Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB4	0	genome.wustl.edu	37	7	87069137	87069137	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	87069137	87069137	A	C	SNP	ABCB4	NM_018849.2	human	genbank	58_37c	-1	reviewed	missense	c.1577	p.V526G	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACAA2	0	genome.wustl.edu	37	18	47311649	47311649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	47311649	47311649	C	T	SNP	ACAA2	NM_006111.2	human	genbank	58_37c	-1	reviewed	missense	c.1027	p.V343M	1.000	HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,superfamily_Thiolase-like	HMMPfam_Thiolase_N,HMMPfam_Thiolase_C,PatternScan_THIOLASE_1,PatternScan_THIOLASE_3,PatternScan_THIOLASE_2,superfamily_Thiolase-like	-	no_errors
ADCK2	0	genome.wustl.edu	37	7	140389402	140389402	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	140389402	140389402	G	C	SNP	ADCK2	NM_052853.3	human	genbank	58_37c	+1	validated	missense	c.1563	p.Q521H	0.607	NULL	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)	-	no_errors
ANKRD12	0	genome.wustl.edu	37	18	9257247	9257247	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	9257247	9257247	G	T	SNP	ANKRD12	NM_015208.3	human	genbank	58_37c	+1	validated	nonsense	c.3982	p.E1328*	1.000	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ARHGEF11	0	genome.wustl.edu	37	1	156915883	156915883	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	156915883	156915883	G	A	SNP	ARHGEF11	NM_198236.1	human	genbank	58_37c	-1	reviewed	silent	c.2766	p.L922	0.998	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729	-	no_errors
ASXL3	0	genome.wustl.edu	37	18	31325407	31325407	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	31325407	31325407	C	T	SNP	ASXL3	NM_030632.1	human	genbank	58_37c	+1	provisional	silent	c.5595	p.I1865	0.417	NULL	NULL	-	no_errors
BBX	0	genome.wustl.edu	37	3	107451818	107451818	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	107451818	107451818	G	C	SNP	BBX	NM_001142568.1	human	genbank	58_37c	+1	validated	missense	c.617	p.G206A	1.000	HMMPfam_DUF2028	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_DUF2028	-	no_errors
BCL6B	0	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	6928019	6928020	-	CAG	INS	BCL6B	NM_181844.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.701_702	p.238in_frame_insS	0.939:0.528	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BCORL1	0	genome.wustl.edu	37	X	129149215	129149215	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	129149215	129149215	C	G	SNP	BCORL1	NM_021946.3	human	genbank	58_37c	+1	reviewed	missense	c.2467	p.P823A	1.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
BIRC3	0	genome.wustl.edu	37	11	102206908	102206909	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	102206908	102206909	CT	-	DEL	BIRC3	NM_001165.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1536_1537	p.L514fs	0.997:0.997	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like,superfamily_SSF57924	HMMPfam_CARD,HMMSmart_CARD,HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,HMMSmart_RING,superfamily_DEATH_like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57924	-	no_errors
BMP1	0	genome.wustl.edu	37	8	22052371	22052371	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	8	22052371	22052371	G	A	SNP	BMP1	NM_006129.4	human	genbank	58_37c	+1	reviewed	nonsense	c.1578	p.W526*	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	"PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Astacin,HMMSmart_SM00179,PatternScan_ZINC_PROTEASE,HMMSmart_SM00235,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_EGF/Laminin"	-	no_errors
BMPR2	0	genome.wustl.edu	37	2	203420345	203420345	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	203420345	203420345	C	G	SNP	BMPR2	NM_001204.6	human	genbank	58_37c	+1	reviewed	missense	c.1957	p.P653A	1.000	NULL	HMMPfam_Activin_recp,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF57302	-	no_errors
BRD4	0	genome.wustl.edu	37	19	15350784	15350784	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	15350784	15350784	C	G	SNP	BRD4	NM_058243.2	human	genbank	58_37c	-1	reviewed	missense	c.3219	p.M1073I	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
C11orf40	0	genome.wustl.edu	37	11	4592708	4592709	+	Frame_Shift_Ins	INS	-	-	AG	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	4592708	4592709	-	AG	INS	C11orf40	NM_144663.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.599_598	p.C200fs	0.001:0.002	NULL	NULL	-	no_errors
CACNA2D1	0	genome.wustl.edu	37	7	81714138	81714138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	81714138	81714138	G	A	SNP	CACNA2D1	NM_000722.2	human	genbank	58_37c	-1	reviewed	missense	c.605	p.S202L	0.631	HMMPfam_VWA_N	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Cache_1,HMMPfam_VWA_N,HMMPfam_VGCC_alpha2,superfamily_SSF53300	-	no_errors
CACNB2	0	genome.wustl.edu	37	10	18807853	18807859	+	Frame_Shift_Del	DEL	GCAAAAA	GCAAAAA	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	GCAAAAA	GCAAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	18807853	18807859	GCAAAAA	-	DEL	CACNB2	NM_201596.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.900_906	p.Q301fs	1.000:1.000:1.000:0.922:1.000:1.000:1.000	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Ca_channel_B,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CCDC130	0	genome.wustl.edu	37	19	13870017	13870017	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	13870017	13870017	C	T	SNP	CCDC130	NM_030818.2	human	genbank	58_37c	+1	provisional	silent	c.504	p.H168	1.000	HMMPfam_DUF572	HMMPfam_DUF572	-	no_errors
CCDC94	0	genome.wustl.edu	37	19	4254420	4254420	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	4254420	4254420	C	T	SNP	CCDC94	NM_018074.4	human	genbank	58_37c	+1	provisional	silent	c.339	p.L113	0.997	HMMPfam_DUF572	HMMPfam_DUF572	-	no_errors
CCNH	0	genome.wustl.edu	37	5	86703897	86703897	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	86703897	86703897	C	G	SNP	CCNH	NM_001239.2	human	genbank	58_37c	-1	reviewed	missense	c.421	p.E141Q	1.000	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
