(0.24)	neutral(0.336)	NULL
EGFL6	25975	genome.wustl.edu	37	X	13651188	13651188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015507.3	+1	reviewed	p.D546Y	0.032	221	0%	220	27.3%	13	84.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_MAM,HMMSmart_SM00137
TCEANC	170082	genome.wustl.edu	37	X	13680893	13680893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152634.2	+1	validated	p.S119N	0.007	83	0%	53	13.2%	0	-	benign(0.013)	tolerated(0.33)	neutral(0.025)	HMMPfam_TFIIS
TRAPPC2	6399	genome.wustl.edu	37	X	13734159	13734159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011658.3	-1	reviewed	p.K96N	1.000	79	0%	48	35.4%	8	25%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	HMMPfam_Sedlin_N,superfamily_SNARE-like
OFD1	8481	genome.wustl.edu	37	X	13762557	13762557	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003611.2	+1	reviewed	p.E146*	0.814	135	0%	152	35.5%	4	0%	-	-	-	NULL
OFD1	8481	genome.wustl.edu	37	X	13765058	13765058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003611.2	+1	reviewed	p.H272N	0.999	52	0%	45	22.2%	1	0%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
OFD1	8481	genome.wustl.edu	37	X	13780500	13780500	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003611.2	+1	reviewed	p.E809*	0.014	91	0%	53	35.8%	20	0%	-	-	-	NULL
OFD1	8481	genome.wustl.edu	37	X	13786292	13786292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003611.2	+1	reviewed	p.E959D	0.984	57	0%	38	28.9%	22	77.2%	unknown(0)	deleterious(0)	-	NULL
GLRA2	2742	genome.wustl.edu	37	X	14548223	14548223	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001118885.1	+1	reviewed	p.F15C	1.000	173	0%	77	27.3%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
MOSPD2	158747	genome.wustl.edu	37	X	14932667	14932667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152581.3	+1	validated	p.E345D	1.000	92	0%	27	29.6%	3	0%	possibly_damaging(0.891)	tolerated(0.25)	neutral(0.387)	HMMPfam_Motile_Sperm,superfamily_PapD-like
ASB11	140456	genome.wustl.edu	37	X	15306080	15306080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080873.1	-1	reviewed	p.R257I	0.155	99	0%	96	32.3%	0	-	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	HMMPfam_Ank,superfamily_ANK
ASB11	140456	genome.wustl.edu	37	X	15332526	15332526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012428.1	-1	reviewed	p.S28Y	0.752	200	0%	174	29.9%	0	-	benign(0.174)	deleterious(0)	neutral(0.461)	superfamily_Ankyrin repeat
PIGA	5277	genome.wustl.edu	37	X	15344081	15344081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002641.2	-1	reviewed	p.R268I	1.000	164	0%	157	33.8%	4	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
FIGF	2277	genome.wustl.edu	37	X	15376294	15376294	+	Missense_Mutation	SNP	C	C	A	rs78901600	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004469.2	-1	reviewed	p.R108I	0.939	152	0%	118	34.7%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Cystine-knot cytokines
PIR	8544	genome.wustl.edu	37	X	15408363	15408363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001018109.1	-1	reviewed	p.R235I	0.957	125	0%	85	21.2%	139	0%	benign(0.006)	tolerated(0.14)	neutral(0.249)	HMMPfam_Pirin_C,superfamily_RmlC_like_cupin
BMX	660	genome.wustl.edu	37	X	15527515	15527515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001721.6	+1	reviewed	p.L68I	0.800	190	0.5%	98	31.6%	2	50%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
BMX	660	genome.wustl.edu	37	X	15560135	15560135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001721.6	+1	reviewed	p.F475L	1.000	125	0%	50	30%	5	40%	benign(0)	tolerated(1)	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ACE2	59272	genome.wustl.edu	37	X	15596253	15596253	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021804.2	-1	reviewed	p.K419T	0.993	134	0%	39	33.3%	1	100%	possibly_damaging(0.783)	deleterious(0.01)	deleterious(0.699)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
S100G	795	genome.wustl.edu	37	X	16669190	16669190	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004057.2	+1	reviewed	p.E21*	1.000	123	0%	77	37.7%	0	-	-	-	-	HMMPfam_S_100,superfamily_SSF47473
REPS2	9185	genome.wustl.edu	37	X	17070539	17070539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004726.2	+1	reviewed	p.K314N	1.000	183	0%	96	30.2%	15	93.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00027,superfamily_EF-hand
REPS2	9185	genome.wustl.edu	37	X	17165584	17165584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004726.2	+1	reviewed	p.R655C	1.000	128	0%	98	36.7%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NHS	4810	genome.wustl.edu	37	X	17746422	17746422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198270.2	+1	reviewed	p.G1378V	0.714	63	0%	76	30.3%	14	78.5%	probably_damaging(0.953)	tolerated(0.06)	deleterious(0.719)	NULL
SCML1	6322	genome.wustl.edu	37	X	17768048	17768048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037540.1	+1	validated	p.L113P	0.000	54	0%	42	28.6%	13	0%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
BEND2	139105	genome.wustl.edu	37	X	18195788	18195788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153346.4	-1	validated	p.R511C	0.038	241	0%	101	31.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_BEN
BEND2	139105	genome.wustl.edu	37	X	18234646	18234646	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153346.4	-1	validated	p.S78*	0.002	297	0%	307	29%	0	-	-	-	-	NULL
SCML2	10389	genome.wustl.edu	37	X	18264743	18264743	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000420857	-1	known	p.R108K	0.000	183	0%	98	15.3%	0	-	-	-	-	NULL
CDKL5	6792	genome.wustl.edu	37	X	18622693	18622693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037343.1	+1	reviewed	p.R550Q	0.995	185	0%	125	27.2%	0	-	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	NULL
CDKL5	6792	genome.wustl.edu	37	X	18622812	18622812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037343.1	+1	reviewed	p.E590K	1.000	161	0%	98	26.5%	2	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
RS1	6247	genome.wustl.edu	37	X	18662663	18662663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000330.3	-1	reviewed	p.L137I	1.000	99	0%	131	32.1%	0	-	possibly_damaging(0.902)	tolerated(1)	neutral(0.357)	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,superfamily_Gal_bind_like
PPEF1	5475	genome.wustl.edu	37	X	18725934	18725934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006240.2	+1	reviewed	p.R12K	0.000	158	0%	103	35.9%	0	-	benign(0)	tolerated(1)	-	NULL
PPEF1	5475	genome.wustl.edu	37	X	18845433	18845433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006240.2	+1	reviewed	p.L597R	1.000	131	0%	127	23.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand,superfamily_Metallo-dependent phosphatases
ENSG00000250774	0	genome.wustl.edu	37	X	18917405	18917405	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000502927	+1	known	NULL	0.000	153	0%	214	33.2%	2	0%	-	-	-	-
PHKA2	5256	genome.wustl.edu	37	X	18958126	18958126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000292.2	-1	reviewed	p.K302T	1.000	126	0%	122	28.7%	4	0%	benign(0.26)	deleterious(0.01)	neutral(0.433)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
GPR64	10149	genome.wustl.edu	37	X	19014171	19014171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079858.2	-1	validated	p.S905Y	1.000	192	0%	133	29.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Family A G protein-coupled receptor-like
GPR64	10149	genome.wustl.edu	37	X	19025359	19025359	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079858.2	-1	validated	p.P561	0.000	214	0%	104	34.6%	0	-	-	-	-	NULL
GPR64	10149	genome.wustl.edu	37	X	19045393	19045393	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079858.2	-1	validated	e9-1	1.000	177	0%	94	9.6%	0	-	-	-	-	-
GPR64	10149	genome.wustl.edu	37	X	19055751	19055751	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001079858.2	-1	validated	p.K53T	0.908	86	0%	27	29.6%	0	-	benign(0.069)	deleterious(0.01)	neutral(0.410)	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19387212	19387212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001671.3	-1	validated	p.L651M	0.266	68	0%	81	22.2%	0	-	probably_damaging(0.982)	tolerated(0.21)	deleterious(0.470)	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19425370	19425370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001001671.3	-1	validated	p.L69I	1.000	187	0%	108	38%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CXorf23	256643	genome.wustl.edu	37	X	19984324	19984324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198279.3	-1	validated	p.S162Y	1.000	321	0%	259	32.8%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20074839	20074839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152780.3	-1	validated	p.S148L	0.993	75	0%	54	25.9%	1	100%	unknown(0)	deleterious(0.01)	-	NULL
RPS6KA3	6197	genome.wustl.edu	37	X	20194405	20194405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004586.2	-1	reviewed	p.F355L	1.000	225	0%	98	11.2%	5	20%	benign(0.004)	tolerated(0.6)	neutral(0.004)	HMMSmart_S_TK_X,HMMPfam_Pkinase_C
CNKSR2	22866	genome.wustl.edu	37	X	21444748	21444748	+	Silent	SNP	C	C	A	rs113885403	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014927.3	+1	reviewed	p.I66	0.991	183	0%	94	20.2%	1	0%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
CNKSR2	22866	genome.wustl.edu	37	X	21550056	21550056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014927.3	+1	reviewed	p.N392H	1.000	98	0%	35	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1170
CNKSR2	22866	genome.wustl.edu	37	X	21579612	21579612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014927.3	+1	reviewed	p.P443T	1.000	247	0%	127	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1170
CNKSR2	22866	genome.wustl.edu	37	X	21667093	21667093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014927.3	+1	reviewed	p.P946H	1.000	56	0%	73	27.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SMPX	23676	genome.wustl.edu	37	X	21755706	21755706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014332.1	-1	provisional	p.K81R	1.000	347	0%	115	26.1%	0	-	possibly_damaging(0.921)	tolerated(0.39)	neutral(0.387)	NULL
MBTPS2	51360	genome.wustl.edu	37	X	21871504	21871504	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015884.3	+1	reviewed	p.R185*	1.000	360	0%	437	32.5%	1	0%	-	-	-	HMMPfam_Peptidase_M50
MBTPS2	51360	genome.wustl.edu	37	X	21896624	21896624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015884.3	+1	reviewed	p.L359I	1.000	68	0%	40	25%	1	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Peptidase_M50
SMS	6611	genome.wustl.edu	37	X	21990679	21990679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004595.2	+1	reviewed	p.R107W	0.753	112	0%	89	28.1%	93	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHEX	5251	genome.wustl.edu	37	X	22065220	22065220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000444.4	+1	reviewed	p.F80L	1.000	255	0%	121	36.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
ZNF645	158506	genome.wustl.edu	37	X	22291136	22291136	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152577.2	+1	provisional	p.E10*	0.027	93	0%	81	25.9%	0	-	-	-	-	NULL
ZNF645	158506	genome.wustl.edu	37	X	22291302	22291302	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152577.2	+1	provisional	p.K65T	1.000	78	0%	74	23%	0	-	possibly_damaging(0.892)	tolerated(0.06)	deleterious(0.674)	HMMSmart_RING,superfamily_SSF57850
PTCHD1	139411	genome.wustl.edu	37	X	23410889	23410889	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173495.2	+1	validated	p.L418	1.000	114	0%	60	35%	0	-	-	-	-	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
SAT1	6303	genome.wustl.edu	37	X	23801480	23801480	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002970.2	+1	reviewed	p.F4	1.000	37	0%	103	35.9%	942	0%	-	-	-	superfamily_Acyl-CoA N-acyltransferases (Nat)
KLHL15	80311	genome.wustl.edu	37	X	24024329	24024329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030624.2	-1	reviewed	p.N161T	1.000	88	0%	88	36.4%	6	0%	possibly_damaging(0.766)	deleterious(0.01)	deleterious(0.690)	HMMPfam_BACK
FAM48B2	170067	genome.wustl.edu	37	X	24329515	24329515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136233.1	-1	provisional	p.L640I	0.000	56	0%	76	36.8%	0	-	-	-	-	NULL
FAM48B1	100130302	genome.wustl.edu	37	X	24382958	24382958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001136234.1	+1	inferred	p.A694V	0.000	76	0%	107	40.2%	0	-	-	-	-	NULL
PDK3	5165	genome.wustl.edu	37	X	24512886	24512886	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142386.2	+1	reviewed	p.S45*	1.000	158	0%	72	13.9%	8	0%	-	-	-	HMMPfam_BCDHK_Adom3,superfamily_SSF69012
PDK3	5165	genome.wustl.edu	37	X	24516957	24516957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142386.2	+1	reviewed	p.S87I	1.000	70	0%	53	34%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BCDHK_Adom3,superfamily_SSF69012
PDK3	5165	genome.wustl.edu	37	X	24521470	24521470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142386.2	+1	reviewed	p.R116I	1.000	151	0%	73	17.8%	6	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_BCDHK_Adom3,superfamily_SSF69012
POLA1	5422	genome.wustl.edu	37	X	24732774	24732774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016937.3	+1	reviewed	p.K144N	1.000	153	0%	220	35%	3	0%	benign(0.097)	deleterious(0.01)	neutral(0.413)	NULL
POLA1	5422	genome.wustl.edu	37	X	24746001	24746001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016937.3	+1	reviewed	p.V539A	1.000	169	0%	125	30.4%	7	0%	possibly_damaging(0.725)	deleterious(0.01)	deleterious(0.669)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
POLA1	5422	genome.wustl.edu	37	X	24761441	24761441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016937.3	+1	reviewed	p.K848R	1.000	118	0%	120	34.2%	5	100%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_SSF56672
LOC389842	389842	genome.wustl.edu	37	X	25663903	25663903	+	Missense_Mutation	SNP	G	G	A	rs189723016	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_372200.7	-1	model	p.A181V	1.000	69	0%	170	14.7%	0	-	-	-	-	NULL
MAGEB10	139422	genome.wustl.edu	37	X	27839534	27839534	+	Missense_Mutation	SNP	A	A	C	rs181085989	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182506.3	+1	reviewed	p.E37D	0.000	69	0%	45	28.9%	0	-	probably_damaging(0.991)	tolerated(0.37)	neutral(0.463)	NULL
MAGEB10	139422	genome.wustl.edu	37	X	27839798	27839798	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182506.3	+1	reviewed	p.K125N	0.001	74	0%	69	14.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
MAGEB3	4114	genome.wustl.edu	37	X	30254511	30254511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002365.4	+1	reviewed	p.S157Y	0.004	227	0%	157	22.9%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_MAGE
NR0B1	190	genome.wustl.edu	37	X	30322827	30322827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000475.4	-1	reviewed	p.E428K	0.982	231	0%	276	29.7%	0	-	probably_damaging(0.995)	tolerated(0.44)	deleterious(0.470)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
GK	2710	genome.wustl.edu	37	X	30714788	30714788	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128127.1	+1	reviewed	p.I239	1.000	132	0%	103	30.1%	4	0%	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
GK	2710	genome.wustl.edu	37	X	30719022	30719022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128127.1	+1	reviewed	p.T278M	1.000	144	0%	82	28%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FGGY_C,superfamily_SSF53067
TAB3	257397	genome.wustl.edu	37	X	30864692	30864692	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152787.3	-1	reviewed	p.E594*	1.000	283	0%	164	30.5%	3	0%	-	-	-	NULL
TAB3	257397	genome.wustl.edu	37	X	30877657	30877657	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152787.3	-1	reviewed	p.R17*	1.000	96	0%	65	12.3%	5	0%	-	-	-	HMMPfam_CUE,HMMSmart_SM00546
