Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ATM	0	genome.wustl.edu	37	11	108214019	108214019	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	11	108214019	108214019	T	G	SNP	ATM	NM_000051.3	human	genbank	58_37c	+1	reviewed	missense	c.8339	p.L2780R	1.000	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
C15orf2	0	genome.wustl.edu	37	15	24922753	24922753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	15	24922753	24922753	C	T	SNP	C15orf2	NM_018958.2	human	genbank	58_37c	+1	reviewed	missense	c.1739	p.T580I	0.015	NULL	NULL	-	no_errors
CCND3	0	genome.wustl.edu	37	6	41903724	41903724	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	41903724	41903724	G	C	SNP	CCND3	NM_001760.3	human	genbank	58_37c	-1	reviewed	missense	c.833	p.P278R	1.000	HMMPfam_Cyclin_C	HMMPfam_Cyclin_C,HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
CD59	0	genome.wustl.edu	37	11	33731840	33731840	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	11	33731840	33731840	G	A	SNP	CD59	NM_000611.5	human	genbank	58_37c	-1	reviewed	silent	c.219	p.N73	0.000	HMMPfam_UPAR_LY6,HMMSmart_SM00134,superfamily_Snake toxin-like	HMMPfam_UPAR_LY6,HMMSmart_SM00134,PatternScan_LY6_UPAR,superfamily_Snake toxin-like	-	no_errors
CTTNBP2NL	0	genome.wustl.edu	37	1	112998889	112998889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	112998889	112998889	C	T	SNP	CTTNBP2NL	NM_018704.2	human	genbank	58_37c	+1	validated	missense	c.775	p.R259W	1.000	HMMPfam_CortBP2	HMMPfam_CortBP2	-	no_errors
DCBLD2	0	genome.wustl.edu	37	3	98538119	98538119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	3	98538119	98538119	C	T	SNP	DCBLD2	ENST00000404023	human	ensembl	58_37c	-1	known	missense	c.871	p.A291T	0.991	superfamily_Galactose-binding domain-like	HMMPfam_F5_F8_type_C,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain,superfamily_Galactose-binding domain-like	-	no_stop_codon
DENND4B	0	genome.wustl.edu	37	1	153907279	153907287	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	CTGCTGCTG	CTGCTGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	153907279	153907287	CTGCTGCTG	-	DEL	DENND4B	NM_014856.2	human	genbank	58_37c	-1	validated	in_frame_del	c.2730_2722	p.QQQ908in_frame_del	0.792:0.815:0.846:0.964:0.974:0.990:0.990:0.986:0.989	NULL	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
DOCK5	0	genome.wustl.edu	37	8	25189823	25189823	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	8	25189823	25189823	C	A	SNP	DOCK5	NM_024940.6	human	genbank	58_37c	+1	validated	missense	c.1960	p.L654I	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
EIF3I	0	genome.wustl.edu	37	1	32694376	32694376	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	32694376	32694376	C	T	SNP	EIF3I	NM_003757.2	human	genbank	58_37c	+1	validated	missense	c.688	p.R230C	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000196987	0	genome.wustl.edu	37	X	153149667	153149667	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	X	153149667	153149667	G	T	SNP	ENSG00000196987	ENST00000452593	human	ensembl	58_37c	+1	known	missense	c.498	p.E166D	0.001	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ENSG00000210140	0	genome.wustl.edu	37	MT	5821	5821	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	MT	5821	5821	G	A	SNP	ENSG00000210140	ENST00000387405	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
FAM75C1	0	genome.wustl.edu	37	9	90535249	90535249	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	9	90535249	90535249	C	A	SNP	FAM75C1	NM_001145124.1	human	genbank	58_37c	+1	validated	missense	c.427	p.P143T	0.001	NULL	NULL	-	no_errors
FBXL18	0	genome.wustl.edu	37	7	5545048	5545048	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	7	5545048	5545048	A	C	SNP	FBXL18	NM_024963.4	human	genbank	58_37c	-1	validated	missense	c.232	p.Y78D	1.000	superfamily_SSF52047	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047,superfamily_SSF81383	-	no_errors