CDC40	0	genome.wustl.edu	37	6	110531945	110531945	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	110531945	110531945	G	C	SNP	CDC40	NM_015891.2	human	genbank	58_37c	+1	reviewed	missense	c.666	p.K222N	1.000	NULL	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CDRT1	0	genome.wustl.edu	37	17	15522583	15522583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	15522583	15522583	C	T	SNP	CDRT1	NM_006382.3	human	genbank	58_37c	-1	provisional	missense	c.244	p.G82R	0.916	NULL	HMMSmart_SM00320,HMMPfam_F-box,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_F-box domain	-	no_errors
CHRM2	0	genome.wustl.edu	37	7	136699784	136699784	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	136699784	136699784	A	T	SNP	CHRM2	NM_000739.2	human	genbank	58_37c	+1	reviewed	missense	c.172	p.N58Y	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CHRNA4	0	genome.wustl.edu	37	20	61982113	61982113	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	61982113	61982113	G	C	SNP	CHRNA4	NM_000744.5	human	genbank	58_37c	-1	reviewed	missense	c.650	p.T217S	1.000	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
CLPTM1	0	genome.wustl.edu	37	19	45494525	45494525	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	45494525	45494525	C	G	SNP	CLPTM1	NM_001294.1	human	genbank	58_37c	+1	provisional	silent	c.1449	p.L483	1.000	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors
CNTN6	0	genome.wustl.edu	37	3	1444013	1444013	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	1444013	1444013	G	A	SNP	CNTN6	NM_014461.2	human	genbank	58_37c	+1	reviewed	silent	c.2829	p.R943	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
COL7A1	0	genome.wustl.edu	37	3	48613091	48613091	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	48613091	48613091	C	A	SNP	COL7A1	NM_000094.3	human	genbank	58_37c	-1	reviewed	missense	c.5947	p.D1983Y	0.989	HMMPfam_Collagen	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
CREB3L3	0	genome.wustl.edu	37	19	4157065	4157065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	4157065	4157065	C	T	SNP	CREB3L3	NM_032607.1	human	genbank	58_37c	+1	provisional	missense	c.230	p.S77F	1.000	NULL	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1	-	no_errors
CYP8B1	0	genome.wustl.edu	37	3	42917067	42917067	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	42917067	42917067	A	C	SNP	CYP8B1	NM_004391.2	human	genbank	58_37c	-1	reviewed	missense	c.242	p.M81R	1.000	superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450	-	no_errors
DIDO1	0	genome.wustl.edu	37	20	61522371	61522371	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	61522371	61522371	A	C	SNP	DIDO1	NM_033081.1	human	genbank	58_37c	-1	reviewed	missense	c.3482	p.L1161R	1.000	HMMPfam_SPOC	HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
DNAH10	0	genome.wustl.edu	37	12	124281372	124281372	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	124281372	124281372	G	T	SNP	DNAH10	NM_207437.3	human	genbank	58_37c	+1	validated	missense	c.1802	p.G601V	0.994	HMMPfam_DHC_N1	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH11	0	genome.wustl.edu	37	7	21603876	21603876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	21603876	21603876	C	T	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	missense	c.1055	p.T352M	0.086	HMMPfam_DHC_N1	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAI2	0	genome.wustl.edu	37	17	72308231	72308231	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	72308231	72308231	G	A	SNP	DNAI2	NM_023036.4	human	genbank	58_37c	+1	reviewed	silent	c.1584	p.R528	0.372	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
DNTTIP1	0	genome.wustl.edu	37	20	44429777	44429777	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	44429777	44429777	T	A	SNP	DNTTIP1	NM_052951.2	human	genbank	58_37c	+1	validated	missense	c.437	p.I146K	1.000	NULL	NULL	-	no_errors
DOCK4	0	genome.wustl.edu	37	7	111395657	111395657	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	111395657	111395657	T	A	SNP	DOCK4	NM_014705.3	human	genbank	58_37c	-1	reviewed	missense	c.4303	p.S1435C	1.000	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
ELF2	0	genome.wustl.edu	37	4	139980675	139980675	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	4	139980675	139980675	G	A	SNP	ELF2	NM_201999.1	human	genbank	58_37c	-1	validated	missense	c.1208	p.A403V	1.000	NULL	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors
ENSG00000198886	0	genome.wustl.edu	37	MT	10946	10947	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	MT	10946	10947	-	C	INS	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	frame_shift_ins	c.187_188	p.L65fs	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000219061	0	genome.wustl.edu	37	11	49855063	49855063	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	49855063	49855063	G	T	SNP	ENSG00000219061	ENST00000405176	human	ensembl	58_37c	-1	known	missense	c.991	p.L331I	0.028	NULL	PatternScan_SERPIN,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
ENSG00000230416	0	genome.wustl.edu	37	11	56216401	56216402	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	56216401	56216402	-	A	INS	ENSG00000230416	ENST00000415874	human	ensembl	58_37c	+1	known	frame_shift_ins	c.258_259	p.T88fs	0.000:0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_stop_codon
ENSG00000235345	0	genome.wustl.edu	37	7	27186870	27186870	+	RNA	SNP	T	T	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	27186870	27186870	T	C	SNP	ENSG00000235345	ENST00000480355	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.993	-	-	-	no_errors
ENSG00000248675	0	genome.wustl.edu	37	7	10492331	10492331	+	RNA	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	10492331	10492331	C	A	SNP	ENSG00000248675	ENST00000510654	human	ensembl	58_37c	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
EPHX3	0	genome.wustl.edu	37	19	15342092	15342092	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	15342092	15342092	C	G	SNP	EPHX3	NM_001142886.1	human	genbank	58_37c	-1	validated	missense	c.445	p.D149H	0.156	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	-	no_errors
ERMAP	0	genome.wustl.edu	37	1	43296767	43296767	+	Silent	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	43296767	43296767	C	A	SNP	ERMAP	NM_001017922.1	human	genbank	58_37c	+1	reviewed	silent	c.414	p.T138	0.356	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IG,HMMPfam_SPRY,HMMSmart_PRY,HMMPfam_V-set,HMMSmart_SPRY,superfamily_SSF48726	-	no_errors
