Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLCH2	9651	broad.mit.edu	37	1	2422699	2422699	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:2422699G>A	uc001aji.1	+	11	1858	c.1584G>A	c.(1582-1584)TCG>TCA	p.S528S	PLCH2_uc010nyz.1_Silent_p.S316S|PLCH2_uc009vle.1_Silent_p.S316S|PLCH2_uc001ajj.1_Silent_p.S316S|PLCH2_uc001ajk.1_Silent_p.S316S	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	528					intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		TCAAAGAGTCGAAGATTCGGG	0.547000													26	31					0	0	0.004656	0	0
CCDC27	148870	broad.mit.edu	37	1	3673334	3673334	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:3673334C>T	uc001akv.2	+	4	672	c.591C>T	c.(589-591)TTC>TTT	p.F197F		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	197										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		TCTGCGAGTTCGATTACTTGC	0.567000													27	60					0	0	0.004289	0	0
PTCHD2	57540	broad.mit.edu	37	1	11594528	11594528	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:11594528G>A	uc001ash.3	+	18	3604	c.3466G>A	c.(3466-3468)GAG>AAG	p.E1156K		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1156	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GGCCTTGCCCGAGGGCTCAGT	0.627000													25	35					0	0	0.004656	0	0
LOC649330	649330	broad.mit.edu	37	1	12907317	12907317	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:12907317C>T	uc009vno.2	-	1	921	c.826G>A	c.(826-828)GGG>AGG	p.G276R	HNRNPCL1_uc010obf.1_Missense_Mutation_p.E276K	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	276							nucleic acid binding|nucleotide binding				0						TCCTCAGCCTCTTTTTCATCA	0.488000													42	122					0	0	0.014410	0	0
PRAMEF22	653606	broad.mit.edu	37	1	13036666	13036666	+	Silent	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:13036666T>C	uc009vnq.1	+	2	738	c.738T>C	c.(736-738)CGT>CGC	p.R246R	PRAMEF5_uc001aur.2_Intron	NM_001100631	NP_001094101	A3QJZ6	PRA22_HUMAN	PRAME family member 22	246											0						ATGGCTGTCGTTACCTGCTAA	0.473000													30	136					0	0	0.004878	0	0
LOC440563	440563	broad.mit.edu	37	1	13183278	13183279	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:13183278_13183279CC>TT	uc010obg.1	-	1	689_690	c.594_595GG>AA	c.(592-597)CTGGAA>CTAAAA	p.E199K		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	199						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TCCAGGTTTTCCAGGAGAGAAT	0.441000													37	255					0	0	0.004672	0	0
FBLIM1	54751	broad.mit.edu	37	1	16101263	16101263	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:16101263G>A	uc001axd.1	+	8	1305	c.862G>A	c.(862-864)GAG>AAG	p.E288K	FBLIM1_uc001axe.1_Missense_Mutation_p.E288K|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.E288K|FBLIM1_uc001axh.1_Missense_Mutation_p.E191K|FBLIM1_uc001axi.1_Missense_Mutation_p.E191K	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	288	PLEKHC1-binding.|LIM zinc-binding 2.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		CAGCCAGAACGAGGTGTACTG	0.632000													48	135					0	0	0.014410	0	0
SPEN	23013	broad.mit.edu	37	1	16257505	16257505	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:16257505C>T	uc001axk.1	+	11	4974	c.4770C>T	c.(4768-4770)CTC>CTT	p.L1590L	SPEN_uc010obp.1_Silent_p.L1549L	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1590					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TTATGGAGCTCACACGGATGC	0.443000													13	24					0	0	0.001855	0	0
CLCNKA	1187	broad.mit.edu	37	1	16350376	16350376	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:16350376C>T	uc001axu.2	+	3	262	c.182C>T	c.(181-183)GCC>GTC	p.A61V	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.A61V|CLCNKA_uc010obw.1_Missense_Mutation_p.A61V|CLCNKB_uc001axw.3_Intron	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	61	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	GTGCTCATGGCCCTGGTCAGC	0.602000													36	53					0	0	0.007835	0	0
SPATA21	374955	broad.mit.edu	37	1	16736383	16736383	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:16736383C>T	uc001ayn.2	-	6	783	c.300G>A	c.(298-300)CGG>CGA	p.R100R	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Silent_p.R77R	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	100							calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		TCGAGGCTCTCCGATGGGAGG	0.662000													20	29					0	0	0.014323	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													3	38					0	0	0.004672	0	0
MST1P2	11209	broad.mit.edu	37	1	16974955	16974955	+	RNA	SNP	A	G	G	rs149751487	by1000genomes	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:16974955A>G	uc010och.1	+	7		c.1415A>G			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GCATGCTTTGATGTCTGGGAC	0.657000													4	95					0	0	0.001168	0	0
C1QC	714	broad.mit.edu	37	1	22974088	22974088	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:22974088C>T	uc001bgc.3	+	3	653	c.550C>T	c.(550-552)CGC>TGC	p.R184C	C1QC_uc001bga.3_Missense_Mutation_p.R184C|C1QC_uc001bgb.2_Missense_Mutation_p.R184C	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	184	C1q.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GCTGCTGTACCGCAGCGGCGT	0.582000													35	86					0	0	0.005524	0	0
CNKSR1	10256	broad.mit.edu	37	1	26514795	26514795	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:26514795G>A	uc001bln.3	+	17	1604	c.1546G>A	c.(1546-1548)GAA>AAA	p.E516K	CNKSR1_uc001blm.3_Missense_Mutation_p.E509K|CNKSR1_uc009vsd.2_Missense_Mutation_p.E251K|CNKSR1_uc009vse.2_Missense_Mutation_p.E251K|CNKSR1_uc001blo.2_Missense_Mutation_p.E251K|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	516					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		ACCCCGAGAGGAAGGTAGGTG	0.587000													19	49					0	0	0.003330	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26873382	26873382	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:26873382T>C	uc001bmr.1	+	3	296	c.133T>C	c.(133-135)TCC>CCC	p.S45P	RPS6KA1_uc010ofe.1_Intron|RPS6KA1_uc010off.1_Missense_Mutation_p.S29P|RPS6KA1_uc001bms.1_Missense_Mutation_p.S54P|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	45					axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		CAAGGAGATCTCCATCACGCA	0.597000													15	25					0	0	0.008871	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33956962	33956962	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:33956962C>T	uc001bxj.3	+	6	1271	c.1104C>T	c.(1102-1104)GGC>GGT	p.G368G	ZSCAN20_uc001bxk.2_Silent_p.G314G|ZSCAN20_uc009vui.2_Silent_p.G368G	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	368					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGGCAAGGGGCTTCCTGCGGA	0.537000													34	109					0	0	0.009718	0	0
TEKT2	27285	broad.mit.edu	37	1	36550626	36550626	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:36550626C>T	uc001bzr.2	+	2	231	c.104C>T	c.(103-105)TCC>TTC	p.S35F	TEKT2_uc001bzs.2_5'UTR	NM_014466	NP_055281	Q9UIF3	TEKT2_HUMAN	tektin 2	35					cell projection organization|microtubule cytoskeleton organization	actin cytoskeleton|cilium axoneme|flagellar axoneme|focal adhesion|microtubule|nucleolus					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CGAGATGCTTCCCATCAGATC	0.627000													23	45					0	0	0.002780	0	0
SF3A3	10946	broad.mit.edu	37	1	38433717	38433717	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:38433717G>A	uc001cci.2	-	15	1495	c.1371C>T	c.(1369-1371)TCC>TCT	p.S457S	SF3A3_uc010oik.1_Silent_p.S404S	NM_006802	NP_006793	Q12874	SF3A3_HUMAN	splicing factor 3a, subunit 3	457					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nuclear speck	nucleic acid binding|protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CTTACTTACAGGAGACAGCAT	0.453000													83	199					0	0	0.014410	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45484800	45484800	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:45484800G>A	uc001cnd.2	-	14	3112	c.2884C>T	c.(2884-2886)CCA>TCA	p.P962S		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	962							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					CAGCTCTGTGGATCCTTCATA	0.542000											OREG0013450	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	60					0	0	0.010818	0	0
MAST2	23139	broad.mit.edu	37	1	46496333	46496333	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:46496333C>T	uc001cov.2	+	22	2891	c.2608C>T	c.(2608-2610)CCG>TCG	p.P870S	MAST2_uc001cow.2_Missense_Mutation_p.P870S|MAST2_uc001coy.1_Missense_Mutation_p.P544S|MAST2_uc001coz.1_Missense_Mutation_p.P755S|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	870					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GACACCACCCCCGACCAAGCG	0.652000													5	16					0	0	0.000602	0	0
STIL	6491	broad.mit.edu	37	1	47737845	47737845	+	Silent	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:47737845T>C	uc001crc.1	-	13	2441	c.2286A>G	c.(2284-2286)ACA>ACG	p.T762T	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Silent_p.T715T|STIL_uc010omo.1_Silent_p.T762T|STIL_uc001crd.1_Silent_p.T762T|STIL_uc001cre.1_Silent_p.T762T|STIL_uc001crf.1_Silent_p.T375T|STIL_uc001crg.1_Silent_p.T715T	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	762	PIN1-binding (By similarity).				cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				CAGCTTGCACTGTGTCTTCAA	0.448000													3	81					0	0	0.009096	0	0
C1orf175	374977	broad.mit.edu	37	1	55148437	55148437	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:55148437G>A	uc010ooe.1	+	14	2814	c.2490G>A	c.(2488-2490)AAG>AAA	p.K830K	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Silent_p.K398K|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.K348K|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Silent_p.K830K|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_Intron|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.K32K	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	830						integral to membrane	binding				0						CCGTCACCAAGGAGGGCCGGG	0.617000													13	30					0	0	0.004990	0	0
ROR1	4919	broad.mit.edu	37	1	64603123	64603123	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:64603123G>A	uc001dbj.2	+	5	953	c.554G>A	c.(553-555)CGC>CAC	p.R185H	ROR1_uc001dbi.3_Missense_Mutation_p.R185H|uc001dbl.2_Intron	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	185	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						ATTGGCAACCGCACCGTCTAT	0.398000													45	89					0	0	0.014410	0	0
WLS	79971	broad.mit.edu	37	1	68615937	68615937	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:68615937G>A	uc001def.1	-	6	1177	c.906C>T	c.(904-906)ATC>ATT	p.I302I	uc001deb.1_Intron|uc001dec.1_Intron|WLS_uc001dee.2_Silent_p.I300I|WLS_uc001deg.1_Silent_p.I211I|WLS_uc009wbf.1_Silent_p.I257I	NM_024911	NP_079187	Q5T9L3	WLS_HUMAN	G protein-coupled receptor 177 isoform 1	302	Lumenal (Potential).				multicellular organismal development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Wnt receptor signaling pathway	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	signal transducer activity				0						TGCCCTGTCGGATGTCACCAA	0.512000													69	134					0	0	0.014410	0	0
LRRC7	57554	broad.mit.edu	37	1	70494040	70494040	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:70494040G>A	uc001dep.2	+	16	1897	c.1867G>A	c.(1867-1869)GAG>AAG	p.E623K	LRRC7_uc009wbg.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	623						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGCCCCAAAGGAGATTACAGT	0.393000													13	26					0	0	0.004007	0	0
C1orf173	127254	broad.mit.edu	37	1	75037752	75037752	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:75037752C>T	uc001dgg.2	-	14	3861	c.3642G>A	c.(3640-3642)GGG>GGA	p.G1214G		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1214	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTGCTAAGGCCCCCTCTCCAT	0.602000													17	66					0	0	0.004990	0	0
CLCA4	22802	broad.mit.edu	37	1	87033125	87033125	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:87033125C>T	uc009wcs.2	+	7	1017	c.973C>T	c.(973-975)CGA>TGA	p.R325*	CLCA4_uc009wct.2_Nonsense_Mutation_p.R88*|CLCA4_uc009wcu.2_Nonsense_Mutation_p.R145*	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	325	VWFA.					apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		CCGCCTAAATCGAATGAATCA	0.363000													20	49					0	0	0.002780	0	0
