Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB5	0	genome.wustl.edu	37	7	20687685	20687685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	7	20687685	20687685	C	T	SNP	ABCB5	ENST00000404938	human	ensembl	58_37c	+1	known	missense	c.1190	p.S397L	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AMPD1	0	genome.wustl.edu	37	1	115217393	115217393	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	115217393	115217393	G	C	SNP	AMPD1	NM_000036.2	human	genbank	58_37c	-1	reviewed	missense	c.1780	p.H594D	1.000	HMMPfam_A_deaminase,superfamily_SSF51556	HMMPfam_A_deaminase,PatternScan_A_DEAMINASE,superfamily_SSF51556	-	no_errors
AP1G2	0	genome.wustl.edu	37	14	24032994	24032994	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	14	24032994	24032994	G	T	SNP	AP1G2	NM_003917.2	human	genbank	58_37c	-1	reviewed	missense	c.1163	p.A388D	1.000	HMMPfam_Adaptin_N,superfamily_ARM-type_fold	HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2,superfamily_Clath_adapt,superfamily_ARM-type_fold	-	no_errors
ARFIP2	0	genome.wustl.edu	37	11	6499366	6499366	+	Silent	SNP	T	T	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	11	6499366	6499366	T	C	SNP	ARFIP2	NM_012402.2	human	genbank	58_37c	-1	validated	silent	c.600	p.L200	0.911	HMMPfam_Arfaptin	HMMPfam_Arfaptin	-	no_errors
BCOR	0	genome.wustl.edu	37	X	39931968	39931968	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	X	39931968	39931968	G	A	SNP	BCOR	NM_001123385.1	human	genbank	58_37c	-1	reviewed	silent	c.2631	p.T877	0.002	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
C14orf145	0	genome.wustl.edu	37	14	81329196	81329196	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	14	81329196	81329196	G	A	SNP	C14orf145	NM_152446.3	human	genbank	58_37c	-1	validated	missense	c.667	p.R223W	0.727	NULL	NULL	-	no_errors
CD14	0	genome.wustl.edu	37	5	140012442	140012442	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	5	140012442	140012442	G	T	SNP	CD14	NM_000591.3	human	genbank	58_37c	-1	reviewed	missense	c.127	p.P43T	0.965	NULL	HMMPfam_LRR_1,superfamily_SSF52047	-	no_errors
CEACAM4	0	genome.wustl.edu	37	19	42126986	42126986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	42126986	42126986	C	T	SNP	CEACAM4	NM_001817.2	human	genbank	58_37c	-1	validated	missense	c.557	p.R186H	0.000	NULL	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
COL5A1	0	genome.wustl.edu	37	9	137623972	137623972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	137623972	137623972	C	T	SNP	COL5A1	NM_000093.3	human	genbank	58_37c	+1	reviewed	missense	c.1388	p.P463L	1.000	NULL	HMMPfam_COLFI,HMMSmart_COLFI,HMMSmart_LamG,HMMSmart_TSPN,HMMPfam_Collagen,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2	-	no_errors
DKKL1	0	genome.wustl.edu	37	19	49878066	49878066	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	49878066	49878066	G	A	SNP	DKKL1	NM_014419.3	human	genbank	58_37c	+1	reviewed	nonsense	c.510	p.W170*	1.000	NULL	NULL	-	no_errors
DNAH9	0	genome.wustl.edu	37	17	11597227	11597227	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	11597227	11597227	C	G	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	missense	c.4657	p.L1553V	1.000	HMMPfam_DHC_N2	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EDEM2	0	genome.wustl.edu	37	20	33734882	33734882	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	20	33734882	33734882	G	A	SNP	EDEM2	NR_026728.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
ENSG00000169203	0	genome.wustl.edu	37	16	29496834	29496834	+	Silent	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	16	29496834	29496834	C	T	SNP	ENSG00000169203	ENST00000354563	human	ensembl	58_37c	-1	known	silent	c.441	p.K147	0.001	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
ENSG00000198899	0	genome.wustl.edu	37	MT	8857	8857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	MT	8857	8857	G	A	SNP	ENSG00000198899	ENST00000361899	human	ensembl	58_37c	+1	known	missense	c.331	p.G111S	NULL	HMMPfam_ATP-synt_A,superfamily_F1F0 ATP synthase subunit A	HMMPfam_ATP-synt_A,PatternScan_ATPASE_A,superfamily_F1F0 ATP synthase subunit A	-	mismatch_between_exon_seq_and_reference