FAM100B	0	genome.wustl.edu	37	17	74262032	74262034	+	In_Frame_Del	DEL	CCA	CCA	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	CCA	CCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	74262032	74262034	CCA	-	DEL	FAM100B	NM_182565.3	human	genbank	58_37c	+1	validated	in_frame_del	c.165_167	p.H59in_frame_del	0.998:1.000:1.000	NULL	superfamily_UBA_like	-	no_errors
FAM131B	0	genome.wustl.edu	37	7	143055977	143055977	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	143055977	143055977	C	G	SNP	FAM131B	NM_001031690.2	human	genbank	58_37c	-1	validated	missense	c.409	p.D137H	1.000	NULL	NULL	-	no_errors
FAM21C	0	genome.wustl.edu	37	10	46252586	46252586	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	46252586	46252586	A	G	SNP	FAM21C	NM_015262.2	human	genbank	58_37c	+1	validated	missense	c.1547	p.K516R	0.317	NULL	NULL	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40402300	40402300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	40402300	40402300	G	A	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	missense	c.5099	p.A1700V	0.408	HMMPfam_VWD,HMMSmart_VWD	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
G3BP1	0	genome.wustl.edu	37	5	151179507	151179507	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	151179507	151179507	C	G	SNP	G3BP1	NM_005754.2	human	genbank	58_37c	+1	reviewed	missense	c.901	p.Q301E	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_NTF2,superfamily_NTF2-like,superfamily_RNA-binding domain RBD	-	no_errors
GALNT3	0	genome.wustl.edu	37	2	166611525	166611525	+	Nonsense_Mutation	SNP	G	G	A	rs137853089	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	166611525	166611525	G	A	SNP	GALNT3	NM_004482.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1441	p.Q481*	1.000	superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GLP2R	0	genome.wustl.edu	37	17	9764490	9764490	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	9764490	9764490	C	T	SNP	GLP2R	ENST00000458005	human	ensembl	58_37c	+1	known	missense	c.518	p.S173L	0.000	HMMPfam_7tm_2	HMMPfam_7tm_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GPATCH1	0	genome.wustl.edu	37	19	33602732	33602732	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	33602732	33602732	C	A	SNP	GPATCH1	NM_018025.2	human	genbank	58_37c	+1	provisional	nonsense	c.1688	p.S563*	0.964	NULL	HMMPfam_G-patch,HMMSmart_G_patch,HMMPfam_DUF1604	-	no_errors
GRHL1	0	genome.wustl.edu	37	2	10126310	10126310	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	10126310	10126310	G	A	SNP	GRHL1	NM_198182.2	human	genbank	58_37c	+1	reviewed	missense	c.602	p.G201E	1.000	HMMPfam_CP2	HMMPfam_CP2	-	no_errors
GUCY1A3	0	genome.wustl.edu	37	4	156634276	156634276	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	4	156634276	156634276	C	G	SNP	GUCY1A3	NM_000856.4	human	genbank	58_37c	+1	validated	missense	c.1113	p.I371M	1.000	HMMPfam_HNOBA	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_HNOBA,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
HIST1H2BK	0	genome.wustl.edu	37	6	27114571	27114571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	27114571	27114571	C	T	SNP	HIST1H2BK	NM_080593.1	human	genbank	58_37c	-1	reviewed	missense	c.7	p.E3K	0.998	NULL	HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HOMER2	0	genome.wustl.edu	37	15	83523419	83523419	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	83523419	83523419	C	T	SNP	HOMER2	NM_199330.1	human	genbank	58_37c	-1	reviewed	missense	c.661	p.E221K	0.998	NULL	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like	-	no_errors
HOXC6	0	genome.wustl.edu	37	12	54422706	54422709	+	Frame_Shift_Del	DEL	GTGA	GTGA	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	GTGA	GTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	54422706	54422709	GTGA	-	DEL	HOXC6	ENST00000504315	human	ensembl	58_37c	+1	known	frame_shift_del	c.155	p.G52fs	1.000	NULL	PatternScan_ANTENNAPEDIA	-	no_stop_codon:bad_bp_length_for_coding_region
HSP90AB1	0	genome.wustl.edu	37	6	44219554	44219554	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	44219554	44219554	G	A	SNP	HSP90AB1	ENST00000435812	human	ensembl	58_37c	+1	known	missense	c.272	p.R91K	1.000	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ICK	0	genome.wustl.edu	37	6	52876589	52876589	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	52876589	52876589	C	T	SNP	ICK	NM_014920.3	human	genbank	58_37c	-1	reviewed	silent	c.1470	p.L490	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
IL28B	0	genome.wustl.edu	37	19	39734335	39734335	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	39734335	39734335	G	A	SNP	IL28B	NM_172139.2	human	genbank	58_37c	-1	reviewed	silent	c.528	p.F176	0.997	NULL	NULL	-	no_errors
ILF3	0	genome.wustl.edu	37	19	10795141	10795141	+	Nonstop_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	10795141	10795141	G	C	SNP	ILF3	NM_001137673.1	human	genbank	58_37c	+1	reviewed	nonstop	c.2121	p.*707Y	1.000	NULL	HMMPfam_dsrm,HMMSmart_DSRM,HMMPfam_DZF,HMMSmart_DZF,superfamily_SSF54768	-	no_errors
IQGAP2	0	genome.wustl.edu	37	5	75969810	75969810	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	75969810	75969810	G	A	SNP	IQGAP2	NM_006633.2	human	genbank	58_37c	+1	validated	silent	c.3243	p.K1081	1.000	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RasGAP_C,PatternScan_WW_DOMAIN_1,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KCND3	0	genome.wustl.edu	37	1	112329593	112329593	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	112329593	112329593	C	G	SNP	KCND3	NM_004980.3	human	genbank	58_37c	-1	reviewed	missense	c.1242	p.Q414H	1.000	superfamily_Voltage-gated potassium channels	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KCTD19	0	genome.wustl.edu	37	16	67325347	67325347	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	16	67325347	67325347	G	C	SNP	KCTD19	NM_001100915.1	human	genbank	58_37c	-1	provisional	missense	c.2430	p.F810L	1.000	NULL	HMMPfam_K_tetra,superfamily_BTB/POZ_fold	-	no_errors