DMD	1756	genome.wustl.edu	37	X	31187717	31187717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004006.2	-1	reviewed	p.D3466Y	1.000	108	0%	28	21.4%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DMD	1756	genome.wustl.edu	37	X	31747823	31747823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004006.2	-1	reviewed	p.E2529*	1.000	315	0%	342	32.7%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31950304	31950304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004006.2	-1	reviewed	p.D2219Y	1.000	228	0%	93	26.9%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32305759	32305759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004006.2	-1	reviewed	p.K2059N	1.000	219	0%	92	32.6%	0	-	possibly_damaging(0.692)	tolerated(0.27)	neutral(0.281)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32456459	32456459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004006.2	-1	reviewed	p.R1324C	1.000	234	0%	89	24.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34148342	34148342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203408.3	-1	validated	p.S685Y	0.004	175	0%	134	32.1%	0	-	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
CXorf22	170063	genome.wustl.edu	37	X	35993332	35993332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152632.3	+1	validated	p.N775D	1.000	156	0%	77	33.8%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CXorf59	286464	genome.wustl.edu	37	X	36156104	36156104	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173695.2	+1	validated	p.N359H	0.999	251	0%	44	22.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Calponin-homology
CXorf30	645090	genome.wustl.edu	37	X	36322043	36322043	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001098843.3	+1	validated	p.N130H	0.418	115	0%	54	29.6%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FAM47C	442444	genome.wustl.edu	37	X	37026901	37026901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013736.2	+1	validated	p.D140Y	0.034	129	0%	127	36.2%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
LANCL3	347404	genome.wustl.edu	37	X	37534988	37534988	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000378619	+1	known	p.F395	1.000	249	0%	178	30.3%	1	0%	-	-	-	HMMPfam_LANC_like
XK	7504	genome.wustl.edu	37	X	37587470	37587470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021083.2	+1	reviewed	p.L364I	1.000	140	0%	70	32.9%	0	-	possibly_damaging(0.837)	tolerated(0.46)	neutral(0.332)	HMMPfam_XK-related
RPGR	6103	genome.wustl.edu	37	X	38145082	38145082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001034853.1	-1	reviewed	p.R1057M	0.009	470	0%	485	29.9%	1	0%	unknown(0)	deleterious(0.03)	-	NULL
RPGR	6103	genome.wustl.edu	37	X	38147138	38147138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001034853.1	-1	reviewed	p.E577K	0.000	298	0%	232	33.6%	6	0%	possibly_damaging(0.895)	tolerated(0.07)	deleterious(0.672)	NULL
RPGR	6103	genome.wustl.edu	37	X	38158319	38158319	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001034853.1	-1	reviewed	p.E379*	0.021	104	0%	55	27.3%	3	0%	-	-	-	NULL
RPGR	6103	genome.wustl.edu	37	X	38163930	38163930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001034853.1	-1	reviewed	p.S298R	0.004	118	0%	65	26.2%	4	0%	benign(0.081)	tolerated(0.37)	neutral(0.025)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
OTC	5009	genome.wustl.edu	37	X	38271206	38271206	+	Missense_Mutation	SNP	G	G	A	rs72558474		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000531.5	+1	reviewed	p.R320Q	0.009	161	0%	77	28.6%	8	0%	possibly_damaging(0.496)	tolerated(0.1)	neutral(0.452)	superfamily_Aspartate/ornithine carbamoyltransferase,HMMPfam_OTCace
BCOR	54880	genome.wustl.edu	37	X	39922896	39922896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123385.1	-1	reviewed	p.S1271L	0.977	229	0%	323	29.1%	27	22.2%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
BCOR	54880	genome.wustl.edu	37	X	39930238	39930238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123385.1	-1	reviewed	p.E1076K	0.996	265	0%	312	35.3%	28	10.7%	benign(0.003)	tolerated(0.37)	neutral(0.019)	NULL
BCOR	54880	genome.wustl.edu	37	X	39933287	39933287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123385.1	-1	reviewed	p.D438Y	1.000	94	0%	106	28.3%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCOR	54880	genome.wustl.edu	37	X	39937177	39937177	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001123385.1	-1	reviewed	p.L2	1.000	82	0%	162	13%	5	40%	-	-	-	NULL
MED14	9282	genome.wustl.edu	37	X	40568698	40568698	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004229.3	-1	reviewed	p.S396*	1.000	94	0%	58	34.5%	11	9%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41000333	41000333	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039590.2	+1	reviewed	p.K295N	1.000	44	0%	15	40%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP9X	8239	genome.wustl.edu	37	X	41002634	41002634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039590.2	+1	reviewed	p.R418C	1.000	151	0%	47	34%	17	76.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP9X	8239	genome.wustl.edu	37	X	41075375	41075375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039590.2	+1	reviewed	p.Q1852P	1.000	132	0%	192	30.2%	97	53.6%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_UCH,superfamily_Cysteine proteinases
DDX3X	1654	genome.wustl.edu	37	X	41205843	41205843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001356.3	+1	reviewed	p.R528H	1.000	269	0%	274	33.9%	222	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR34	2857	genome.wustl.edu	37	X	41555198	41555198	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001097579.1	+1	validated	p.I104	0.994	122	0%	95	33.7%	3	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR34	2857	genome.wustl.edu	37	X	41555793	41555793	+	Nonsense_Mutation	SNP	G	G	T	rs5918228	byCluster	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001097579.1	+1	validated	p.E303*	0.741	279	0%	152	32.2%	3	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CASK	8573	genome.wustl.edu	37	X	41712457	41712457	+	Missense_Mutation	SNP	C	C	T	rs137852816		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003688.3	-1	reviewed	p.R28Q	1.000	129	0%	206	28.2%	16	93.7%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MAOA	4128	genome.wustl.edu	37	X	43603383	43603383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000240.2	+1	reviewed	p.E468K	0.000	163	0%	95	29.5%	11	100%	benign(0)	tolerated(0.63)	neutral(0.004)	superfamily_FAD/NAD(P)-binding domain
MAOB	4129	genome.wustl.edu	37	X	43698147	43698147	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000898.4	-1	reviewed	p.V82	1.000	95	0%	42	19%	0	-	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
NDP	4693	genome.wustl.edu	37	X	43817872	43817872	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000266.3	-1	reviewed	p.A7G	1.000	166	0%	78	30.8%	2	100%	benign(0.253)	tolerated(0.16)	neutral(0.085)	NULL
EFHC2	80258	genome.wustl.edu	37	X	44109508	44109508	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000333807	-1	known	p.E264*	0.995	120	0%	58	32.8%	0	-	-	-	-	HMMSmart_SM00676,HMMPfam_DUF1126
FUNDC1	139341	genome.wustl.edu	37	X	44386488	44386488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173794.3	-1	validated	p.E129K	1.000	332	0%	231	32.9%	35	0%	benign(0.004)	tolerated(0.09)	neutral(0.296)	HMMPfam_FUN14
DUSP21	63904	genome.wustl.edu	37	X	44703878	44703878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022076.3	+1	reviewed	p.R167H	0.010	49	0%	36	36.1%	0	-	benign(0.037)	tolerated(0.43)	neutral(0.015)	NULL
KDM6A	7403	genome.wustl.edu	37	X	44911010	44911010	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021140.2	+1	reviewed	p.L237	1.000	72	0%	73	16.4%	7	71.4%	-	-	-	HMMSmart_TPR,superfamily_SSF48452
CXorf36	79742	genome.wustl.edu	37	X	45016981	45016981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_176819.3	-1	validated	p.N217K	0.039	68	0%	126	34.1%	1	0%	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	NULL
MIR222	407007	genome.wustl.edu	37	X	45606454	45606454	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384992	-1	known	NULL	1.000	66	0%	37	45.9%	0	-	-	-	-	-
ZNF674	641339	genome.wustl.edu	37	X	46359642	46359642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039891.2	-1	validated	p.R461I	0.989	189	0%	105	36.2%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF674	641339	genome.wustl.edu	37	X	46359810	46359810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039891.2	-1	validated	p.R405I	1.000	210	0%	93	29%	2	100%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF674	641339	genome.wustl.edu	37	X	46360377	46360377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039891.2	-1	validated	p.R216I	0.437	268	0%	152	30.3%	3	0%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	superfamily_SSF57667
SLC9A7	84679	genome.wustl.edu	37	X	46495074	46495074	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032591.1	-1	reviewed	p.V541	0.983	94	0%	53	28.3%	1	0%	-	-	-	NULL
SLC9A7	84679	genome.wustl.edu	37	X	46502763	46502763	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032591.1	-1	reviewed	p.Q507	1.000	62	0%	31	29%	6	100%	-	-	-	HMMPfam_Na_H_Exchanger
RP2	6102	genome.wustl.edu	37	X	46712962	46712962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006915.2	+1	reviewed	p.R52C	1.000	81	0%	48	41.7%	11	81.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RP2	6102	genome.wustl.edu	37	X	46713115	46713115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006915.2	+1	reviewed	p.R103W	1.000	126	0%	65	29.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CARP,HMMPfam_TBCC
RP2	6102	genome.wustl.edu	37	X	46713189	46713189	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006915.2	+1	reviewed	p.V127	1.000	142	0%	75	22.7%	9	0%	-	-	-	HMMSmart_CARP,HMMPfam_TBCC
RBM10	8241	genome.wustl.edu	37	X	47006895	47006895	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005676.3	+1	reviewed	p.R5	1.000	99	0%	157	32.5%	49	0%	-	-	-	NULL
UBA1	7317	genome.wustl.edu	37	X	47060332	47060332	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003334.3	+1	reviewed	p.R174*	0.984	98	0%	141	27.7%	182	3.2%	-	-	-	HMMPfam_ThiF,superfamily_MoeB
USP11	8237	genome.wustl.edu	37	X	47100702	47100702	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004651.3	+1	reviewed	p.T334	0.000	73	1.4%	107	42.1%	89	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
USP11	8237	genome.wustl.edu	37	X	47107095	47107095	+	Silent	SNP	C	C	T	rs182381425	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004651.3	+1	reviewed	p.I917	0.985	89	0%	157	28.7%	112	73.2%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZNF157	7712	genome.wustl.edu	37	X	47271933	47271933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003446.3	+1	reviewed	p.R154I	0.004	110	0%	99	36.4%	0	-	possibly_damaging(0.893)	tolerated(0.14)	deleterious(0.601)	superfamily_SSF57667
ZNF41	7592	genome.wustl.edu	37	X	47308502	47308502	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007130.2	-1	reviewed	p.N223H	0.015	278	0%	182	24.7%	1	0%	probably_damaging(0.983)	tolerated(0.14)	deleterious(0.678)	NULL
ARAF	369	genome.wustl.edu	37	X	47426444	47426444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001654.3	+1	reviewed	p.V263M	0.002	79	0%	108	25%	36	0%	benign(0.026)	tolerated(0.24)	neutral(0.038)	NULL
ARAF	369	genome.wustl.edu	37	X	47430284	47430284	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001654.3	+1	reviewed	p.F520C	1.000	113	0%	175	28%	62	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Kinase_like,HMMPfam_Pkinase
SYN1	6853	genome.wustl.edu	37	X	47464451	47464451	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006950.3	-1	reviewed	p.R234*	1.000	234	0.4%	151	35.8%	6	0%	-	-	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
SYN1	6853	genome.wustl.edu	37	X	47479089	47479089	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006950.3	-1	reviewed	p.F13L	1.000	11	0%	17	52.9%	2	50%	possibly_damaging(0.93)	tolerated(0.12)	deleterious(0.637)	HMMPfam_Synapsin_N
ZNF182	7569	genome.wustl.edu	37	X	47836137	47836137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006962.1	-1	reviewed	p.R450I	1.000	136	0%	98	13.3%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47918632	47918632	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037735.2	-1	validated	p.K400T	1.000	124	0%	64	34.4%	3	0%	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47919190	47919190	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037735.2	-1	validated	p.K214T	0.000	113	0%	77	39%	2	0%	benign(0.003)	-	-	NULL
ZNF630	57232	genome.wustl.edu	37	X	47920307	47920307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001037735.2	-1	validated	p.E11D	0.706	110	0%	82	34.1%	4	0%	possibly_damaging(0.904)	tolerated(0.07)	deleterious(0.677)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SSX5	6758	genome.wustl.edu	37	X	48054751	48054751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021015.3	-1	reviewed	p.S15F	0.000	334	0%	183	25.1%	0	-	benign(0.141)	deleterious(0.04)	neutral(0.361)	NULL
SSX4	6759	genome.wustl.edu	37	X	48244829	48244829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005636.3	+1	reviewed	p.K74Q	0.000	558	0%	289	16.6%	0	-	possibly_damaging(0.568)	tolerated(0.34)	neutral(0.217)	HMMSmart_KRAB,superfamily_Krueppel-associated_box
SSX4	6759	genome.wustl.edu	37	X	48244871	48244871	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005636.3	+1	reviewed	p.R88*	0.000	535	0%	286	14%	0	-	-	-	-	NULL
SSX4B	548313	genome.wustl.edu	37	X	48269439	48269439	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001034832.2	-1	reviewed	p.R88*	0.000	384	0%	247	23.9%	0	-	-	-	-	NULL
SLC38A5	92745	genome.wustl.edu	37	X	48324664	48324664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033518.2	-1	validated	p.A122V	0.000	103	0%	127	31.5%	7	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Aa_trans
SLC38A5	92745	genome.wustl.edu	37	X	48325238	48325238	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033518.2	-1	validated	p.A89	0.021	67	0%	96	36.5%	17	0%	-	-	-	HMMPfam_Aa_trans
FTSJ1	24140	genome.wustl.edu	37	X	48337472	48337472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012280.2	+1	reviewed	p.A110V	0.996	111	0%	150	22.7%	55	85.4%	benign(0.022)	tolerated(0.2)	neutral(0.050)	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
FTSJ1	24140	genome.wustl.edu	37	X	48340894	48340894	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012280.2	+1	reviewed	p.D253	0.990	115	0%	155	38.1%	70	0%	-	-	-	NULL
PORCN	64840	genome.wustl.edu	37	X	48369729	48369729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_203475.1	+1	reviewed	p.F61L	1.000	163	0%	281	35.9%	4	75%	benign(0.003)	tolerated(1)	-	NULL
WAS	7454	genome.wustl.edu	37	X	48544514	48544514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000377.2	+1	reviewed	p.D184Y	1.000	125	0%	243	29.6%	12	0%	possibly_damaging(0.812)	tolerated(0.06)	deleterious(0.628)	NULL
HDAC6	10013	genome.wustl.edu	37	X	48664870	48664870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006044.2	+1	reviewed	p.P178L	1.000	86	0%	104	31.7%	34	85.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
TIMM17B	10245	genome.wustl.edu	37	X	48754133	48754133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005834.3	-1	reviewed	p.R12Q	1.000	59	0%	98	30.6%	81	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Tim17
PQBP1	10084	genome.wustl.edu	37	X	48755855	48755855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001032381.1	+1	reviewed	p.E21D	1.000	154	0%	300	24.7%	150	70.6%	benign(0.009)	tolerated(0.64)	neutral(0.004)	NULL
SLC35A2	7355	genome.wustl.edu	37	X	48762568	48762568	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005660.1	-1	provisional	p.V206	0.974	18	0%	28	39.3%	35	0%	-	-	-	HMMPfam_Nuc_sug_transp
OTUD5	55593	genome.wustl.edu	37	X	48791820	48791820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017602.3	-1	reviewed	p.R331W	1.000	98	0%	67	35.8%	72	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OTU,superfamily_Cysteine proteinases
KCND1	3750	genome.wustl.edu	37	X	48826150	48826150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004979.4	-1	reviewed	p.E177K	1.000	15	0%	17	47.1%	1	100%	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	NULL
GRIPAP1	56850	genome.wustl.edu	37	X	48831642	48831642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020137.3	-1	reviewed	p.E786D	1.000	83	0%	117	12%	67	0%	possibly_damaging(0.653)	tolerated(0.31)	neutral(0.257)	NULL
GRIPAP1	56850	genome.wustl.edu	37	X	48837844	48837844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020137.3	-1	reviewed	p.K605R	1.000	119	0%	115	25.2%	78	78.2%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
