Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
CAMTA1	23261	genome.wustl.edu	37	1	7792621	7792621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	7792621	7792621	G	A	SNP	CAMTA1	NM_015215.1	human	genbank	58_37c	+1	validated	missense	c.3028	p.G1010S	0.998	NULL	HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CNTNAP4	85445	genome.wustl.edu	37	16	76572213	76572213	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	16	76572213	76572213	C	A	SNP	CNTNAP4	NM_138994.3	human	genbank	58_37c	+1	validated	missense	c.2977	p.L993I	1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
CRX	1406	genome.wustl.edu	37	19	48342988	48342988	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	19	48342988	48342988	C	A	SNP	CRX	NM_000554.4	human	genbank	58_37c	+1	reviewed	missense	c.664	p.L222I	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
EXT1	2131	genome.wustl.edu	37	8	118849379	118849379	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	8	118849379	118849379	G	T	SNP	EXT1	NM_000127.2	human	genbank	58_37c	-1	reviewed	missense	c.1024	p.L342I	1.000	HMMPfam_Exostosin	HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
ILF2	3608	genome.wustl.edu	37	1	153635526	153635526	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	153635526	153635526	C	G	SNP	ILF2	NM_004515.2	human	genbank	58_37c	-1	reviewed	missense	c.890	p.R297T	1.000	HMMPfam_DZF,HMMSmart_SM00572	HMMPfam_DZF,HMMSmart_SM00572,superfamily_Nucleotidyltransferase	-	no_errors
LOXL1	4016	genome.wustl.edu	37	15	74239446	74239446	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	15	74239446	74239446	T	C	SNP	LOXL1	NM_005576.2	human	genbank	58_37c	+1	reviewed	missense	c.1388	p.L463P	1.000	HMMPfam_Lysyl_oxidase	HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors
MFN1	55669	genome.wustl.edu	37	3	179107927	179107927	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	3	179107927	179107927	G	T	SNP	MFN1	NM_033540.2	human	genbank	58_37c	+1	reviewed	splice_site	c.2147+1	e16+1	1.000	-	-	-	no_errors
NOL12	79159	genome.wustl.edu	37	22	38082463	38082463	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	22	38082463	38082463	T	G	SNP	NOL12	NM_024313.2	human	genbank	58_37c	+1	validated	missense	c.64	p.F22V	1.000	HMMPfam_Nop25	HMMPfam_Nop25	-	no_errors
NPR3	4883	genome.wustl.edu	37	5	32786414	32786414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	5	32786414	32786414	G	C	SNP	NPR3	NM_000908.2	human	genbank	58_37c	+1	validated	missense	c.1586	p.R529P	1.000	NULL	PatternScan_ANF_RECEPTORS,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	-	no_errors
NUDT1	4521	genome.wustl.edu	37	7	2290629	2290629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	7	2290629	2290629	C	T	SNP	NUDT1	NM_198949.1	human	genbank	58_37c	+1	reviewed	missense	c.533	p.T178M	0.000	superfamily_Nudix	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX	-	no_errors
OPN4	94233	genome.wustl.edu	37	10	88416983	88416983	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	10	88416983	88416983	C	T	SNP	OPN4	NM_001030015.2	human	genbank	58_37c	+1	validated	nonsense	c.322	p.Q108*	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN,superfamily_SSF81321	-	no_errors
PKNOX2	63876	genome.wustl.edu	37	11	125255595	125255595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	11	125255595	125255595	G	A	SNP	PKNOX2	NM_022062.2	human	genbank	58_37c	+1	validated	missense	c.376	p.D126N	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
RPL3L	6123	genome.wustl.edu	37	16	2002953	2002953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	16	2002953	2002953	G	A	SNP	RPL3L	NM_005061.2	human	genbank	58_37c	-1	reviewed	missense	c.287	p.P96L	0.530	HMMPfam_Ribosomal_L3,superfamily_Translat_factor	HMMPfam_Ribosomal_L3,superfamily_Translat_factor,PatternScan_RIBOSOMAL_L3	-	no_errors
SAAL1	113174	genome.wustl.edu	37	11	18127530	18127531	+	In_Frame_Ins	INS	-	-	CCTCCT	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	11	18127530	18127531	-	CCTCCT	INS	SAAL1	NM_138421.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.59_58	p.20in_frame_insEE	0.000:0.002	NULL	superfamily_ARM-type_fold	-	no_errors
SSTR4	6754	genome.wustl.edu	37	20	23017092	23017092	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	20	23017092	23017092	G	T	SNP	SSTR4	NM_001052.2	human	genbank	58_37c	+1	validated	silent	c.972	p.R324	0.981	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
SYT6	148281	genome.wustl.edu	37	1	114640409	114640409	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	1	114640409	114640409	G	A	SNP	SYT6	NM_205848.2	human	genbank	58_37c	-1	validated	silent	c.1200	p.Y400	1.000	HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
ZFHX4	79776	genome.wustl.edu	37	8	77618671	77618671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	b8728982-8254-4aa8-baa5-aaeb6d852260	39fd48ad-1e61-424b-85ce-8c2883ae41b7	8	77618671	77618671	G	A	SNP	ZFHX4	NM_024721.4	human	genbank	58_37c	+1	validated	missense	c.2348	p.R783Q	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