KDM2A	0	genome.wustl.edu	37	11	66999259	66999259	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	66999259	66999259	G	A	SNP	KDM2A	NM_012308.2	human	genbank	58_37c	+1	reviewed	missense	c.1307	p.G436E	1.000	NULL	HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,PatternScan_2FE2S_FER_1,HMMSmart_SM00367,HMMPfam_JmjC,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,superfamily_RNI-like	-	no_errors
KIAA1324	0	genome.wustl.edu	37	1	109743374	109743374	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	109743374	109743374	C	G	SNP	KIAA1324	NM_020775.3	human	genbank	58_37c	+1	validated	missense	c.2825	p.S942C	1.000	NULL	superfamily_Mannose 6-phosphate receptor domain,superfamily_Growth factor receptor domain	-	no_errors
KIAA2018	0	genome.wustl.edu	37	3	113379916	113379916	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	113379916	113379916	C	G	SNP	KIAA2018	NM_001009899.2	human	genbank	58_37c	-1	validated	missense	c.613	p.E205Q	1.000	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
LDHC	0	genome.wustl.edu	37	11	18434280	18434280	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	18434280	18434280	G	C	SNP	LDHC	NM_002301.4	human	genbank	58_37c	+1	reviewed	missense	c.16	p.E6Q	1.000	superfamily_NAD(P)-bd	HMMPfam_Ldh_1_N,HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C,superfamily_NAD(P)-bd,PatternScan_L_LDH	-	no_errors
LIG1	0	genome.wustl.edu	37	19	48653045	48653045	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	48653045	48653045	G	C	SNP	LIG1	NM_000234.1	human	genbank	58_37c	-1	reviewed	missense	c.751	p.P251A	0.000	NULL	HMMPfam_DNA_ligase_A_N,HMMPfam_DNA_ligase_A_C,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A2,PatternScan_DNA_LIGASE_A1,superfamily_DNA ligase/mRNA capping enzyme catalytic domain	-	no_errors
LILRA4	0	genome.wustl.edu	37	19	54848304	54848304	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	54848304	54848304	G	A	SNP	LILRA4	NM_012276.3	human	genbank	58_37c	-1	reviewed	silent	c.1063	p.L355	0.154	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC100130238	0	genome.wustl.edu	37	12	132855566	132855575	+	RNA	DEL	CCCAGCCCAT	-	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	CCCAGCCCAT	CCCAGCCCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	132855566	132855575	CCCAGCCCAT	-	DEL	LOC100130238	NR_024563.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.008:0.009:0.008:0.006:0.009:0.017:0.022:0.026:0.035:0.044	-	-	-	no_errors
LOC100287284	0	genome.wustl.edu	37	12	27916222	27916222	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	27916222	27916222	C	T	SNP	LOC100287284	XM_002343149.1	human	genbank	58_37c	-1	model	missense	c.592	p.D198N	0.010	NULL	HMMSmart_SM00765	-	no_errors
LOC100288941	0	genome.wustl.edu	37	2	220283541	220283541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	220283541	220283541	C	T	SNP	LOC100288941	XM_002342291.1	human	genbank	58_37c	-1	model	missense	c.448	p.E150K	1.000	NULL	NULL	-	no_errors
LOC339881	0	genome.wustl.edu	37	3	122380538	122380538	+	RNA	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	122380538	122380538	G	C	SNP	LOC339881	XR_078291.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC400804	0	genome.wustl.edu	37	1	221509249	221509249	+	RNA	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	221509249	221509249	G	C	SNP	LOC400804	NR_024236.1	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC440233	0	genome.wustl.edu	37	15	23407440	23407440	+	RNA	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	23407440	23407440	C	A	SNP	LOC440233	XR_037636.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC440896	0	genome.wustl.edu	37	9	69177508	69177508	+	RNA	SNP	G	C	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	9	69177508	69177508	G	C	SNP	LOC440896	NR_015361.1	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.083	-	-	-	no_errors
LOC644063	0	genome.wustl.edu	37	3	96069002	96069002	+	RNA	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	96069002	96069002	G	T	SNP	LOC644063	XR_016547.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC728888	0	genome.wustl.edu	37	16	29401641	29401641	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	16	29401641	29401641	G	C	SNP	LOC728888	XM_002343430.1	human	genbank	58_37c	-1	model	missense	c.278	p.S93C	0.001	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
LOR	0	genome.wustl.edu	37	1	153233488	153233489	+	In_Frame_Ins	INS	-	-	GGCGGT	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	153233488	153233489	-	GGCGGT	INS	LOR	NM_000427.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.63_64	p.25in_frame_insGG	0.924:0.986	NULL	NULL	-	no_errors
LOXHD1	0	genome.wustl.edu	37	18	44125353	44125353	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	44125353	44125353	C	G	SNP	LOXHD1	NM_144612.6	human	genbank	58_37c	-1	reviewed	missense	c.2712	p.K904N	1.000	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	-	no_errors
MEIS2	0	genome.wustl.edu	37	15	37184576	37184592	+	Frame_Shift_Del	DEL	TGGGGAGGAGTGTAACT	TGGGGAGGAGTGTAACT	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	TGGGGAGGAGTGTAACT	TGGGGAGGAGTGTAACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	37184576	37184592	TGGGGAGGAGTGTAACT	-	DEL	MEIS2	NM_170675.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1232_1216	p.S406fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	no_errors
MIR7-3	0	genome.wustl.edu	37	19	4770765	4770765	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	4770765	4770765	G	A	SNP	MIR7-3	ENST00000384898	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151970835	151970835	+	Missense_Mutation	SNP	T	T	C	rs140432418	byFrequency	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	151970835	151970835	T	C	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	missense	c.967	p.I323V	1.000	HMMSmart_SM00249	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MLLT10	0	genome.wustl.edu	37	10	21962594	21962594	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	21962594	21962594	C	G	SNP	MLLT10	NM_004641.2	human	genbank	58_37c	+1	validated	missense	c.1367	p.S456C	1.000	NULL	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
MRGPRX1	0	genome.wustl.edu	37	11	18978452	18978452	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	18978452	18978452	C	T	SNP	MRGPRX1	ENST00000433222	human	ensembl	58_37c	-1	known	missense	c.109	p.V37I	0.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_start_codon