GRIPAP1	56850	genome.wustl.edu	37	X	48849958	48849958	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020137.3	-1	reviewed	p.E113	1.000	85	0%	77	31.2%	16	0%	-	-	-	NULL
TFE3	7030	genome.wustl.edu	37	X	48891050	48891050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006521.4	-1	reviewed	p.R356C	1.000	125	0%	209	26.3%	69	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
PRICKLE3	4007	genome.wustl.edu	37	X	49033462	49033462	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000453382	-1	known	p.A361V	0.675	10	0%	13	46.2%	11	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SYP	6855	genome.wustl.edu	37	X	49054104	49054104	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000466635	-1	known	p.L99	0.000	9	0.000	39	0.256	0	-	-	-	-	NULL
CACNA1F	778	genome.wustl.edu	37	X	49070354	49070354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005183.2	-1	reviewed	p.F1250L	0.616	78	0%	80	30%	1	100%	benign(0.429)	deleterious(0.04)	deleterious(0.488)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49071984	49071984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005183.2	-1	reviewed	p.D1097N	1.000	97	0%	121	37.2%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
FOXP3	50943	genome.wustl.edu	37	X	49112257	49112257	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014009.3	-1	reviewed	p.C218	0.997	65	0%	139	28.1%	6	0%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1
PPP1R3F	89801	genome.wustl.edu	37	X	49157907	49157907	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000471261	+1	known	p.*157S	0.001	49	0%	59	23.7%	1	0%	unknown(0)	-	-	NULL
PAGE4	9506	genome.wustl.edu	37	X	49595684	49595684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007003.2	+1	reviewed	p.E55K	0.001	123	0%	121	30.6%	0	-	possibly_damaging(0.763)	-	-	HMMPfam_GAGE
CLCN5	1184	genome.wustl.edu	37	X	49837154	49837154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127898.1	+1	reviewed	p.K109T	1.000	434	0%	270	37%	0	-	benign(0.08)	tolerated(0.14)	neutral(0.255)	superfamily_Clc chloride channel
CLCN5	1184	genome.wustl.edu	37	X	49854987	49854987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127898.1	+1	reviewed	p.M653I	1.000	148	0%	55	21.8%	4	0%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
AKAP4	8852	genome.wustl.edu	37	X	49957441	49957441	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003886.2	-1	reviewed	p.N641	0.003	152	0%	72	29.2%	0	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP4	8852	genome.wustl.edu	37	X	49958253	49958253	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003886.2	-1	reviewed	p.L371	0.011	92	0%	38	26.3%	0	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP4	8852	genome.wustl.edu	37	X	49963397	49963397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003886.2	-1	reviewed	p.D12N	1.000	167	0%	135	36.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50051794	50051794	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033031.2	+1	reviewed	p.E209*	0.000	76	0%	36	30.6%	0	-	-	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50052433	50052433	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033031.2	+1	reviewed	p.E422*	0.002	62	0%	24	41.7%	0	-	-	-	-	NULL
CCNB3	85417	genome.wustl.edu	37	X	50053433	50053433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033031.2	+1	reviewed	p.S755Y	0.000	43	0%	19	47.4%	0	-	benign(0.08)	deleterious(0)	neutral(0.450)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50089729	50089729	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033031.2	+1	reviewed	p.E1245*	1.000	181	0%	92	35.9%	0	-	-	-	-	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
SHROOM4	57477	genome.wustl.edu	37	X	50351086	50351086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020717.3	-1	reviewed	p.S1019Y	1.000	84	0%	73	34.2%	1	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51487441	51487441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018094.4	+1	reviewed	p.R240I	1.000	134	0%	153	33.3%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_GTP_EFTU,superfamily_SSF52540
SSX7	280658	genome.wustl.edu	37	X	52681987	52681987	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173358.2	-1	reviewed	p.K39	0.004	587	0%	280	30.4%	0	-	-	-	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
XAGE5	170627	genome.wustl.edu	37	X	52842262	52842262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130775.2	+1	reviewed	p.E57D	0.001	250	0%	262	40.5%	0	-	benign(0.019)	tolerated(0.47)	neutral(0.012)	HMMPfam_GAGE
GPR173	54328	genome.wustl.edu	37	X	53106712	53106712	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018969.5	+1	reviewed	p.I303	0.177	59	0%	96	37.5%	9	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TSPYL2	64061	genome.wustl.edu	37	X	53112457	53112457	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022117.3	+1	reviewed	p.I259	0.965	25	0%	60	33.3%	55	0%	-	-	-	HMMPfam_NAP
KDM5C	8242	genome.wustl.edu	37	X	53226043	53226043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004187.3	-1	reviewed	p.R936C	1.000	24	0%	63	33.3%	192	53.6%	probably_damaging(0.988)	tolerated(0.05)	deleterious(0.783)	HMMPfam_PLU-1
IQSEC2	23096	genome.wustl.edu	37	X	53267393	53267393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001111125.1	-1	validated	p.R1071C	1.000	94	0%	148	31.1%	8	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_PH,superfamily_SSF50729
SMC1A	8243	genome.wustl.edu	37	X	53440245	53440245	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000428014	-1	known	p.L189*	1.000	273	0%	295	30.2%	45	35.5%	benign(0.183)	tolerated(0.19)	neutral(0.067)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
HUWE1	10075	genome.wustl.edu	37	X	53562406	53562406	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000427052	-1	known	p.L3230I	1.000	281	0%	215	29.3%	189	0%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53576064	53576064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.R3297S	1.000	86	0%	64	18.8%	83	0%	possibly_damaging(0.816)	tolerated(0.11)	deleterious(0.580)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53579836	53579836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.R2838K	1.000	88	0%	44	29.5%	33	0%	benign(0.097)	tolerated(0.91)	neutral(0.007)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53588830	53588830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.M2465T	1.000	169	0%	108	34.3%	101	0%	benign(0.043)	tolerated(0.12)	neutral(0.263)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53591584	53591584	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.S2327*	1.000	120	0%	124	26.6%	57	0%	-	-	-	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53595719	53595719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.R2214W	1.000	212	0.5%	130	12.3%	47	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53596641	53596641	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000427052	-1	known	p.E1187*	1.000	110	0%	111	28.8%	42	0%	-	-	-	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53607797	53607797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.G1904*	1.000	36	0%	74	41.9%	27	0%	-	-	-	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53610571	53610571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.L1823F	1.000	156	0%	197	29.4%	38	84.2%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53627240	53627240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031407.4	-1	reviewed	p.M1001V	1.000	169	0%	68	26.5%	27	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
LOC100288560	100288560	genome.wustl.edu	37	X	53852479	53852479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002344197.1	+1	model	p.S33L	0.002	56	1.8%	33	24.2%	0	-	-	-	-	NULL
PHF8	23133	genome.wustl.edu	37	X	54019239	54019239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015107.2	-1	reviewed	p.D554Y	1.000	113	0%	94	31.9%	40	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WNK3	65267	genome.wustl.edu	37	X	54265457	54265457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020922.4	-1	reviewed	p.H1243N	1.000	96	0%	80	30%	0	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	NULL
WNK3	65267	genome.wustl.edu	37	X	54275489	54275489	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020922.4	-1	reviewed	p.E1098*	1.000	255	0%	144	32.6%	0	-	-	-	-	NULL
WNK3	65267	genome.wustl.edu	37	X	54275842	54275842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020922.4	-1	reviewed	p.S980Y	0.037	160	0%	66	33.3%	0	-	benign(0.066)	deleterious(0)	neutral(0.449)	NULL
WNK3	65267	genome.wustl.edu	37	X	54360050	54360050	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020922.4	-1	reviewed	p.G19	1.000	72	0%	40	45%	0	-	-	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54784151	54784151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198510.2	-1	reviewed	p.P786S	0.014	218	0%	277	37.5%	0	-	benign(0.038)	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54785285	54785285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198510.2	-1	reviewed	p.S408G	0.631	51	0%	40	37.5%	0	-	possibly_damaging(0.95)	tolerated(0.09)	deleterious(0.690)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ITIH6	347365	genome.wustl.edu	37	X	54823422	54823422	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198510.2	-1	reviewed	p.I70	1.000	81	0%	75	30.7%	0	-	-	-	-	HMMSmart_VIT,HMMPfam_VIT
SNORA11	677799	genome.wustl.edu	37	X	54840831	54840831	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_002953.1	+1	validated	NULL	0.006	9	0.000	7	0.571	5	80%	-	-	-	-
TRO	7216	genome.wustl.edu	37	X	54950197	54950197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039705.1	+1	reviewed	p.R411Q	0.997	47	0%	41	29.3%	0	-	benign(0.155)	deleterious(0.04)	neutral(0.362)	NULL
TRO	7216	genome.wustl.edu	37	X	54954151	54954151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039705.1	+1	reviewed	p.F605L	1.000	80	0%	51	23.5%	3	0%	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	HMMPfam_MAGE
TRO	7216	genome.wustl.edu	37	X	54955914	54955914	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039705.1	+1	reviewed	p.F919	0.001	98	0%	72	43.1%	2	0%	-	-	-	NULL
PFKFB1	5207	genome.wustl.edu	37	X	54982653	54982653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002625.2	-1	reviewed	p.E191*	1.000	158	0%	129	30.2%	0	-	-	-	-	HMMPfam_6PF2K,superfamily_SSF52540
PAGE5	90737	genome.wustl.edu	37	X	55247850	55247850	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_130467.3	+1	reviewed	p.E32A	0.001	250	0%	200	29.5%	0	-	benign(0.055)	tolerated(0.45)	neutral(0.015)	HMMPfam_GAGE
MAGEH1	28986	genome.wustl.edu	37	X	55479357	55479357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014061.3	+1	reviewed	p.R184C	0.009	92	0%	95	25.3%	34	26.4%	benign(0.392)	tolerated(0.14)	neutral(0.375)	NULL
USP51	158880	genome.wustl.edu	37	X	55513394	55513394	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201286.3	-1	validated	p.T660I	1.000	165	0%	260	38.8%	2	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_SSF54001
USP51	158880	genome.wustl.edu	37	X	55513478	55513478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201286.3	-1	validated	p.R632I	0.982	188	0%	289	35.6%	1	0%	benign(0.022)	tolerated(0.44)	neutral(0.014)	HMMPfam_UCH,superfamily_SSF54001
USP51	158880	genome.wustl.edu	37	X	55514676	55514676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_201286.3	-1	validated	p.S233P	1.000	125	0%	212	34.9%	0	-	possibly_damaging(0.949)	tolerated(0.08)	deleterious(0.693)	NULL
FOXR2	139628	genome.wustl.edu	37	X	55650263	55650263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198451.3	+1	validated	p.S40Y	0.000	97	0%	34	29.4%	0	-	benign(0.229)	tolerated(0.25)	neutral(0.060)	NULL
UBQLN2	29978	genome.wustl.edu	37	X	56590956	56590956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_013444.3	+1	reviewed	p.R217I	1.000	77	0%	122	29.5%	34	73.5%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMSmart_SM00727,superfamily_ARM repeat
SPIN3	169981	genome.wustl.edu	37	X	57021268	57021268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010862.2	-1	validated	p.R38M	0.631	152	0%	217	14.7%	3	0%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
SPIN2B	474343	genome.wustl.edu	37	X	57146746	57146746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006681.1	-1	validated	p.S106F	0.999	205	0%	354	22.6%	0	-	possibly_damaging(0.837)	deleterious(0.01)	deleterious(0.725)	NULL
FAAH2	158584	genome.wustl.edu	37	X	57458375	57458375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174912.3	+1	reviewed	p.L341I	0.146	113	0%	64	28.1%	7	85.7%	benign(0.11)	tolerated(0.35)	neutral(0.029)	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes
FAAH2	158584	genome.wustl.edu	37	X	57515326	57515326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_174912.3	+1	reviewed	p.E520D	1.000	157	0%	108	24.1%	12	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Amidase signature (AS) enzymes
ARHGEF9	23229	genome.wustl.edu	37	X	62898399	62898399	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015185.2	-1	reviewed	p.C205*	0.998	110	0%	56	23.2%	10	0%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ARHGEF9	23229	genome.wustl.edu	37	X	62944504	62944504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015185.2	-1	reviewed	p.D33N	1.000	109	0%	45	31.1%	8	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
FAM123B	139285	genome.wustl.edu	37	X	63411410	63411410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152424.3	-1	reviewed	p.R586Q	0.061	64	0%	37	24.3%	5	100%	benign(0.006)	tolerated(0.49)	neutral(0.011)	NULL
FAM123B	139285	genome.wustl.edu	37	X	63412582	63412582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152424.3	-1	reviewed	p.K195N	0.030	76	0%	64	34.4%	1	0%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_WTX
ZC4H2	55906	genome.wustl.edu	37	X	64140096	64140096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018684.2	-1	validated	p.N88S	1.000	186	0%	157	31.2%	11	0%	benign(0.115)	tolerated(0.85)	neutral(0.009)	HMMPfam_zf-C4H2
ZC3H12B	340554	genome.wustl.edu	37	X	64719817	64719817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010888.3	+1	reviewed	p.F335L	1.000	119	0%	66	40.9%	4	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64722072	64722072	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001010888.3	+1	reviewed	p.S487	1.000	160	0%	84	27.4%	1	0%	-	-	-	NULL
LOC100288788	100288788	genome.wustl.edu	37	X	65176881	65176881	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343822.1	-1	model	p.F53C	1.000	141	0%	80	22.5%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
HEPH	9843	genome.wustl.edu	37	X	65413379	65413379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138737.3	+1	reviewed	p.R426Q	0.997	60	0%	59	28.8%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65476059	65476059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138737.3	+1	reviewed	p.F931C	1.000	247	0%	77	29.9%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Cupredoxins
AR	367	genome.wustl.edu	37	X	66931477	66931477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000044.2	+1	reviewed	p.E707*	1.000	89	1.1%	35	31.4%	12	0%	-	-	-	HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
AR	367	genome.wustl.edu	37	X	66942713	66942713	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000044.2	+1	reviewed	p.R832*	1.000	129	0%	56	30.4%	7	100%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
OPHN1	4983	genome.wustl.edu	37	X	67432023	67432023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002547.2	-1	reviewed	p.S210Y	1.000	141	0%	164	27.4%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
OPHN1	4983	genome.wustl.edu	37	X	67433725	67433725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002547.2	-1	reviewed	p.K192N	1.000	176	0%	201	34.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YIPF6	286451	genome.wustl.edu	37	X	67731808	67731808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173834.2	+1	provisional	p.R59C	1.000	191	0%	174	32.2%	12	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
YIPF6	286451	genome.wustl.edu	37	X	67738635	67738635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173834.2	+1	provisional	p.L97I	1.000	787	0%	646	25.2%	11	90.9%	probably_damaging(0.986)	tolerated(0.11)	deleterious(0.706)	HMMPfam_Yip1