ENSG00000198899	0	genome.wustl.edu	37	MT	8939	8939	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	MT	8939	8939	T	C	SNP	ENSG00000198899	ENST00000361899	human	ensembl	58_37c	+1	known	missense	c.413	p.I138T	NULL	HMMPfam_ATP-synt_A,superfamily_F1F0 ATP synthase subunit A	HMMPfam_ATP-synt_A,PatternScan_ATPASE_A,superfamily_F1F0 ATP synthase subunit A	-	mismatch_between_exon_seq_and_reference
ENSG00000224343	0	genome.wustl.edu	37	6	160132356	160132373	+	In_Frame_Del	DEL	CTCACACTGCTCTGACCT	CTCACACTGCTCTGACCT	-	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	CTCACACTGCTCTGACCT	CTCACACTGCTCTGACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	6	160132356	160132373	CTCACACTGCTCTGACCT	-	DEL	ENSG00000224343	ENST00000442642	human	ensembl	58_37c	-1	known	in_frame_del	c.470_453	p.QSSVSG153in_frame_del	0.042:0.038:0.034:0.030:0.024:0.019:0.019:0.019:0.018:0.017:0.015:0.014:0.011:0.008:0.005:0.005:0.004:0.005	NULL	NULL	-	no_start_codon
ENSG00000231520	0	genome.wustl.edu	37	10	42380519	42380519	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	10	42380519	42380519	C	T	SNP	ENSG00000231520	ENST00000413838	human	ensembl	58_37c	-1	known	missense	c.13	p.G5R	0.000	NULL	NULL	-	no_stop_codon
ENSG00000232657	0	genome.wustl.edu	37	4	49110262	49110262	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	49110262	49110262	T	A	SNP	ENSG00000232657	ENST00000417378	human	ensembl	58_37c	-1	known	missense	c.137	p.E46V	0.000	NULL	NULL	-	no_stop_codon
ENSG00000249390	0	genome.wustl.edu	37	11	3838872	3838872	+	RNA	SNP	G	G	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	11	3838872	3838872	G	T	SNP	ENSG00000249390	ENST00000502872	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.002	-	-	-	no_errors
FAM182A	0	genome.wustl.edu	37	20	26064428	26064428	+	RNA	SNP	G	T	T	rs138535804	byCluster	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	20	26064428	26064428	G	T	SNP	FAM182A	NR_026713.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.726	-	-	-	no_errors
FAM182B	0	genome.wustl.edu	37	20	25754119	25754120	+	RNA	INS	-	-	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	20	25754119	25754120	-	T	INS	FAM182B	NR_026714.2	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.998:0.997	-	-	-	no_errors
GAGE8	0	genome.wustl.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	X	49208295	49208296	-	TAT	INS	GAGE8	NM_012196.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.24_25	p.9in_frame_insY	0.002:0.002	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
GJA8	0	genome.wustl.edu	37	1	147380700	147380700	+	Silent	SNP	C	C	T	rs148480116	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	147380700	147380700	C	T	SNP	GJA8	NM_005267.4	human	genbank	58_37c	+1	reviewed	silent	c.618	p.I206	1.000	HMMPfam_Connexin_CCC	HMMPfam_Connexin50,HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
HOOK1	0	genome.wustl.edu	37	1	60306040	60306040	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	60306040	60306040	A	G	SNP	HOOK1	ENST00000371208	human	ensembl	58_37c	+1	known	missense	c.598	p.R200G	0.473	HMMPfam_HOOK,superfamily_Prefoldin	HMMPfam_HOOK,superfamily_Prefoldin	-	no_errors
KIAA0020	0	genome.wustl.edu	37	9	2812275	2812275	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	2812275	2812275	G	C	SNP	KIAA0020	NM_014878.4	human	genbank	58_37c	-1	validated	missense	c.1357	p.H453D	0.999	HMMSmart_SM00025,HMMPfam_CPL,superfamily_ARM repeat	HMMSmart_SM00025,HMMPfam_CPL,superfamily_ARM repeat	-	no_errors
KIAA1429	0	genome.wustl.edu	37	8	95500959	95500959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	95500959	95500959	C	T	SNP	KIAA1429	NM_015496.3	human	genbank	58_37c	-1	validated	missense	c.5414	p.R1805H	1.000	NULL	NULL	-	no_errors
KIAA1715	0	genome.wustl.edu	37	2	176802242	176802242	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	176802242	176802242	G	C	SNP	KIAA1715	NM_030650.1	human	genbank	58_37c	-1	validated	missense	c.884	p.A295G	1.000	HMMPfam_DUF2296	HMMPfam_DUF2296	-	no_errors