MT-CYB	0	genome.wustl.edu	37	MT	15574	15574	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	MT	15574	15574	C	T	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	silent	c.828	p.F276	NULL	HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MTIF2	0	genome.wustl.edu	37	2	55470655	55470655	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	55470655	55470655	C	T	SNP	MTIF2	NM_001005369.1	human	genbank	58_37c	-1	reviewed	silent	c.1461	p.K487	1.000	NULL	PatternScan_IF2,HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Translat_factor,superfamily_SSF52156,superfamily_SSF52540	-	no_errors
MUC5B	0	genome.wustl.edu	37	11	1272209	1272209	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	1272209	1272209	C	T	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	missense	c.14108	p.P4703L	0.002	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MUT	0	genome.wustl.edu	37	6	49426879	49426879	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	49426879	49426879	T	C	SNP	MUT	NM_000255.3	human	genbank	58_37c	-1	reviewed	missense	c.301	p.T101A	1.000	HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes	HMMPfam_MM_CoA_mutase,PatternScan_METMALONYL_COA_MUTASE,HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain,superfamily_Cobalamin (vitamin B12)-dependent enzymes	-	no_errors
MYH7B	0	genome.wustl.edu	37	20	33568430	33568430	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	33568430	33568430	C	A	SNP	MYH7B	NM_020884.3	human	genbank	58_37c	+1	reviewed	missense	c.518	p.P173Q	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYLK	0	genome.wustl.edu	37	3	123376021	123376021	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	123376021	123376021	C	A	SNP	MYLK	NM_053025.3	human	genbank	58_37c	-1	reviewed	nonsense	c.4240	p.E1414*	1.000	HMMPfam_fn3,superfamily_Fibronectin type III	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
MYT1	0	genome.wustl.edu	37	20	62868702	62868702	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	62868702	62868702	A	T	SNP	MYT1	NM_004535.2	human	genbank	58_37c	+1	reviewed	missense	c.3052	p.N1018Y	1.000	NULL	HMMPfam_zf-C2HC,HMMPfam_MYT1,superfamily_SSF103637	-	no_errors
NALCN	0	genome.wustl.edu	37	13	101777015	101777015	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	13	101777015	101777015	G	A	SNP	NALCN	NM_052867.2	human	genbank	58_37c	-1	validated	silent	c.2136	p.F712	1.000	NULL	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
NAMPTL	0	genome.wustl.edu	37	10	36813126	36813126	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	36813126	36813126	T	A	SNP	NAMPTL	ENST00000440465	human	ensembl	58_37c	-1	known	nonsense	c.37	p.K13*	1.000	NULL	HMMPfam_NAPRTase	-	no_start_codon
NAPA	0	genome.wustl.edu	37	19	47996232	47996232	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	47996232	47996232	C	G	SNP	NAPA	NM_003827.2	human	genbank	58_37c	-1	reviewed	missense	c.547	p.D183H	1.000	superfamily_TPR-like	HMMPfam_NSF,superfamily_TPR-like	-	no_errors
NBAS	0	genome.wustl.edu	37	2	15374818	15374818	+	Missense_Mutation	SNP	C	C	G	rs146811814	byFrequency	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	15374818	15374818	C	G	SNP	NBAS	NM_015909.2	human	genbank	58_37c	-1	validated	missense	c.5997	p.E1999D	0.010	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
NBEAL2	0	genome.wustl.edu	37	3	47045824	47045824	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	47045824	47045824	C	T	SNP	NBEAL2	NM_015175.1	human	genbank	58_37c	+1	validated	nonsense	c.6139	p.Q2047*	1.000	superfamily_BEACH domain	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
NEB	0	genome.wustl.edu	37	2	152435968	152435968	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	152435968	152435968	C	G	SNP	NEB	ENST00000413693	human	ensembl	58_37c	-1	known	missense	c.778	p.E260Q	1.000	HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_start_codon
NEXN	0	genome.wustl.edu	37	1	78395103	78395103	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	78395103	78395103	G	C	SNP	NEXN	NM_144573.3	human	genbank	58_37c	+1	reviewed	missense	c.967	p.E323Q	1.000	NULL	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NF2	0	genome.wustl.edu	37	22	30032827	30032844	+	In_Frame_Del	DEL	ATCAAGGACACAGTGGCC	ATCAAGGACACAGTGGCC	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	ATCAAGGACACAGTGGCC	ATCAAGGACACAGTGGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	22	30032827	30032844	ATCAAGGACACAGTGGCC	-	DEL	NF2	NM_000268.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.202_219	p.IKDTVA68in_frame_del	0.847:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.010:0.878:1.000:1.000:1.000:1.000:1.000	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like	superfamily_Moesin tail domain,HMMPfam_ERM,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
NLRP4	0	genome.wustl.edu	37	19	56370171	56370171	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	56370171	56370171	A	T	SNP	NLRP4	NM_134444.4	human	genbank	58_37c	+1	validated	missense	c.1412	p.D471V	0.000	NULL	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NT5DC3	0	genome.wustl.edu	37	12	104200107	104200107	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	104200107	104200107	C	G	SNP	NT5DC3	NM_001031701.2	human	genbank	58_37c	-1	validated	missense	c.517	p.V173L	1.000	HMMPfam_5_nucleotid,superfamily_HAD-like	HMMPfam_5_nucleotid,superfamily_HAD-like	-	no_errors
OIP5	0	genome.wustl.edu	37	15	41624735	41624735	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	41624735	41624735	G	C	SNP	OIP5	NM_007280.1	human	genbank	58_37c	-1	provisional	missense	c.25	p.R9G	0.000	NULL	NULL	-	no_errors
