Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGAP3	116988	genome.wustl.edu	37	7	150835325	150835325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	7	150835325	150835325	C	T	SNP	AGAP3	NM_031946.4	human	genbank	58_37c	+1	validated	missense	c.1591	p.R531C	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AKAP1	8165	genome.wustl.edu	37	17	55183615	55183615	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	55183615	55183615	G	C	SNP	AKAP1	NM_003488.3	human	genbank	58_37c	+1	reviewed	missense	c.790	p.A264P	0.001	NULL	HMMSmart_SM00333,HMMSmart_SM00322,HMMPfam_TUDOR,HMMPfam_KH_1,HMMPfam_RII_binding_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),superfamily_Tudor/PWWP/MBT	-	no_errors
AKAP1	8165	genome.wustl.edu	37	17	55193475	55193475	+	Missense_Mutation	SNP	C	C	T	rs144078543	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	55193475	55193475	C	T	SNP	AKAP1	NM_003488.3	human	genbank	58_37c	+1	reviewed	missense	c.2285	p.T762M	0.974	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT	HMMSmart_SM00333,HMMSmart_SM00322,HMMPfam_TUDOR,HMMPfam_KH_1,HMMPfam_RII_binding_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),superfamily_Tudor/PWWP/MBT	-	no_errors
AKR1B1	231	genome.wustl.edu	37	7	134136358	134136358	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	7	134136358	134136358	C	A	SNP	AKR1B1	NM_001628.2	human	genbank	58_37c	-1	reviewed	nonsense	c.214	p.E72*	1.000	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3,PatternScan_ALDOKETO_REDUCTASE_1	-	no_errors
ALDH1L2	160428	genome.wustl.edu	37	12	105443688	105443688	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	12	105443688	105443688	G	A	SNP	ALDH1L2	NM_001034173.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1684	p.Q562*	1.000	HMMPfam_Aldedh,superfamily_ALDH-like	PatternScan_GART,HMMPfam_Formyl_trans_N,superfamily_Formyltransferase,HMMPfam_Formyl_trans_C,PatternScan_PHOSPHOPANTETHEINE,superfamily_FMT C-terminal domain-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
ANKRD27	84079	genome.wustl.edu	37	19	33134217	33134217	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	33134217	33134217	G	A	SNP	ANKRD27	NM_032139.2	human	genbank	58_37c	-1	validated	silent	c.681	p.Y227	0.594	superfamily_SSF109993	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993	-	no_errors
ASH1L	55870	genome.wustl.edu	37	1	155348180	155348182	+	Frame_Shift_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	155348180	155348182	TCT	-	DEL	ASH1L	NM_018489.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.6224	p.N2075fs	1.000	superfamily_SET domain	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_SET,HMMSmart_SM00317,HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00249,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00384,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
BRD1	23774	genome.wustl.edu	37	22	50169791	50169791	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	22	50169791	50169791	G	A	SNP	BRD1	NM_014577.1	human	genbank	58_37c	-1	reviewed	silent	c.2745	p.S915	1.000	NULL	HMMSmart_PWWP,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_BROMODOMAIN_1,HMMPfam_EPL1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SSF63748	-	no_errors
CCDC73	493860	genome.wustl.edu	37	11	32636346	32636346	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	32636346	32636346	C	T	SNP	CCDC73	NM_001008391.2	human	genbank	58_37c	-1	validated	silent	c.1518	p.T506	0.004	NULL	NULL	-	no_errors
CCDC82	79780	genome.wustl.edu	37	11	96117839	96117839	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	96117839	96117839	C	A	SNP	CCDC82	NM_024725.3	human	genbank	58_37c	-1	validated	missense	c.73	p.D25Y	1.000	NULL	NULL	-	no_errors
CCNT1	904	genome.wustl.edu	37	12	49089558	49089558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	12	49089558	49089558	C	T	SNP	CCNT1	NM_001240.2	human	genbank	58_37c	-1	reviewed	missense	c.761	p.R254H	1.000	superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
