Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS16	170690	genome.wustl.edu	37	5	5318312	5318312	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	5318312	5318312	G	A	SNP	ADAMTS16	NM_139056.2	human	genbank	58_37c	+1	reviewed	silent	c.3477	p.P1159	0.106	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
BCL6	604	genome.wustl.edu	37	3	187451419	187451419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	187451419	187451419	G	C	SNP	BCL6	NM_001130845.1	human	genbank	58_37c	-1	reviewed	missense	c.63	p.N21K	1.000	superfamily_POZ domain	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BRS3	680	genome.wustl.edu	37	X	135574435	135574435	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	X	135574435	135574435	G	A	SNP	BRS3	NM_001727.1	human	genbank	58_37c	+1	validated	silent	c.1101	p.V367	0.036	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
C1orf200	644997	genome.wustl.edu	37	1	9714541	9714542	+	RNA	INS	-	-	CA	rs56235370	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	9714541	9714542	-	CA	INS	C1orf200	NR_027045.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
C6	729	genome.wustl.edu	37	5	41159254	41159254	+	Nonsense_Mutation	SNP	G	G	A	rs142881576	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	41159254	41159254	G	A	SNP	C6	NM_000065.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1786	p.R596*	0.021	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_KAZAL,HMMSmart_FIMAC,HMMPfam_Kazal_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module	-	no_errors
C9orf142	286257	genome.wustl.edu	37	9	139888077	139888077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	9	139888077	139888077	G	A	SNP	C9orf142	NM_183241.1	human	genbank	58_37c	+1	predicted	missense	c.536	p.R179Q	0.998	NULL	NULL	-	no_errors
C9orf69	90120	genome.wustl.edu	37	9	139008534	139008534	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	9	139008534	139008534	A	T	SNP	C9orf69	NM_152833.2	human	genbank	58_37c	-1	validated	missense	c.287	p.V96E	0.996	NULL	NULL	-	no_errors
CARKD	55739	genome.wustl.edu	37	13	111274599	111274599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	13	111274599	111274599	C	T	SNP	CARKD	NM_018210.2	human	genbank	58_37c	+1	validated	missense	c.137	p.S46L	0.020	NULL	HMMPfam_Carb_kinase,superfamily_SSF53613	-	no_errors
CCDC141	285025	genome.wustl.edu	37	2	179730515	179730515	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	2	179730515	179730515	G	A	SNP	CCDC141	NM_173648.2	human	genbank	58_37c	-1	provisional	silent	c.978	p.A326	0.000	NULL	NULL	-	no_errors
CCDC67	159989	genome.wustl.edu	37	11	93097377	93097377	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	93097377	93097377	C	T	SNP	CCDC67	NM_181645.3	human	genbank	58_37c	+1	validated	nonsense	c.349	p.Q117*	1.000	NULL	NULL	-	no_errors
CDH20	28316	genome.wustl.edu	37	18	59167643	59167643	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	18	59167643	59167643	C	A	SNP	CDH20	NM_031891.2	human	genbank	58_37c	+1	reviewed	missense	c.569	p.T190K	1.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CHPF	79586	genome.wustl.edu	37	2	220405780	220405780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	2	220405780	220405780	C	T	SNP	CHPF	NM_024536.5	human	genbank	58_37c	-1	validated	missense	c.956	p.R319Q	0.873	HMMPfam_CHGN	HMMPfam_CHGN	-	no_errors
DENND1C	79958	genome.wustl.edu	37	19	6480063	6480063	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	6480063	6480063	C	T	SNP	DENND1C	NM_024898.2	human	genbank	58_37c	-1	validated	splice_site	c.18-1	e2-1	0.919	-	-	-	no_errors
DHX30	22907	genome.wustl.edu	37	3	47891404	47891404	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	47891404	47891404	C	T	SNP	DHX30	NM_138615.2	human	genbank	58_37c	+1	reviewed	missense	c.3379	p.R1127W	0.999	NULL	HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_dsRNA-binding domain-like	-	no_errors
DNAJB4	11080	genome.wustl.edu	37	1	78481910	78481910	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	78481910	78481910	G	A	SNP	DNAJB4	NM_007034.3	human	genbank	58_37c	+1	provisional	silent	c.993	p.R331	1.000	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain,PatternScan_DNAJ_1	-	no_errors
EGFLAM	133584	genome.wustl.edu	37	5	38407953	38407953	+	Silent	SNP	G	G	A	rs138226534	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	38407953	38407953	G	A	SNP	EGFLAM	NM_152403.2	human	genbank	58_37c	+1	validated	silent	c.1194	p.T398	0.998	superfamily_ConA_like_lec_gl	HMMSmart_LamG,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_EGF,HMMSmart_EGF,superfamily_FN_III-like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
FAM48B1	170067	genome.wustl.edu	37	X	24383517	24383517	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	X	24383517	24383517	C	T	SNP	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	silent	c.2640	p.G880	0.000	NULL	NULL	-	no_errors