YIPF6	286451	genome.wustl.edu	37	X	67741326	67741326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173834.2	+1	provisional	p.L141I	1.000	387	0%	200	24%	19	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Yip1
STARD8	9754	genome.wustl.edu	37	X	67941538	67941538	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142503.2	+1	reviewed	p.A803	1.000	101	0%	133	37.6%	2	50%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
FAM155B	27112	genome.wustl.edu	37	X	68725597	68725597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015686.2	+1	validated	p.E158K	0.315	37	0%	50	22%	3	0%	benign(0.15)	tolerated(0.31)	neutral(0.040)	NULL
FAM155B	27112	genome.wustl.edu	37	X	68749484	68749484	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015686.2	+1	validated	p.A368	0.995	231	0%	251	30.3%	9	100%	-	-	-	NULL
EDA	1896	genome.wustl.edu	37	X	69255291	69255291	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001399.4	+1	reviewed	p.I336	0.542	99	0%	62	19.4%	6	33.3%	-	-	-	HMMPfam_TNF,superfamily_TNF-like
OTUD6A	139562	genome.wustl.edu	37	X	69282633	69282633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_207320.1	+1	provisional	p.R87W	0.001	24	0%	50	34%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
IGBP1	3476	genome.wustl.edu	37	X	69354515	69354515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001551.2	+1	reviewed	p.N111H	0.970	131	0%	141	41.8%	46	0%	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMPfam_TAP42
AWAT1	158833	genome.wustl.edu	37	X	69459659	69459659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013579.2	+1	reviewed	p.R236M	0.736	260	0%	139	36.7%	0	-	benign(0.13)	tolerated(0.18)	neutral(0.067)	HMMPfam_DAGAT
P2RY4	5030	genome.wustl.edu	37	X	69479135	69479135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002565.3	-1	reviewed	p.L114I	1.000	68	0%	97	42.3%	0	-	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	HMMPfam_7tm_1,superfamily_SSF81321
RAB41	347517	genome.wustl.edu	37	X	69504449	69504449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001032726.2	+1	reviewed	p.E209K	0.108	149	0%	246	32.1%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF4A	24137	genome.wustl.edu	37	X	69595064	69595064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012310.4	+1	reviewed	p.R597C	1.000	101	0%	173	27.2%	23	95.6%	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
GDPD2	54857	genome.wustl.edu	37	X	69646998	69646998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017711.3	+1	reviewed	p.E238D	1.000	131	0.8%	128	35.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
SLC7A3	84889	genome.wustl.edu	37	X	70148306	70148306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001048164.2	-1	reviewed	p.S236I	0.946	88	0%	94	28.7%	0	-	benign(0.009)	tolerated(0.07)	neutral(0.320)	NULL
IL2RG	3561	genome.wustl.edu	37	X	70331381	70331381	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000206.2	-1	reviewed	p.K3N	0.591	239	0%	233	31.3%	83	0%	unknown(0)	deleterious(0)	-	NULL
MED12	9968	genome.wustl.edu	37	X	70338656	70338656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005120.2	+1	reviewed	p.R18W	1.000	25	0%	24	45.8%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MED12	9968	genome.wustl.edu	37	X	70339568	70339568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005120.2	+1	reviewed	p.E79D	1.000	105	0%	134	40.3%	9	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
MED12	9968	genome.wustl.edu	37	X	70344018	70344018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005120.2	+1	reviewed	p.R585Q	0.993	88	0%	120	28.3%	16	87.5%	benign(0.005)	tolerated(0.61)	neutral(0.004)	NULL
MED12	9968	genome.wustl.edu	37	X	70350002	70350002	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005120.2	+1	reviewed	p.R1329*	1.000	67	0%	64	23.4%	31	0%	-	-	-	NULL
MED12	9968	genome.wustl.edu	37	X	70356385	70356385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005120.2	+1	reviewed	p.E1760D	1.000	49	0%	61	24.6%	13	0%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70389234	70389234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018977.3	+1	reviewed	p.V592I	1.000	97	0%	110	32.7%	2	0%	benign(0.107)	tolerated(0.16)	neutral(0.068)	HMMPfam_COesterase,superfamily_SSF53474
ZMYM3	9203	genome.wustl.edu	37	X	70470035	70470035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005096.3	-1	reviewed	p.K364N	1.000	92	0%	117	32.5%	27	0%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	HMMPfam_zf-FCS,HMMSmart_SM00746
ZMYM3	9203	genome.wustl.edu	37	X	70472663	70472663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005096.3	-1	reviewed	p.S148Y	0.914	66	0%	126	31.7%	15	0%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	NULL
TAF1	6872	genome.wustl.edu	37	X	70598278	70598278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004606.3	+1	reviewed	p.P396H	0.526	250	0%	187	33.7%	7	0%	benign(0.27)	tolerated(0.37)	neutral(0.048)	NULL
TAF1	6872	genome.wustl.edu	37	X	70602988	70602988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004606.3	+1	reviewed	p.L661I	1.000	250	0%	157	29.3%	6	0%	possibly_damaging(0.866)	tolerated(0.12)	deleterious(0.596)	NULL
TAF1	6872	genome.wustl.edu	37	X	70608641	70608641	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004606.3	+1	reviewed	p.E895*	1.000	252	0%	201	30.3%	19	0%	-	-	-	NULL
TAF1	6872	genome.wustl.edu	37	X	70618498	70618498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004606.3	+1	reviewed	p.R1253G	1.000	214	0%	172	25%	20	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OGT	8473	genome.wustl.edu	37	X	70775921	70775921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181672.2	+1	reviewed	p.R348C	1.000	131	0%	110	21.8%	65	0%	possibly_damaging(0.86)	tolerated(0.06)	deleterious(0.655)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
OGT	8473	genome.wustl.edu	37	X	70782979	70782979	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_181672.2	+1	reviewed	e17-1	1.000	156	0%	99	35.4%	0	-	-	-	-	-
ACRC	93953	genome.wustl.edu	37	X	70823684	70823684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052957.4	+1	validated	p.S186L	0.069	169	0%	121	24.8%	1	0%	unknown(0)	deleterious(0.01)	-	NULL
NHSL2	340527	genome.wustl.edu	37	X	71359689	71359689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001013627.2	+1	provisional	p.F398C	0.137	113	0%	98	28.6%	4	25%	benign(0.075)	tolerated(0.1)	neutral(0.291)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71426486	71426486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017669.2	-1	validated	p.E711K	0.998	175	0%	63	34.9%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHKA1	5255	genome.wustl.edu	37	X	71802268	71802268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002637.3	-1	reviewed	p.D1160Y	1.000	89	0%	50	38%	16	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_PHK_AB
PHKA1	5255	genome.wustl.edu	37	X	71802425	71802425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002637.3	-1	reviewed	p.F1107L	1.000	81	0%	50	22%	14	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHK_AB
PHKA1	5255	genome.wustl.edu	37	X	71823031	71823031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002637.3	-1	reviewed	p.S952L	0.997	170	0.6%	92	12%	21	0%	benign(0.419)	tolerated(0.09)	neutral(0.432)	HMMPfam_PHK_AB
PHKA1	5255	genome.wustl.edu	37	X	71886005	71886005	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002637.3	-1	reviewed	p.L287R	1.000	96	0%	39	33.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
CDX4	1046	genome.wustl.edu	37	X	72674387	72674387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005193.1	+1	provisional	p.P274H	0.952	124	0%	129	31.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CHIC1	53344	genome.wustl.edu	37	X	72900819	72900819	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001039840.2	+1	validated	p.Y218*	1.000	207	0%	133	42.1%	2	0%	-	-	-	NULL
SLC16A2	6567	genome.wustl.edu	37	X	73744203	73744203	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006517.3	+1	reviewed	p.S269	1.000	122	0%	110	40.9%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC16A2	6567	genome.wustl.edu	37	X	73744452	73744452	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006517.3	+1	reviewed	p.L352	1.000	134	0%	106	34%	16	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KIAA2022	340533	genome.wustl.edu	37	X	73962112	73962112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008537.2	-1	validated	p.K760N	1.000	104	0%	44	15.9%	0	-	possibly_damaging(0.671)	deleterious(0)	deleterious(0.682)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73963057	73963057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008537.2	-1	validated	p.F445L	1.000	168	0%	116	27.6%	0	-	benign(0.135)	deleterious(0.03)	neutral(0.376)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73963300	73963300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001008537.2	-1	validated	p.F364L	1.000	154	0%	57	17.5%	0	-	benign(0.135)	tolerated(0.06)	neutral(0.334)	NULL
ABCB7	22	genome.wustl.edu	37	X	74273249	74273249	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004299.3	-1	reviewed	p.E740*	1.000	306	0%	159	25.2%	13	0%	-	-	-	NULL
UPRT	139596	genome.wustl.edu	37	X	74494213	74494213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145052.3	+1	reviewed	p.N42D	0.002	53	0%	46	17.4%	13	38.4%	benign(0.076)	tolerated(0.07)	neutral(0.325)	NULL
ZDHHC15	158866	genome.wustl.edu	37	X	74644552	74644552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144969.2	-1	reviewed	p.F224C	1.000	158	0%	109	20.2%	0	-	unknown(0)	tolerated(0.4)	-	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75003441	75003441	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138703.4	-1	validated	p.E482	0.676	102	0%	68	26.5%	0	-	-	-	-	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75003857	75003857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138703.4	-1	validated	p.E344*	0.983	85	0%	51	11.8%	0	-	-	-	-	HMMPfam_MAGE
MAGEE2	139599	genome.wustl.edu	37	X	75004607	75004607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138703.4	-1	validated	p.A94T	0.614	37	0%	22	45.5%	0	-	probably_damaging(0.98)	tolerated(0.1)	deleterious(0.710)	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75649108	75649108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020932.2	+1	reviewed	p.A262D	0.001	20	0%	21	38.1%	3	100%	benign(0.083)	tolerated(0.06)	neutral(0.329)	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75649815	75649815	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020932.2	+1	reviewed	p.L498	0.241	61	0%	133	21.8%	6	83.3%	-	-	-	HMMPfam_MAGE
ATRX	546	genome.wustl.edu	37	X	76888805	76888805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000489.3	-1	reviewed	p.D1675G	1.000	217	0%	252	30.2%	33	0%	probably_damaging(0.983)	tolerated(0.13)	deleterious(0.681)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76920172	76920172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000489.3	-1	reviewed	p.R1302I	0.619	547	0%	280	31.1%	7	0%	probably_damaging(0.983)	tolerated(0.16)	deleterious(0.488)	NULL
ATRX	546	genome.wustl.edu	37	X	76938307	76938307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000489.3	-1	reviewed	p.S814Y	1.000	183	0%	95	28.4%	5	60%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
ATP7A	538	genome.wustl.edu	37	X	77245008	77245008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000052.4	+1	reviewed	p.S297N	0.998	155	0%	94	27.7%	1	0%	benign(0.141)	tolerated(0.24)	neutral(0.050)	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1
ATP7A	538	genome.wustl.edu	37	X	77254093	77254093	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000052.4	+1	reviewed	p.K485	1.000	148	0%	99	34.3%	0	-	-	-	-	superfamily_HMA heavy metal-associated domain
ATP7A	538	genome.wustl.edu	37	X	77298248	77298248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000052.4	+1	reviewed	p.D1323N	1.000	175	0%	97	29.9%	8	87.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
LOC100289421	100289421	genome.wustl.edu	37	X	77359778	77359778	+	Missense_Mutation	SNP	C	C	T	rs192936390	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343831.1	-1	model	p.R54Q	0.000	30	0%	62	41.9%	300	0%	-	-	-	NULL
TAF9B	51616	genome.wustl.edu	37	X	77393484	77393484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015975.4	-1	reviewed	p.S82Y	1.000	165	0%	256	33.2%	20	0%	possibly_damaging(0.598)	deleterious(0)	deleterious(0.651)	HMMPfam_TFIID-31kDa
TAF9B	51616	genome.wustl.edu	37	X	77394364	77394364	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_015975.4	-1	reviewed	p.N37H	1.000	172	0%	325	32.3%	7	0%	benign(0.045)	deleterious(0)	neutral(0.447)	HMMPfam_TFIID-31kDa,superfamily_Histone-fold
CYSLTR1	10800	genome.wustl.edu	37	X	77528306	77528306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006639.2	-1	reviewed	p.S313Y	1.000	128	0%	73	34.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CYSLTR1	10800	genome.wustl.edu	37	X	77528383	77528383	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006639.2	-1	reviewed	p.N287	1.000	120	0%	70	12.9%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CYSLTR1	10800	genome.wustl.edu	37	X	77528769	77528769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006639.2	-1	reviewed	p.L159I	1.000	131	0%	94	24.5%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR174	84636	genome.wustl.edu	37	X	78426662	78426662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032553.1	+1	validated	p.R53Q	1.000	195	0%	91	35.2%	1	0%	possibly_damaging(0.927)	deleterious(0.04)	deleterious(0.724)	HMMPfam_7tm_1,superfamily_SSF81321
ITM2A	9452	genome.wustl.edu	37	X	78616853	78616853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004867.4	-1	reviewed	p.R226C	1.000	86	0%	69	33.3%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BRICHOS
TBX22	50945	genome.wustl.edu	37	X	79286448	79286448	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001109878.1	+1	reviewed	p.S467	0.989	226	0%	130	10%	0	-	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79947636	79947636	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153252.4	-1	reviewed	p.E1093*	1.000	180	0%	97	24.7%	5	0%	-	-	-	NULL
BRWD3	254065	genome.wustl.edu	37	X	79973250	79973250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153252.4	-1	reviewed	p.S685R	1.000	153	0%	175	37.1%	6	100%	probably_damaging(0.983)	tolerated(0.48)	neutral(0.440)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
BRWD3	254065	genome.wustl.edu	37	X	79979262	79979262	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153252.4	-1	reviewed	p.S545	1.000	164	0%	93	21.5%	3	0%	-	-	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
BRWD3	254065	genome.wustl.edu	37	X	79985481	79985481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153252.4	-1	reviewed	p.R389I	1.000	295	0%	207	23.7%	2	0%	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
BRWD3	254065	genome.wustl.edu	37	X	79999589	79999589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153252.4	-1	reviewed	p.R252Q	1.000	111	0%	64	28.1%	4	0%	probably_damaging(0.959)	tolerated(0.65)	neutral(0.406)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
HMGN5	79366	genome.wustl.edu	37	X	80370241	80370241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_030763.2	-1	reviewed	p.E252D	0.000	774	0%	594	28.3%	24	100%	unknown(0)	tolerated(0.53)	-	NULL
SH3BGRL	6451	genome.wustl.edu	37	X	80532569	80532569	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003022.2	+1	validated	p.E44D	0.991	126	0%	53	37.7%	113	0%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_SH3BGR,superfamily_Thioredoxin-like
CYLC1	1538	genome.wustl.edu	37	X	83128849	83128849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021118.1	+1	provisional	p.K378T	0.007	48	0%	63	33.3%	0	-	unknown(0)	tolerated(0.33)	-	NULL
CYLC1	1538	genome.wustl.edu	37	X	83129560	83129560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021118.1	+1	provisional	p.S615F	0.023	85	0%	49	32.7%	0	-	unknown(0)	tolerated(0.25)	-	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83361979	83361979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014496.4	-1	reviewed	p.S394Y	0.523	139	0%	82	32.9%	0	-	benign(0.257)	deleterious(0.01)	neutral(0.432)	HMMPfam_Pkinase_C