OR10J5	0	genome.wustl.edu	37	1	159505696	159505696	+	Silent	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	159505696	159505696	G	C	SNP	OR10J5	NM_001004469.1	human	genbank	58_37c	-1	provisional	silent	c.102	p.V34	0.713	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OTOF	0	genome.wustl.edu	37	2	26688938	26688938	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	26688938	26688938	C	G	SNP	OTOF	NM_194248.2	human	genbank	58_37c	-1	reviewed	missense	c.4507	p.D1503H	1.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PCDHGB4	0	genome.wustl.edu	37	5	140767563	140767563	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	5	140767563	140767563	C	A	SNP	PCDHGB4	NM_003736.2	human	genbank	58_37c	+1	reviewed	missense	c.112	p.P38T	0.999	HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDE10A	0	genome.wustl.edu	37	6	165827098	165827098	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	165827098	165827098	C	G	SNP	PDE10A	NM_001130690.1	human	genbank	58_37c	-1	validated	missense	c.1169	p.G390A	1.000	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_GAF,HMMSmart_HDc,superfamily_SSF109604,superfamily_SSF55781	-	no_errors
PDE10A	0	genome.wustl.edu	37	6	165832134	165832134	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	165832134	165832134	G	T	SNP	PDE10A	NM_001130690.1	human	genbank	58_37c	-1	validated	silent	c.987	p.T329	1.000	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_GAF,HMMSmart_HDc,superfamily_SSF109604,superfamily_SSF55781	-	no_errors
PEX11G	0	genome.wustl.edu	37	19	7547069	7547069	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	7547069	7547069	G	T	SNP	PEX11G	NM_080662.2	human	genbank	58_37c	-1	provisional	missense	c.278	p.S93Y	0.995	HMMPfam_PEX11	HMMPfam_PEX11	-	no_errors
PIGM	0	genome.wustl.edu	37	1	160000705	160000705	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	160000705	160000705	G	C	SNP	PIGM	NM_145167.2	human	genbank	58_37c	-1	reviewed	missense	c.825	p.F275L	1.000	HMMPfam_Mannosyl_trans	HMMPfam_Mannosyl_trans	-	no_errors
PLA2R1	0	genome.wustl.edu	37	2	160825803	160825803	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	160825803	160825803	G	C	SNP	PLA2R1	NM_007366.3	human	genbank	58_37c	-1	validated	missense	c.2728	p.Q910E	1.000	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMSmart_SM00458,HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Ricin B-like lectins,superfamily_Kringle-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
PLAC9	0	genome.wustl.edu	37	10	81901933	81901933	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	10	81901933	81901933	G	C	SNP	PLAC9	NM_001012973.1	human	genbank	58_37c	+1	provisional	missense	c.160	p.E54Q	0.987	NULL	NULL	-	no_errors
PLEKHM3	0	genome.wustl.edu	37	2	208811101	208811101	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	208811101	208811101	G	C	SNP	PLEKHM3	NM_001080475.2	human	genbank	58_37c	-1	validated	nonsense	c.1682	p.S561*	0.977	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
POLR3D	0	genome.wustl.edu	37	8	22107968	22107968	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	8	22107968	22107968	C	T	SNP	POLR3D	NM_001722.2	human	genbank	58_37c	+1	reviewed	silent	c.1134	p.H378	0.918	HMMPfam_RNA_pol_Rpc4	HMMPfam_RNA_pol_Rpc4	-	no_errors
POTEE	0	genome.wustl.edu	37	2	132021709	132021709	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	132021709	132021709	C	T	SNP	POTEE	NM_001083538.1	human	genbank	58_37c	+1	validated	missense	c.2681	p.T894I	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
PPM1B	0	genome.wustl.edu	37	2	44428733	44428733	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	44428733	44428733	C	G	SNP	PPM1B	NM_002706.4	human	genbank	58_37c	+1	reviewed	nonsense	c.395	p.S132*	1.000	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	PatternScan_PP2C,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C_C,superfamily_Protein serine/threonine phosphatase 2C C-terminal domain,HMMPfam_PP2C	-	no_errors
PPP2R5D	0	genome.wustl.edu	37	6	42976473	42976473	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	42976473	42976473	C	G	SNP	PPP2R5D	NM_006245.2	human	genbank	58_37c	+1	reviewed	missense	c.1069	p.L357V	0.997	HMMPfam_B56	HMMPfam_B56	-	no_errors
PREX1	0	genome.wustl.edu	37	20	47309237	47309237	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	47309237	47309237	C	A	SNP	PREX1	NM_020820.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1009	p.E337*	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
PRICKLE4	0	genome.wustl.edu	37	6	41753249	41753249	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	41753249	41753249	C	G	SNP	PRICKLE4	NM_013397.5	human	genbank	58_37c	+1	validated	missense	c.553	p.L185V	0.837	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_PET,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
PRKAR1B	0	genome.wustl.edu	37	7	720286	720286	+	Silent	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	720286	720286	G	C	SNP	PRKAR1B	NM_002735.2	human	genbank	58_37c	-1	validated	silent	c.255	p.T85	0.006	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_RIIa,HMMSmart_RIIa,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
PRMT7	0	genome.wustl.edu	37	16	68382280	68382280	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	16	68382280	68382280	C	G	SNP	PRMT7	NM_019023.2	human	genbank	58_37c	+1	validated	missense	c.1359	p.N453K	0.023	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
PRPF4B	0	genome.wustl.edu	37	6	4037783	4037783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	4037783	4037783	G	A	SNP	PRPF4B	NM_003913.4	human	genbank	58_37c	+1	reviewed	missense	c.1391	p.R464K	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
PRPF6	0	genome.wustl.edu	37	20	62616368	62616368	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	20	62616368	62616368	A	C	SNP	PRPF6	NM_012469.3	human	genbank	58_37c	+1	reviewed	missense	c.349	p.K117Q	1.000	HMMPfam_PRP1_N	HMMPfam_TPR_1,HMMSmart_HAT,HMMPfam_PRP1_N,superfamily_SSF48452	-	no_errors
PTPN3	0	genome.wustl.edu	37	9	112199160	112199164	+	Frame_Shift_Del	DEL	TACCC	TACCC	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	TACCC	TACCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	9	112199160	112199164	TACCC	-	DEL	PTPN3	NM_002829.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.678_674	p.R225fs	0.995:1.000:1.000:1.000:1.000	superfamily_SSF50729	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
RAB42P1	0	genome.wustl.edu	37	14	90358707	90358707	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	14	90358707	90358707	G	C	SNP	RAB42P1	ENST00000389290	human	ensembl	58_37c	+1	known	missense	c.549	p.L183F	1.000	NULL	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_start_codon:no_stop_codon