CLCA3P	9629	broad.mit.edu	37	1	87104685	87104685	+	RNA	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:87104685G>A	uc010osh.1	+	5		c.720G>A				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						AGACTGCCAAGGAATCCATTG	0.408000													25	68					0	0	0.010818	0	0
ABCA4	24	broad.mit.edu	37	1	94528687	94528687	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:94528687T>C	uc001dqh.2	-	12	1845	c.1741A>G	c.(1741-1743)ACC>GCC	p.T581A	ABCA4_uc010otn.1_Missense_Mutation_p.T581A	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	581	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		ATCTTATTGGTTTTCTCCACC	0.473000													87	175					0	0	0.014410	0	0
CDC14A	8556	broad.mit.edu	37	1	100961573	100961573	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:100961573A>C	uc001dtg.3	+	13	1754	c.1266A>C	c.(1264-1266)AAA>AAC	p.K422N	CDC14A_uc009web.2_RNA|CDC14A_uc010oui.1_Missense_Mutation_p.K364N|CDC14A_uc001dtf.2_Missense_Mutation_p.K422N|CDC14A_uc009wed.1_Missense_Mutation_p.K129N|CDC14A_uc009wee.2_Missense_Mutation_p.K422N	NM_003672	NP_003663	Q9UNH5	CC14A_HUMAN	CDC14 homolog A isoform 1	422					cell cycle|cell division|cell proliferation	centrosome|nucleus|spindle	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			large_intestine(1)	1		all_epithelial(167;3.71e-06)|all_lung(203;0.00097)|Lung NSC(277;0.001)		Epithelial(280;0.0676)|all cancers(265;0.127)|COAD - Colon adenocarcinoma(174;0.201)|Lung(183;0.227)|Colorectal(144;0.241)		ATGATACAAAAGGACATCCAA	0.433000													35	88					0	0	0.010771	0	0
COL11A1	1301	broad.mit.edu	37	1	103388915	103388915	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:103388915C>T	uc001dul.2	-	47	3949	c.3631G>A	c.(3631-3633)GAA>AAA	p.E1211K	COL11A1_uc001duk.2_Missense_Mutation_p.E407K|COL11A1_uc001dum.2_Missense_Mutation_p.E1223K|COL11A1_uc001dun.2_Missense_Mutation_p.E1172K|COL11A1_uc009weh.2_Missense_Mutation_p.E1095K	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1211	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCCCCATTTTCACCTTTTTCA	0.343000													4	25					0	0	0.000602	0	0
KCNA2	3737	broad.mit.edu	37	1	111146446	111146446	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:111146446G>A	uc001dzu.2	-	2	1455	c.959C>T	c.(958-960)ACC>ATC	p.T320I	KCNA2_uc009wfv.1_Intron|KCNA2_uc009wfw.2_Missense_Mutation_p.T320I	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	320						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		GGCTTTGAGGGTCTGACCTAG	0.483000													16	48					0	0	0.004990	0	0
SYCP1	6847	broad.mit.edu	37	1	115524020	115524020	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:115524020C>T	uc001efr.2	+	29	2655	c.2446C>T	c.(2446-2448)CCT>TCT	p.P816S	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.P816S|SYCP1_uc009wgw.2_Missense_Mutation_p.P791S	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	816					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TAAAGCAGTTCCTTCACAAAC	0.323000													34	84					0	0	0.003755	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144952211	144952211	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:144952211G>A	uc001elw.3	-	4	799	c.508C>T	c.(508-510)CAG>TAG	p.Q170*	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Nonsense_Mutation_p.Q236*|PDE4DIP_uc001emc.1_Nonsense_Mutation_p.Q170*|PDE4DIP_uc001emd.1_Nonsense_Mutation_p.Q170*|PDE4DIP_uc001emg.1_Nonsense_Mutation_p.Q170*|PDE4DIP_uc001emh.2_Nonsense_Mutation_p.Q307*	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	170	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTGTCCCTCTGGGCCAGGGCC	0.522000			T	PDGFRB	MPD								12	147					0	0	0.006122	0	0
C1orf56	54964	broad.mit.edu	37	1	151020721	151020721	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:151020721G>A	uc001ewn.2	+	1	463	c.398G>A	c.(397-399)GGG>GAG	p.G133E		NM_017860	NP_060330	Q9BUN1	CA056_HUMAN	hypothetical protein LOC54964 precursor	133						extracellular region					0	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			AATACAGCGGGGAGTTCCAGC	0.557000													21	51					0	0	0.010504	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059401	152059401	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:152059401C>T	uc001ezo.1	-	3	822	c.757G>A	c.(757-759)GAA>AAA	p.E253K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	253							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CCTTCCTGTTCTCCAAACTGG	0.453000													46	114					0	0	0.014410	0	0
RPTN	126638	broad.mit.edu	37	1	152130351	152130351	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:152130351C>T	uc001ezs.1	-	2	80	c.15G>A	c.(13-15)CTG>CTA	p.L5L		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	5	S-100-like (By similarity).					proteinaceous extracellular matrix	calcium ion binding				0						GTATGCTATTCAGGAGTTGAG	0.443000													38	65					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152326000	152326000	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:152326000C>T	uc001ezw.3	-	3	4335	c.4262G>A	c.(4261-4263)GGA>GAA	p.G1421E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1421							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGGCCAGATCCCCTTCTTCC	0.527000													109	249					0	0	0.014410	0	0
ASH1L	55870	broad.mit.edu	37	1	155348153	155348153	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:155348153G>A	uc009wqq.2	-	10	6746	c.6266C>T	c.(6265-6267)TCT>TTT	p.S2089F	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.S2084F	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2089					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TTCGTAACCAGAAAGGGGTTT	0.408000													44	120					0	0	0.014410	0	0
ASH1L	55870	broad.mit.edu	37	1	155450714	155450714	+	Silent	SNP	G	A	A	rs146736660		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:155450714G>A	uc009wqq.2	-	3	2427	c.1947C>T	c.(1945-1947)TCC>TCT	p.S649S	ASH1L_uc001fkt.2_Silent_p.S649S|ASH1L_uc009wqr.1_Silent_p.S649S	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	649					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TTTTTCCAAGGGAAGAGCTTA	0.318000													25	42					0	0	0.003954	0	0
C1orf61	10485	broad.mit.edu	37	1	156386625	156386625	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:156386625G>A	uc001fou.1	-	3	124	c.7C>T	c.(7-9)CTG>TTG	p.L3L	C1orf61_uc001fov.1_Intron|C1orf61_uc001fow.1_Intron|C1orf61_uc001fox.1_Intron|C1orf61_uc001foy.1_Intron	NM_006365	NP_006356	Q13536	CROC4_HUMAN	transcriptional activator of the c-fos promoter	3						nucleus				skin(1)	1	Hepatocellular(266;0.158)					TCCTCAGTCAGGAACATGCCA	0.418000													42	76					0	0	0.009718	0	0
NTRK1	4914	broad.mit.edu	37	1	156844747	156844747	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:156844747C>T	uc001fqh.1	+	11	1357	c.1301C>T	c.(1300-1302)ACG>ATG	p.T434M	NTRK1_uc001fqf.1_Missense_Mutation_p.T398M|NTRK1_uc009wsi.1_Missense_Mutation_p.T133M|NTRK1_uc001fqi.1_Missense_Mutation_p.T428M|NTRK1_uc009wsk.1_Missense_Mutation_p.T428M	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	434	Helical; (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	TTCCTTTCTACGCTGCTCCTT	0.582000			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			42	140					0	0	0.014410	0	0
PEAR1	375033	broad.mit.edu	37	1	156874639	156874639	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:156874639G>A	uc001fqj.1	+	3	317	c.201G>A	c.(199-201)CAG>CAA	p.Q67Q	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	67	EMI.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTTGCCCCCAGCCCACGTGAG	0.652000													17	35					0	0	0.007413	0	0
CD1E	913	broad.mit.edu	37	1	158325805	158325805	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:158325805A>G	uc001fse.2	+	4	1053	c.814A>G	c.(814-816)ACC>GCC	p.T272A	CD1E_uc010pid.1_Missense_Mutation_p.T270A|CD1E_uc010pie.1_Missense_Mutation_p.T173A|CD1E_uc010pif.1_Missense_Mutation_p.T83A|CD1E_uc001fsd.2_Intron|CD1E_uc001fsk.2_Missense_Mutation_p.T182A|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Missense_Mutation_p.T83A|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.T272A|CD1E_uc001fry.2_Intron|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Missense_Mutation_p.T83A|CD1E_uc001fsi.2_Intron|CD1E_uc009wsv.2_Missense_Mutation_p.T173A|CD1E_uc001frz.2_Missense_Mutation_p.T182A|CD1E_uc009wsw.2_Missense_Mutation_p.T30A	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	272	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TCTCCGAGCAACCCTGGATGT	0.612000													37	104					0	0	0.006999	0	0
CADM3	57863	broad.mit.edu	37	1	159163792	159163792	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:159163792G>A	uc001ftl.2	+	5	795	c.653G>A	c.(652-654)GGA>GAA	p.G218E	CADM3_uc009wsy.1_Intron|CADM3_uc001ftk.2_Missense_Mutation_p.G252E	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	218	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					TCTCTAAAGGGAGCTGACAGA	0.502000													25	68					0	0	0.006320	0	0
FCER1A	2205	broad.mit.edu	37	1	159275833	159275833	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:159275833C>T	uc001ftq.2	+	5	486	c.387C>T	c.(385-387)TTC>TTT	p.F129F		NM_002001	NP_001992	P12319	FCERA_HUMAN	Fc fragment of IgE, high affinity I, receptor	129	Ig-like 2.|Extracellular (Potential).					integral to plasma membrane				lung(2)|skin(2)|prostate(1)	5	all_hematologic(112;0.0429)				Benzylpenicilloyl Polylysine(DB00895)|Omalizumab(DB00043)	AGCCCCTCTTCCTCAGGTGCC	0.458000													27	58					0	0	0.008361	0	0
TNR	7143	broad.mit.edu	37	1	175365861	175365861	+	Silent	SNP	C	T	T	rs141776089	byFrequency	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:175365861C>T	uc001gkp.1	-	3	1140	c.1059G>A	c.(1057-1059)ACG>ACA	p.T353T	TNR_uc009wwu.1_Silent_p.T353T|TNR_uc010pmz.1_Intron	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	353	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCACATATTCCGTCACTGCCA	0.617000													43	81					0	0	0.014410	0	0
FAM5B	57795	broad.mit.edu	37	1	177250488	177250488	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:177250488C>T	uc001glf.2	+	8	2488	c.2176C>T	c.(2176-2178)CGG>TGG	p.R726W	FAM5B_uc001glg.2_Missense_Mutation_p.R621W	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	726						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GCTCAGGGACCGGGTGAACCA	0.537000													24	84					0	0	0.004656	0	0
CACNA1E	777	broad.mit.edu	37	1	181741281	181741281	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:181741281C>T	uc001gow.2	+	37	5218	c.5053C>T	c.(5053-5055)CCA>TCA	p.P1685S	CACNA1E_uc009wxs.2_Missense_Mutation_p.P1573S|CACNA1E_uc001gox.1_Missense_Mutation_p.P911S|CACNA1E_uc009wxt.2_Missense_Mutation_p.P911S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1685	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CACCACCGCACCATCAGGGCA	0.552000													61	111					0	0	0.014410	0	0
LAMC2	3918	broad.mit.edu	37	1	183190096	183190096	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:183190096G>A	uc001gqa.2	+	5	954	c.640G>A	c.(640-642)GAT>AAT	p.D214N	LAMC2_uc001gpz.3_Missense_Mutation_p.D214N|LAMC2_uc010poa.1_5'UTR	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	214	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CTTTCATCAAGGTAAAGCCTT	0.453000													11	38					0	0	0.002450	0	0
PRG4	10216	broad.mit.edu	37	1	186276961	186276961	+	Missense_Mutation	SNP	A	C	C	rs145338869	byFrequency	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:186276961A>C	uc001gru.3	+	7	2161	c.2110A>C	c.(2110-2112)ACT>CCT	p.T704P	PRG4_uc001grt.3_Missense_Mutation_p.T663P|PRG4_uc009wyl.2_Missense_Mutation_p.T611P|PRG4_uc009wym.2_Missense_Mutation_p.T570P|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	704	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|42; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCCTAAGGAGACTGCTCCAAC	0.597000													3	122					0	0	0.001168	0	0