RPS6KA6	27330	genome.wustl.edu	37	X	83372110	83372110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014496.4	-1	reviewed	p.L303I	1.000	89	0%	44	20.5%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPS6KA6	27330	genome.wustl.edu	37	X	83372419	83372419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014496.4	-1	reviewed	p.R278K	1.000	214	0%	127	18.1%	0	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPS6KA6	27330	genome.wustl.edu	37	X	83375033	83375033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014496.4	-1	reviewed	p.F217V	1.000	140	0%	81	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HDX	139324	genome.wustl.edu	37	X	83576979	83576979	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144657.4	-1	validated	p.F664Y	1.000	114	0%	47	40.4%	1	0%	benign(0.132)	tolerated(0.75)	neutral(0.012)	NULL
HDX	139324	genome.wustl.edu	37	X	83588844	83588844	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144657.4	-1	validated	p.E583*	1.000	223	0%	52	30.8%	0	-	-	-	-	NULL
HDX	139324	genome.wustl.edu	37	X	83616532	83616532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144657.4	-1	validated	p.C465Y	1.000	132	0%	98	26.5%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
HDX	139324	genome.wustl.edu	37	X	83723827	83723827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144657.4	-1	validated	p.D302Y	1.000	153	0%	120	24.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
APOOL	139322	genome.wustl.edu	37	X	84329385	84329385	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198450.4	+1	validated	p.E236*	0.017	163	0%	88	22.7%	9	0%	-	-	-	NULL
ZNF711	7552	genome.wustl.edu	37	X	84510494	84510494	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021998.4	+1	reviewed	p.D103E	0.996	218	0%	334	32.9%	0	-	benign(0.028)	tolerated(0.28)	neutral(0.033)	HMMPfam_Zfx_Zfy_act
ZNF711	7552	genome.wustl.edu	37	X	84510624	84510624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021998.4	+1	reviewed	p.D147Y	1.000	135	0%	193	28%	0	-	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	HMMPfam_Zfx_Zfy_act
ZNF711	7552	genome.wustl.edu	37	X	84525739	84525739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021998.4	+1	reviewed	p.F397L	1.000	52	0%	13	53.8%	0	-	possibly_damaging(0.882)	tolerated(0.05)	deleterious(0.690)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF711	7552	genome.wustl.edu	37	X	84526237	84526237	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_021998.4	+1	reviewed	p.K563N	1.000	84	0%	44	25%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POF1B	79983	genome.wustl.edu	37	X	84561279	84561279	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024921.3	-1	reviewed	p.R409*	0.564	210	0%	149	32.9%	0	-	-	-	-	NULL
POF1B	79983	genome.wustl.edu	37	X	84606419	84606419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024921.3	-1	reviewed	p.F159L	1.000	332	0%	88	15.9%	0	-	possibly_damaging(0.775)	tolerated(0.34)	neutral(0.311)	NULL
POF1B	79983	genome.wustl.edu	37	X	84614615	84614615	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024921.3	-1	reviewed	p.V126	1.000	296	0%	97	29.9%	1	0%	-	-	-	NULL
POF1B	79983	genome.wustl.edu	37	X	84622761	84622761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024921.3	-1	reviewed	p.S98Y	1.000	223	0%	129	27.1%	0	-	possibly_damaging(0.92)	tolerated(0.06)	deleterious(0.694)	NULL
CHM	1121	genome.wustl.edu	37	X	85218739	85218739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000390.2	-1	reviewed	p.K211N	1.000	150	0%	131	31.3%	1	0%	benign(0.021)	tolerated(0.32)	neutral(0.025)	HMMPfam_GDI,superfamily_SSF51905
DACH2	117154	genome.wustl.edu	37	X	85969668	85969668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053281.3	+1	reviewed	p.A350D	1.000	98	0%	33	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DACH2	117154	genome.wustl.edu	37	X	85994794	85994794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053281.3	+1	reviewed	p.E383D	0.048	182	0%	48	41.7%	1	0%	benign(0.002)	tolerated(0.75)	neutral(0.002)	NULL
DACH2	117154	genome.wustl.edu	37	X	85994850	85994850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_053281.3	+1	reviewed	p.S402Y	1.000	143	0%	45	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86773265	86773265	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_057162.2	+1	reviewed	p.R123	0.000	37	0%	21	33.3%	0	-	-	-	-	NULL
KLHL4	56062	genome.wustl.edu	37	X	86873030	86873030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_057162.2	+1	reviewed	p.L275F	1.000	140	0%	54	9.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
TGIF2LX	90316	genome.wustl.edu	37	X	89177301	89177301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138960.3	+1	reviewed	p.R73W	0.999	132	0%	184	28.8%	0	-	possibly_damaging(0.823)	deleterious(0)	deleterious(0.756)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
PABPC5	140886	genome.wustl.edu	37	X	90691497	90691497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_080832.2	+1	reviewed	p.K307N	1.000	67	0%	105	32.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PCDH11X	27328	genome.wustl.edu	37	X	91090730	91090730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032968.3	+1	reviewed	p.R76Q	0.575	314	0%	168	10.1%	1	100%	probably_damaging(0.992)	tolerated(0.1)	deleterious(0.734)	HMMPfam_Cadherin_2
PCDH11X	27328	genome.wustl.edu	37	X	91131801	91131801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032968.3	+1	reviewed	p.D188N	0.996	135	0%	104	69.2%	1	100%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH11X	27328	genome.wustl.edu	37	X	91133406	91133406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032968.3	+1	reviewed	p.L723M	0.971	145	0%	115	23.5%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDH11X	27328	genome.wustl.edu	37	X	91134112	91134112	+	Missense_Mutation	SNP	C	C	T	rs2563388	bySubmitter	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032968.3	+1	reviewed	p.S958L	1.000	235	0%	208	22.6%	0	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_Protocadherin
DIAPH2	1730	genome.wustl.edu	37	X	96013201	96013201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006729.4	+1	reviewed	p.D131Y	1.000	122	0%	90	23.3%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Drf_GBD
DIAPH2	1730	genome.wustl.edu	37	X	96136632	96136632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006729.4	+1	reviewed	p.H168N	1.000	142	0%	64	20.3%	0	-	unknown(0)	tolerated(0.11)	-	HMMPfam_Drf_GBD
DIAPH2	1730	genome.wustl.edu	37	X	96213131	96213131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006729.4	+1	reviewed	p.R640I	1.000	113	0%	62	29%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PCDH19	57526	genome.wustl.edu	37	X	99661505	99661505	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105243.1	-1	reviewed	p.I697	1.000	132	0%	234	29.1%	11	0%	-	-	-	NULL
PCDH19	57526	genome.wustl.edu	37	X	99662413	99662413	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001105243.1	-1	reviewed	p.R395*	0.999	106	0%	153	29.4%	15	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SYTL4	94121	genome.wustl.edu	37	X	99943340	99943340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000372981	-1	known	p.S338Y	0.116	210	0%	140	32.9%	0	-	unknown(0)	tolerated(0.06)	-	NULL
SYTL4	94121	genome.wustl.edu	37	X	99956660	99956660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129896.2	-1	reviewed	p.K40N	1.000	111	0%	60	35%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger
CSTF2	1478	genome.wustl.edu	37	X	100088237	100088237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001325.2	+1	reviewed	p.D426Y	1.000	139	0%	126	18.3%	35	0%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
NOX1	27035	genome.wustl.edu	37	X	100098945	100098945	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007052.4	-1	reviewed	p.F564C	1.000	217	0%	141	17%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ARL13A	392509	genome.wustl.edu	37	X	100228734	100228734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012990.3	+1	validated	p.R19Q	0.413	176	0%	382	18.8%	0	-	benign(0.023)	tolerated(0.67)	neutral(0.004)	superfamily_SSF52540
ARL13A	392509	genome.wustl.edu	37	X	100245653	100245653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000372953	+1	known	p.S285F	0.000	175	0%	168	19.6%	0	-	unknown(0)	-	-	NULL
CENPI	2491	genome.wustl.edu	37	X	100356137	100356137	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006733.2	+1	reviewed	p.T26	0.001	138	0.7%	197	33%	12	0%	-	-	-	HMMPfam_Mis6
CENPI	2491	genome.wustl.edu	37	X	100402774	100402774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006733.2	+1	reviewed	p.A617T	1.000	204	0.5%	136	35.3%	8	0%	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
TAF7L	54457	genome.wustl.edu	37	X	100542468	100542468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024885.3	-1	reviewed	p.L108M	0.961	135	0%	190	37.4%	0	-	benign(0.113)	tolerated(0.12)	neutral(0.270)	HMMPfam_TAFII55_N
BTK	695	genome.wustl.edu	37	X	100615678	100615678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000061.2	-1	reviewed	p.K218N	0.987	212	0%	161	39.8%	2	0%	unknown(0)	tolerated(0.42)	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
HNRNPH2	3188	genome.wustl.edu	37	X	100667486	100667486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001032393.1	+1	reviewed	p.K170N	1.000	88	0%	116	20.7%	105	0%	possibly_damaging(0.659)	tolerated(0.4)	neutral(0.248)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HNRNPH2	3188	genome.wustl.edu	37	X	100667550	100667550	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001032393.1	+1	reviewed	p.R192*	1.000	91	0%	113	28.3%	93	0%	-	-	-	superfamily_RNA-binding domain RBD
ARMCX1	51309	genome.wustl.edu	37	X	100808590	100808590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016608.1	+1	reviewed	p.A226D	0.996	84	0%	105	29.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX6	54470	genome.wustl.edu	37	X	100871212	100871212	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009584.1	-1	validated	p.I133	0.451	126	0%	104	26.9%	19	0%	-	-	-	HMMPfam_DUF634
ARMCX3	51566	genome.wustl.edu	37	X	100880989	100880989	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016607.3	+1	reviewed	p.F340	1.000	38	0%	28	17.9%	14	78.5%	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100910807	100910807	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014782.5	-1	reviewed	p.E590*	1.000	74	0%	94	33%	1	0%	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100911098	100911098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014782.5	-1	reviewed	p.L493I	0.998	149	0%	162	34.6%	1	0%	probably_damaging(0.964)	tolerated(0.14)	deleterious(0.656)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100912562	100912562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014782.5	-1	reviewed	p.R5W	0.995	61	0%	86	33.7%	1	0%	unknown(0)	tolerated(0.07)	-	NULL
NXF5	55998	genome.wustl.edu	37	X	101096239	101096239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032946.2	-1	reviewed	p.D129N	1.000	506	0%	243	16%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_L domain-like
ZMAT1	84460	genome.wustl.edu	37	X	101138933	101138933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011657.2	-1	reviewed	p.R489I	0.472	265	0%	144	38.2%	4	0%	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101139114	101139114	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011657.2	-1	reviewed	p.E429*	0.624	302	0%	134	12.7%	4	0%	-	-	-	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101139129	101139129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011657.2	-1	reviewed	p.T424A	0.264	310	0%	146	33.6%	4	100%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	NULL
NXF2B	728343	genome.wustl.edu	37	X	101624640	101624640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099686.1	-1	provisional	p.R84Q	0.000	456	0%	269	12.3%	0	-	benign(0.027)	tolerated(0.41)	neutral(0.017)	NULL
ARMCX5	64860	genome.wustl.edu	37	X	101858402	101858402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022838.3	+1	validated	p.S445R	0.164	91	0%	25	32%	15	80%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DUF634,superfamily_ARM repeat
GPRASP1	9737	genome.wustl.edu	37	X	101909490	101909490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099410.1	+1	reviewed	p.N217D	0.002	79	0%	90	30%	2	0%	benign(0.002)	tolerated(0.41)	neutral(0.015)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101911869	101911869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099410.1	+1	reviewed	p.D1010N	0.997	166	0%	166	39.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101970695	101970695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004051.2	+1	reviewed	p.T300A	0.959	81	0%	137	37.2%	1	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101970939	101970939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004051.2	+1	reviewed	p.F381S	0.478	101	0%	131	13.7%	3	0%	benign(0.014)	tolerated(0.4)	neutral(0.017)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101971581	101971581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001004051.2	+1	reviewed	p.S595Y	0.663	180	0%	205	33.7%	1	0%	benign(0.123)	deleterious(0.02)	neutral(0.393)	HMMPfam_DUF634
BHLHB9	80823	genome.wustl.edu	37	X	102004349	102004349	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142524.1	+1	validated	p.I142	0.000	115	0%	161	22.4%	1	0%	-	-	-	NULL
NXF3	56000	genome.wustl.edu	37	X	102339380	102339380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022052.1	-1	reviewed	p.R81C	0.000	362	0%	324	34.3%	0	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	NULL
NXF3	56000	genome.wustl.edu	37	X	102339782	102339782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022052.1	-1	reviewed	p.A20T	0.002	217	0%	168	26.2%	0	-	possibly_damaging(0.895)	tolerated(0.07)	deleterious(0.672)	NULL
TCEAL5	340543	genome.wustl.edu	37	X	102529445	102529445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012979.2	-1	validated	p.R16I	0.126	355	0%	377	25.7%	1	0%	possibly_damaging(0.704)	deleterious(0.02)	deleterious(0.637)	HMMPfam_TFA
TCEAL7	56849	genome.wustl.edu	37	X	102586470	102586470	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152278.2	+1	provisional	p.E47*	0.960	106	0%	115	24.3%	0	-	-	-	-	HMMPfam_TFA
TCEAL4	79921	genome.wustl.edu	37	X	102841694	102841694	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006935.1	+1	reviewed	p.E31*	0.015	241	0%	363	28.7%	111	0%	-	-	-	HMMPfam_TFA
TCEAL4	79921	genome.wustl.edu	37	X	102842075	102842075	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006935.1	+1	reviewed	p.E158*	0.996	155	0%	200	27%	109	0%	-	-	-	HMMPfam_TFA
TCEAL4	79921	genome.wustl.edu	37	X	102842154	102842154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001006935.1	+1	reviewed	p.R184I	0.994	127	0%	172	27.3%	93	86%	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	HMMPfam_TFA
MCART6	401612	genome.wustl.edu	37	X	103349917	103349917	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001012755.3	-1	validated	p.P8	0.032	72	0%	69	31.9%	1	0%	-	-	-	NULL
ZCCHC18	644353	genome.wustl.edu	37	X	103358885	103358885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143978.1	+1	provisional	p.S28F	0.057	126	0%	197	30.5%	0	-	-	-	-	NULL
ESX1	80712	genome.wustl.edu	37	X	103498876	103498876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153448.3	-1	reviewed	p.E155D	0.051	39	0%	42	26.2%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
NRK	203447	genome.wustl.edu	37	X	105153104	105153104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198465.2	+1	validated	p.L491M	0.000	53	0%	24	20.8%	0	-	possibly_damaging(0.688)	tolerated(0.2)	neutral(0.295)	NULL
NRK	203447	genome.wustl.edu	37	X	105168781	105168781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198465.2	+1	validated	p.A1024T	0.000	143	0%	114	27.2%	0	-	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
NRK	203447	genome.wustl.edu	37	X	105179275	105179275	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_198465.2	+1	validated	p.E1205*	1.000	419	0%	161	30.4%	0	-	-	-	-	HMMSmart_SM00036
MUM1L1	139221	genome.wustl.edu	37	X	105449724	105449724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000337685	+1	known	p.R100K	0.451	83	0%	46	34.8%	1	0%	benign(0.029)	tolerated(0.62)	neutral(0.005)	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105450067	105450067	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000337685	+1	known	p.I214	0.000	125	0%	100	33%	0	-	-	-	-	NULL
MUM1L1	139221	genome.wustl.edu	37	X	105450888	105450888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000337685	+1	known	p.S488Y	0.945	82	0%	58	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF63748