KRT7	0	genome.wustl.edu	37	12	52636898	52636898	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	52636898	52636898	G	C	SNP	KRT7	NM_005556.3	human	genbank	58_37c	+1	reviewed	missense	c.961	p.E321Q	1.000	superfamily_Prefoldin,HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LAMC1	0	genome.wustl.edu	37	1	183093958	183093960	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	183093958	183093960	AAG	-	DEL	LAMC1	NM_002293.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2594_2596	p.KD865in_frame_delN	1.000:0.998:0.999	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196	HMMPfam_Laminin_B,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF57196	-	no_errors
LCT	0	genome.wustl.edu	37	2	136566347	136566347	+	Silent	SNP	A	A	G	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	136566347	136566347	A	G	SNP	LCT	NM_002299.2	human	genbank	58_37c	-1	reviewed	silent	c.3570	p.T1190	0.482	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F1_1,PatternScan_GLYCOSYL_HYDROL_F1_2	-	no_errors
LGR5	0	genome.wustl.edu	37	12	71833917	71833917	+	Silent	SNP	G	G	A	rs147257938	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	71833917	71833917	G	A	SNP	LGR5	NM_003667.2	human	genbank	58_37c	+1	provisional	silent	c.57	p.A19	0.981	NULL	HMMPfam_7tm_1,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LINGO2	0	genome.wustl.edu	37	9	27949218	27949218	+	Silent	SNP	G	G	A	rs150860330	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	27949218	27949218	G	A	SNP	LINGO2	NM_152570.1	human	genbank	58_37c	-1	provisional	silent	c.1452	p.I484	0.202	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
LOC388849	0	genome.wustl.edu	37	22	20150779	20150781	+	In_Frame_Del	DEL	ACC	ACC	-	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	ACC	ACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	22	20150779	20150781	ACC	-	DEL	LOC388849	XM_373945.7	human	genbank	58_37c	-1	model	in_frame_del	c.353_351	p.V119in_frame_del	0.932:0.929:0.924	NULL	NULL	-	no_errors
LOC645744	0	genome.wustl.edu	37	17	33825540	33825540	+	RNA	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	33825540	33825540	C	T	SNP	LOC645744	XR_017633.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC653071	0	genome.wustl.edu	37	4	68341	68341	+	RNA	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	68341	68341	G	A	SNP	LOC653071	XR_078735.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.029	-	-	-	no_errors
LOC730257	0	genome.wustl.edu	37	1	144519342	144519343	+	RNA	INS	-	-	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	144519342	144519343	-	A	INS	LOC730257	XR_078229.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.011:0.352	-	-	-	pseudogene
LPCAT4	0	genome.wustl.edu	37	15	34655637	34655637	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	15	34655637	34655637	C	T	SNP	LPCAT4	NM_153613.2	human	genbank	58_37c	-1	validated	nonsense	c.732	p.W244*	1.000	superfamily_Glycerol-3-phosphate (1)-acyltransferase	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase	-	no_errors
LRP2	0	genome.wustl.edu	37	2	170134405	170134405	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	170134405	170134405	G	T	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.1622	p.A541E	1.000	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_Grow_fac_recept,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MMP11	0	genome.wustl.edu	37	22	24124523	24124523	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	22	24124523	24124523	G	A	SNP	MMP11	NM_005940.3	human	genbank	58_37c	+1	reviewed	missense	c.1186	p.E396K	0.984	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120	"superfamily_Hemopexin-like domain,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,PatternScan_ZINC_PROTEASE,HMMSmart_SM00235,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
MYLPF	0	genome.wustl.edu	37	16	30389183	30389183	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	16	30389183	30389183	T	C	SNP	MYLPF	NM_013292.3	human	genbank	58_37c	+1	provisional	missense	c.472	p.Y158H	1.000	superfamily_EF-hand	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