TPR	7175	broad.mit.edu	37	1	186302359	186302359	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:186302359G>A	uc001grv.2	-	37	5647	c.5350C>T	c.(5350-5352)CCT>TCT	p.P1784S		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1784					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TCAATCTGAGGATGACTCTGT	0.438000			T	NTRK1	papillary thyroid								32	99					0	0	0.004878	0	0
FAM5C	339479	broad.mit.edu	37	1	190067932	190067932	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:190067932C>A	uc001gse.1	-	8	1749	c.1517G>T	c.(1516-1518)AGA>ATA	p.R506I	FAM5C_uc010pot.1_Missense_Mutation_p.R404I	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	506						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TTCTATTCGTCTGTCCGTTTT	0.488000													37	89					5.59293e-11	5.67321e-11	0.006999	1	0
RGS18	64407	broad.mit.edu	37	1	192153620	192153620	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:192153620G>A	uc001gsg.2	+	5	820	c.644G>A	c.(643-645)CGA>CAA	p.R215Q		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	215					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						CTTAGGAGACGATCACGCTCA	0.358000													33	54					0	0	0.006999	0	0
IGFN1	91156	broad.mit.edu	37	1	201186506	201186506	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:201186506C>T	uc001gwc.2	+	6	1939	c.1167C>T	c.(1165-1167)AGC>AGT	p.S389S	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GCCCCGGCAGCGCCCACATCC	0.662000													35	56					0	0	0.010771	0	0
C1orf157	284573	broad.mit.edu	37	1	204009438	204009438	+	RNA	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:204009438G>A	uc001haj.2	-	2		c.258C>T			C1orf157_uc001hak.2_RNA|C1orf157_uc010pqo.1_RNA	NR_027902				Homo sapiens cDNA FLJ40343 fis, clone TESTI2032774.												0	all_cancers(21;0.083)|Breast(84;0.193)|all_epithelial(62;0.21)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0754)|Kidney(21;0.0934)|Epithelial(59;0.233)			TGTGTATGGAGACTGTAGGGG	0.443000													6	13					0	0	0.004482	0	0
SLC26A9	115019	broad.mit.edu	37	1	205896384	205896384	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:205896384C>T	uc001hdq.2	-	11	1362	c.1248G>A	c.(1246-1248)ATG>ATA	p.M416I	SLC26A9_uc001hdo.2_Missense_Mutation_p.M84I|SLC26A9_uc001hdp.2_Missense_Mutation_p.M416I	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	416	Helical; (Potential).					integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			GCATGGTGATCATCACCACCA	0.463000													32	104					0	0	0.004289	0	0
SMYD2	56950	broad.mit.edu	37	1	214492290	214492290	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:214492290C>T	uc010ptx.1	+	5	531	c.498C>T	c.(496-498)TTC>TTT	p.F166F	SMYD2_uc009xdj.2_Silent_p.F74F|SMYD2_uc010ptw.1_RNA|SMYD2_uc009xdl.1_RNA	NM_020197	NP_064582	Q9NRG4	SMYD2_HUMAN	SET and MYND domain containing 2	166	SET.				negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of DNA damage response, signal transduction by p53 class mediator|transcription, DNA-dependent	cytosol|nucleus	histone methyltransferase activity (H3-K36 specific)|p53 binding|RNA polymerase II core binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0122)|all cancers(67;0.0209)|GBM - Glioblastoma multiforme(131;0.106)|Epithelial(68;0.144)		ATCTCGGATTCCCTGACAATG	0.473000													30	77					0	0	0.003271	0	0
SMYD2	56950	broad.mit.edu	37	1	214503535	214503535	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:214503535C>T	uc010ptx.1	+	8	763	c.730C>T	c.(730-732)CTG>TTG	p.L244L	SMYD2_uc009xdj.2_Silent_p.L152L|SMYD2_uc010ptw.1_RNA|SMYD2_uc009xdl.1_RNA	NM_020197	NP_064582	Q9NRG4	SMYD2_HUMAN	SET and MYND domain containing 2	244	SET.				negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|regulation of DNA damage response, signal transduction by p53 class mediator|transcription, DNA-dependent	cytosol|nucleus	histone methyltransferase activity (H3-K36 specific)|p53 binding|RNA polymerase II core binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0122)|all cancers(67;0.0209)|GBM - Glioblastoma multiforme(131;0.106)|Epithelial(68;0.144)		TATTGATCTCCTGTACCCAAC	0.433000													6	37					0	0	0.003080	0	0
USH2A	7399	broad.mit.edu	37	1	216251555	216251555	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:216251555C>T	uc001hku.1	-	27	5835	c.5448G>A	c.(5446-5448)GTG>GTA	p.V1816V		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1816	Laminin G-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCAGTCCATTCACACTTGCTG	0.443000										HNSCC(13;0.011)			52	132					0	0	0.014410	0	0
LIN9	286826	broad.mit.edu	37	1	226421194	226421194	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:226421194C>T	uc001hqa.2	-	13	1634	c.1324G>A	c.(1324-1326)GAT>AAT	p.D442N	LIN9_uc001hqb.2_Missense_Mutation_p.D407N|LIN9_uc001hqc.2_Missense_Mutation_p.D374N|LIN9_uc009xel.1_Missense_Mutation_p.D407N	NM_173083	NP_775106	Q5TKA1	LIN9_HUMAN	lin-9 homolog	426					cell cycle|DNA replication	nucleoplasm					0	Breast(184;0.158)			GBM - Glioblastoma multiforme(131;0.131)		GTTGGCTGATCTGCAGGCTGG	0.473000													43	73					0	0	0.014410	0	0
PCNXL2	80003	broad.mit.edu	37	1	233296119	233296119	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:233296119C>T	uc001hvl.2	-	19	3662	c.3427G>A	c.(3427-3429)GTG>ATG	p.V1143M	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1143	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TGAGGGAGCACGTAATGTGTT	0.468000													24	44					0	0	0.004656	0	0
RYR2	6262	broad.mit.edu	37	1	237774281	237774281	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:237774281G>A	uc001hyl.1	+	36	5023	c.4903G>A	c.(4903-4905)GAA>AAA	p.E1635K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1635	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TATCCCTGAGGAAAACAGGTC	0.542000													6	12					0	0	0.001168	0	0
ZP4	57829	broad.mit.edu	37	1	238048799	238048799	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:238048799G>A	uc001hym.2	-	8	1052	c.1052C>T	c.(1051-1053)TCC>TTC	p.S351F	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	351	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GTGAAGGATGGAGACCTCCAC	0.532000													14	44					0	0	0.004990	0	0
SDCCAG8	10806	broad.mit.edu	37	1	243542101	243542101	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:243542101A>G	uc001hzw.2	+	13	1708	c.1552A>G	c.(1552-1554)AGA>GGA	p.R518G	SDCCAG8_uc010pyk.1_Missense_Mutation_p.R373G|SDCCAG8_uc010pyl.1_Missense_Mutation_p.R330G|SDCCAG8_uc001hzx.2_Missense_Mutation_p.R330G	NM_006642	NP_006633	Q86SQ7	SDCG8_HUMAN	serologically defined colon cancer antigen 8	518	Potential.|Sufficient for homodimerization (By similarity).				establishment of cell polarity|G2/M transition of mitotic cell cycle|tube formation	cell-cell junction|centriole|cytosol	protein binding				0	all_cancers(71;0.000545)|all_epithelial(71;0.000509)|all_lung(81;0.0821)|Ovarian(71;0.0919)|all_neural(11;0.101)|Breast(184;0.218)	all_cancers(173;0.00395)	all cancers(7;1.58e-07)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00392)	COAD - Colon adenocarcinoma(196;0.145)		AGCCCTGGCCAGAGAGGAGTG	0.498000													23	84					0	0	0.003954	0	0
OR2T12	127064	broad.mit.edu	37	1	248458257	248458257	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:248458257G>A	uc010pzj.1	-	1	624	c.624C>T	c.(622-624)CCC>CCT	p.P208P		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			TGAGGGAAAAGGGGACCAGGA	0.547000													27	59					0	0	0.008361	0	0
OR2T5	401993	broad.mit.edu	37	1	248652022	248652022	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:248652022G>A	uc001iem.1	+	1	133	c.133G>A	c.(133-135)GGA>AGA	p.G45R		NM_001004697	NP_001004697	Q6IEZ7	OR2T5_HUMAN	olfactory receptor, family 2, subfamily T,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGCGTTGTCTGGAAATGCTGT	0.468000													24	38					0	0	0.014410	0	0
OR14I1	401994	broad.mit.edu	37	1	248844738	248844738	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:248844738G>A	uc001ieu.1	-	1	868	c.868C>T	c.(868-870)CTT>TTT	p.L290F		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTATTCCTAAGACTATATATG	0.388000													22	60					0	0	0.004656	0	0
ADARB2	105	broad.mit.edu	37	10	1262994	1262994	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:1262994C>T	uc009xhq.2	-	7	1953	c.1579G>A	c.(1579-1581)GAA>AAA	p.E527K		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	527	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		ACCGTCCCTTCCCCGGACTCG	0.647000													4	7					0	0	0.009096	0	0
OLAH	55301	broad.mit.edu	37	10	15103833	15103833	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:15103833G>A	uc001inu.2	+	4	528	c.274G>A	c.(274-276)GAT>AAT	p.D92N	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.D145N	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	92					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						AGTCATCCAGGATAAACCATT	0.388000													53	91					0	0	0.014410	0	0
ANUBL1	93550	broad.mit.edu	37	10	46122313	46122313	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:46122313C>A	uc001jcp.3	-	7	1200	c.958G>T	c.(958-960)GAT>TAT	p.D320Y	ANUBL1_uc001jcl.3_5'UTR|ANUBL1_uc001jcm.3_Missense_Mutation_p.D320Y|ANUBL1_uc009xmu.2_Missense_Mutation_p.D246Y|ANUBL1_uc001jcn.3_Missense_Mutation_p.D246Y|ANUBL1_uc001jco.3_Intron	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	320							zinc ion binding				0						CAGCTATTATCTTCCTTAAGA	0.433000													30	28					5.45727e-16	5.55332e-16	0.008361	1	0
FRMPD2	143162	broad.mit.edu	37	10	49440299	49440299	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:49440299C>T	uc001jgi.2	-	10	1134	c.1027G>A	c.(1027-1029)GAC>AAC	p.D343N	FRMPD2_uc001jgh.2_Missense_Mutation_p.D312N|FRMPD2_uc001jgj.2_Missense_Mutation_p.D321N	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	343	FERM.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		ACACAGAGGTCCCTGAGAGCC	0.363000													15	18					0	0	0.004007	0	0
PRKG1	5592	broad.mit.edu	37	10	54048502	54048502	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:54048502C>T	uc001jjm.2	+	15	1875	c.1681C>T	c.(1681-1683)CCA>TCA	p.P561S	PRKG1_uc001jjo.2_Missense_Mutation_p.P576S|PRKG1_uc009xow.1_Missense_Mutation_p.P279S|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	561	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		TTTCTCAGGCCCAGATCCTAT	0.353000													33	43					0	0	0.008740	0	0
PCDH15	65217	broad.mit.edu	37	10	55782888	55782888	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:55782888G>A	uc001jju.1	-	19	2685	c.2290C>T	c.(2290-2292)CGT>TGT	p.R764C	PCDH15_uc010qhq.1_Missense_Mutation_p.R769C|PCDH15_uc010qhr.1_Missense_Mutation_p.R764C|PCDH15_uc010qhs.1_Missense_Mutation_p.R776C|PCDH15_uc010qht.1_Missense_Mutation_p.R771C|PCDH15_uc010qhu.1_Missense_Mutation_p.R764C|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R764C|PCDH15_uc010qhw.1_Missense_Mutation_p.R727C|PCDH15_uc010qhx.1_Missense_Mutation_p.R693C|PCDH15_uc010qhy.1_Missense_Mutation_p.R769C|PCDH15_uc010qhz.1_Missense_Mutation_p.R764C|PCDH15_uc010qia.1_Missense_Mutation_p.R742C|PCDH15_uc010qib.1_Missense_Mutation_p.R742C|PCDH15_uc001jjw.2_Missense_Mutation_p.R764C	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	764	Extracellular (Potential).|Cadherin 7.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GATGTGATACGAAAAAGATTA	0.368000										HNSCC(58;0.16)			18	24					0	0	0.008871	0	0
ANK3	288	broad.mit.edu	37	10	61832907	61832907	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:61832907C>T	uc001jky.2	-	37	7924	c.7732G>A	c.(7732-7734)GAC>AAC	p.D2578N	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2578					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ACAGTCCTGTCCACCCTATCT	0.423000													3	68					0	0	0.009096	0	0
ARID5B	84159	broad.mit.edu	37	10	63851859	63851859	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:63851859C>T	uc001jlt.1	+	10	2663	c.2637C>T	c.(2635-2637)CTC>CTT	p.L879L		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	879					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					AAGAAAAGCTCCATGTAAATT	0.478000													21	33					0	0	0.002780	0	0
DDX50	79009	broad.mit.edu	37	10	70695789	70695789	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:70695789C>T	uc001jou.2	+	11	1656	c.1549C>T	c.(1549-1551)CCT>TCT	p.P517S	DDX50_uc010qjc.1_Missense_Mutation_p.P517S	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	517	Helicase C-terminal.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						TGTAGGTGTTCCTTCTACAAT	0.289000													19	23					0	0	0.012319	0	0