HIST1H3B	0	genome.wustl.edu	37	6	26032045	26032045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	26032045	26032045	C	T	SNP	HIST1H3B	NM_003537.3	human	genbank	58_37c	-1	reviewed	missense	c.244	p.D82N	1.000	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HNF4A	0	genome.wustl.edu	37	20	43052731	43052731	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	20	43052731	43052731	C	T	SNP	HNF4A	NM_000457.3	human	genbank	58_37c	+1	reviewed	silent	c.966	p.Y322	1.000	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
IGHV4-28	0	genome.wustl.edu	37	14	106780709	106780710	+	In_Frame_Ins	INS	-	-	AAC	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	14	106780709	106780710	-	AAC	INS	IGHV4-28	ENST00000390612	human	ensembl	58_37c	-1	known	in_frame_ins	c.155_154	p.N52in_frame_insSY	0.034:0.012	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726	-	no_stop_codon
KIAA2018	0	genome.wustl.edu	37	3	113376111	113376113	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	3	113376111	113376113	TGC	-	DEL	KIAA2018	NM_001009899.2	human	genbank	58_37c	-1	validated	in_frame_del	c.4418_4416	p.Q1476in_frame_del	0.994:1.000:1.000	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
KRTAP17-1	0	genome.wustl.edu	37	17	39471753	39471767	+	In_Frame_Del	DEL	GCCCCCGCAGCCAGA	GCCCCCGCAGCCAGA	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	GCCCCCGCAGCCAGA	GCCCCCGCAGCCAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	17	39471753	39471767	GCCCCCGCAGCCAGA	-	DEL	KRTAP17-1	NM_031964.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.150_136	p.GCGGS47in_frame_del	0.000:0.002:0.001:0.000:0.137:0.140:0.140:0.265:0.265:0.248:0.247:0.130:0.000:0.000:0.001	NULL	NULL	-	no_errors
LOC100289574	0	genome.wustl.edu	37	16	32190787	32190787	+	Missense_Mutation	SNP	T	T	C	rs62042697	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	16	32190787	32190787	T	C	SNP	LOC100289574	XM_002343438.1	human	genbank	58_37c	-1	model	missense	c.395	p.Q132R	0.879	NULL	NULL	-	no_errors
LOC401218	0	genome.wustl.edu	37	5	172189802	172189802	+	RNA	SNP	T	T	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	5	172189802	172189802	T	A	SNP	LOC401218	XR_042344.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.774	-	-	-	pseudogene
LOC440243	0	genome.wustl.edu	37	15	23579246	23579246	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	15	23579246	23579246	G	C	SNP	LOC440243	XM_496041.4	human	genbank	58_37c	-1	model	missense	c.298	p.L100V	0.191	NULL	NULL	-	no_errors
LOC441666	0	genome.wustl.edu	37	10	42833133	42833135	+	RNA	DEL	ATT	ATT	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	10	42833133	42833135	ATT	-	DEL	LOC441666	NR_024380.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.966:0.250:0.047	-	-	-	pseudogene
LOC642587	0	genome.wustl.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	1	209605637	209605648	AGCAGCAGCAGC	-	DEL	LOC642587	NM_001104548.1	human	genbank	58_37c	+1	validated	in_frame_del	c.252_263	p.AAAA88in_frame_del	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
LOC646214	0	genome.wustl.edu	37	15	21936732	21936732	+	RNA	SNP	G	G	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	15	21936732	21936732	G	T	SNP	LOC646214	NR_027053.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC647013	0	genome.wustl.edu	37	9	37477231	37477231	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	9	37477231	37477231	C	T	SNP	LOC647013	XM_001726034.2	human	genbank	58_37c	+1	model	missense	c.86	p.S29F	1.000	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain	-	no_errors
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MED15	0	genome.wustl.edu	37	22	20920813	20920814	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	22	20920813	20920814	-	CAG	INS	MED15	NM_001003891.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.750_751	p.254in_frame_insQ	0.993:0.998	NULL	HMMPfam_ARC105_Med_act	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	CAGCAG	CAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1239	p.QQ415in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MICAL1	0	genome.wustl.edu	37	6	109766645	109766645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	6	109766645	109766645	C	T	SNP	MICAL1	NM_022765.3	human	genbank	58_37c	-1	validated	missense	c.2761	p.E921K	0.992	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,superfamily_FAD/NAD(P)-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