CDH12	1010	genome.wustl.edu	37	5	21802509	21802509	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	5	21802509	21802509	C	G	SNP	CDH12	NM_004061.3	human	genbank	58_37c	-1	reviewed	missense	c.1023	p.K341N	1.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CHD3	1107	genome.wustl.edu	37	17	7801857	7801859	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	7801857	7801859	AAG	-	DEL	CHD3	NM_001005271.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2272_2274	p.K761in_frame_del	1.000:1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00249,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE/PHD zinc finger,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_SM00487,superfamily_Chromo domain-like,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CHD5	26038	genome.wustl.edu	37	1	6209375	6209375	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	6209375	6209375	G	A	SNP	CHD5	NM_015557.1	human	genbank	58_37c	-1	provisional	silent	c.1092	p.A364	0.997	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,HMMPfam_PHD	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_CHROMO,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_RING,HMMSmart_PHD,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE_PHD_ZnF,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_DEXDc,superfamily_Chromodomain-like,HMMPfam_PHD,superfamily_SSF52540	-	no_errors
CHST8	64377	genome.wustl.edu	37	19	34263265	34263265	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	34263265	34263265	G	A	SNP	CHST8	NM_001127895.1	human	genbank	58_37c	+1	validated	missense	c.572	p.R191H	0.988	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
CPSF1	29894	genome.wustl.edu	37	8	145620395	145620395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	8	145620395	145620395	C	T	SNP	CPSF1	NM_013291.2	human	genbank	58_37c	-1	validated	missense	c.3190	p.E1064K	1.000	NULL	HMMPfam_CPSF_A	-	no_errors
CSGALNACT1	55790	genome.wustl.edu	37	8	19277864	19277864	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	8	19277864	19277864	C	T	SNP	CSGALNACT1	NM_001130518.1	human	genbank	58_37c	-1	validated	silent	c.1119	p.L373	1.000	HMMPfam_CHGN,superfamily_SSF53448	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors
DBN1	1627	genome.wustl.edu	37	5	176899140	176899140	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	5	176899140	176899140	T	G	SNP	DBN1	NM_080881.2	human	genbank	58_37c	-1	reviewed	missense	c.72	p.R24S	0.999	HMMPfam_Cofilin_ADF,HMMSmart_ADF	HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11572453	11572453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	11572453	11572453	C	T	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	missense	c.2804	p.P935L	0.999	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EHD2	30846	genome.wustl.edu	37	19	48239666	48239666	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	48239666	48239666	C	T	SNP	EHD2	NM_014601.3	human	genbank	58_37c	+1	reviewed	missense	c.956	p.P319L	1.000	NULL	HMMSmart_SM00027,HMMPfam_Dynamin_N,PatternScan_EF_HAND_1,superfamily_EF-hand,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ERV3	2086	genome.wustl.edu	37	7	64453178	64453178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	7	64453178	64453178	C	T	SNP	ERV3	NM_001007253.3	human	genbank	58_37c	-1	reviewed	missense	c.227	p.G76D	0.828	NULL	NULL	-	no_errors
EYA1	2138	genome.wustl.edu	37	8	72234498	72234498	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	8	72234498	72234498	C	T	SNP	EYA1	NM_000503.4	human	genbank	58_37c	-1	reviewed	missense	c.208	p.G70R	1.000	NULL	HMMPfam_Hydrolase	-	no_errors