CDH23	64072	broad.mit.edu	37	10	73550072	73550072	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:73550072C>T	uc001jrx.3	+	44	6328	c.5951C>T	c.(5950-5952)CCC>CTC	p.P1984L		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1984	Cadherin 19.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CTCAATGGGCCCATCCTGGCC	0.647000													12	24					0	0	0.013537	0	0
DLG5	9231	broad.mit.edu	37	10	79576333	79576333	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:79576333G>A	uc001jzk.2	-	20	4071	c.4001C>T	c.(4000-4002)TCC>TTC	p.S1334F	DLG5_uc001jzi.2_Missense_Mutation_p.S89F|DLG5_uc001jzj.2_Missense_Mutation_p.S749F|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.S938F	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1334					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CTCCCCGAGGGACGCGGGGTT	0.627000													38	50					0	0	0.010771	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98363745	98363745	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:98363745C>T	uc001kmq.2	-	15	2360	c.2232G>A	c.(2230-2232)GGG>GGA	p.G744G	PIK3AP1_uc001kmo.2_Silent_p.G343G|PIK3AP1_uc001kmp.2_Silent_p.G566G	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	744						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		CCTCGTTGTCCCCTTCCATCC	0.478000													3	10					0	0	0.004672	0	0
CRTAC1	55118	broad.mit.edu	37	10	99664443	99664443	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:99664443C>T	uc001kou.1	-	7	1335	c.979G>A	c.(979-981)GGG>AGG	p.G327R	CRTAC1_uc001kov.2_Missense_Mutation_p.G316R|CRTAC1_uc001kot.1_Missense_Mutation_p.G117R	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	327	FG-GAP 3; atypical.					proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		CGGACCTTCCCATGGGTGCTC	0.403000													36	42					0	0	0.004289	0	0
DNMBP	23268	broad.mit.edu	37	10	101715388	101715388	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:101715388G>A	uc001kqj.2	-	4	1935	c.1843C>T	c.(1843-1845)CCC>TCC	p.P615S	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	615	Pro-rich.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GGAGTACAGGGACGAGGTGGC	0.567000													15	20					0	0	0.008871	0	0
MGEA5	10724	broad.mit.edu	37	10	103553686	103553686	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:103553686A>G	uc001ktv.2	-	11	2497	c.2054T>C	c.(2053-2055)CTA>CCA	p.L685P	MGEA5_uc001ktu.2_Intron|MGEA5_uc010qqe.1_Missense_Mutation_p.L632P|MGEA5_uc009xws.2_Missense_Mutation_p.L632P	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	685	Histone acetyltransferase activity (By similarity).				glycoprotein catabolic process	cytoplasm|nucleus	histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.207)		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)		CTCTCCTGCTAGACCACCTCT	0.428000													4	159					0	0	0.009096	0	0
VWA2	340706	broad.mit.edu	37	10	116014789	116014789	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:116014789G>A	uc001lbl.1	+	4	564	c.243G>A	c.(241-243)CTG>CTA	p.L81L	VWA2_uc001lbk.1_Silent_p.L81L|VWA2_uc009xyf.1_Intron	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	81	VWFA 1.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		GTGACGGTCTGGACATCAGCC	0.378000													57	62					0	0	0.014410	0	0
KCNK18	338567	broad.mit.edu	37	10	118960782	118960782	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:118960782G>A	uc010qsr.1	+	2	336	c.336G>A	c.(334-336)ACG>ACA	p.T112T		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	112						integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		TCTGCTGCACGGTGTTCAGCA	0.562000													29	39					0	0	0.008361	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122348818	122348818	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:122348818C>T	uc001lev.1	+	7	972	c.620C>T	c.(619-621)TCC>TTC	p.S207F	PPAPDC1A_uc009xzl.1_Missense_Mutation_p.S144F|PPAPDC1A_uc001lew.1_3'UTR|PPAPDC1A_uc001lex.1_Missense_Mutation_p.P57S|PPAPDC1A_uc001ley.1_Missense_Mutation_p.S86F	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	207	Helical; (Potential).				phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		TGCCTAGATTCCTTTGTGGGT	0.443000													44	64					0	0	0.014410	0	0
FGFR2	2263	broad.mit.edu	37	10	123298164	123298164	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:123298164G>A	uc010qtk.1	-	6	1337	c.690C>T	c.(688-690)ACC>ACT	p.T230T	FGFR2_uc010qtg.1_Silent_p.T230T|FGFR2_uc010qth.1_Silent_p.T115T|FGFR2_uc010qti.1_Silent_p.T141T|FGFR2_uc010qtj.1_Silent_p.T230T|FGFR2_uc010qtl.1_Silent_p.T230T|FGFR2_uc010qtm.1_Silent_p.T115T|FGFR2_uc001lfl.3_Silent_p.T230T|FGFR2_uc001lfm.2_Silent_p.T141T|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Silent_p.T249T|FGFR2_uc010qto.1_Silent_p.T134T|FGFR2_uc001lfo.1_Silent_p.T249T|FGFR2_uc010qtp.1_Silent_p.T249T|FGFR2_uc010qtq.1_Silent_p.T249T	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	230	Ig-like C2-type 2.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	CCACTACACAGGTATAATTTC	0.483000		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				25	30					0	0	0.009535	0	0
TACC2	10579	broad.mit.edu	37	10	123843501	123843501	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:123843501G>A	uc001lfv.2	+	4	1846	c.1486G>A	c.(1486-1488)GAG>AAG	p.E496K	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.E496K|TACC2_uc010qtv.1_Missense_Mutation_p.E496K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	496	Pro-rich.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ATCACCCCAGGAGAGGGGAGA	0.597000													48	57					0	0	0.014410	0	0
DMBT1	1755	broad.mit.edu	37	10	124345772	124345772	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:124345772C>T	uc001lgk.1	+	16	1762	c.1656C>T	c.(1654-1656)GGC>GGT	p.G552G	DMBT1_uc001lgl.1_Silent_p.G542G|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Silent_p.G552G|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	552	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TTGGTCAGGGCTCAGGACCCA	0.592000													98	81					0	0	0.014410	0	0
MKI67	4288	broad.mit.edu	37	10	129906685	129906685	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr10:129906685G>A	uc001lke.2	-	13	3614	c.3419C>T	c.(3418-3420)CCA>CTA	p.P1140L	MKI67_uc001lkf.2_Missense_Mutation_p.P780L|MKI67_uc009yav.1_Missense_Mutation_p.P715L|MKI67_uc009yaw.1_Missense_Mutation_p.P290L	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1140	16 X 122 AA approximate repeats.|2.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TGTGCTTGTTGGAGTGTCCAC	0.468000													119	157					0	0	0.014410	0	0
RPLP2	6181	broad.mit.edu	37	11	812574	812574	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:812574T>A	uc001lrq.1	+	4	317	c.212T>A	c.(211-213)GTA>GAA	p.V71E	RPLP2_uc001lrr.1_Missense_Mutation_p.V71E	NM_001004	NP_000995	P05387	RLA2_HUMAN	ribosomal protein P2	71					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGTGGGGCTGTAGCCGTCTCT	0.637000													20	34					0	0	0.005443	0	0
OR51E1	143503	broad.mit.edu	37	11	4673817	4673817	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:4673817C>T	uc001lzi.3	+	2	205	c.61C>T	c.(61-63)CCT>TCT	p.P21S		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		AATAGGCCTCCCTGGTTTAGA	0.493000													54	119					0	0	0.014410	0	0
OR51F1	256892	broad.mit.edu	37	11	4790656	4790656	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:4790656G>A	uc010qyl.1	-	1	492	c.492C>T	c.(490-492)CTC>CTT	p.L164L		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	164						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		GAGGCTTAAGGAGCAAAAGTA	0.388000													17	72					0	0	0.007413	0	0
OR51F1	256892	broad.mit.edu	37	11	4791061	4791061	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:4791061G>A	uc010qyl.1	-	1	87	c.87C>T	c.(85-87)ATC>ATT	p.I29I		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	29						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AAGGAATGGAGATCCAGACAT	0.458000													8	26					0	0	0.003080	0	0
OR51A7	119687	broad.mit.edu	37	11	4928619	4928619	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:4928619C>T	uc010qyq.1	+	1	20	c.20C>T	c.(19-21)TCC>TTC	p.S7F		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCAATAACTCCGAAGTCAAG	0.438000													6	36					0	0	0.004482	0	0
OR51A4	401666	broad.mit.edu	37	11	4968138	4968138	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:4968138G>A	uc010qys.1	-	1	193	c.193C>T	c.(193-195)CTT>TTT	p.L65F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AACATGGAAAGAAAATAGTAC	0.423000													20	58					0	0	0.002780	0	0
OR52J3	119679	broad.mit.edu	37	11	5068032	5068032	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:5068032G>A	uc010qyv.1	+	1	277	c.277G>A	c.(277-279)GAG>AAG	p.E93K		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGATGCTCACGAGATTAACTA	0.488000													16	41					0	0	0.008871	0	0
OR52E2	119678	broad.mit.edu	37	11	5079909	5079909	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:5079909C>T	uc010qyw.1	-	1	949	c.949G>A	c.(949-951)GAA>AAA	p.E317K		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	317	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		AGGTACTCTTCCTTTTCCATT	0.338000													15	29					0	0	0.006122	0	0
OR51B2	79345	broad.mit.edu	37	11	5345482	5345482	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:5345482G>A	uc001mao.1	-	1	101	c.46C>T	c.(46-48)CCA>TCA	p.P16S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCAGCCCTGGAAAGCCAGTC	0.498000											OREG0003719	type=REGULATORY REGION|Gene=OR51B2|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	37					0	0	0.003080	0	0
OR52D1	390066	broad.mit.edu	37	11	5510840	5510840	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:5510840G>A	uc010qzg.1	+	1	904	c.904G>A	c.(904-906)GAG>AAG	p.E302K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGAACCAAGGAGATTCGGAG	0.448000													9	49					0	0	0.006214	0	0
OR52L1	338751	broad.mit.edu	37	11	6007457	6007457	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:6007457G>A	uc001mcd.2	-	1	759	c.704C>T	c.(703-705)TCC>TTC	p.S235F		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	235	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGGGCATAGGAAACACCAAT	0.517000													46	94					0	0	0.014410	0	0
PTPN5	84867	broad.mit.edu	37	11	18754841	18754841	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:18754841C>T	uc001mpd.2	-	11	1590	c.1159G>A	c.(1159-1161)GTG>ATG	p.V387M	PTPN5_uc001mpb.2_Missense_Mutation_p.V355M|PTPN5_uc001mpc.2_Missense_Mutation_p.V387M|PTPN5_uc001mpe.2_Missense_Mutation_p.V355M|PTPN5_uc010rdj.1_Missense_Mutation_p.V331M|PTPN5_uc001mpf.2_Missense_Mutation_p.V363M|PTPN5_uc010rdk.1_Missense_Mutation_p.V332M	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	387	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TCCTGCCACACCATGCGCCAG	0.587000													44	86					0	0	0.014410	0	0
GAS2	2620	broad.mit.edu	37	11	22777462	22777462	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:22777462G>A	uc009yie.2	+	7	992	c.686G>A	c.(685-687)GGA>GAA	p.G229E	GAS2_uc001mqm.2_Missense_Mutation_p.G229E|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.G229E	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	229	GAR.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						CTCTCCCAAGGAAGATACCGA	0.408000													13	36					0	0	0.003163	0	0
OR4B1	119765	broad.mit.edu	37	11	48238866	48238866	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:48238866C>T	uc010rhs.1	+	1	505	c.505C>T	c.(505-507)CCC>TCC	p.P169S		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CTTCTGTGGTCCCAATGTGAT	0.498000													46	85					0	0	0.014410	0	0
OR4C46	119749	broad.mit.edu	37	11	51515461	51515461	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:51515461C>T	uc010ric.1	+	1	180	c.180C>T	c.(178-180)TCC>TCT	p.S60S		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTACCTTTCCCTGGCCTATC	0.463000													90	159					0	0	0.014410	0	0