FES	2242	genome.wustl.edu	37	15	91436887	91436887	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	91436887	91436887	C	A	SNP	FES	NM_002005.3	human	genbank	58_37c	+1	reviewed	missense	c.2049	p.D683E	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
FGF4	2249	genome.wustl.edu	37	11	69588113	69588113	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	69588113	69588113	G	T	SNP	FGF4	NM_002007.2	human	genbank	58_37c	-1	reviewed	silent	c.585	p.P195	0.999	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like	HMMPfam_FGF,HMMSmart_FGF,PatternScan_HBGF_FGF,superfamily_Cytok_IL1_like	-	no_errors
FMO1	2326	genome.wustl.edu	37	1	171251383	171251383	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	171251383	171251383	C	A	SNP	FMO1	NM_002021.1	human	genbank	58_37c	+1	reviewed	missense	c.1094	p.T365N	1.000	HMMPfam_FMO-like	HMMPfam_FMO-like,PatternScan_LIPOCALIN,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain	-	no_errors
GABARAP	11337	genome.wustl.edu	37	17	7145570	7145570	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	7145570	7145570	T	C	SNP	GABARAP	NM_007278.1	human	genbank	58_37c	-1	reviewed	missense	c.80	p.D27G	1.000	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like	-	no_errors
GDF6	392255	genome.wustl.edu	37	8	97157010	97157010	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	8	97157010	97157010	G	A	SNP	GDF6	ENST00000435084	human	ensembl	58_37c	-1	known	nonsense	c.898	p.R300*	1.000	NULL	HMMPfam_TGFb_propeptide	-	no_errors
HERC1	8925	genome.wustl.edu	37	15	63970199	63970199	+	Silent	SNP	G	G	C	rs183440649	by1000genomes	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	63970199	63970199	G	C	SNP	HERC1	NM_003922.3	human	genbank	58_37c	-1	reviewed	silent	c.6915	p.P2305	0.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00320,HMMPfam_SPRY,PatternScan_ARGINASE_2,PatternScan_PHOSPHOPANTETHEINE,superfamily_RCC1/BLIP-II,superfamily_WD40 repeat-like,HMMSmart_SM00449,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
HMCN1	83872	genome.wustl.edu	37	1	185984285	185984295	+	Splice_Site	DEL	TTGTAGTTCCA	TTGTAGTTCCA	-	rs11267350	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	TTGTAGTTCCA	TTGTAGTTCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	185984285	185984295	TTGTAGTTCCA	-	DEL	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.4637_4635	p.I1546fs	0.019:0.000:0.000:0.035:0.997:1.000:1.000:0.999:1.000:1.000:1.000	HMMPfam_I-set,superfamily_Immunoglobulin	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
HNRNPA1L2	144983	genome.wustl.edu	37	13	53217035	53217035	+	Silent	SNP	C	C	A	rs78145640	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	13	53217035	53217035	C	A	SNP	HNRNPA1L2	NM_001011724.1	human	genbank	58_37c	+1	validated	silent	c.408	p.I136	0.998	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
HOXB2	3212	genome.wustl.edu	37	17	46620904	46620904	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	46620904	46620904	C	A	SNP	HOXB2	NM_002145.3	human	genbank	58_37c	-1	reviewed	missense	c.597	p.K199N	1.000	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	HMMPfam_Homeobox,HMMSmart_HOX,PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
IFT81	28981	genome.wustl.edu	37	12	110566885	110566885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	110566885	110566885	G	A	SNP	IFT81	NM_001143779.1	human	genbank	58_37c	+1	validated	missense	c.379	p.V127I	0.998	NULL	NULL	-	no_errors
IRAK4	51135	genome.wustl.edu	37	12	44180307	44180307	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	44180307	44180307	G	T	SNP	IRAK4	NM_001114182.2	human	genbank	58_37c	+1	reviewed	missense	c.1294	p.V432F	0.892	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),superfamily_DEATH domain,HMMPfam_Pkinase	-	no_errors
KBTBD8	84541	genome.wustl.edu	37	3	67054333	67054333	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	67054333	67054333	G	A	SNP	KBTBD8	NM_032505.2	human	genbank	58_37c	+1	validated	silent	c.864	p.V288	0.999	superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KIAA1199	57214	genome.wustl.edu	37	15	81176528	81176528	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	81176528	81176528	T	C	SNP	KIAA1199	NM_018689.1	human	genbank	58_37c	+1	validated	silent	c.630	p.Y210	0.125	NULL	HMMPfam_G8	-	no_errors
KIAA1257	57501	genome.wustl.edu	37	3	128707653	128707653	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	128707653	128707653	A	G	SNP	KIAA1257	NM_020741.2	human	genbank	58_37c	-1	predicted	missense	c.371	p.L124P	1.000	NULL	NULL	-	no_errors