NBEAL2	0	genome.wustl.edu	37	3	47046220	47046240	+	Splice_Site	DEL	GTTCCCTGCCAACCCCCAGAG	GTTCCCTGCCAACCCCCAGAG	-	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	GTTCCCTGCCAACCCCCAGAG	GTTCCCTGCCAACCCCCAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	3	47046220	47046240	GTTCCCTGCCAACCCCCAGAG	-	DEL	NBEAL2	ENST00000445550	human	ensembl	58_37c	+1	known	splice_site_del	c.135+1_21	e1+1	0.006:0.004:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.001:0.000:0.000:0.000:0.000	-	-	-	no_start_codon
NOTCH1	0	genome.wustl.edu	37	9	139390869	139390870	+	Frame_Shift_Ins	INS	-	-	CCTGGCTC	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	139390869	139390870	-	CCTGGCTC	INS	NOTCH1	NM_017617.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.7322_7321	p.A2441fs	0.986:1.000	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_NL,superfamily_Notch_region,HMMSmart_EGF_CA,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
NOTCH1	0	genome.wustl.edu	37	9	139390877	139390878	+	In_Frame_Ins	INS	-	-	CCT	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	139390877	139390878	-	CCT	INS	NOTCH1	NM_017617.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.7314_7313	p.2439in_frame_insG	0.845:0.973	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Notch,HMMSmart_NL,superfamily_Notch_region,HMMSmart_EGF_CA,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_NOD,HMMPfam_NODP,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
PCDH15	0	genome.wustl.edu	37	10	55582871	55582871	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	10	55582871	55582871	T	A	SNP	PCDH15	NM_001142763.1	human	genbank	58_37c	-1	reviewed	missense	c.4636	p.N1546Y	0.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
PDZD2	0	genome.wustl.edu	37	5	32090922	32090922	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	5	32090922	32090922	G	C	SNP	PDZD2	NM_178140.2	human	genbank	58_37c	+1	reviewed	missense	c.7368	p.M2456I	0.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PROX1	0	genome.wustl.edu	37	1	214184963	214184963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	214184963	214184963	G	A	SNP	PROX1	NM_002763.3	human	genbank	58_37c	+1	provisional	missense	c.1933	p.D645N	1.000	HMMPfam_Prox1,superfamily_Homeodomain_like	HMMPfam_Prox1,superfamily_Homeodomain_like	-	no_errors
PRUNE	0	genome.wustl.edu	37	1	150998051	150998051	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	150998051	150998051	A	G	SNP	PRUNE	NM_021222.1	human	genbank	58_37c	+1	provisional	missense	c.581	p.D194G	0.998	superfamily_DHH phosphoesterases	HMMPfam_DHH,HMMPfam_DHHA2,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_DHH phosphoesterases	-	no_errors
PXDNL	0	genome.wustl.edu	37	8	52321996	52321996	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	52321996	52321996	G	T	SNP	PXDNL	NM_144651.4	human	genbank	58_37c	-1	validated	missense	c.2188	p.H730N	0.786	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_LRR_1,HMMPfam_An_peroxidase,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Heme-dependent peroxidases,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
RDH14	0	genome.wustl.edu	37	2	18736520	18736520	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	18736520	18736520	C	G	SNP	RDH14	NM_020905.3	human	genbank	58_37c	-1	validated	missense	c.948	p.M316I	1.000	NULL	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
RFC1	0	genome.wustl.edu	37	4	39301747	39301747	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	39301747	39301747	T	C	SNP	RFC1	NM_002913.3	human	genbank	58_37c	-1	reviewed	missense	c.2702	p.K901R	1.000	superfamily_Pol_clamp_load_C	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1,superfamily_SSF52540	-	no_errors
RPL18	0	genome.wustl.edu	37	19	49119337	49119337	+	Silent	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	49119337	49119337	G	A	SNP	RPL18	NM_000979.2	human	genbank	58_37c	-1	reviewed	silent	c.420	p.S140	0.987	HMMPfam_Ribosomal_L18e,superfamily_Ribosomal proteins L15p and L18e	HMMPfam_Ribosomal_L18e,PatternScan_RIBOSOMAL_L18E,superfamily_Ribosomal proteins L15p and L18e	-	no_errors