OR4S2	219431	broad.mit.edu	37	11	55418899	55418899	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:55418899C>T	uc001nhs.1	+	1	520	c.520C>T	c.(520-522)CAC>TAC	p.H174Y		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TGAGATAGATCACTACTTTTG	0.448000													45	234					0	0	0.014410	0	0
OR5L1	219437	broad.mit.edu	37	11	55579489	55579489	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:55579489C>T	uc001nhw.1	+	1	547	c.547C>T	c.(547-549)CCT>TCT	p.P183S		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	183	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TGATCTACCTCCTGTCTTAAG	0.433000													37	193					0	0	0.006999	0	0
OR5J2	282775	broad.mit.edu	37	11	55944293	55944293	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:55944293C>T	uc010rjb.1	+	1	200	c.200C>T	c.(199-201)TCA>TTA	p.S67L		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					AGCTGTCTTTCATTTGTGGAT	0.438000													57	109					0	0	0.014410	0	0
OR5M1	390168	broad.mit.edu	37	11	56380701	56380701	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:56380701G>A	uc001nja.1	-	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCCAGCGTAGGAGATGGTCTT	0.438000													10	69					0	0	0.013537	0	0
SMTNL1	219537	broad.mit.edu	37	11	57310403	57310403	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:57310403G>A	uc009ymh.1	+	2	342	c.342G>A	c.(340-342)AAG>AAA	p.K114K		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	96										ovary(1)	1						AACTTAAAAAGGAGGATGGTG	0.498000													2	6					0	0	0.004672	0	0
OR1S2	219958	broad.mit.edu	37	11	57971480	57971480	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:57971480G>A	uc010rkb.1	-	1	174	c.174C>T	c.(172-174)ATC>ATT	p.I58I		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	58	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				TAGCCACAATGATGAGCCCGT	0.468000													18	90					0	0	0.010504	0	0
GLYATL1	92292	broad.mit.edu	37	11	58722338	58722338	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:58722338C>T	uc001nnf.2	+	6	658	c.282C>T	c.(280-282)ATC>ATT	p.I94I	uc001nng.1_Intron|GLYATL1_uc001nnh.1_Silent_p.I125I|GLYATL1_uc001nni.1_Silent_p.I94I|GLYATL1_uc001nnj.1_Silent_p.I94I			Q969I3	GLYL1_HUMAN	SubName: Full=Glycine acyltransferase family-C; SubName: Full=Glycine-N-acyltransferase-like 1, isoform CRA_a;	94						mitochondrion	glycine N-acyltransferase activity			ovary(1)	1					Glycine(DB00145)	ATTGTGAGATCGTAAACTGGA	0.318000													19	26					0	0	0.008871	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141459	63141459	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:63141459C>T	uc001nww.2	+	4	1023	c.755C>T	c.(754-756)GCT>GTT	p.A252V	SLC22A9_uc001nwx.2_RNA	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	252	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						GCAGGCCTGGCTTTTGCCATT	0.483000													4	28					0	0	0.001168	0	0
PLCB3	5331	broad.mit.edu	37	11	64029508	64029508	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:64029508C>T	uc001nzb.2	+	17	1998	c.1998C>T	c.(1996-1998)AAC>AAT	p.N666N	PLCB3_uc009ypg.1_Silent_p.N666N|PLCB3_uc009yph.1_Silent_p.N599N|PLCB3_uc009ypi.2_Silent_p.N666N	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	666	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						TCTTCTGGAACGTAGGGTGCC	0.592000													25	54					0	0	0.006320	0	0
GPR137	56834	broad.mit.edu	37	11	64056654	64056655	+	Missense_Mutation	DNP	AC	CT	CT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:64056654_64056655AC>CT	uc001nzg.1	+	8	1379_1380	c.1071_1072AC>CT	c.(1069-1074)CCACCC>CCCTCC	p.P358S	GPR137_uc010rni.1_Missense_Mutation_p.P416S|GPR137_uc001nzf.2_Missense_Mutation_p.T343L|GPR137_uc001nzi.2_Missense_Mutation_p.T393L|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	358	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						TCTCTACTCCACCCCACAGACG	0.653000													37	77					0	0	0.004672	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64602625	64602625	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:64602625G>A	uc001obs.3	-	17	1954	c.1954C>T	c.(1954-1956)CTA>TTA	p.L652L		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	652	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						TCTGCTTCTAGCTGGGGCCGG	0.687000													10	20					0	0	0.013537	0	0
LTBP3	4054	broad.mit.edu	37	11	65315017	65315017	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:65315017G>A	uc001oej.2	-	14	2269	c.2000C>T	c.(1999-2001)CCC>CTC	p.P667L	LTBP3_uc001oef.2_5'Flank|LTBP3_uc001oeg.2_5'Flank|LTBP3_uc001oeh.2_Missense_Mutation_p.P97L|LTBP3_uc010roi.1_Missense_Mutation_p.P550L|LTBP3_uc001oei.2_Missense_Mutation_p.P667L|LTBP3_uc010roj.1_Missense_Mutation_p.P368L|LTBP3_uc010rok.1_Missense_Mutation_p.P578L	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	667	EGF-like 5; calcium-binding (Potential).|Cys-rich.					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						GCACAGGTGGGGCTTGGCGCA	0.657000													12	69					0	0	0.003163	0	0
CST6	1474	broad.mit.edu	37	11	65780320	65780320	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:65780320C>T	uc001ogr.2	+	2	318	c.264C>T	c.(262-264)TTC>TTT	p.F88F	CST6_uc001ogs.1_5'UTR	NM_001323	NP_001314	Q15828	CYTM_HUMAN	cystatin M precursor	88					anatomical structure morphogenesis	extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1						TCAAGTACTTCCTGACGATGG	0.607000													20	77					0	0	0.003330	0	0
NPAS4	266743	broad.mit.edu	37	11	66192167	66192167	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:66192167C>T	uc001ohx.1	+	7	1982	c.1806C>T	c.(1804-1806)GTC>GTT	p.V602V	NPAS4_uc010rpc.1_Silent_p.V392V	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	602					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CTGTGGATGTCCCCCTGGTGC	0.582000													21	96					0	0	0.003954	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800612	74800612	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:74800612C>T	uc010rro.1	-	1	147	c.147G>A	c.(145-147)CTG>CTA	p.L49L		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCACCAGGATCAGGGCATTAC	0.507000													13	62					0	0	0.004007	0	0
MYO7A	4647	broad.mit.edu	37	11	76893570	76893570	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:76893570G>A	uc001oyb.2	+	25	3482	c.3210G>A	c.(3208-3210)GTG>GTA	p.V1070V	MYO7A_uc010rsl.1_Silent_p.V1070V|MYO7A_uc010rsm.1_Silent_p.V1059V|MYO7A_uc001oyc.2_Silent_p.V1070V|MYO7A_uc001oyd.2_Silent_p.V410V|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Silent_p.V281V	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1070	MyTH4 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						AGATCCCTGTGATGACCAAGA	0.602000													14	31					0	0	0.004990	0	0
INTS4	92105	broad.mit.edu	37	11	77602489	77602489	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:77602489G>A	uc001oys.2	-	21	2496	c.2468C>T	c.(2467-2469)ACC>ATC	p.T823I	C11orf67_uc001oyp.2_Intron|C11orf67_uc001oyr.1_Intron|INTS4_uc001oyt.2_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	823					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CTCGATGATGGTGGCTGAGGC	0.493000													3	24					0	0	0.001168	0	0
ANKRD42	338699	broad.mit.edu	37	11	82917156	82917156	+	Silent	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:82917156T>C	uc001ozz.1	+	3	617	c.195T>C	c.(193-195)GGT>GGC	p.G65G	ANKRD42_uc009yvi.1_Silent_p.G93G|ANKRD42_uc010rsv.1_Silent_p.G93G|ANKRD42_uc001paa.2_Silent_p.G93G|ANKRD42_uc001pab.1_Silent_p.G93G	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	65	ANK 2.									skin(1)	1						CAACGAGAGGTTGGACAGCAT	0.378000													44	79					0	0	0.014410	0	0
PIWIL4	143689	broad.mit.edu	37	11	94334973	94334973	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:94334973T>A	uc001pfa.2	+	12	1604	c.1393T>A	c.(1393-1395)TCT>ACT	p.S465T	PIWIL4_uc010rue.1_RNA|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	465					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TCAACCTGTGTCTGCTGCTGA	0.368000													32	144					0	0	0.006999	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101775612	101775612	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:101775612G>A	uc001pgl.2	-	5	968	c.372C>T	c.(370-372)CTC>CTT	p.L124L		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	124					signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		TAGTCAAAAGGAGAACTCTAT	0.363000													9	54					0	0	0.008291	0	0
MMP7	4316	broad.mit.edu	37	11	102395778	102395778	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:102395778G>A	uc001phb.2	-	4	549	c.502C>T	c.(502-504)CCA>TCA	p.P168S	MMP7_uc009yxd.2_Missense_Mutation_p.P168S	NM_002423	NP_002414	P09237	MMP7_HUMAN	matrix metalloproteinase 7 preproprotein	168					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(1)	1	all_cancers(8;2.04e-05)|all_epithelial(12;0.00053)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0105)|all cancers(10;0.0496)|Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0147)		CCATCAAATGGGTAGGAGTCC	0.458000													17	47					0	0	0.007413	0	0
CASP5	838	broad.mit.edu	37	11	104874009	104874009	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:104874009G>A	uc010rva.1	-	4	567	c.535C>T	c.(535-537)CAT>TAT	p.H179Y	CASP5_uc010ruz.1_Missense_Mutation_p.H192Y|CASP5_uc010rvb.1_Missense_Mutation_p.H121Y|CASP5_uc010rvc.1_Missense_Mutation_p.H37Y|CASP5_uc009yxh.2_Intron|CASP5_uc010rvd.1_Intron	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	179					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		ACCTCATCATGATTTTTTTTA	0.353000													42	79					0	0	0.014410	0	0
DSCAML1	57453	broad.mit.edu	37	11	117392057	117392058	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:117392057_117392058AG>TT	uc001prh.1	-	6	1182_1183	c.1180_1181CT>AA	c.(1180-1182)CTC>AAC	p.L394N	DSCAML1_uc001pri.1_Missense_Mutation_p.L198N	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	334	Extracellular (Potential).|Ig-like C2-type 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GGCACAGGAGAGGATGACCGTG	0.634000													6	30					0	0	0.004672	0	0
NLRX1	79671	broad.mit.edu	37	11	119044377	119044377	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:119044377G>A	uc001pvu.2	+	5	634	c.419G>A	c.(418-420)GGG>GAG	p.G140E	NLRX1_uc010rzc.1_5'UTR|NLRX1_uc001pvv.2_Missense_Mutation_p.G140E|NLRX1_uc001pvw.2_Missense_Mutation_p.G140E|NLRX1_uc001pvx.2_Missense_Mutation_p.G140E	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	140	Required for interaction with MAVS.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CCCCAGGCCGGGCTCCCCCCA	0.657000													13	37					0	0	0.013537	0	0
OR8D1	283159	broad.mit.edu	37	11	124179743	124179743	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:124179743C>T	uc010sag.1	-	1	920	c.920G>A	c.(919-921)GGA>GAA	p.G307E		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GACTCATTTTCCTACTAAGAC	0.368000													15	37					0	0	0.008871	0	0
OR8B12	219858	broad.mit.edu	37	11	124412768	124412768	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:124412768G>A	uc010sam.1	-	1	783	c.783C>T	c.(781-783)CCC>CCT	p.P261P		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		GGATGGAAAGGGGTTTGAGAT	0.443000													10	47					0	0	0.008291	0	0
NRGN	4900	broad.mit.edu	37	11	124615495	124615495	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:124615495C>T	uc001qaq.2	+	2	264	c.112C>T	c.(112-114)CGG>TGG	p.R38W	NRGN_uc001qar.2_Missense_Mutation_p.R38W	NM_006176	NP_006167	Q92686	NEUG_HUMAN	neurogranin	38	IQ.				nervous system development|signal transduction		calmodulin binding				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		GGCGAGTTTTCGGGGCCACAT	0.483000													7	21					0	0	0.004482	0	0
RPUSD4	84881	broad.mit.edu	37	11	126073526	126073526	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:126073526C>T	uc001qde.2	-	7	975	c.921G>A	c.(919-921)AAG>AAA	p.K307K	RPUSD4_uc010sbl.1_Silent_p.K114K|RPUSD4_uc009zbz.2_Silent_p.K276K|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	307					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		CTAGCCCCAGCTTCTTCAGGG	0.587000													9	35					0	0	0.008291	0	0
