Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALOX12B	242	genome.wustl.edu	37	17	7989371	7989371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	17	7989371	7989371	C	T	SNP	ALOX12B	NM_001139.2	human	genbank	58_37c	-1	reviewed	missense	c.315	p.M105I	0.947	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxygenase	-	no_errors
AMICA1	120425	genome.wustl.edu	37	11	118081378	118081378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	11	118081378	118081378	C	T	SNP	AMICA1	NM_001098526.1	human	genbank	58_37c	-1	validated	missense	c.248	p.R83H	1.000	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
ATAD2B	54454	genome.wustl.edu	37	2	24118722	24118722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	2	24118722	24118722	C	A	SNP	ATAD2B	NM_017552.1	human	genbank	58_37c	-1	validated	missense	c.335	p.R112L	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,PatternScan_BROMODOMAIN_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ATF5	22809	genome.wustl.edu	37	19	50436338	50436338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	50436338	50436338	C	T	SNP	ATF5	NM_012068.4	human	genbank	58_37c	+1	validated	missense	c.838	p.R280C	0.002	NULL	HMMSmart_BRLZ,HMMPfam_bZIP_1	-	no_errors
AZGP1	563	genome.wustl.edu	37	7	99573626	99573626	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	7	99573626	99573626	A	G	SNP	AZGP1	NM_001185.3	human	genbank	58_37c	-1	validated	silent	c.18	p.P6	0.646	NULL	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
BCAT1	586	genome.wustl.edu	37	12	24982785	24982785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	12	24982785	24982785	C	T	SNP	BCAT1	NM_005504.6	human	genbank	58_37c	-1	reviewed	missense	c.1091	p.R364H	0.987	HMMPfam_Aminotran_4,superfamily_Aminotrans_IV	HMMPfam_Aminotran_4,superfamily_Aminotrans_IV,PatternScan_AA_TRANSFER_CLASS_4	-	no_errors
BCL2L11	10018	genome.wustl.edu	37	2	111907761	111907761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	2	111907761	111907761	C	T	SNP	BCL2L11	ENST00000452033	human	ensembl	58_37c	+1	known	missense	c.136	p.P46S	0.000	NULL	HMMPfam_Bclx_interact	-	no_errors
C6orf142	90523	genome.wustl.edu	37	6	53883886	53883886	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	6	53883886	53883886	G	T	SNP	C6orf142	NM_138569.2	human	genbank	58_37c	+1	validated	silent	c.60	p.L20	0.793	NULL	NULL	-	no_errors
CCNB1	891	genome.wustl.edu	37	5	68470891	68470891	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	5	68470891	68470891	G	T	SNP	CCNB1	NM_031966.2	human	genbank	58_37c	+1	reviewed	missense	c.893	p.G298V	0.999	HMMPfam_Cyclin_N,superfamily_Cyclin_like	HMMPfam_Cyclin_C,HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
CDC42BPG	55561	genome.wustl.edu	37	11	64600178	64600178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	11	64600178	64600178	C	T	SNP	CDC42BPG	NM_017525.2	human	genbank	58_37c	-1	validated	missense	c.2903	p.R968H	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_PBD,HMMSmart_SM00133,HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_DMPK_coil,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
CDH9	1007	genome.wustl.edu	37	5	26906161	26906161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	5	26906161	26906161	C	T	SNP	CDH9	NM_016279.3	human	genbank	58_37c	-1	reviewed	missense	c.718	p.D240N	1.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
COL4A1	1282	genome.wustl.edu	37	13	110850853	110850853	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	13	110850853	110850853	G	A	SNP	COL4A1	NM_001845.4	human	genbank	58_37c	-1	reviewed	missense	c.1246	p.P416S	0.913	NULL	HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like	-	no_errors
CRTAP	10491	genome.wustl.edu	37	3	33175699	33175699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	33175699	33175699	C	T	SNP	CRTAP	NM_006371.4	human	genbank	58_37c	+1	reviewed	missense	c.1094	p.T365I	1.000	NULL	NULL	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34191137	34191137	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	34191137	34191137	T	G	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.2388	p.R796S	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