RBBP8	0	genome.wustl.edu	37	18	20581659	20581659	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	20581659	20581659	G	C	SNP	RBBP8	NM_002894.2	human	genbank	58_37c	+1	reviewed	missense	c.2254	p.E752Q	0.057	NULL	HMMPfam_SAE2,HMMPfam_CtIP_N	-	no_errors
RGPD4	0	genome.wustl.edu	37	2	108487221	108487221	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	108487221	108487221	G	C	SNP	RGPD4	NM_182588.2	human	genbank	58_37c	+1	validated	missense	c.2761	p.D921H	1.000	NULL	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip,HMMPfam_TPR_1,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
RIN3	0	genome.wustl.edu	37	14	93118024	93118024	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	14	93118024	93118024	C	G	SNP	RIN3	NM_024832.3	human	genbank	58_37c	+1	validated	silent	c.630	p.L210	0.340	NULL	HMMSmart_SM00252,HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204),superfamily_SH2 domain	-	no_errors
RNF128	0	genome.wustl.edu	37	X	105937522	105937522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	105937522	105937522	G	A	SNP	RNF128	NM_024539.3	human	genbank	58_37c	+1	reviewed	missense	c.290	p.R97K	1.000	HMMPfam_PA,superfamily_SSF52025	HMMSmart_RING,HMMPfam_PA,HMMPfam_zf-C3HC4,superfamily_SSF52025,superfamily_SSF57850	-	no_errors
SALL1	0	genome.wustl.edu	37	16	51175790	51175790	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	16	51175790	51175790	C	G	SNP	SALL1	NM_002968.2	human	genbank	58_37c	-1	reviewed	missense	c.343	p.E115Q	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SERPINE1	0	genome.wustl.edu	37	7	100773847	100773847	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	100773847	100773847	G	T	SNP	SERPINE1	NM_000602.3	human	genbank	58_37c	+1	reviewed	silent	c.417	p.L139	0.965	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SHE	0	genome.wustl.edu	37	1	154473950	154473950	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	154473950	154473950	C	T	SNP	SHE	NM_001010846.2	human	genbank	58_37c	-1	validated	missense	c.553	p.E185K	0.982	NULL	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550	-	no_errors
SLC15A2	0	genome.wustl.edu	37	3	121658238	121658238	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	121658238	121658238	C	G	SNP	SLC15A2	NM_021082.3	human	genbank	58_37c	+1	validated	missense	c.1804	p.P602A	0.027	NULL	HMMPfam_PTR2,superfamily_MFS_gen_substrate_transporter,PatternScan_PTR2_1,PatternScan_PTR2_2,superfamily_SSF75217	-	no_errors
SLC35A2	0	genome.wustl.edu	37	X	48762118	48762118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	48762118	48762118	G	A	SNP	SLC35A2	NM_001032289.1	human	genbank	58_37c	-1	provisional	missense	c.478	p.R160W	0.179	NULL	HMMPfam_Nuc_sug_transp	-	no_errors
SMAP1	0	genome.wustl.edu	37	6	71546704	71546704	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	71546704	71546704	G	C	SNP	SMAP1	NM_001044305.1	human	genbank	58_37c	+1	reviewed	missense	c.637	p.E213Q	1.000	NULL	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain	-	no_errors
SMC6	0	genome.wustl.edu	37	2	17896164	17896164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	17896164	17896164	G	A	SNP	SMC6	NM_001142286.1	human	genbank	58_37c	-1	validated	missense	c.1694	p.S565F	0.978	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SMEK2	0	genome.wustl.edu	37	2	55806833	55806833	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	2	55806833	55806833	C	T	SNP	SMEK2	NM_001122964.1	human	genbank	58_37c	-1	validated	missense	c.1450	p.E484K	1.000	superfamily_ARM repeat	HMMPfam_DUF625,superfamily_ARM repeat,superfamily_PH domain-like	-	no_errors
SNX15	0	genome.wustl.edu	37	11	64803125	64803125	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	64803125	64803125	C	A	SNP	SNX15	NM_013306.3	human	genbank	58_37c	+1	reviewed	missense	c.654	p.F218L	1.000	NULL	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_MIT,HMMSmart_SM00745	-	no_errors
SPIC	0	genome.wustl.edu	37	12	101871392	101871392	+	Silent	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	101871392	101871392	G	C	SNP	SPIC	NM_152323.1	human	genbank	58_37c	+1	provisional	silent	c.60	p.L20	0.980	NULL	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors
SSC5D	0	genome.wustl.edu	37	19	56029199	56029200	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	56029199	56029200	-	A	INS	SSC5D	NM_001144950.1	human	genbank	58_37c	+1	provisional	frame_shift_ins	c.3556_3557	p.H1186fs	0.001:0.000	NULL	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
SSRP1	0	genome.wustl.edu	37	11	57099625	57099625	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	57099625	57099625	C	A	SNP	SSRP1	NM_003146.2	human	genbank	58_37c	-1	reviewed	splice_site	c.1001+1	e7+1	1.000	-	-	-	no_errors
STIP1	0	genome.wustl.edu	37	11	63970680	63970680	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	63970680	63970680	G	C	SNP	STIP1	NM_006819.2	human	genbank	58_37c	+1	validated	missense	c.1366	p.D456H	1.000	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_STI1,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
TCP11L2	0	genome.wustl.edu	37	12	106729428	106729428	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	106729428	106729428	C	T	SNP	TCP11L2	NM_152772.1	human	genbank	58_37c	+1	provisional	nonsense	c.784	p.Q262*	0.634	HMMPfam_Tcp11	HMMPfam_Tcp11	-	no_errors
TMEM132B	0	genome.wustl.edu	37	12	126068622	126068622	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	126068622	126068622	C	G	SNP	TMEM132B	ENST00000418253	human	ensembl	58_37c	+1	known	missense	c.1483	p.H495D	0.000	NULL	NULL	-	no_errors
TMEM223	0	genome.wustl.edu	37	11	62558104	62558104	+	Silent	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	62558104	62558104	C	G	SNP	TMEM223	NM_001080501.2	human	genbank	58_37c	-1	validated	silent	c.600	p.R200	0.977	NULL	NULL	-	no_errors
TMEM68	0	genome.wustl.edu	37	8	56668876	56668876	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	8	56668876	56668876	G	A	SNP	TMEM68	NM_152417.1	human	genbank	58_37c	-1	provisional	silent	c.420	p.F140	1.000	HMMPfam_Acyltransferase,HMMSmart_PlsC	HMMPfam_Acyltransferase,HMMSmart_PlsC	-	no_errors