MSLNL	0	genome.wustl.edu	37	16	832874	832874	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	16	832874	832874	C	T	SNP	MSLNL	NM_001025190.1	human	genbank	58_37c	-1	provisional	missense	c.53	p.R18Q	0.000	NULL	HMMPfam_Mesothelin	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9058547	9058547	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	9058547	9058547	C	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.28899	p.Q9633H	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506940	195506940	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	3	195506940	195506940	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11127	p.H3709Q	0.197	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
OR10P1	0	genome.wustl.edu	37	12	56031321	56031321	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	12	56031321	56031321	G	T	SNP	OR10P1	NM_206899.1	human	genbank	58_37c	+1	provisional	missense	c.646	p.V216F	0.001	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCSK5	0	genome.wustl.edu	37	9	78799604	78799604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	9	78799604	78799604	G	A	SNP	PCSK5	NM_006200.3	human	genbank	58_37c	+1	reviewed	missense	c.2213	p.R738Q	1.000	HMMSmart_SM00261,superfamily_Growth factor receptor domain	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Subtilisin-like,HMMPfam_P_proprotein,HMMSmart_SM00261,superfamily_Galactose-binding domain-like,superfamily_Protease propeptides/inhibitors,superfamily_Growth factor receptor domain,HMMPfam_PLAC	-	no_errors
POM121L10P	0	genome.wustl.edu	37	22	25043061	25043062	+	RNA	INS	-	-	CCGG	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	22	25043061	25043062	-	CCGG	INS	POM121L10P	NR_024593.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
PVRL1	0	genome.wustl.edu	37	11	119535677	119535678	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	11	119535677	119535678	-	CCT	INS	PVRL1	NM_002855.4	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1334_1333	p.445in_frame_insE	0.902:0.989	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
RBM23	0	genome.wustl.edu	37	14	23371255	23371256	+	In_Frame_Ins	INS	-	-	GGC	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	14	23371255	23371256	-	GGC	INS	RBM23	NM_001077351.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1180_1179	p.393in_frame_insA	0.736:0.712	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
SELPLG	0	genome.wustl.edu	37	12	109017677	109017678	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	12	109017677	109017678	-	CCA	INS	SELPLG	ENST00000228463	human	ensembl	58_37c	-1	known	in_frame_ins	c.407_406	p.P136in_frame_insLA	0.004:0.003	NULL	NULL	-	no_errors
TTN	0	genome.wustl.edu	37	2	179444052	179444052	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	2	179444052	179444052	G	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.59995	p.R19999W	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	0	genome.wustl.edu	37	2	179479294	179479294	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	2	179479294	179479294	A	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.41243	p.V13748A	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
ZCCHC12	0	genome.wustl.edu	37	X	117960036	117960036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	X	117960036	117960036	G	A	SNP	ZCCHC12	NM_173798.2	human	genbank	58_37c	+1	provisional	missense	c.829	p.V277M	0.999	NULL	NULL	-	no_errors
ZNF175	0	genome.wustl.edu	37	19	52091101	52091101	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	19	52091101	52091101	G	A	SNP	ZNF175	NM_007147.2	human	genbank	58_37c	+1	validated	missense	c.1517	p.S506N	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF384	0	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	novel	unknown	TCGA-E2-A1IE-01A-11D-A188-09	TCGA-E2-A1IE-10A-01D-A13O-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e416f05b-c7d2-479b-8068-803492e86d86	6ac63f27-8c8b-4ec4-bc06-710c5fe59fcb	12	6777070	6777072	TGC	-	DEL	ZNF384	NM_001135734.1	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1544_1542	p.Q516in_frame_del	0.291:0.350:0.379	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