L3MBTL	26013	genome.wustl.edu	37	20	42164575	42164575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	20	42164575	42164575	C	T	SNP	L3MBTL	NM_015478.5	human	genbank	58_37c	+1	reviewed	missense	c.1654	p.R552W	1.000	HMMPfam_zf-C2HC,superfamily_CCHHC domain	HMMPfam_zf-C2HC,HMMPfam_MBT,HMMSmart_SM00561,superfamily_CCHHC domain,superfamily_Tudor/PWWP/MBT	-	no_errors
LIPH	200879	genome.wustl.edu	37	3	185252919	185252919	+	Silent	SNP	G	G	A	rs139264479	byCluster;byFrequency;by1000genomes	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	3	185252919	185252919	G	A	SNP	LIPH	NM_139248.2	human	genbank	58_37c	-1	reviewed	silent	c.51	p.D17	0.667	superfamily_SSF53474	PatternScan_LIPASE_SER,HMMPfam_Lipase,superfamily_SSF53474	-	no_errors
LLGL1	3996	genome.wustl.edu	37	17	18145941	18145941	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	17	18145941	18145941	G	C	SNP	LLGL1	NM_004140.3	human	genbank	58_37c	+1	reviewed	missense	c.3115	p.G1039R	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
LOC100288367	0	genome.wustl.edu	37	15	84949664	84949664	+	Missense_Mutation	SNP	A	A	G	rs11632988	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	15	84949664	84949664	A	G	SNP	LOC100288367	XM_002343378.1	human	genbank	58_37c	+1	model	missense	c.497	p.Q166R	0.983	NULL	NULL	-	no_errors
MAGI3	260425	genome.wustl.edu	37	1	114184725	114184725	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	114184725	114184725	C	G	SNP	MAGI3	NM_001142782.1	human	genbank	58_37c	+1	validated	nonsense	c.1553	p.S518*	0.963	NULL	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GLY_RADICAL_1,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540	-	no_errors
MAP3K6	9064	genome.wustl.edu	37	1	27685006	27685006	+	Nonsense_Mutation	SNP	G	G	A	rs140615374	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	27685006	27685006	G	A	SNP	MAP3K6	NM_004672.3	human	genbank	58_37c	-1	reviewed	nonsense	c.2680	p.R894*	0.959	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MORN1	79906	genome.wustl.edu	37	1	2268205	2268205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	2268205	2268205	G	A	SNP	MORN1	NM_024848.1	human	genbank	58_37c	-1	provisional	missense	c.1121	p.P374L	0.347	NULL	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	-	no_errors
MSN	4478	genome.wustl.edu	37	X	64955188	64955188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	X	64955188	64955188	G	A	SNP	MSN	NM_002444.2	human	genbank	58_37c	+1	reviewed	missense	c.855	p.M285I	1.000	HMMPfam_FERM_C,superfamily_SSF50729	superfamily_Moesin,HMMPfam_ERM,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
NCAM1	4684	genome.wustl.edu	37	11	113130919	113130919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	113130919	113130919	G	A	SNP	NCAM1	ENST00000401611	human	ensembl	58_37c	+1	known	missense	c.1726	p.V576I	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
OSBPL2	9885	genome.wustl.edu	37	20	60859166	60859166	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	20	60859166	60859166	T	G	SNP	OSBPL2	NM_144498.1	human	genbank	58_37c	+1	reviewed	missense	c.937	p.S313A	0.013	HMMPfam_Oxysterol_BP	HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
PDE4B	5142	genome.wustl.edu	37	1	66838015	66838015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	66838015	66838015	T	C	SNP	PDE4B	NM_001037341.1	human	genbank	58_37c	+1	reviewed	missense	c.1865	p.I622T	1.000	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RANBP3	8498	genome.wustl.edu	37	19	5925701	5925701	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	5925701	5925701	G	C	SNP	RANBP3	NM_007322.2	human	genbank	58_37c	-1	reviewed	missense	c.861	p.H287Q	0.988	NULL	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like	-	no_errors