RPL18	0	genome.wustl.edu	37	19	49119901	49119910	+	Frame_Shift_Del	DEL	CAGCACAGCA	CAGCACAGCA	-	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	CAGCACAGCA	CAGCACAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	49119901	49119910	CAGCACAGCA	-	DEL	RPL18	ENST00000450952	human	ensembl	58_37c	-1	known	frame_shift_del	c.378_369	p.C123fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.003:0.001:0.009	NULL	HMMPfam_Ribosomal_L18e,PatternScan_RIBOSOMAL_L18E,superfamily_Ribosomal proteins L15p and L18e	-	no_errors
RYR2	0	genome.wustl.edu	37	1	237806646	237806646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	237806646	237806646	G	A	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	missense	c.7241	p.G2414E	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SCN7A	0	genome.wustl.edu	37	2	167284443	167284443	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	167284443	167284443	C	T	SNP	SCN7A	NM_002976.2	human	genbank	58_37c	-1	validated	missense	c.2708	p.R903H	0.000	NULL	HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SLC38A3	0	genome.wustl.edu	37	3	50252106	50252106	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	3	50252106	50252106	G	A	SNP	SLC38A3	NM_006841.4	human	genbank	58_37c	+1	validated	missense	c.205	p.G69R	1.000	HMMPfam_Aa_trans	HMMPfam_Aa_trans	-	no_errors
SLC4A11	0	genome.wustl.edu	37	20	3209652	3209652	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	20	3209652	3209652	A	C	SNP	SLC4A11	NM_032034.3	human	genbank	58_37c	-1	reviewed	missense	c.2072	p.V691G	1.000	HMMPfam_HCO3_cotransp	HMMPfam_HCO3_cotransp,superfamily_Phoshotransferase/anion transport protein	-	no_errors
SYBU	0	genome.wustl.edu	37	8	110655166	110655166	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	110655166	110655166	A	G	SNP	SYBU	NM_001099756.1	human	genbank	58_37c	-1	validated	missense	c.11	p.F4S	1.000	NULL	NULL	-	no_errors
SYNPO2	0	genome.wustl.edu	37	4	119952720	119952720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	119952720	119952720	G	A	SNP	SYNPO2	ENST00000504178	human	ensembl	58_37c	+1	known	missense	c.2644	p.A882T	0.402	NULL	superfamily_PDZ domain-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TIMM22	0	genome.wustl.edu	37	17	900427	900427	+	Silent	SNP	A	G	G	rs143321619	byFrequency	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	900427	900427	A	G	SNP	TIMM22	NM_013337.2	human	genbank	58_37c	+1	provisional	silent	c.45	p.T15	0.071	NULL	HMMPfam_Tim17	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577061	7577064	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	CTTT	CTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	7577061	7577064	CTTT	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.877_874	p.K292fs	0.324:0.411:0.904:0.987	NULL	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TROVE2	0	genome.wustl.edu	37	1	193054120	193054121	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	193054120	193054121	-	A	INS	TROVE2	ENST00000367443	human	ensembl	58_37c	+1	known	frame_shift_ins	c.1545_1546	p.T515fs	0.000:0.005	NULL	HMMPfam_TROVE	-	no_errors
USP29	0	genome.wustl.edu	37	19	57641241	57641241	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	57641241	57641241	G	T	SNP	USP29	NM_020903.2	human	genbank	58_37c	+1	validated	nonsense	c.1198	p.E400*	0.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
VPS13D	0	genome.wustl.edu	37	1	12368636	12368636	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	12368636	12368636	A	T	SNP	VPS13D	ENST00000011700	human	ensembl	58_37c	+1	known	missense	c.3056	p.Q1019L	0.988	NULL	HMMPfam_UBA,superfamily_UBA-like,HMMPfam_DUF1162,HMMSmart_SM00165	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZBTB9	0	genome.wustl.edu	37	6	33424124	33424124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	6	33424124	33424124	G	A	SNP	ZBTB9	NM_152735.3	human	genbank	58_37c	+1	validated	missense	c.1247	p.C416Y	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF251	0	genome.wustl.edu	37	8	145947814	145947814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	145947814	145947814	C	T	SNP	ZNF251	NM_138367.1	human	genbank	58_37c	-1	validated	missense	c.1231	p.G411S	0.997	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