LOC644504	644504	genome.wustl.edu	37	X	105570813	105570813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_001128075.2	+1	model	p.R64Q	1.000	75	0%	54	24.1%	0	-	-	-	-	HMMPfam_CHGN,superfamily_Nucleotide-diphospho-sugar transferases
CXorf57	55086	genome.wustl.edu	37	X	105855563	105855563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018015.5	+1	validated	p.D85N	0.013	60	0%	112	22.3%	1	100%	benign(0.003)	tolerated(0.72)	neutral(0.002)	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106083350	106083350	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017752.2	+1	validated	p.R476*	1.000	166	0%	101	28.7%	0	-	-	-	-	superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D8B	54885	genome.wustl.edu	37	X	106096754	106096754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017752.2	+1	validated	p.F709L	1.000	161	0%	90	36.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ypt/Rab-GAP domain of gyp1p
MORC4	79710	genome.wustl.edu	37	X	106198282	106198282	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024657.4	-1	reviewed	p.E516*	0.053	250	0%	113	23%	3	66.6%	-	-	-	NULL
MORC4	79710	genome.wustl.edu	37	X	106200226	106200226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024657.4	-1	reviewed	p.S465Y	1.000	154	0%	74	27%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-CW
RBM41	55285	genome.wustl.edu	37	X	106331767	106331767	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018301.3	-1	validated	p.E276*	1.000	168	0%	113	35.4%	1	100%	-	-	-	NULL
FRMPD3	84443	genome.wustl.edu	37	X	106844359	106844359	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_042978.6	+1	model	p.V1063	0.450	4	0.000	6	0.833	1	0%	-	-	-	NULL
MID2	11043	genome.wustl.edu	37	X	107160757	107160757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012216.3	+1	reviewed	p.R408Q	1.000	57	0%	30	33.3%	3	0%	benign(0.014)	tolerated(0.2)	neutral(0.050)	HMMSmart_SM00060,superfamily_Fibronectin type III
TEX13B	56156	genome.wustl.edu	37	X	107225271	107225271	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031273.2	-1	reviewed	p.T29	0.000	129	0%	86	29.1%	0	-	-	-	-	NULL
TEX13B	56156	genome.wustl.edu	37	X	107225309	107225309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031273.2	-1	reviewed	p.V17L	0.007	120	0%	72	15.3%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
VSIG1	340547	genome.wustl.edu	37	X	107320311	107320311	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182607.4	+1	reviewed	p.S288	0.000	79	0%	29	41.4%	1	0%	-	-	-	NULL
ATG4A	115201	genome.wustl.edu	37	X	107393387	107393387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_052936.2	+1	reviewed	p.E274K	1.000	90	0%	47	40.4%	28	0%	benign(0.37)	tolerated(0.13)	neutral(0.370)	HMMPfam_Peptidase_C54
COL4A6	1288	genome.wustl.edu	37	X	107402884	107402884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001847.2	-1	reviewed	p.K1541N	0.996	99	0%	87	29.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
COL4A6	1288	genome.wustl.edu	37	X	107431785	107431785	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001847.2	-1	reviewed	p.R518*	1.000	62	0%	14	28.6%	0	-	-	-	-	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107437766	107437766	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001847.2	-1	reviewed	p.E335*	1.000	336	0%	154	30.5%	0	-	-	-	-	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107447757	107447758	+	In_Frame_Ins	INS	-	-	TCT	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000394872	-1	known	p.218in_frame_insR	0.013:0.016	-	-	-	-	-	-	-	-	-	NULL
COL4A5	1287	genome.wustl.edu	37	X	107838787	107838787	+	Missense_Mutation	SNP	G	G	A	rs104886117		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_033380.1	+1	reviewed	p.G491E	1.000	111	0%	32	18.8%	1	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_Collagen
IRS4	8471	genome.wustl.edu	37	X	107977066	107977066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003604.2	-1	reviewed	p.L837M	0.801	135	0%	255	27.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IRS4	8471	genome.wustl.edu	37	X	107978764	107978764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003604.2	-1	reviewed	p.E271K	1.000	41	0%	86	29.1%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
IRS4	8471	genome.wustl.edu	37	X	107979044	107979044	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003604.2	-1	reviewed	p.F177	0.988	22	0%	66	34.8%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GUCY2F	2986	genome.wustl.edu	37	X	108708416	108708416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001522.2	-1	reviewed	p.E329D	0.034	167	0%	101	23.8%	0	-	benign(0.046)	tolerated(0.55)	neutral(0.009)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
NXT2	55916	genome.wustl.edu	37	X	108785765	108785765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018698.3	+1	provisional	p.L148I	1.000	88	0%	116	28.4%	9	88.8%	possibly_damaging(0.601)	tolerated(0.34)	neutral(0.231)	HMMPfam_NTF2,superfamily_SSF54427
ACSL4	2182	genome.wustl.edu	37	X	108924605	108924605	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_022977.2	-1	reviewed	e3-1	1.000	140	0%	104	31.7%	0	-	-	-	-	-
RGAG1	57529	genome.wustl.edu	37	X	109694752	109694752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020769.2	+1	validated	p.D303Y	0.397	176	0%	186	32.8%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109696359	109696359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020769.2	+1	validated	p.K838N	0.004	65	0%	72	31.9%	1	100%	possibly_damaging(0.836)	tolerated(0.06)	deleterious(0.642)	NULL
CHRDL1	91851	genome.wustl.edu	37	X	109924859	109924859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001143981.1	-1	reviewed	p.S336I	0.387	140	0%	66	10.6%	0	-	benign(0.017)	deleterious(0.01)	neutral(0.406)	NULL
PAK3	5063	genome.wustl.edu	37	X	110389769	110389769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128168.1	+1	reviewed	p.Q120H	1.000	67	0%	58	15.5%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMPfam_PBD
PAK3	5063	genome.wustl.edu	37	X	110439164	110439164	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001128168.1	+1	reviewed	p.K438T	1.000	146	0%	50	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CAPN6	827	genome.wustl.edu	37	X	110489922	110489922	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014289.3	-1	reviewed	p.S603	0.077	123	0%	69	31.9%	13	100%	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
TRPC5	7224	genome.wustl.edu	37	X	111020011	111020011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012471.2	-1	reviewed	p.P818S	1.000	107	0%	31	32.3%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111022277	111022277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012471.2	-1	reviewed	p.R723I	1.000	338	0%	92	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPC5	7224	genome.wustl.edu	37	X	111025349	111025349	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012471.2	-1	reviewed	p.E638	1.000	103	0%	53	20.8%	0	-	-	-	-	NULL
TRPC5	7224	genome.wustl.edu	37	X	111090401	111090401	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_012471.2	-1	reviewed	p.I547	0.761	135	0%	103	36.9%	0	-	-	-	-	HMMPfam_Ion_trans
LHFPL1	340596	genome.wustl.edu	37	X	111903898	111903898	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178175.3	-1	reviewed	p.E146D	0.990	173	0%	91	25.3%	0	-	benign(0.029)	deleterious(0.02)	neutral(0.385)	HMMPfam_L_HGMIC_fpl
HTR2C	3358	genome.wustl.edu	37	X	114082611	114082611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000868.2	+1	reviewed	p.S132Y	0.992	305	0%	253	34%	0	-	benign(0.01)	tolerated(0.08)	neutral(0.300)	HMMPfam_7tm_1,superfamily_SSF81321
HTR2C	3358	genome.wustl.edu	37	X	114141284	114141284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000868.2	+1	reviewed	p.T228M	0.997	89	0%	31	41.9%	0	-	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	HMMPfam_7tm_1,superfamily_SSF81321
IL13RA2	3598	genome.wustl.edu	37	X	114249052	114249052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000640.2	-1	reviewed	p.W111L	0.000	130	0%	38	50%	0	-	benign(0.031)	tolerated(0.44)	neutral(0.014)	superfamily_FN_III-like
LRCH2	57631	genome.wustl.edu	37	X	114400025	114400025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020871.3	-1	validated	p.G433E	1.000	269	0%	129	25.6%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114400180	114400180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020871.3	-1	validated	p.D413Y	1.000	263	0%	133	26.3%	0	-	possibly_damaging(0.908)	deleterious(0.02)	deleterious(0.744)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114404895	114404895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020871.3	-1	validated	p.S322N	0.998	223	0%	101	32.7%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	superfamily_SSF52058
RBMXL3	139804	genome.wustl.edu	37	X	114426383	114426383	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145346.1	+1	validated	p.G793	0.994	50	0%	63	27%	0	-	-	-	-	NULL
LUZP4	51213	genome.wustl.edu	37	X	114540854	114540854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016383.3	+1	validated	p.P143T	0.001	82	0%	125	28%	0	-	benign(0.007)	tolerated(0.28)	neutral(0.032)	NULL
AGTR2	186	genome.wustl.edu	37	X	115304271	115304271	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000686.4	+1	reviewed	p.K246	0.992	200	0%	55	30.9%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SLC6A14	11254	genome.wustl.edu	37	X	115588928	115588928	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_007231.3	+1	reviewed	p.G590*	1.000	222	0%	130	26.2%	0	-	-	-	-	HMMPfam_SNF
WDR44	54521	genome.wustl.edu	37	X	117577650	117577650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_019045.4	+1	reviewed	p.A838S	1.000	176	0%	116	19%	14	0%	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	superfamily_WD40 repeat-like
DOCK11	139818	genome.wustl.edu	37	X	117743280	117743280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144658.3	+1	validated	p.A973T	1.000	78	0%	39	25.6%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DOCK11	139818	genome.wustl.edu	37	X	117817097	117817097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_144658.3	+1	validated	p.E2007*	1.000	128	0%	67	35.8%	7	0%	-	-	-	HMMPfam_Ded_cyto
IL13RA1	3597	genome.wustl.edu	37	X	117895177	117895177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001560.2	+1	reviewed	p.Q251H	0.447	213	0%	151	21.2%	31	0%	benign(0.393)	tolerated(0.17)	neutral(0.185)	superfamily_Fibronectin type III
IL13RA1	3597	genome.wustl.edu	37	X	117925802	117925802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001560.2	+1	reviewed	p.K423N	1.000	184	0%	188	36.2%	28	0%	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
LONRF3	79836	genome.wustl.edu	37	X	118116845	118116845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001031855.1	+1	reviewed	p.E333G	1.000	158	0%	199	11.6%	0	-	possibly_damaging(0.895)	tolerated(0.18)	neutral(0.409)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
LONRF3	79836	genome.wustl.edu	37	X	118124488	118124488	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000439603	+1	known	p.R226*	0.995	212	0%	153	33.3%	1	0%	-	-	-	superfamily_RING/U-box
ENSG00000248857	0	genome.wustl.edu	37	X	118220966	118220966	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000440399	-1	known	p.E816*	0.000	135	0%	76	31.6%	0	-	probably_damaging(0.99)	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118221639	118221639	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020721.1	-1	validated	p.K1185T	0.001	112	0%	58	20.7%	0	-	probably_damaging(0.999)	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118239012	118239012	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_020721.1	-1	validated	p.E337	0.000	205	0%	73	34.2%	0	-	-	-	-	NULL
NKRF	55922	genome.wustl.edu	37	X	118723549	118723549	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017544.3	-1	reviewed	p.Y613	0.950	212	0%	166	15.1%	18	0%	-	-	-	HMMPfam_R3H,HMMSmart_SM00393,superfamily_R3H domain
NKRF	55922	genome.wustl.edu	37	X	118724045	118724045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017544.3	-1	reviewed	p.S448Y	1.000	133	0%	96	10.4%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_dsRNA-binding domain-like
NKRF	55922	genome.wustl.edu	37	X	118724221	118724221	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017544.3	-1	reviewed	p.E389D	1.000	117	0%	84	27.4%	11	0%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
NKRF	55922	genome.wustl.edu	37	X	118724852	118724852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017544.3	-1	reviewed	p.A179V	0.942	134	0%	73	34.2%	6	0%	possibly_damaging(0.952)	deleterious(0.02)	deleterious(0.778)	NULL
NKRF	55922	genome.wustl.edu	37	X	118726448	118726448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017544.3	-1	reviewed	p.L5I	0.997	196	0%	140	35%	5	100%	possibly_damaging(0.858)	tolerated(0.3)	neutral(0.360)	NULL
RNF113A	7737	genome.wustl.edu	37	X	119005560	119005560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006978.2	-1	reviewed	p.S6F	0.079	36	0%	54	22.2%	18	5.5%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
AKAP14	158798	genome.wustl.edu	37	X	119037538	119037538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178813.5	+1	reviewed	p.E84K	0.000	119	0%	108	24.1%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
NKAP	79576	genome.wustl.edu	37	X	119070318	119070318	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024528.3	-1	reviewed	p.K205	0.999	387	0%	322	28%	7	0%	-	-	-	NULL
C1GALT1C1	29071	genome.wustl.edu	37	X	119760844	119760844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011551.2	-1	reviewed	p.R60C	1.000	181	0%	300	33%	26	0%	possibly_damaging(0.862)	tolerated(0.2)	neutral(0.382)	NULL
CT47B1	643311	genome.wustl.edu	37	X	120007855	120007855	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001145718.1	-1	validated	p.P265	0.001	440	0%	670	27.9%	0	-	-	-	-	NULL
MRRFP1	286423	genome.wustl.edu	37	X	122251291	122251291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000435941	-1	known	p.L107I	1.000	148	0%	68	26.5%	0	-	benign(0.155)	tolerated(0.06)	neutral(0.336)	HMMPfam_RRF,superfamily_Ribosome_recyc_fac
MRRFP1	286423	genome.wustl.edu	37	X	122251585	122251585	+	Missense_Mutation	SNP	G	G	A	rs180694072	by1000genomes	TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000435941	-1	known	p.R9C	0.007	105	0%	42	26.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
THOC2	57187	genome.wustl.edu	37	X	122778702	122778702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001081550.1	-1	validated	p.S496F	1.000	139	0%	82	32.9%	7	0%	possibly_damaging(0.641)	deleterious(0.04)	deleterious(0.574)	NULL
THOC2	57187	genome.wustl.edu	37	X	122837349	122837349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001081550.1	-1	validated	p.R77C	1.000	77	0%	143	30.1%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
XIAP	331	genome.wustl.edu	37	X	123020016	123020016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001167.2	+1	reviewed	p.K168N	0.025	167	0%	113	44.2%	4	0%	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,superfamily_SSF57924
XIAP	331	genome.wustl.edu	37	X	123034375	123034375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001167.2	+1	reviewed	p.E378K	1.000	95	0%	69	20.3%	4	0%	benign(0.07)	tolerated(0.57)	neutral(0.011)	superfamily_SSF57924
XIAP	331	genome.wustl.edu	37	X	123034442	123034442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001167.2	+1	reviewed	p.S400Y	0.995	113	0%	105	25.7%	3	0%	possibly_damaging(0.492)	deleterious(0)	deleterious(0.609)	superfamily_SSF57924
STAG2	10735	genome.wustl.edu	37	X	123224466	123224466	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042749.1	+1	validated	p.E1107*	1.000	272	0%	124	29.8%	134	0%	-	-	-	superfamily_ARM-type_fold
LOC100129231	100129231	genome.wustl.edu	37	X	123338554	123338554	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XR_078598.1	-1	model	NULL	1.000	61	0%	29	17.2%	0	-	-	-	-	-
SH2D1A	4068	genome.wustl.edu	37	X	123504136	123504136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002351.4	+1	reviewed	p.K104N	0.990	161	0%	51	29.4%	2	0%	benign(0.002)	tolerated(0.13)	neutral(0.253)	superfamily_SH2 domain