LOC100009676	0	genome.wustl.edu	37	3	101395420	101395420	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	101395420	101395420	C	T	SNP	LOC100009676	NR_024407.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56160565	56160565	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	56160565	56160565	A	C	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	missense	c.839	p.Q280P	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56177598	56177598	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	5	56177598	56177598	G	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.2571	p.A858fs	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MKNK2	2872	genome.wustl.edu	37	19	2041144	2041144	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	2041144	2041144	G	T	SNP	MKNK2	NM_199054.2	human	genbank	58_37c	-1	validated	silent	c.1005	p.A335	0.993	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MYB	4602	genome.wustl.edu	37	6	135511399	135511399	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	6	135511399	135511399	G	A	SNP	MYB	NM_001130173.1	human	genbank	58_37c	+1	reviewed	nonsense	c.441	p.W147*	1.000	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors
MYBPC2	4606	genome.wustl.edu	37	19	50939058	50939058	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	50939058	50939058	G	A	SNP	MYBPC2	NM_004533.3	human	genbank	58_37c	+1	validated	silent	c.135	p.P45	0.117	NULL	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
MYBPC2	4606	genome.wustl.edu	37	19	50964798	50964798	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	19	50964798	50964798	G	A	SNP	MYBPC2	NM_004533.3	human	genbank	58_37c	+1	validated	splice_site	c.2932-1	e25-1	1.000	-	-	-	no_errors
MYH13	8735	genome.wustl.edu	37	17	10213133	10213133	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	10213133	10213133	G	A	SNP	MYH13	NM_003802.2	human	genbank	58_37c	-1	validated	silent	c.4671	p.H1557	0.622	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NALCN	259232	genome.wustl.edu	37	13	101756927	101756927	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	13	101756927	101756927	A	T	SNP	NALCN	NM_052867.2	human	genbank	58_37c	-1	validated	missense	c.2711	p.M904K	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
PCNXL3	399909	genome.wustl.edu	37	11	65396838	65396838	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	65396838	65396838	G	A	SNP	PCNXL3	NM_032223.2	human	genbank	58_37c	+1	validated	missense	c.3952	p.V1318M	1.000	NULL	HMMPfam_Pecanex_C	-	no_errors
PCSK6	5046	genome.wustl.edu	37	15	101910696	101910696	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	101910696	101910696	G	A	SNP	PCSK6	ENST00000331826	human	ensembl	58_37c	-1	known	missense	c.1562	p.T521M	0.145	superfamily_Galactose-binding domain-like	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,HMMSmart_SM00181,HMMSmart_SM00261,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Galactose-binding domain-like,superfamily_Protease propeptides/inhibitors,superfamily_Growth factor receptor domain	-	no_errors
PDHA2	5161	genome.wustl.edu	37	4	96761984	96761984	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	4	96761984	96761984	G	T	SNP	PDHA2	NM_005390.4	human	genbank	58_37c	+1	validated	missense	c.683	p.G228V	1.000	HMMPfam_E1_dh,superfamily_SSF52518	HMMPfam_E1_dh,superfamily_SSF52518	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLEKHG1	57480	genome.wustl.edu	37	6	151055039	151055039	+	Silent	SNP	G	G	A	rs147707807	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	6	151055039	151055039	G	A	SNP	PLEKHG1	NM_001029884.1	human	genbank	58_37c	+1	provisional	silent	c.222	p.T74	0.011	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
POLR3B	55703	genome.wustl.edu	37	12	106824180	106824180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	106824180	106824180	G	A	SNP	POLR3B	NM_018082.5	human	genbank	58_37c	+1	validated	missense	c.1393	p.V465M	1.000	HMMPfam_RNA_pol_Rpb2_3,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
RARS2	57038	genome.wustl.edu	37	6	88279250	88279250	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	6	88279250	88279250	G	T	SNP	RARS2	NM_020320.3	human	genbank	58_37c	-1	reviewed	missense	c.95	p.P32Q	0.996	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain	PatternScan_AA_TRNA_LIGASE_I,superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain,HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase	-	no_errors
RNF103	7844	genome.wustl.edu	37	2	86832076	86832076	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	2	86832076	86832076	C	T	SNP	RNF103	NM_005667.2	human	genbank	58_37c	-1	reviewed	silent	c.948	p.L316	1.000	NULL	HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ROBO2	6092	genome.wustl.edu	37	3	77623847	77623847	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	77623847	77623847	T	G	SNP	ROBO2	NM_002942.3	human	genbank	58_37c	+1	reviewed	missense	c.2169	p.D723E	0.996	superfamily_Fibronectin type III	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