GLB1L2	89944	broad.mit.edu	37	11	134212729	134212729	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:134212729G>A	uc001qhp.2	+	2	356	c.168G>A	c.(166-168)CTG>CTA	p.L56L		NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	56					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		ACTTCATGCTGGAGGATTCCA	0.602000													11	68					0	0	0.008291	0	0
SLC6A12	6539	broad.mit.edu	37	12	300272	300272	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:300272C>T	uc001qhz.2	-	17	2350	c.1807G>A	c.(1807-1809)GAA>AAA	p.E603K	SLC6A12_uc001qhx.2_Missense_Mutation_p.E260K|SLC6A12_uc001qhy.2_Missense_Mutation_p.E159K|SLC6A12_uc001qia.2_Missense_Mutation_p.E603K|SLC6A12_uc001qib.2_Missense_Mutation_p.E603K|SLC6A12_uc009zdh.1_Missense_Mutation_p.E603K	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	603	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			ATCAGTCCTTCCCTTGTTGGG	0.622000													4	17					0	0	0.001984	0	0
KDM5A	5927	broad.mit.edu	37	12	406238	406238	+	Silent	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:406238A>G	uc001qif.1	-	25	4566	c.4203T>C	c.(4201-4203)GCT>GCC	p.A1401A	KDM5A_uc001qie.1_Silent_p.A1401A	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	1401					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						CAGAAGAATAAGCATGCTCTG	0.398000			T 	NUP98	AML								26	22					0	0	0.009535	0	0
LEPREL2	10536	broad.mit.edu	37	12	6946236	6946236	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:6946236C>T	uc001qra.1	+	12	1580	c.1546C>T	c.(1546-1548)CTT>TTT	p.L516F	LEPREL2_uc001qqz.1_Missense_Mutation_p.L323F|LEPREL2_uc001qrb.1_Missense_Mutation_p.L323F	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	516					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GCTCACGGTGCTTAAGGCTGC	0.667000													33	45					0	0	0.006230	0	0
RBP5	83758	broad.mit.edu	37	12	7277224	7277224	+	Splice_Site	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:7277224C>T	uc001qsq.2	-	3	449	c.354_splice	c.e3+1	p.L118_splice		NM_031491	NP_113679	P82980	RET5_HUMAN	retinol binding protein 5, cellular							cytoplasm	retinal binding|retinol binding|transporter activity			ovary(1)	1					Vitamin A(DB00162)	ACCCCATTTACCAGATACAGC	0.602000													67	135					0	0	0.014410	0	0
CD163	9332	broad.mit.edu	37	12	7654007	7654007	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:7654007C>T	uc001qsz.3	-	3	313	c.185G>A	c.(184-186)GGG>GAG	p.G62E	CD163_uc001qta.3_Missense_Mutation_p.G62E|CD163_uc009zfw.2_Missense_Mutation_p.G62E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	62	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTCCACTCTCCCGCTACACTT	0.502000													36	138					0	0	0.014410	0	0
PRB1	5542	broad.mit.edu	37	12	11506847	11506847	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:11506847C>T	uc001qzw.1	-	3	227	c.190G>A	c.(190-192)GGA>AGA	p.G64R	PRB1_uc001qzu.1_Missense_Mutation_p.G64R|PRB1_uc001qzv.1_Missense_Mutation_p.G64R	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	125	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|4.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele M).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTTGCCTCCTTGTGGGGGT	0.607000													6	425					0	0	0.002450	0	0
PRB2	653247	broad.mit.edu	37	12	11546576	11546576	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:11546576C>T	uc010shk.1	-	3	471	c.436G>A	c.(436-438)GGA>AGA	p.G146R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTTGCCTCCTTGTGGGGGT	0.582000													8	569					0	0	0.007413	0	0
GUCY2C	2984	broad.mit.edu	37	12	14827575	14827575	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:14827575C>T	uc001rcd.2	-	8	1205	c.1068G>A	c.(1066-1068)AGG>AGA	p.R356R	GUCY2C_uc009zhz.2_Silent_p.R356R	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	356	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						AAGTGAGATTCCTGAAAGCAT	0.393000													87	94					0	0	0.014410	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032512	21032512	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:21032512C>T	uc001rek.2	+	10	1404	c.1278C>T	c.(1276-1278)TTC>TTT	p.F426F	SLCO1B3_uc001rel.2_Silent_p.F426F|SLCO1B3_uc010sil.1_Silent_p.F426F|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.F251F	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	426	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TTCTATATTTCCCTCTAATCT	0.313000													22	36					0	0	0.003954	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918683	21918683	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:21918683C>T	uc001rff.2	-	3	1587	c.1249G>A	c.(1249-1251)GGA>AGA	p.G417R		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	417	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	TTTTGATTTCCTTCTGGAGTC	0.423000													65	94					0	0	0.014410	0	0
LRMP	4033	broad.mit.edu	37	12	25260825	25260825	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:25260825C>T	uc001rgh.2	+	21	2365	c.1331C>T	c.(1330-1332)TCT>TTT	p.S444F	LRMP_uc010sja.1_Missense_Mutation_p.S444F|LRMP_uc010sjb.1_Missense_Mutation_p.S391F|LRMP_uc001rgi.2_RNA|LRMP_uc010sjc.1_Missense_Mutation_p.S444F|LRMP_uc010sjd.1_Missense_Mutation_p.S391F	NM_006152	NP_006143	Q12912	LRMP_HUMAN	lymphoid-restricted membrane protein	500	Helical; Anchor for type IV membrane protein; (Potential).				vesicle fusion|vesicle targeting	endoplasmic reticulum membrane|integral to plasma membrane				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Colorectal(261;0.11)					CTCTGGCTCTCTATTGCATTC	0.438000													46	58					0	0	0.014410	0	0
C12orf40	283461	broad.mit.edu	37	12	40114658	40114658	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:40114658G>A	uc001rmc.2	+	13	1731	c.1564G>A	c.(1564-1566)GAA>AAA	p.E522K	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	522										ovary(6)	6						CAAAACCAAGGAAAAAATGAA	0.294000													16	76					0	0	0.010504	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43944717	43944717	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:43944717C>T	uc010skx.1	-	2	448	c.448G>A	c.(448-450)GGC>AGC	p.G150S		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	150						proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CTCACCAGGCCTCCGCATAAG	0.612000													5	6					0	0	0.001984	0	0
NELL2	4753	broad.mit.edu	37	12	45059292	45059292	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:45059292G>A	uc001rog.2	-	13	2014	c.1419C>T	c.(1417-1419)ATC>ATT	p.I473I	NELL2_uc001rof.3_Silent_p.I472I|NELL2_uc001roh.2_Silent_p.I473I|NELL2_uc009zkd.2_Silent_p.I472I|NELL2_uc010skz.1_Silent_p.I523I|NELL2_uc010sla.1_Silent_p.I496I|NELL2_uc001roi.1_Silent_p.I473I|NELL2_uc010slb.1_Silent_p.I472I|NELL2_uc001roj.2_Silent_p.I473I	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	473	EGF-like 2; calcium-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CATCAATTCTGATGTATCCAG	0.353000													19	34					0	0	0.007413	0	0
KRT6B	3854	broad.mit.edu	37	12	52845694	52845694	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:52845694C>T	uc001sak.2	-	1	217	c.169G>A	c.(169-171)GGC>AGC	p.G57S		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	57	Head.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		CTGCGGCTGCCAAAGCCAGCT	0.672000													30	140					0	0	0.003755	0	0
OR6C4	341418	broad.mit.edu	37	12	55945604	55945604	+	Silent	SNP	C	T	T	rs149076957	byFrequency	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:55945604C>T	uc010spp.1	+	1	594	c.594C>T	c.(592-594)ATC>ATT	p.I198I		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	198	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGATGGTCATCCTCTTGGCCG	0.468000													34	57					0	0	0.009718	0	0
DGKA	1606	broad.mit.edu	37	12	56347547	56347547	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:56347547A>T	uc001sij.2	+	24	2467	c.2203A>T	c.(2203-2205)AGC>TGC	p.S735C	DGKA_uc001sik.2_Missense_Mutation_p.S735C|DGKA_uc001sil.2_Missense_Mutation_p.S735C|DGKA_uc001sim.2_Missense_Mutation_p.S735C|DGKA_uc001sin.2_Missense_Mutation_p.S735C|DGKA_uc009zof.2_Missense_Mutation_p.S381C|DGKA_uc001sio.2_Missense_Mutation_p.S477C	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	735					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	TGGCTTCTTGAGCTAAGGGGG	0.572000													21	56					0	0	0.008871	0	0
C12orf56	115749	broad.mit.edu	37	12	64679829	64679829	+	Silent	SNP	A	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:64679829A>T	uc001ssa.3	-	5	645	c.645T>A	c.(643-645)CTT>CTA	p.L215L	uc001srx.2_Intron|C12orf56_uc001sry.2_5'UTR|C12orf56_uc001srz.2_5'UTR	NM_001099676	NP_001093146	Q8IXR9	CL056_HUMAN	hypothetical protein LOC115749	378											0			GBM - Glioblastoma multiforme(3;0.000582)	GBM - Glioblastoma multiforme(28;0.0259)		TGAAATAGAAAAGGTCACTGG	0.348000													9	17					0	0	0.008291	0	0
RAB3IP	117177	broad.mit.edu	37	12	70150363	70150363	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:70150363C>T	uc001svp.2	+	3	925	c.478C>T	c.(478-480)CGT>TGT	p.R160C	RAB3IP_uc001svl.1_Missense_Mutation_p.R144C|RAB3IP_uc001svm.2_Missense_Mutation_p.R144C|RAB3IP_uc001svn.2_Missense_Mutation_p.R144C|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Missense_Mutation_p.R160C|RAB3IP_uc001svr.2_RNA|RAB3IP_uc001svs.2_RNA	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	160					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			TAGTCTGTCTCGTTTACGAAG	0.393000													50	107					0	0	0.014410	0	0
TRHDE	29953	broad.mit.edu	37	12	72866853	72866853	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:72866853G>A	uc001sxa.2	+	5	1372	c.1342G>A	c.(1342-1344)GGT>AGT	p.G448S		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	448	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GCAGTGGTTTGGTGACCTTGT	0.368000													51	180					0	0	0.014410	0	0
NAV3	89795	broad.mit.edu	37	12	78400717	78400717	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:78400717G>A	uc001syp.2	+	8	1572	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K	NAV3_uc001syo.2_Missense_Mutation_p.E467K	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	467						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACAGCCAAAGGAAAAAGAAGA	0.413000										HNSCC(70;0.22)			28	34					0	0	0.005443	0	0
NAV3	89795	broad.mit.edu	37	12	78513686	78513686	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:78513686G>A	uc001syp.2	+	15	3883	c.3710G>A	c.(3709-3711)GGA>GAA	p.G1237E	NAV3_uc001syo.2_Missense_Mutation_p.G1237E|NAV3_uc010sub.1_Missense_Mutation_p.G737E|NAV3_uc009zsf.2_Missense_Mutation_p.G245E	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1237	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AGGCAGCCAGGATCCAAGTAT	0.423000										HNSCC(70;0.22)			21	64					0	0	0.005443	0	0
KITLG	4254	broad.mit.edu	37	12	88926227	88926227	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:88926227C>T	uc001tav.2	-	3	366	c.183G>A	c.(181-183)ATG>ATA	p.M61I	KITLG_uc001taw.2_Missense_Mutation_p.M61I|KITLG_uc009zso.1_RNA	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	61	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						CCAAAACATCCATCCCGGGGA	0.333000									Testicular_Cancer_Familial_Clustering_of				42	113					0	0	0.014410	0	0
PLXNC1	10154	broad.mit.edu	37	12	94653466	94653466	+	Silent	SNP	C	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:94653466C>G	uc001tdc.2	+	19	3456	c.3207C>G	c.(3205-3207)GTC>GTG	p.V1069V	PLXNC1_uc010sut.1_Silent_p.V116V|PLXNC1_uc009zsv.2_5'Flank	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1069	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						TTGTTACTGTCATCCACACCC	0.333000													28	78					0	0	0.004289	0	0
ANO4	121601	broad.mit.edu	37	12	101493479	101493479	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:101493479C>T	uc010svm.1	+	22	2702	c.2130C>T	c.(2128-2130)TTC>TTT	p.F710F	ANO4_uc001thw.2_Silent_p.F675F|ANO4_uc001thx.2_Silent_p.F710F|ANO4_uc001thy.2_Silent_p.F230F	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	710	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						ATGGACTCTTCGATGAATACT	0.333000										HNSCC(74;0.22)			30	46					0	0	0.006999	0	0