ODZ1	10178	genome.wustl.edu	37	X	123514839	123514839	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014253.3	-1	reviewed	p.F2575	1.000	66	0%	26	26.9%	6	0%	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123516586	123516586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014253.3	-1	reviewed	p.E2451D	1.000	110	0%	44	38.6%	1	0%	benign(0)	tolerated(1)	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123526105	123526105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014253.3	-1	reviewed	p.L1822I	1.000	188	0%	96	12.5%	1	0%	benign(0.001)	tolerated(0.7)	neutral(0.002)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123615688	123615688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014253.3	-1	reviewed	p.K1274N	1.000	111	0%	40	37.5%	4	0%	benign(0.218)	tolerated(0.42)	neutral(0.035)	superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	123785874	123785874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014253.3	-1	reviewed	p.S490L	0.782	208	0%	90	25.6%	1	100%	benign(0.089)	tolerated(0.56)	neutral(0.013)	NULL
DCAF12L1	139170	genome.wustl.edu	37	X	125686027	125686027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_178470.4	-1	reviewed	p.D189N	0.908	54	0%	107	30.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CXorf64	100130613	genome.wustl.edu	37	X	125955209	125955209	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001122716.1	+1	validated	p.P196	0.000	101	0%	44	29.5%	0	-	-	-	-	NULL
ACTRT1	139741	genome.wustl.edu	37	X	127185622	127185622	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_138289.3	-1	reviewed	p.I188	0.997	127	0%	35	17.1%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
SMARCA1	6594	genome.wustl.edu	37	X	128627040	128627040	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003069.3	-1	reviewed	p.E547*	1.000	52	0%	31	45.2%	14	0%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCA1	6594	genome.wustl.edu	37	X	128638769	128638769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003069.3	-1	reviewed	p.S370Y	1.000	257	0%	177	31.1%	11	0%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMPfam_SNF2_N,HMMSmart_SM00487
SMARCA1	6594	genome.wustl.edu	37	X	128649932	128649932	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003069.3	-1	reviewed	p.E156	1.000	207	0%	216	35.2%	15	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
OCRL	4952	genome.wustl.edu	37	X	128703278	128703278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000276.3	+1	reviewed	p.L502I	1.000	173	0%	249	34.5%	8	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
OCRL	4952	genome.wustl.edu	37	X	128724242	128724242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000276.3	+1	reviewed	p.D901N	1.000	266	0%	120	34.2%	7	0%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	NULL
XPNPEP2	7512	genome.wustl.edu	37	X	128886210	128886210	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003399.5	+1	reviewed	p.I302	0.000	117	0%	117	31.6%	1	0%	-	-	-	NULL
SASH3	54440	genome.wustl.edu	37	X	128927718	128927718	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018990.3	+1	reviewed	p.C351	1.000	43	0%	44	29.5%	28	0%	-	-	-	NULL
UTP14A	10813	genome.wustl.edu	37	X	129040194	129040194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006649.3	+1	reviewed	p.A3V	0.000	116	0%	79	39.2%	6	0%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
UTP14A	10813	genome.wustl.edu	37	X	129054481	129054481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006649.3	+1	reviewed	p.E267D	0.003	164	0%	143	35.7%	10	0%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_Utp14
UTP14A	10813	genome.wustl.edu	37	X	129055253	129055253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_006649.3	+1	reviewed	p.E346D	0.001	87	0%	77	29.9%	16	0%	benign(0.019)	tolerated(0.38)	neutral(0.019)	HMMPfam_Utp14
BCORL1	63035	genome.wustl.edu	37	X	129148815	129148815	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000441294	+1	known	p.L125I	1.000	72	0%	64	17.2%	2	0%	-	-	-	NULL
ELF4	2000	genome.wustl.edu	37	X	129206263	129206263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127197.1	-1	reviewed	p.S157Y	0.006	316	0%	362	30.9%	4	0%	possibly_damaging(0.751)	tolerated(0.21)	neutral(0.320)	NULL
ELF4	2000	genome.wustl.edu	37	X	129215263	129215263	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001127197.1	-1	reviewed	p.F14	1.000	221	0%	275	25.8%	2	0%	-	-	-	NULL
ENOX2	10495	genome.wustl.edu	37	X	129768984	129768984	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182314.1	-1	reviewed	p.K494Q	1.000	314	0%	184	26.1%	5	0%	benign(0.045)	tolerated(0.66)	neutral(0.005)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130408141	130408141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001555.4	-1	reviewed	p.R1264Q	1.000	205	0%	146	32.9%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130408696	130408696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001555.4	-1	reviewed	p.D1210Y	0.995	184	0%	116	29.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IGSF1	3547	genome.wustl.edu	37	X	130412665	130412665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001555.4	-1	reviewed	p.P604Q	1.000	35	0%	22	45.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Immunoglobulin
MST4	51765	genome.wustl.edu	37	X	131205163	131205163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016542.3	+1	reviewed	p.L284M	1.000	133	0%	37	27%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
HS6ST2	90161	genome.wustl.edu	37	X	131762335	131762335	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077188.1	-1	reviewed	p.P618	0.815	362	0%	165	32.7%	3	0%	-	-	-	NULL
HS6ST2	90161	genome.wustl.edu	37	X	131762796	131762796	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077188.1	-1	reviewed	p.L465	1.000	99	0%	50	24%	1	0%	-	-	-	HMMPfam_HS6ST
HS6ST2	90161	genome.wustl.edu	37	X	132090959	132090959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001077188.1	-1	reviewed	p.T275I	1.000	42	0%	55	30.9%	3	66.6%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_HS6ST
USP26	83844	genome.wustl.edu	37	X	132159805	132159805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031907.1	-1	reviewed	p.R815I	0.000	271	0%	154	24%	0	-	benign(0.179)	deleterious(0.01)	neutral(0.422)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP26	83844	genome.wustl.edu	37	X	132160042	132160042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031907.1	-1	reviewed	p.S736Y	0.004	92	0%	43	34.9%	0	-	possibly_damaging(0.46)	deleterious(0.02)	deleterious(0.534)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP26	83844	genome.wustl.edu	37	X	132161573	132161573	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031907.1	-1	reviewed	p.E226*	0.000	153	0%	61	31.1%	0	-	-	-	-	NULL
USP26	83844	genome.wustl.edu	37	X	132161704	132161704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_031907.1	-1	reviewed	p.R182I	0.000	175	0%	87	27.6%	0	-	benign(0.016)	deleterious(0.01)	neutral(0.406)	NULL
GPC4	2239	genome.wustl.edu	37	X	132440115	132440115	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001448.2	-1	reviewed	p.I315	1.000	131	0%	69	40.6%	36	0%	-	-	-	HMMPfam_Glypican
CCDC160	347475	genome.wustl.edu	37	X	133378922	133378922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101357.1	+1	provisional	p.S31Y	0.004	59	0%	64	32.8%	7	0%	possibly_damaging(0.922)	tolerated(0.1)	deleterious(0.658)	NULL
CCDC160	347475	genome.wustl.edu	37	X	133379392	133379392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001101357.1	+1	provisional	p.N188H	0.000	65	0%	90	26.7%	6	0%	benign(0.282)	tolerated(0.4)	neutral(0.102)	NULL
HPRT1	3251	genome.wustl.edu	37	X	133609336	133609336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000194.2	+1	reviewed	p.R87I	1.000	187	0%	108	37%	80	90%	benign(0.403)	deleterious(0.02)	deleterious(0.512)	HMMPfam_Pribosyltran,superfamily_PRTase-like
MIR450A1	554214	genome.wustl.edu	37	X	133674414	133674414	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000362262	-1	known	NULL	0.972	295	0%	422	31%	0	-	-	-	-	-
FAM122B	159090	genome.wustl.edu	37	X	133923141	133923141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_145284.5	-1	validated	p.Q84K	1.000	153	0%	145	11.7%	37	0%	benign(0.069)	tolerated(0.23)	neutral(0.046)	NULL
LOC728470	728470	genome.wustl.edu	37	X	134314303	134314303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343844.1	-1	model	p.S202Y	0.995	95	0%	49	46.9%	0	-	-	-	-	NULL
LOC728470	728470	genome.wustl.edu	37	X	134314320	134314320	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	XM_002343844.1	-1	model	p.I196	0.908	80	0%	37	21.6%	0	-	-	-	-	NULL
ZNF449	203523	genome.wustl.edu	37	X	134481296	134481296	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152695.5	+1	reviewed	p.E85*	0.871	88	0%	121	28.9%	1	0%	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
ZNF449	203523	genome.wustl.edu	37	X	134494415	134494415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152695.5	+1	reviewed	p.R324Q	0.005	59	0%	33	30.3%	1	0%	benign(0.297)	tolerated(0.38)	neutral(0.110)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF449	203523	genome.wustl.edu	37	X	134494808	134494808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152695.5	+1	reviewed	p.R455K	1.000	119	0%	75	29.3%	3	0%	possibly_damaging(0.882)	tolerated(0.16)	neutral(0.404)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF449	203523	genome.wustl.edu	37	X	134494892	134494892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_152695.5	+1	reviewed	p.R483I	1.000	101	0%	56	25%	5	0%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DDX26B	203522	genome.wustl.edu	37	X	134679393	134679393	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_182540.4	+1	validated	p.N79H	1.000	184	0%	81	32.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_vWA-like
SAGE1	55511	genome.wustl.edu	37	X	134986703	134986703	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018666.2	+1	reviewed	p.V96	0.022	118	0%	51	37.3%	0	-	-	-	-	NULL
SLC9A6	10479	genome.wustl.edu	37	X	135126644	135126644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001042537.1	+1	reviewed	p.L623I	1.000	82	0%	58	29.3%	8	0%	possibly_damaging(0.437)	tolerated(0.22)	neutral(0.184)	NULL
FHL1	2273	genome.wustl.edu	37	X	135288732	135288732	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001449.4	+1	reviewed	p.I47	0.640	62	0%	30	26.7%	2	0%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
FHL1	2273	genome.wustl.edu	37	X	135290063	135290063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001449.4	+1	reviewed	p.F148L	1.000	65	0%	65	32.3%	3	0%	benign(0.085)	tolerated(0.65)	neutral(0.009)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MAP7D3	79649	genome.wustl.edu	37	X	135314247	135314247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024597.3	-1	reviewed	p.S290Y	0.000	152	0%	73	23.3%	1	0%	benign(0.005)	deleterious(0.04)	neutral(0.349)	NULL
GPR112	139378	genome.wustl.edu	37	X	135426977	135426977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.S371Y	0.066	122	0%	74	35.1%	0	-	benign(0.105)	deleterious(0)	neutral(0.453)	NULL
GPR112	139378	genome.wustl.edu	37	X	135427830	135427830	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.I655M	0.125	126	0%	100	30%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
GPR112	139378	genome.wustl.edu	37	X	135429317	135429317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.D1151G	0.008	129	0%	105	22.9%	0	-	benign(0.376)	deleterious(0.01)	deleterious(0.526)	NULL
GPR112	139378	genome.wustl.edu	37	X	135430910	135430910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.S1682Y	0.021	83	0%	59	22%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
GPR112	139378	genome.wustl.edu	37	X	135445657	135445657	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.G2433	0.999	154	0%	87	27.6%	0	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135453563	135453563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.K2491N	0.991	114	0%	43	25.6%	0	-	probably_damaging(0.962)	deleterious(0.02)	deleterious(0.788)	NULL
GPR112	139378	genome.wustl.edu	37	X	135482212	135482212	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.L2838	1.000	361	0%	305	33.1%	0	-	-	-	-	HMMPfam_7tm_2
GPR112	139378	genome.wustl.edu	37	X	135488104	135488104	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.L2970V	1.000	243	0%	244	26.2%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_7tm_2
GPR112	139378	genome.wustl.edu	37	X	135496377	135496377	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_153834.3	+1	reviewed	p.I3032	0.000	111	0%	85	36.5%	0	-	-	-	-	NULL
BRS3	680	genome.wustl.edu	37	X	135570694	135570694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001727.1	+1	validated	p.L141I	1.000	143	0%	111	28.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
BRS3	680	genome.wustl.edu	37	X	135574302	135574302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001727.1	+1	validated	p.S323Y	1.000	225	0%	267	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
HTATSF1	27336	genome.wustl.edu	37	X	135582330	135582330	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014500.4	+1	reviewed	p.V127	0.997	132	0%	182	31.3%	38	0%	-	-	-	superfamily_SSF54928
HTATSF1	27336	genome.wustl.edu	37	X	135584940	135584940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014500.4	+1	reviewed	p.E192K	1.000	119	0%	115	30.4%	22	86.3%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
ARHGEF6	9459	genome.wustl.edu	37	X	135750206	135750206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004840.2	-1	reviewed	p.K771N	0.995	259	0%	127	33.1%	5	0%	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135751652	135751652	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004840.2	-1	reviewed	p.E727*	1.000	218	0.5%	116	29.3%	8	0%	-	-	-	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135761711	135761711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004840.2	-1	reviewed	p.A605T	1.000	204	0%	115	33.9%	0	-	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135770138	135770138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004840.2	-1	reviewed	p.D400N	1.000	193	0%	110	30%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ARHGEF6	9459	genome.wustl.edu	37	X	135829752	135829752	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004840.2	-1	reviewed	e3-1	1.000	90	0%	83	36.1%	0	-	-	-	-	-
RBMX	27316	genome.wustl.edu	37	X	135961579	135961579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002139.3	-1	reviewed	p.E3G	1.000	180	0%	221	25.8%	43	0%	possibly_damaging(0.848)	deleterious(0)	deleterious(0.770)	NULL
ZIC3	7547	genome.wustl.edu	37	X	136649509	136649509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003413.3	+1	reviewed	p.S220I	0.999	12	0%	19	36.8%	0	-	benign(0.013)	deleterious(0.01)	neutral(0.406)	NULL
MCF2	4168	genome.wustl.edu	37	X	138672031	138672031	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099855.1	-1	reviewed	p.I838S	1.000	180	0%	52	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
MCF2	4168	genome.wustl.edu	37	X	138680647	138680647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099855.1	-1	reviewed	p.R676I	0.919	217	0%	72	18.1%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
MCF2	4168	genome.wustl.edu	37	X	138697208	138697208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001099855.1	-1	reviewed	p.Q459K	1.000	159	0%	44	25%	0	-	benign(0.059)	tolerated(1)	neutral(0.004)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138864854	138864854	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173694.4	-1	validated	p.E605*	0.658	156	0%	118	31.4%	3	33.3%	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP11C	286410	genome.wustl.edu	37	X	138867415	138867415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173694.4	-1	validated	p.R549C	1.000	158	0%	137	29.9%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP11C	286410	genome.wustl.edu	37	X	138882270	138882270	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173694.4	-1	validated	e8-1	1.000	121	0%	72	29.2%	0	-	-	-	-	-
ATP11C	286410	genome.wustl.edu	37	X	138886710	138886710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173694.4	-1	validated	p.L162I	1.000	142	0%	69	43.5%	3	0%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A