RRP1	8568	genome.wustl.edu	37	21	45217847	45217847	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	21	45217847	45217847	C	T	SNP	RRP1	NM_003683.5	human	genbank	58_37c	+1	reviewed	missense	c.677	p.P226L	0.990	NULL	HMMPfam_Nop52	-	no_errors
SBF2	81846	genome.wustl.edu	37	11	9989966	9989966	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	11	9989966	9989966	T	A	SNP	SBF2	NM_030962.3	human	genbank	58_37c	-1	reviewed	missense	c.1522	p.N508Y	1.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GRAM,HMMSmart_SM00568,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SLC16A12	387700	genome.wustl.edu	37	10	91198855	91198855	+	Silent	SNP	G	G	A	rs192441993	by1000genomes	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	10	91198855	91198855	G	A	SNP	SLC16A12	NM_213606.3	human	genbank	58_37c	-1	validated	silent	c.444	p.I148	0.937	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC5A9	200010	genome.wustl.edu	37	1	48703432	48703432	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	48703432	48703432	C	A	SNP	SLC5A9	NM_001135181.1	human	genbank	58_37c	+1	validated	missense	c.1449	p.D483E	1.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors
SRGAP3	9901	genome.wustl.edu	37	3	9027246	9027246	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	9027246	9027246	T	C	SNP	SRGAP3	NM_014850.2	human	genbank	58_37c	-1	validated	missense	c.3257	p.K1086R	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_GTPase activation domain GAP	-	no_errors
TAF3	83860	genome.wustl.edu	37	10	8006835	8006835	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	10	8006835	8006835	C	G	SNP	TAF3	NM_031923.2	human	genbank	58_37c	+1	provisional	silent	c.1362	p.S454	0.065	NULL	HMMSmart_PHD,HMMPfam_Bromo_TP,HMMSmart_BTP,superfamily_Histone-fold,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
TAOK3	51347	genome.wustl.edu	37	12	118590144	118590144	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	12	118590144	118590144	A	G	SNP	TAOK3	NM_016281.3	human	genbank	58_37c	-1	validated	missense	c.2423	p.L808P	1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TBL1XR1	79718	genome.wustl.edu	37	3	176744190	176744190	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	176744190	176744190	T	A	SNP	TBL1XR1	NM_024665.4	human	genbank	58_37c	-1	reviewed	nonsense	c.1489	p.K497*	1.000	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,HMMSmart_LisH,superfamily_WD40_like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TBL1XR1	79718	genome.wustl.edu	37	3	176771659	176771659	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	3	176771659	176771659	G	A	SNP	TBL1XR1	NM_024665.4	human	genbank	58_37c	-1	reviewed	nonsense	c.106	p.Q36*	1.000	HMMSmart_LisH	HMMSmart_WD40,HMMSmart_LisH,superfamily_WD40_like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TLN2	83660	genome.wustl.edu	37	15	63102180	63102180	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	63102180	63102180	C	T	SNP	TLN2	NM_015059.2	human	genbank	58_37c	+1	reviewed	silent	c.6720	p.F2240	0.567	NULL	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729	-	no_errors
TRPM1	4308	genome.wustl.edu	37	15	31295003	31295003	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	15	31295003	31295003	G	A	SNP	TRPM1	NM_002420.4	human	genbank	58_37c	-1	reviewed	silent	c.3834	p.N1278	0.024	NULL	HMMPfam_Ion_trans	-	no_errors
USP6	9098	genome.wustl.edu	37	17	5072218	5072218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	17	5072218	5072218	G	A	SNP	USP6	NM_004505.2	human	genbank	58_37c	+1	validated	missense	c.3385	p.E1129K	0.949	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
YY1AP1	55249	genome.wustl.edu	37	1	155649105	155649105	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	1	155649105	155649105	C	G	SNP	YY1AP1	ENST00000436865	human	ensembl	58_37c	-1	known	splice_site	c.126-1	e3-1	0.000	-	-	-	no_errors
ZFHX3	463	genome.wustl.edu	37	16	72830186	72830186	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	16	72830186	72830186	T	C	SNP	ZFHX3	NM_006885.3	human	genbank	58_37c	-1	reviewed	missense	c.6395	p.Y2132C	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFYVE27	118813	genome.wustl.edu	37	10	99502856	99502856	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A15G-01A-11D-A12B-09	TCGA-E2-A15G-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	d45bb60a-e73b-4b95-8637-e8d17fcca745	9b5d1a2f-ccca-45de-b995-85754015b39c	10	99502856	99502856	A	-	DEL	ZFYVE27	NM_001002261.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.203	p.Q68fs	1.000	NULL	HMMPfam_FYVE,HMMSmart_FYVE,superfamily_FYVE_PHD_ZnF	-	no_errors