IGF1	3479	broad.mit.edu	37	12	102811662	102811662	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:102811662C>T	uc001tjp.3	-	4	741	c.522G>A	c.(520-522)AAG>AAA	p.K174K	IGF1_uc001tjn.2_Intron|IGF1_uc001tjm.2_Intron|IGF1_uc001tjo.2_Intron	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	174					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						GCTCTTTCTTCTTTCCTCTGA	0.468000													250	346					0	0	0.014410	0	0
PAH	5053	broad.mit.edu	37	12	103245512	103245512	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:103245512C>T	uc001tjq.1	-	9	1337	c.865G>A	c.(865-867)GGA>AGA	p.G289R		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	289					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	GGCACATGTCCCAACAGCTCA	0.468000													23	54					0	0	0.009535	0	0
WSCD2	9671	broad.mit.edu	37	12	108589650	108589650	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:108589650G>A	uc001tms.2	+	2	785	c.41G>A	c.(40-42)CGG>CAG	p.R14Q	WSCD2_uc001tmt.2_Missense_Mutation_p.R14Q	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	14						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						TACTTCCGCCGGAAACCTGTG	0.592000													42	77					0	0	0.009718	0	0
ACAD10	80724	broad.mit.edu	37	12	112184963	112184963	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:112184963C>T	uc001tsq.2	+	15	2567	c.2367C>T	c.(2365-2367)CGC>CGT	p.R789R	ACAD10_uc001tsp.2_Silent_p.R789R|ACAD10_uc009zvx.2_Silent_p.R820R|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	789							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						GGAAAGCCCGCTCCTGTTTTG	0.642000													23	22					0	0	0.002780	0	0
OAS2	4939	broad.mit.edu	37	12	113445518	113445518	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:113445518G>A	uc001tuj.2	+	9	1805	c.1665G>A	c.(1663-1665)AGG>AGA	p.R555R	OAS2_uc001tui.1_Silent_p.R555R	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	555	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						AGTGTGAAAGGAAACTGAAGC	0.542000													26	102					0	0	0.012213	0	0
SIRT4	23409	broad.mit.edu	37	12	120750760	120750760	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:120750760C>T	uc001tyc.2	+	4	886	c.866C>T	c.(865-867)CCC>CTC	p.P289L		NM_012240	NP_036372	Q9Y6E7	SIRT4_HUMAN	sirtuin 4	289	Deacetylase sirtuin-type.				chromatin silencing|negative regulation of insulin secretion|protein ADP-ribosylation|protein deacetylation	mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|protein binding|zinc ion binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AACATTGGGCCCACACGGTCG	0.488000													45	127					0	0	0.010771	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834288	125834288	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:125834288C>T	uc001uhe.1	+	2	351	c.343C>T	c.(343-345)CCC>TCC	p.P115S		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	115	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGACAAATTTCCCTTCAACTG	0.468000													63	79					0	0	0.014410	0	0
EP400NL	347918	broad.mit.edu	37	12	132593196	132593196	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr12:132593196C>T	uc001ujv.2	+	2	1388	c.1364C>T	c.(1363-1365)GCG>GTG	p.A455V	EP400NL_uc001ujs.3_Missense_Mutation_p.A386V|EP400NL_uc009zyq.2_Missense_Mutation_p.A323V|EP400NL_uc001ujt.2_Missense_Mutation_p.A323V|EP400NL_uc001ujw.1_Missense_Mutation_p.A154V					RecName: Full=EP400 N-terminal-like protein;												0						AGGACTTCTGCGGCTTTTCCA	0.572000													4	2					0	0	0.000602	0	0
EFHA1	221154	broad.mit.edu	37	13	22084147	22084147	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:22084147G>A	uc001uof.2	-	8	779	c.757C>T	c.(757-759)CGA>TGA	p.R253*	EFHA1_uc010tct.1_Nonsense_Mutation_p.R43*	NM_152726	NP_689939	Q8IYU8	EFHA1_HUMAN	EF-hand domain family, member A1	253	EF-hand 2.						calcium ion binding				0		all_cancers(29;1.24e-15)|all_epithelial(30;5.4e-14)|all_lung(29;2.04e-13)|Lung SC(185;0.0367)		all cancers(112;0.000171)|Epithelial(112;0.000398)|OV - Ovarian serous cystadenocarcinoma(117;0.00641)|Lung(94;0.189)		ATTTACCTTCGAAATTCTTTA	0.284000													13	26					0	0	0.003163	0	0
RNF17	56163	broad.mit.edu	37	13	25362126	25362126	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:25362126G>A	uc001upr.2	+	7	653	c.612G>A	c.(610-612)AGG>AGA	p.R204R	RNF17_uc010tdd.1_Silent_p.R63R|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.R204R|RNF17_uc001ups.2_Silent_p.R143R|RNF17_uc001upq.1_Silent_p.R204R	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	204					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TTAAATGAAGGAAAAAGAACC	0.264000													15	62					0	0	0.006122	0	0
NBEA	26960	broad.mit.edu	37	13	35619464	35619464	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:35619464T>G	uc001uvb.2	+	5	855	c.649T>G	c.(649-651)TTA>GTA	p.L217V		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	217						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		AGTAAAATTATTATCAGTTCT	0.358000													8	18					0	0	0.003080	0	0
STOML3	161003	broad.mit.edu	37	13	39542571	39542571	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:39542571G>A	uc001uwx.2	-	6	755	c.617C>T	c.(616-618)GCC>GTC	p.A206V	STOML3_uc010tez.1_Missense_Mutation_p.A197V	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	206	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		CTCAGCCTCGGCTGCCATGGA	0.562000													58	114					0	0	0.014410	0	0
TRIM13	10206	broad.mit.edu	37	13	50586298	50586298	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:50586298C>T	uc001vdq.1	+	3	535	c.222C>T	c.(220-222)TCC>TCT	p.S74S	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|TRIM13_uc001vdp.1_Silent_p.S77S|TRIM13_uc001vdr.1_Silent_p.S74S|TRIM13_uc001vds.1_Silent_p.S74S	NM_052811	NP_434698	O60858	TRI13_HUMAN	ret finger protein 2 isoform 1	74					anatomical structure morphogenesis|ER-associated protein catabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination	cytoplasm|endoplasmic reticulum membrane|integral to membrane	protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.53e-10)|COAD - Colon adenocarcinoma(199;0.205)		TTAATTACTCCCTGAAGGGTA	0.453000													24	58					0	0	0.003330	0	0
ATP7B	540	broad.mit.edu	37	13	52531705	52531705	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:52531705G>A	uc001vfw.2	-	9	2551	c.2394C>T	c.(2392-2394)CTC>CTT	p.L798L	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Silent_p.L636L|ATP7B_uc001vfy.2_Silent_p.L687L|ATP7B_uc010tgt.1_Silent_p.L798L|ATP7B_uc010tgu.1_Silent_p.L750L|ATP7B_uc010tgv.1_Silent_p.L720L|ATP7B_uc001vfv.2_Silent_p.L70L|ATP7B_uc010tgs.1_Silent_p.L70L	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	798	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CTGTGGCTTGGAGAGACATGA	0.443000									Wilson_disease				25	66					0	0	0.008361	0	0
PCDH20	64881	broad.mit.edu	37	13	61986305	61986305	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:61986305C>T	uc001vid.3	-	2	2291	c.1927G>A	c.(1927-1929)GAC>AAC	p.D643N	PCDH20_uc010thj.1_Missense_Mutation_p.D643N	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	616	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		AAGCTGAAGTCCTTGTTGATA	0.478000													13	55					0	0	0.001855	0	0
KCTD12	115207	broad.mit.edu	37	13	77459381	77459381	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:77459381G>A	uc010aeu.1	-	1	1160	c.903C>T	c.(901-903)GCC>GCT	p.A301A	KCTD12_uc001vka.1_Silent_p.A301A	NM_138444	NP_612453	Q96CX2	KCD12_HUMAN	potassium channel tetramerisation domain	301						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(1)	1		Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.0499)		TGCTGGCAAAGGCGCAGGTGC	0.622000											OREG0022449	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	21					0	0	0.013537	0	0
FARP1	10160	broad.mit.edu	37	13	99047569	99047569	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:99047569C>T	uc001vnj.2	+	13	1589	c.1253C>T	c.(1252-1254)TCC>TTC	p.S418F	FARP1_uc001vnh.2_Missense_Mutation_p.S418F	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	418					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CCGAAGGTTTCCGCCGGGGAG	0.687000													10	31					0	0	0.010729	0	0
ATP11A	23250	broad.mit.edu	37	13	113439559	113439559	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr13:113439559C>T	uc001vsi.3	+	2	238	c.150C>T	c.(148-150)ATC>ATT	p.I50I	ATP11A_uc001vsj.3_Silent_p.I50I|ATP11A_uc001vsm.1_5'UTR	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	50	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ACAACAGGATCGTCTCGTCCA	0.552000													28	70					0	0	0.003755	0	0
OR4K1	79544	broad.mit.edu	37	14	20404636	20404636	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:20404636C>T	uc001vwj.1	+	1	811	c.811C>T	c.(811-813)CTT>TTT	p.L271F		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	271	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GGACAAATTTCTTTCTGTGTT	0.418000													23	69					0	0	0.002780	0	0
MYH6	4624	broad.mit.edu	37	14	23855722	23855722	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:23855722C>T	uc001wjv.2	-	33	4828	c.4761G>A	c.(4759-4761)CAG>CAA	p.Q1587Q		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1587	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGCGCTTGGCCTGTTCCATCT	0.607000													92	210					0	0	0.014410	0	0
CPNE6	9362	broad.mit.edu	37	14	24544723	24544723	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:24544723G>A	uc001wll.2	+	9	886	c.787G>A	c.(787-789)GAC>AAC	p.D263N	CPNE6_uc010tnv.1_Missense_Mutation_p.D318N|CPNE6_uc001wlm.2_Missense_Mutation_p.D88N|CPNE6_uc001wln.2_5'Flank	NM_006032	NP_006023	O95741	CPNE6_HUMAN	copine 6	263					lipid metabolic process|nervous system development|synaptic transmission|vesicle-mediated transport		calcium ion binding|transporter activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0184)		GATGCAGTGGGACTGTATCAA	0.542000													7	8					0	0	0.003080	0	0
GZMB	3002	broad.mit.edu	37	14	25101178	25101178	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:25101178C>T	uc001wps.2	-	4	552	c.486G>A	c.(484-486)GAG>GAA	p.E162E	GZMB_uc010ama.2_Silent_p.E150E|GZMB_uc010amb.2_RNA	NM_004131	NP_004122	P10144	GRAB_HUMAN	granzyme B precursor	162	Peptidase S1.				activation of pro-apoptotic gene products|cleavage of lamin|cytolysis|induction of apoptosis by intracellular signals	cytosol|immunological synapse|nucleus	protein binding|serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.028)		TCATCTTCACCTCTTGTAGTG	0.537000													30	89					0	0	0.010818	0	0
SLC25A21	89874	broad.mit.edu	37	14	37203756	37203756	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:37203756T>C	uc001wtz.1	-	4	536	c.226A>G	c.(226-228)ATT>GTT	p.I76V		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	76	Solcar 1.|Helical; Name=2; (Potential).				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		GGTGGCAGAATTCCCTTGTAA	0.398000													5	10					0	0	0.001984	0	0
SSTR1	6751	broad.mit.edu	37	14	38679184	38679184	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:38679184G>A	uc001wul.1	+	3	1207	c.590G>A	c.(589-591)CGC>CAC	p.R197H	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	197	Extracellular (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	GTCTTCTCTCGCACCGCGGCC	0.632000													17	24					0	0	0.006122	0	0
ACTR10	55860	broad.mit.edu	37	14	58701235	58701235	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:58701235C>T	uc001xdf.2	+	13	1323	c.1220C>T	c.(1219-1221)CCT>CTT	p.P407L	C14orf37_uc010tro.1_Intron|ACTR10_uc001xdg.2_Missense_Mutation_p.P209L|ACTR10_uc001xdh.2_Missense_Mutation_p.P209L|ACTR10_uc010trp.1_RNA|ACTR10_uc010apc.2_Missense_Mutation_p.P197L	NM_018477	NP_060947	Q9NZ32	ARP10_HUMAN	uncharacterized hypothalamus protein HARP11	407						cytoplasm				central_nervous_system(1)	1						ACTCAACCACCTCTGATGAAG	0.348000													27	58					0	0	0.010818	0	0
FAM71D	161142	broad.mit.edu	37	14	67665012	67665012	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:67665012C>T	uc001xja.1	+	3	388	c.134C>T	c.(133-135)CCC>CTC	p.P45L	FAM71D_uc010tsv.1_RNA|FAM71D_uc001xiz.2_RNA|FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	45										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		GTATCTCCTCCCATGTTAGAG	0.398000													38	96					0	0	0.014410	0	0