ATP11C	286410	genome.wustl.edu	37	X	138901560	138901560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173694.4	-1	validated	p.K61N	1.000	68	0%	41	34.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SOX3	6658	genome.wustl.edu	37	X	139586645	139586645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005634.2	-1	reviewed	p.R194Q	0.997	42	0%	78	24.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
SPANXD	64648	genome.wustl.edu	37	X	140785702	140785702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032417.2	-1	reviewed	p.A72T	0.008	321	0%	248	33.1%	0	-	benign(0.221)	deleterious(0.01)	neutral(0.428)	HMMPfam_SPAN-X
MAGEC1	9947	genome.wustl.edu	37	X	140995128	140995128	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005462.4	+1	reviewed	p.E646	0.993	124	0%	66	21.2%	0	-	-	-	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140995851	140995851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005462.4	+1	reviewed	p.E887D	0.006	132	0%	85	25.9%	0	-	unknown(0)	tolerated(0.4)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140996064	140996064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005462.4	+1	reviewed	p.E958D	0.002	121	0%	64	26.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MAGE
MAGEC2	51438	genome.wustl.edu	37	X	141291529	141291529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_016249.3	-1	reviewed	p.S82I	0.017	158	0%	135	29.6%	0	-	benign(0.278)	deleterious(0.04)	neutral(0.379)	NULL
SPANXN3	139067	genome.wustl.edu	37	X	142596880	142596880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001009609.2	-1	validated	p.N64H	0.000	362	0%	176	27.8%	0	-	benign(0.005)	tolerated(0.53)	neutral(0.007)	HMMPfam_SPAN-X
SLITRK4	139065	genome.wustl.edu	37	X	142717345	142717345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173078.3	-1	reviewed	p.D527A	1.000	175	0%	231	38.5%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
SLITRK4	139065	genome.wustl.edu	37	X	142718894	142718894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_173078.3	-1	reviewed	p.A11S	1.000	54	0%	78	28.2%	8	0%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144904047	144904047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144003.2	+1	reviewed	p.C35Y	1.000	135	0%	201	13.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00013,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144904622	144904622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144003.2	+1	reviewed	p.L227I	1.000	129	0%	184	18.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00082,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144904645	144904645	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144003.2	+1	reviewed	p.I234	0.891	114	0%	161	12.4%	0	-	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144904852	144904852	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144003.2	+1	reviewed	p.R303	1.000	62	0%	80	30%	0	-	-	-	-	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144905024	144905024	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144003.2	+1	reviewed	p.E361*	1.000	51	0%	85	38.8%	0	-	-	-	-	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like
SLITRK2	84631	genome.wustl.edu	37	X	144905830	144905830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001144003.2	+1	reviewed	p.F629L	0.946	43	0%	74	31.1%	0	-	possibly_damaging(0.481)	tolerated(0.28)	neutral(0.191)	NULL
CXorf1	9142	genome.wustl.edu	37	X	144909377	144909377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004709.2	+1	validated	p.F61C	0.417	237	0%	233	28.8%	0	-	probably_damaging(0.954)	-	-	NULL
MIR513A1	574509	genome.wustl.edu	37	X	146295033	146295033	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000385138	-1	known	NULL	0.000	234	0%	132	31.1%	0	-	-	-	-	-
MIR513A2	574510	genome.wustl.edu	37	X	146307346	146307346	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000385249	-1	known	NULL	0.004	176	0%	104	26%	0	-	-	-	-	-
MIR510	574515	genome.wustl.edu	37	X	146353877	146353877	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000384909	-1	known	NULL	0.090	116	0%	45	28.9%	0	-	-	-	-	-
FMR1	2332	genome.wustl.edu	37	X	147014005	147014005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002024.5	+1	reviewed	p.G231D	1.000	260	0%	98	34.7%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
AFF2	2334	genome.wustl.edu	37	X	148037245	148037245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002025.3	+1	reviewed	p.S557Y	0.363	105	0%	76	32.9%	1	100%	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148037296	148037296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_002025.3	+1	reviewed	p.T574M	0.000	105	0%	69	30.4%	0	-	possibly_damaging(0.605)	tolerated(0.09)	deleterious(0.506)	HMMPfam_AF-4
IDS	3423	genome.wustl.edu	37	X	148564405	148564405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000202.5	-1	reviewed	p.E509K	0.046	93	0%	65	33.8%	22	0%	benign(0.005)	tolerated(0.35)	neutral(0.021)	superfamily_Alkaline phosphatase-like
MAMLD1	10046	genome.wustl.edu	37	X	149638407	149638407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005491.3	+1	reviewed	p.D188Y	0.993	31	0%	30	30%	3	0%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
MTM1	4534	genome.wustl.edu	37	X	149761103	149761103	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000252.2	+1	reviewed	p.Y9*	1.000	269	0%	133	30.8%	1	0%	-	-	-	NULL
MTMR1	8776	genome.wustl.edu	37	X	149867756	149867756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003828.2	+1	reviewed	p.V79M	1.000	210	0%	225	36.9%	5	0%	possibly_damaging(0.86)	deleterious(0.04)	deleterious(0.681)	NULL
MTMR1	8776	genome.wustl.edu	37	X	149905191	149905191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003828.2	+1	reviewed	p.S394L	0.960	121	0.8%	85	37.6%	27	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MTMR1	8776	genome.wustl.edu	37	X	149924161	149924161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003828.2	+1	reviewed	p.D553N	1.000	248	0%	207	30.9%	11	0%	benign(0)	tolerated(1)	-	superfamily_(Phosphotyrosine protein) phosphatases II
FATE1	89885	genome.wustl.edu	37	X	150885865	150885865	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000370348	+1	known	e2+1	0.000	91	0%	87	28.7%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	-
CNGA2	1260	genome.wustl.edu	37	X	150908062	150908062	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005140.1	+1	reviewed	p.E78*	1.000	125	0%	84	33.3%	0	-	-	-	-	NULL
CNGA2	1260	genome.wustl.edu	37	X	150908164	150908164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005140.1	+1	reviewed	p.D112N	0.987	109	0%	80	31.2%	0	-	benign(0.001)	tolerated(0.79)	neutral(0.001)	NULL
CNGA2	1260	genome.wustl.edu	37	X	150911103	150911103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005140.1	+1	reviewed	p.R193Q	0.257	123	0%	63	25.4%	0	-	probably_damaging(0.997)	tolerated(0.4)	deleterious(0.482)	HMMPfam_Ion_trans,superfamily_SSF81324
CNGA2	1260	genome.wustl.edu	37	X	150912845	150912845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005140.1	+1	reviewed	p.G624R	0.191	77	0%	56	41.1%	0	-	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	NULL
MAGEA10	4109	genome.wustl.edu	37	X	151303645	151303645	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001011543.1	-1	reviewed	p.Q150*	0.007	136	0%	163	28.2%	0	-	-	-	-	HMMPfam_MAGE
GABRA3	2556	genome.wustl.edu	37	X	151336979	151336979	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000808.3	-1	reviewed	p.G400	0.899	361	0%	271	33.9%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA3	2556	genome.wustl.edu	37	X	151366179	151366179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000808.3	-1	reviewed	p.C286Y	1.000	185	0%	107	35.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRA3	2556	genome.wustl.edu	37	X	151376561	151376561	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000808.3	-1	reviewed	p.S230	0.985	208	0%	171	28.1%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
MIR105-2	406898	genome.wustl.edu	37	X	151562941	151562941	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000385083	-1	known	NULL	1.000	70	1.4%	44	15.9%	0	-	-	-	-	-
GABRQ	55879	genome.wustl.edu	37	X	151821552	151821552	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018558.2	+1	reviewed	p.G569	0.000	66	0%	64	34.4%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
MAGEA3	4102	genome.wustl.edu	37	X	151935665	151935665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005362.3	-1	reviewed	p.E168*	0.024	175	0%	171	35.1%	0	-	-	-	-	HMMPfam_MAGE
CETN2	1069	genome.wustl.edu	37	X	151998193	151998193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_004344.1	-1	reviewed	p.L39I	1.000	237	0.4%	428	33.2%	32	0%	benign(0.2)	deleterious(0.01)	neutral(0.425)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
NSDHL	50814	genome.wustl.edu	37	X	152037637	152037637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001129765.1	+1	reviewed	p.R367C	0.988	42	0%	44	38.6%	54	0%	benign(0.019)	tolerated(0.05)	neutral(0.346)	superfamily_NAD(P)-bd
PNMA5	114824	genome.wustl.edu	37	X	152159518	152159518	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001103150.1	-1	validated	p.L209	0.050	54	0%	90	32.2%	0	-	-	-	-	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153032418	153032418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005393.2	+1	reviewed	p.R46C	0.920	80	0%	163	27.6%	1	0%	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	superfamily_Sema
PLXNB3	5365	genome.wustl.edu	37	X	153035631	153035631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005393.2	+1	reviewed	p.H572N	0.001	80	0%	151	29.8%	0	-	benign(0.429)	tolerated(0.43)	neutral(0.153)	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153040261	153040261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005393.2	+1	reviewed	p.D1311Y	1.000	31	0%	52	17.3%	1	0%	unknown(0)	deleterious(0.02)	-	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153043006	153043006	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000448847	+1	known	p.T12M	0.701	90	0%	130	35.4%	1	0%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PDZD4	57595	genome.wustl.edu	37	X	153069400	153069400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032512.2	-1	provisional	p.G573D	0.009	9	0.000	10	0.400	2	50%	benign(0.058)	tolerated(0.25)	neutral(0.041)	NULL
PDZD4	57595	genome.wustl.edu	37	X	153070250	153070250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_032512.2	-1	provisional	p.E290K	1.000	30	0%	63	34.9%	0	-	possibly_damaging(0.892)	deleterious(0.01)	deleterious(0.757)	NULL
L1CAM	3897	genome.wustl.edu	37	X	153128961	153128961	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000425.3	-1	reviewed	p.P1167	0.039	62	0%	65	27.7%	1	0%	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153131250	153131250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000425.3	-1	reviewed	p.E819G	0.087	62	0%	108	35.2%	0	-	possibly_damaging(0.62)	deleterious(0.01)	deleterious(0.622)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
L1CAM	3897	genome.wustl.edu	37	X	153138106	153138106	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000425.3	-1	reviewed	p.V46	0.948	45	0%	72	27.8%	2	0%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HCFC1	3054	genome.wustl.edu	37	X	153216301	153216301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000444191	-1	known	p.W464*	1.000	41	0%	81	40.7%	54	25.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III
HCFC1	3054	genome.wustl.edu	37	X	153217604	153217604	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005334.2	-1	reviewed	p.G1650S	0.955	9	0.000	17	0.471	69	81.1%	probably_damaging(0.972)	tolerated(0.32)	neutral(0.438)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153229589	153229589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_005334.2	-1	reviewed	p.K163N	1.000	154	0%	212	36.3%	25	56%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	superfamily_Galactose oxidase central domain
TMEM187	8269	genome.wustl.edu	37	X	153247597	153247597	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_003492.2	+1	reviewed	p.F28	0.001	38	2.6%	68	27.9%	16	12.5%	-	-	-	NULL
FLNA	2316	genome.wustl.edu	37	X	153577251	153577251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001110556.1	-1	reviewed	p.I2637N	1.000	62	0%	97	30.9%	1293	0.1%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
EMD	2010	genome.wustl.edu	37	X	153608072	153608072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000117.2	+1	reviewed	p.E35D	0.996	20	0%	15	46.7%	73	91.7%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_LEM,HMMSmart_SM00540,superfamily_LEM domain
PLXNA3	55558	genome.wustl.edu	37	X	153690558	153690558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_017514.3	+1	reviewed	p.D409N	1.000	23	0%	51	25.5%	12	58.3%	benign(0.402)	tolerated(0.36)	neutral(0.149)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
UBL4A	8266	genome.wustl.edu	37	X	153713947	153713947	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_014235.3	-1	provisional	p.I135	0.987	74	0%	142	34.5%	41	0%	-	-	-	NULL
SLC10A3	8273	genome.wustl.edu	37	X	153716389	153716389	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001142392.1	-1	reviewed	p.G297	0.041	52	0%	84	36.9%	45	73.3%	-	-	-	HMMPfam_SBF
SNORA36A	677817	genome.wustl.edu	37	X	153996912	153996912	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NR_002969.1	+1	reviewed	NULL	0.002	27	0%	28	39.3%	0	-	-	-	-	-
DKC1	1736	genome.wustl.edu	37	X	154001487	154001487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001363.3	+1	reviewed	p.R373I	1.000	84	0%	137	27.7%	91	0%	possibly_damaging(0.598)	deleterious(0.01)	deleterious(0.613)	NULL
ENSG00000203870	0	genome.wustl.edu	37	X	154059002	154059002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	ENST00000369529	-1	known	p.P44S	0.000	125	0%	95	32.6%	0	-	probably_damaging(0.997)	-	-	NULL
F8	2157	genome.wustl.edu	37	X	154156929	154156929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000132.3	-1	reviewed	p.K1712N	0.344	240	0%	86	34.9%	0	-	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154158021	154158021	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000132.3	-1	reviewed	p.K1348N	0.000	395	0%	245	31.8%	0	-	benign(0.244)	deleterious(0.01)	neutral(0.430)	NULL
F8	2157	genome.wustl.edu	37	X	154158219	154158219	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000132.3	-1	reviewed	p.K1282	0.013	496	0%	282	23.4%	0	-	-	-	-	NULL
F8	2157	genome.wustl.edu	37	X	154158738	154158738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000132.3	-1	reviewed	p.Q1109H	0.002	172	0%	110	37.3%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
F8	2157	genome.wustl.edu	37	X	154182290	154182290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000132.3	-1	reviewed	p.L594M	1.000	161	0%	87	12.6%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154185254	154185254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000132.3	-1	reviewed	p.S577F	1.000	189	0%	99	24.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154194882	154194882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_000132.3	-1	reviewed	p.D364Y	0.000	144	0%	72	22.2%	1	0%	benign(0.004)	tolerated(0.1)	neutral(0.286)	NULL
BRCC3	79184	genome.wustl.edu	37	X	154319106	154319106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024332.2	+1	reviewed	p.K180N	1.000	268	0%	320	34.1%	27	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_JAB1/MPN domain
BRCC3	79184	genome.wustl.edu	37	X	154348284	154348284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_024332.2	+1	reviewed	p.K270N	1.000	110	0%	63	19%	28	85.7%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
RAB39B	116442	genome.wustl.edu	37	X	154490267	154490267	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_171998.2	-1	reviewed	p.R155*	1.000	138	0%	193	30.6%	0	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CLIC2	1193	genome.wustl.edu	37	X	154528133	154528133	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_001289.4	-1	reviewed	p.I86M	0.990	255	0%	290	31%	3	0%	possibly_damaging(0.706)	deleterious(0.04)	deleterious(0.603)	superfamily_Thioredoxin-like
TMLHE	55217	genome.wustl.edu	37	X	154743771	154743771	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UF-01A-11D-A10B-09	TCGA-BS-A0UF-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18b5b443-8ce2-4b3a-a0e8-f53462352b8c	3eb6c594-f11e-4eda-bf9b-b86363ce2e6e	NM_018196.3	-1	reviewed	p.E172*	1.000	132	0%	88	30.7%	16	12.5%	-	-	-	superfamily_Clavaminate synthase-like