CTNNAL1	8727	genome.wustl.edu	37	9	111735100	111735100	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	9	111735100	111735100	G	T	SNP	CTNNAL1	NM_003798.2	human	genbank	58_37c	-1	provisional	missense	c.1202	p.A401E	1.000	superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13759060	13759060	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	5	13759060	13759060	G	A	SNP	DNAH5	NM_001369.2	human	genbank	58_37c	-1	reviewed	silent	c.10314	p.L3438	0.005	NULL	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540	-	no_errors
DOT1L	84444	genome.wustl.edu	37	19	2213589	2213589	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	2213589	2213589	C	G	SNP	DOT1L	NM_032482.2	human	genbank	58_37c	+1	validated	missense	c.1609	p.Q537E	1.000	NULL	HMMPfam_DOT1,HMMPfam_AT_hook,HMMSmart_AT_hook,superfamily_SSF53335	-	no_errors
DSCAM	1826	genome.wustl.edu	37	21	41719610	41719610	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	21	41719610	41719610	C	T	SNP	DSCAM	NM_001389.3	human	genbank	58_37c	-1	validated	silent	c.1197	p.Q399	0.996	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
EIF3H	8667	genome.wustl.edu	37	8	117671073	117671073	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	8	117671073	117671073	C	A	SNP	EIF3H	NM_003756.2	human	genbank	58_37c	-1	validated	nonsense	c.436	p.E146*	1.000	HMMPfam_Mov34,HMMSmart_SM00232	HMMPfam_Mov34,HMMSmart_SM00232	-	no_errors
ENSG00000228443	0	genome.wustl.edu	37	16	953546	953546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	26163687-7ede-43be-aeb7-21ad33133d45	16	953546	953546	G	T	SNP	LMF1	NM_022773.2	human	genbank	58_37c	-1	reviewed	intronic	c.663+7385	e4+7385	0.661	-	-	-	no_errors
ENSG00000246966	0	genome.wustl.edu	37	12	70932079	70932079	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	12	70932079	70932079	T	C	SNP	ENSG00000246966	ENST00000501222	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
ESRRG	2104	genome.wustl.edu	37	1	216680202	216680202	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	216680202	216680202	C	G	SNP	ESRRG	NR_024099.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
FGFR2	2263	genome.wustl.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	rs121913476	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	10	123258034	123258034	A	T	SNP	FGFR2	NM_022970.3	human	genbank	58_37c	-1	reviewed	missense	c.1650	p.N550K	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
FN1	2335	genome.wustl.edu	37	2	216288147	216288147	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	2	216288147	216288147	C	A	SNP	FN1	NM_212482.1	human	genbank	58_37c	-1	reviewed	missense	c.1319	p.R440I	0.999	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,superfamily_Kringle-like	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_EGF_1,superfamily_Kringle-like,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Fibronectin type I module	-	no_errors
GCN1L1	10985	genome.wustl.edu	37	12	120602272	120602272	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	12	120602272	120602272	C	A	SNP	GCN1L1	NM_006836.1	human	genbank	58_37c	-1	validated	silent	c.1716	p.V572	0.963	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
GNAS	2778	genome.wustl.edu	37	20	57484421	57484421	+	Missense_Mutation	SNP	G	G	A	rs121913495	byCluster	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	20	57484421	57484421	G	A	SNP	GNAS	NM_080425.2	human	genbank	58_37c	+1	reviewed	missense	c.2531	p.R844H	1.000	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152193787	152193787	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	152193787	152193787	G	C	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.318	p.H106Q	0.067	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IPO13	9670	genome.wustl.edu	37	1	44426575	44426575	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	44426575	44426575	G	T	SNP	IPO13	NM_014652.3	human	genbank	58_37c	+1	reviewed	missense	c.2137	p.V713F	1.000	superfamily_ARM-type_fold	HMMPfam_IBN_N,HMMPfam_Xpo1,superfamily_ARM-type_fold	-	no_errors