TNRC6C	0	genome.wustl.edu	37	17	76047128	76047128	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	76047128	76047128	G	A	SNP	TNRC6C	NM_001142640.1	human	genbank	58_37c	+1	validated	missense	c.1985	p.G662D	0.998	NULL	HMMPfam_UBA,HMMPfam_RRM_1,superfamily_UBA-like,HMMSmart_SM00165,HMMPfam_Ago_hook,superfamily_RNA-binding domain RBD	-	no_errors
TOMM6	0	genome.wustl.edu	37	6	41757047	41757047	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	41757047	41757047	C	A	SNP	TOMM6	NM_001134493.1	human	genbank	58_37c	+1	validated	missense	c.206	p.A69E	1.000	NULL	NULL	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578442	7578442	+	Missense_Mutation	SNP	T	T	C	rs148924904	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	17	7578442	7578442	T	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.488	p.Y163C	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPP2	0	genome.wustl.edu	37	13	103281891	103281891	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	13	103281891	103281891	G	A	SNP	TPP2	NM_003291.2	human	genbank	58_37c	+1	reviewed	missense	c.1076	p.S359N	1.000	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53	-	no_errors
TYR	0	genome.wustl.edu	37	11	88961113	88961113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	11	88961113	88961113	C	T	SNP	TYR	NM_000372.4	human	genbank	58_37c	+1	reviewed	missense	c.1159	p.L387F	1.000	HMMPfam_Tyrosinase,PatternScan_TYROSINASE_2,superfamily_Di-copper centre-containing domain	PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1,PatternScan_TYROSINASE_2,superfamily_Di-copper centre-containing domain,PatternScan_EGF_1	-	no_errors
UGT2A2	0	genome.wustl.edu	37	4	70504739	70504739	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	4	70504739	70504739	G	C	SNP	UGT2A2	NM_001105677.1	human	genbank	58_37c	-1	inferred	nonsense	c.596	p.S199*	1.000	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
ULK3	0	genome.wustl.edu	37	15	75131064	75131064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	75131064	75131064	G	A	SNP	ULK3	NM_001099436.1	human	genbank	58_37c	-1	validated	missense	c.1022	p.A341V	1.000	HMMPfam_MIT,HMMSmart_SM00745	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_MIT,HMMSmart_SM00745,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
USP26	0	genome.wustl.edu	37	X	132160197	132160197	+	Silent	SNP	G	G	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	132160197	132160197	G	T	SNP	USP26	NM_031907.1	human	genbank	58_37c	-1	reviewed	silent	c.2052	p.L684	0.002	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
UTP20	0	genome.wustl.edu	37	12	101699730	101699730	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	12	101699730	101699730	G	A	SNP	UTP20	NM_014503.2	human	genbank	58_37c	+1	validated	missense	c.1819	p.D607N	1.000	superfamily_ARM repeat	HMMPfam_DRIM,superfamily_ARM repeat	-	no_errors
UTRN	0	genome.wustl.edu	37	6	144869832	144869832	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	144869832	144869832	C	A	SNP	UTRN	NM_007124.2	human	genbank	58_37c	+1	reviewed	missense	c.6652	p.Q2218K	0.047	NULL	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
VPS33B	0	genome.wustl.edu	37	15	91561082	91561082	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	91561082	91561082	C	G	SNP	VPS33B	NM_018668.3	human	genbank	58_37c	-1	reviewed	missense	c.130	p.D44H	0.999	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins	-	no_errors
WBP11P1	0	genome.wustl.edu	37	18	30092770	30092778	+	RNA	DEL	CTGACTCCT	CTGACTCCT	-	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	CTGACTCCT	CTGACTCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	18	30092770	30092778	CTGACTCCT	-	DEL	WBP11P1	NR_003558.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	1.000:1.000:0.999:1.000:1.000:1.000:1.000:0.999:0.997	-	-	-	pseudogene
WDR72	0	genome.wustl.edu	37	15	53908000	53908000	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	15	53908000	53908000	G	A	SNP	WDR72	NM_182758.2	human	genbank	58_37c	-1	validated	silent	c.2403	p.C801	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
XPNPEP2	0	genome.wustl.edu	37	X	128889307	128889307	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	X	128889307	128889307	A	C	SNP	XPNPEP2	NM_003399.5	human	genbank	58_37c	+1	reviewed	missense	c.1255	p.I419L	1.000	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core	HMMPfam_Creatinase_N,HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core,PatternScan_PROLINE_PEPTIDASE,superfamily_SSF53092	-	no_errors
XRN1	0	genome.wustl.edu	37	3	142095323	142095323	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	3	142095323	142095323	T	C	SNP	XRN1	ENST00000498077	human	ensembl	58_37c	-1	known	missense	c.1225	p.K409E	1.000	NULL	superfamily_dsRNA-binding domain-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF277	0	genome.wustl.edu	37	7	111846820	111846820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	7	111846820	111846820	C	T	SNP	ZNF277	NM_021994.2	human	genbank	58_37c	+1	validated	missense	c.49	p.R17C	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF292	0	genome.wustl.edu	37	6	87964520	87964520	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	6	87964520	87964520	G	A	SNP	ZNF292	NM_015021.1	human	genbank	58_37c	+1	validated	silent	c.1173	p.L391	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF587	0	genome.wustl.edu	37	19	58370285	58370285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	58370285	58370285	C	T	SNP	ZNF587	ENST00000339656	human	ensembl	58_37c	+1	known	missense	c.505	p.P169S	0.008	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF676	0	genome.wustl.edu	37	19	22363099	22363099	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	19	22363099	22363099	C	G	SNP	ZNF676	NM_001001411.2	human	genbank	58_37c	-1	provisional	missense	c.1420	p.E474Q	1.000	superfamily_SSF57667	HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF678	0	genome.wustl.edu	37	1	227842649	227842649	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PB-01A-11D-A142-09	TCGA-EW-A1PB-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9ddf2119-a222-4fa5-a9f3-0bec7eeea36b	26aa0f07-c813-4659-88fa-fdbae73a937e	1	227842649	227842649	G	C	SNP	ZNF678	NM_178549.3	human	genbank	58_37c	+1	validated	missense	c.698	p.G233A	1.000	superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