RBM33	155435	genome.wustl.edu	37	7	155532539	155532539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	7	155532539	155532539	C	T	SNP	RBM33	NM_053043.2	human	genbank	58_37c	+1	validated	missense	c.1868	p.P623L	0.003	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RPS6KA5	9252	genome.wustl.edu	37	14	91341643	91341643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	14	91341643	91341643	C	T	SNP	RPS6KA5	NM_004755.2	human	genbank	58_37c	-1	validated	missense	c.1898	p.S633N	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237608817	237608817	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	237608817	237608817	T	C	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	silent	c.1287	p.F429	0.994	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SCYL3	57147	genome.wustl.edu	37	1	169823868	169823868	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	169823868	169823868	T	C	SNP	SCYL3	NM_181093.2	human	genbank	58_37c	-1	validated	missense	c.1712	p.D571G	0.990	NULL	HMMPfam_HEAT,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat	-	no_errors
SFRS17A	8227	genome.wustl.edu	37	X	1719897	1719897	+	Missense_Mutation	SNP	C	G	G	rs144881287	by1000genomes	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	X	1719897	1719897	C	G	SNP	SFRS17A	NM_005088.2	human	genbank	58_37c	+1	validated	missense	c.1498	p.P500A	0.000	NULL	NULL	-	no_errors
SH3KBP1	30011	genome.wustl.edu	37	X	19854375	19854375	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	X	19854375	19854375	G	A	SNP	SH3KBP1	NM_031892.2	human	genbank	58_37c	-1	reviewed	silent	c.30	p.Y10	1.000	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
SMARCC2	6601	genome.wustl.edu	37	12	56558356	56558356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	12	56558356	56558356	C	T	SNP	SMARCC2	NM_003075.3	human	genbank	58_37c	-1	reviewed	missense	c.3299	p.G1100D	1.000	NULL	HMMSmart_SM00298,HMMSmart_SM00717,superfamily_BRCT domain,HMMPfam_SWIRM,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
SSX6	280657	genome.wustl.edu	37	X	47969636	47969636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	X	47969636	47969636	C	T	SNP	SSX6	ENST00000304314	human	ensembl	58_37c	+1	known	missense	c.113	p.T38I	0.006	NULL	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SSXRD	-	no_errors
TCF4	6925	genome.wustl.edu	37	18	52896202	52896202	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	18	52896202	52896202	G	A	SNP	TCF4	NM_001083962.1	human	genbank	58_37c	-1	reviewed	silent	c.1755	p.N585	0.998	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
TRIM64B	0	genome.wustl.edu	37	11	89604106	89604106	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	89604106	89604106	C	A	SNP	TRIM64B	ENST00000329862	human	ensembl	58_37c	-1	known	missense	c.1033	p.D345Y	0.884	HMMPfam_SPRY	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
VWF	7450	genome.wustl.edu	37	12	6080875	6080875	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	12	6080875	6080875	C	G	SNP	VWF	NM_000552.3	human	genbank	58_37c	-1	reviewed	missense	c.7438	p.G2480R	1.000	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL,superfamily_vWA-like	-	no_errors
YIF1A	10897	genome.wustl.edu	37	11	66055109	66055109	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	11	66055109	66055109	G	T	SNP	YIF1A	NM_020470.2	human	genbank	58_37c	-1	validated	silent	c.387	p.P129	0.696	HMMPfam_YIF1	HMMPfam_YIF1	-	no_errors
ZBTB40	9923	genome.wustl.edu	37	1	22839582	22839582	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	1	22839582	22839582	C	T	SNP	ZBTB40	NM_001083621.1	human	genbank	58_37c	+1	validated	missense	c.2627	p.A876V	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZSWIM4	65249	genome.wustl.edu	37	19	13936517	13936517	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12U-01A-11D-A10Y-09	TCGA-C8-A12U-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	444a1ef9-819a-41dc-baef-22057225efcd	e7b0ba1b-04c8-48f1-ba7d-844ae3f70916	19	13936517	13936517	T	G	SNP	ZSWIM4	NM_023072.2	human	genbank	58_37c	+1	validated	missense	c.2018	p.L673R	1.000	NULL	HMMPfam_SWIM	-	no_errors