KDR	3791	genome.wustl.edu	37	4	55955083	55955083	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	4	55955083	55955083	T	A	SNP	KDR	NM_002253.2	human	genbank	58_37c	-1	reviewed	silent	c.3462	p.S1154	0.995	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
KIAA0427	9811	genome.wustl.edu	37	18	46284669	46284669	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	18	46284669	46284669	G	C	SNP	KIAA0427	NM_001142397.1	human	genbank	58_37c	+1	validated	missense	c.964	p.E322Q	0.660	NULL	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold	-	no_errors
KLRC2	3822	genome.wustl.edu	37	12	10586464	10586466	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	12	10586464	10586466	TTC	-	DEL	KLRC2	NM_002260.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.409_407	p.R136in_frame_del	0.001:0.009:0.008	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
KRT82	3888	genome.wustl.edu	37	12	52797575	52797575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	12	52797575	52797575	C	T	SNP	KRT82	NM_033033.3	human	genbank	58_37c	-1	reviewed	missense	c.530	p.R177Q	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
L3MBTL3	84456	genome.wustl.edu	37	6	130407393	130407393	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	6	130407393	130407393	A	G	SNP	L3MBTL3	NM_032438.1	human	genbank	58_37c	+1	validated	missense	c.1516	p.K506E	1.000	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,superfamily_CCHHC domain,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC100131251	0	genome.wustl.edu	37	19	1768998	1769006	+	Splice_Site	DEL	TGGTGGAGG	TGGTGGAGG	-	rs72422400	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	TGGTGGAGG	TGGTGGAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	1768998	1769006	TGGTGGAGG	-	DEL	LOC100131251	XM_001719038.1	human	genbank	58_37c	-1	model	splice_site_del	c.603+2_603+1	e3+2	0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors
LOC440563	440563	genome.wustl.edu	37	1	13183591	13183591	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	13183591	13183591	G	A	SNP	LOC440563	NM_001136561.2	human	genbank	58_37c	-1	validated	silent	c.282	p.N94	0.879	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
MAGI1	9223	genome.wustl.edu	37	3	65346921	65346921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	65346921	65346921	C	T	SNP	MAGI1	NM_001033057.1	human	genbank	58_37c	-1	reviewed	missense	c.3587	p.R1196K	1.000	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MAZ	4150	genome.wustl.edu	37	16	29821425	29821425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	16	29821425	29821425	C	T	SNP	MAZ	NM_002383.2	human	genbank	58_37c	+1	validated	missense	c.1307	p.A436V	0.930	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
MBD1	4152	genome.wustl.edu	37	18	47802228	47802228	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	18	47802228	47802228	G	A	SNP	MBD1	NM_015846.3	human	genbank	58_37c	-1	reviewed	missense	c.640	p.R214C	1.000	HMMPfam_zf-CXXC	HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_zf-CXXC,superfamily_DNA-binding domain	-	no_errors
MLLT10	8028	genome.wustl.edu	37	10	21827779	21827779	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	10	21827779	21827779	C	T	SNP	MLLT10	NM_004641.2	human	genbank	58_37c	+1	validated	nonsense	c.178	p.Q60*	1.000	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
MYH10	4628	genome.wustl.edu	37	17	8415888	8415888	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	17	8415888	8415888	C	G	SNP	MYH10	NM_005964.1	human	genbank	58_37c	-1	validated	missense	c.2740	p.A914P	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Myosin S1 fragment N-terminal domain,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYH8	4626	genome.wustl.edu	37	17	10304870	10304870	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	17	10304870	10304870	G	C	SNP	MYH8	NM_002472.2	human	genbank	58_37c	-1	reviewed	missense	c.2921	p.T974R	1.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NAALADL2	254827	genome.wustl.edu	37	3	175189546	175189546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	175189546	175189546	G	T	SNP	NAALADL2	NM_207015.2	human	genbank	58_37c	+1	validated	missense	c.1653	p.E551D	1.000	superfamily_Zn-dependent exopeptidases	superfamily_Transferrin receptor ectodomain C-terminal domain,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases	-	no_errors
NFATC4	4776	genome.wustl.edu	37	14	24845738	24845738	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	14	24845738	24845738	C	-	DEL	NFATC4	NM_001136022.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2484	p.P829fs	1.000	NULL	HMMPfam_TIG,HMMSmart_IPT,superfamily_P53_like_DNA_bnd,HMMPfam_RHD,superfamily_Ig_E-set	-	no_errors
NUP155	9631	genome.wustl.edu	37	5	37349297	37349298	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	26163687-7ede-43be-aeb7-21ad33133d45	5	37349297	37349298	GT	-	DEL	NUP155	NM_153485.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.880_879	p.R294fs	1.000:0.972	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	-	no_errors
OR51E2	81285	genome.wustl.edu	37	11	4703745	4703745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	11	4703745	4703745	G	C	SNP	OR51E2	NM_030774.3	human	genbank	58_37c	-1	validated	missense	c.197	p.A66G	0.998	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3R3	8503	genome.wustl.edu	37	1	46512262	46512262	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	46512262	46512262	A	C	SNP	PIK3R3	NM_001114172.1	human	genbank	58_37c	-1	validated	missense	c.977	p.L326R	1.000	NULL	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	-	no_errors
PIWIL2	55124	genome.wustl.edu	37	8	22146119	22146120	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	8	22146119	22146120	-	A	INS	PIWIL2	NM_001135721.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.926_927	p.I311fs	1.000:0.988	superfamily_PAZ domain	HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like,superfamily_PAZ domain	-	no_errors
SEZ6L2	26470	genome.wustl.edu	37	16	29884037	29884037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	16	29884037	29884037	C	T	SNP	SEZ6L2	NM_012410.2	human	genbank	58_37c	-1	validated	missense	c.2306	p.R769Q	1.000	NULL	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,superfamily_Complement_control_module	-	no_errors
SLC16A1	6566	genome.wustl.edu	37	1	113456766	113456766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	1	113456766	113456766	C	T	SNP	SLC16A1	NM_003051.3	human	genbank	58_37c	-1	reviewed	missense	c.1250	p.G417E	1.000	superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SSX3	10214	genome.wustl.edu	37	X	48214616	48214616	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	X	48214616	48214616	C	A	SNP	SSX3	NM_021014.2	human	genbank	58_37c	-1	reviewed	missense	c.69	p.K23N	0.036	HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_SSXRD	-	no_errors
TIMP3	7078	genome.wustl.edu	37	22	33245467	33245467	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	22	33245467	33245467	G	A	SNP	TIMP3	NM_000362.4	human	genbank	58_37c	+1	reviewed	silent	c.150	p.K50	1.000	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like	HMMPfam_TIMP,HMMSmart_SM00206,PatternScan_TIMP,superfamily_TIMP-like	-	no_errors
TRAK1	22906	genome.wustl.edu	37	3	42230525	42230525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	3	42230525	42230525	C	T	SNP	TRAK1	NM_001042646.1	human	genbank	58_37c	+1	validated	missense	c.599	p.S200L	0.993	HMMPfam_HAP1_N	HMMPfam_HAP1_N,PatternScan_HEMOPEXIN	-	no_errors
TRIP10	9322	genome.wustl.edu	37	19	6751237	6751237	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	6751237	6751237	G	A	SNP	TRIP10	ENST00000420690	human	ensembl	58_37c	+1	known	missense	c.1682	p.R561Q	0.078	NULL	HMMPfam_FCH,HMMSmart_FCH	-	no_errors
ZNF675	171392	genome.wustl.edu	37	19	23837311	23837311	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	19	23837311	23837311	T	A	SNP	ZNF675	NM_138330.2	human	genbank	58_37c	-1	validated	nonsense	c.424	p.K142*	0.319	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZSCAN2	54993	genome.wustl.edu	37	15	85164438	85164438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f39cc911-36a7-4c06-9e91-4ad86281db3d	6c7d0beb-a20c-4cf8-8e52-2028a8620bb5	15	85164438	85164438	G	A	SNP	ZSCAN2	NM_181877.3	human	genbank	58_37c	+1	reviewed	missense	c.1012	p.E338K	0.726	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