C14orf115	55237	broad.mit.edu	37	14	74824812	74824812	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:74824812G>A	uc001xpw.3	+	2	1517	c.1326G>A	c.(1324-1326)AAG>AAA	p.K442K		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	442					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GGCGGCGAAAGGCCCTCCGGA	0.572000													22	59					0	0	0.012319	0	0
KCNK10	54207	broad.mit.edu	37	14	88652128	88652128	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:88652128C>T	uc001xwo.2	-	7	1825	c.1368G>A	c.(1366-1368)AGG>AGA	p.R456R	KCNK10_uc001xwm.2_Silent_p.R461R|KCNK10_uc001xwn.2_Silent_p.R461R	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	456	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						CCTTGTTTTTCCTCTTGGTGA	0.537000													35	86					0	0	0.007835	0	0
KIAA1409	57578	broad.mit.edu	37	14	94173165	94173165	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:94173165G>A	uc001ybv.1	+	48	7441	c.7358G>A	c.(7357-7359)CGA>CAA	p.R2453Q	KIAA1409_uc001ybs.1_Missense_Mutation_p.R2431Q	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2608						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCAGCCCTCCGAAAGTGGTTG	0.592000													25	57					0	0	0.005443	0	0
ASB2	51676	broad.mit.edu	37	14	94404084	94404084	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:94404084G>A	uc001ycc.1	-	7	2076	c.1587C>T	c.(1585-1587)ATC>ATT	p.I529I	ASB2_uc001ycb.1_Silent_p.I223I|ASB2_uc001ycd.2_Silent_p.I577I|ASB2_uc001yce.1_Silent_p.I475I	NM_016150	NP_057234	Q96Q27	ASB2_HUMAN	ankyrin repeat and SOCS box-containing protein	529					intracellular signal transduction					ovary(1)|pancreas(1)	2		all_cancers(154;0.13)		COAD - Colon adenocarcinoma(157;0.217)|Epithelial(152;0.232)		CAAAGCTGTCGATGTGTTCCT	0.617000													37	57					0	0	0.011902	0	0
SERPINA10	51156	broad.mit.edu	37	14	94750329	94750329	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:94750329G>A	uc001yct.2	-	5	1774	c.1308C>T	c.(1306-1308)GGC>GGT	p.G436G	SERPINA10_uc001ycu.3_Silent_p.G436G	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	436					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		TCACCACCCTGCCCAGAAACA	0.448000													22	81					0	0	0.005443	0	0
SERPINA9	327657	broad.mit.edu	37	14	94935623	94935623	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:94935623C>T	uc001ydf.2	-	2	770	c.609G>A	c.(607-609)GGG>GGA	p.G203G	SERPINA9_uc001yde.2_Silent_p.G103G|SERPINA9_uc010avc.2_Silent_p.G54G|SERPINA9_uc001ydg.2_Silent_p.G167G|SERPINA9_uc001ydh.1_Silent_p.G203G|SERPINA9_uc001ydi.1_Silent_p.G167G	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	185					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		CTACAACCTTCCCTTGGGTCT	0.438000													53	142					0	0	0.014410	0	0
SERPINA13	388007	broad.mit.edu	37	14	95109850	95109850	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:95109850G>A	uc001ydt.2	+	3	887	c.799G>A	c.(799-801)GAG>AAG	p.E267K		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						CAGCCCAAAGGAGTTCTTTGT	0.582000													12	26					0	0	0.002450	0	0
AK7	122481	broad.mit.edu	37	14	96944806	96944806	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:96944806C>T	uc001yfn.2	+	15	1604	c.1560C>T	c.(1558-1560)TTC>TTT	p.F520F		NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	520					cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		CCCCAGAATTCGTTTGTGCAC	0.552000													37	103					0	0	0.010771	0	0
ADAM6	8755	broad.mit.edu	37	14	106236037	106236037	+	RNA	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:106236037T>A	uc010tyt.1	-	3616		c.57907A>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CTGGGAGGGCTTTGTTGGAGA	0.592000													116	290					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106833374	106833374	+	Splice_Site	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:106833374G>A	uc010tyt.1	-	321		c.12474_splice	c.e321+1		uc001ysx.1_RNA					Parts of antibodies, mostly variable regions.												0						TGTAGGTGATGATCCATCACA	0.493000													8	13					0	0	0.006214	0	0
ADAM6	8755	broad.mit.edu	37	14	106926337	106926337	+	RNA	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr14:106926337G>A	uc010tyt.1	-	235		c.10218C>T			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						CAACTAATAAGAGAGACCCAC	0.507000													58	142					0	0	0.014410	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414384	22414384	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:22414384G>A	uc001yuf.2	+	1	683	c.683G>A	c.(682-684)TGA>TAA	p.*228*		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CACATAGCCTGAAAAAGGGCA	0.284000													5	19					0	0	0.000602	0	0
C15orf2	23742	broad.mit.edu	37	15	24922704	24922704	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:24922704C>T	uc001ywo.2	+	1	2164	c.1690C>T	c.(1690-1692)CAC>TAC	p.H564Y		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	564					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CGCATCTGCCCACCTAACCTC	0.483000													50	104					0	0	0.014410	0	0
GREM1	26585	broad.mit.edu	37	15	33022961	33022961	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:33022961G>A	uc001zhe.1	+	2	229	c.70G>A	c.(70-72)GGG>AGG	p.G24R	GREM1_uc001zhd.1_Intron|GREM1_uc010uby.1_Missense_Mutation_p.G24R	NM_013372	NP_037504	O60565	GREM1_HUMAN	gremlin-1 precursor	24					negative regulation of BMP signaling pathway|nervous system development|regulation of epithelial to mesenchymal transition	extracellular space	cytokine activity				0		all_lung(180;1.49e-09)		all cancers(64;2.97e-18)|Epithelial(43;3.15e-12)|GBM - Glioblastoma multiforme(186;2.32e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0107)		GGCTGCTGAAGGGAAAAAGAA	0.602000													33	44					0	0	0.003755	0	0
GREM1	26585	broad.mit.edu	37	15	33023430	33023430	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:33023430C>T	uc001zhe.1	+	2	698	c.539C>T	c.(538-540)TCC>TTC	p.S180F	GREM1_uc001zhd.1_Missense_Mutation_p.S110F|GREM1_uc010uby.1_Missense_Mutation_p.S139F	NM_013372	NP_037504	O60565	GREM1_HUMAN	gremlin-1 precursor	180	CTCK.				negative regulation of BMP signaling pathway|nervous system development|regulation of epithelial to mesenchymal transition	extracellular space	cytokine activity				0		all_lung(180;1.49e-09)		all cancers(64;2.97e-18)|Epithelial(43;3.15e-12)|GBM - Glioblastoma multiforme(186;2.32e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0107)		CGTTGCATATCCATCGATTTG	0.478000													23	66					0	0	0.003954	0	0
UNC13C	440279	broad.mit.edu	37	15	54305220	54305220	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:54305220G>A	uc002ack.2	+	1	120	c.120G>A	c.(118-120)AAG>AAA	p.K40K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	40					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGCAGAAAAAGGATCAAGACT	0.368000													21	78					0	0	0.014323	0	0
UNC13C	440279	broad.mit.edu	37	15	54527229	54527229	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:54527229G>A	uc002ack.2	+	4	3073	c.3073G>A	c.(3073-3075)GCT>ACT	p.A1025T		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1025					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTCTTTCAGGGCTGGAGGTGG	0.368000													24	46					0	0	0.003954	0	0
UNC13C	440279	broad.mit.edu	37	15	54919198	54919198	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:54919198G>A	uc002ack.2	+	31	6532	c.6532G>A	c.(6532-6534)GAT>AAT	p.D2178N	UNC13C_uc002acm.2_Missense_Mutation_p.D99N	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2178					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TATCTCTATGGATGAAACTGG	0.383000													31	58					0	0	0.013726	0	0
NARG2	79664	broad.mit.edu	37	15	60728370	60728370	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:60728370C>T	uc002agp.2	-	13	2717	c.2482G>A	c.(2482-2484)GAA>AAA	p.E828K	NARG2_uc002ago.2_Missense_Mutation_p.E691K	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	828						nucleus				ovary(1)|lung(1)	2						TCTTTTAATTCTTCTGAGGTA	0.274000													8	20					0	0	0.010729	0	0
CORO2B	10391	broad.mit.edu	37	15	69011509	69011509	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:69011509C>T	uc002arj.3	+	10	1136	c.1107C>T	c.(1105-1107)TAC>TAT	p.Y369Y	CORO2B_uc010bic.2_Silent_p.Y364Y|CORO2B_uc002ark.2_Silent_p.Y136Y	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	369					actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						AAGACATTTACCCAATGACAC	0.527000													77	203					0	0	0.014410	0	0
GLCE	26035	broad.mit.edu	37	15	69548365	69548365	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:69548365G>A	uc002ary.1	+	3	448	c.220G>A	c.(220-222)GAG>AAG	p.E74K		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	74	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						ACAACAGTCTGAGGAAGCATT	0.473000													29	92					0	0	0.003271	0	0
ARID3B	10620	broad.mit.edu	37	15	74883771	74883771	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:74883771G>A	uc002aye.2	+	6	1362	c.1161G>A	c.(1159-1161)AGG>AGA	p.R387R	ARID3B_uc002ayd.2_Silent_p.R387R|ARID3B_uc010bjs.1_Silent_p.R92R	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	387					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						CCACTCTCAGGAAAGGTCAGC	0.562000													57	88					0	0	0.014410	0	0
PTPN9	5780	broad.mit.edu	37	15	75761126	75761126	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:75761126G>A	uc002bal.2	-	13	2274	c.1766C>T	c.(1765-1767)GCC>GTC	p.A589V		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	589						cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						ACTCTCCACGGCCAGCAGGTT	0.532000													85	130					0	0	0.014410	0	0
SNX33	257364	broad.mit.edu	37	15	75941532	75941533	+	Missense_Mutation	DNP	TT	GC	GC			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:75941532_75941533TT>GC	uc002bau.2	+	1	185_186	c.89_90TT>GC	c.(88-90)TTT>TGC	p.F30C	IMP3_uc002bat.2_5'Flank|SNX33_uc002bav.2_5'Flank	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	30	SH3.				cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						CTGGTCATCTTTAGCGAGACCT	0.569000													65	136					0	0	0.004672	0	0
CIB2	10518	broad.mit.edu	37	15	78401635	78401635	+	Silent	SNP	G	A	A	rs150519426		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:78401635G>A	uc002bdb.1	-	4	609	c.288C>T	c.(286-288)TCC>TCT	p.S96S	CIB2_uc002bdc.1_Silent_p.S53S|CIB2_uc010ums.1_Silent_p.S96S	NM_006383	NP_006374	O75838	CIB2_HUMAN	DNA-dependent protein kinase catalytic	96	EF-hand 1.						calcium ion binding				0						CGCAGAGCACGGAAAACATGT	0.537000													29	53					0	0	0.010818	0	0
WHAMM	123720	broad.mit.edu	37	15	83499402	83499403	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:83499402_83499403CC>TT	uc002bje.2	+	9	2199_2200	c.1693_1694CC>TT	c.(1693-1695)CCA>TTA	p.P565L		NM_001080435	NP_001073904	Q8TF30	WHAMM_HUMAN	WAS protein homolog associated with actin, golgi	565						cytoplasmic vesicle membrane|ER-Golgi intermediate compartment|Golgi apparatus	actin binding				0						ACCTGTGGCTCCAAACCTGCCA	0.505000													89	199					0	0	0.004672	0	0
ALPK3	57538	broad.mit.edu	37	15	85403135	85403135	+	Splice_Site	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:85403135G>A	uc002ble.2	+	8	4866	c.4699_splice	c.e8+1	p.V1567_splice		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3						heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGCCCTGAGGGTGAGTGTGCC	0.657000													50	110					0	0	0.014410	0	0
AGBL1	123624	broad.mit.edu	37	15	86940619	86940619	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:86940619C>T	uc002blz.1	+	17	2339	c.2259C>T	c.(2257-2259)ATC>ATT	p.I753I		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	753					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						ATCAGGTGATCACTGCTCGAG	0.428000													29	28					0	0	0.010818	0	0
ACAN	176	broad.mit.edu	37	15	89414753	89414753	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:89414753G>A	uc010upo.1	+	14	7461	c.7087G>A	c.(7087-7089)GAG>AAG	p.E2363K	ACAN_uc010upp.1_Missense_Mutation_p.E2325K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2363					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CACCCCCGAGGAGCAGGAGTT	0.632000													13	41					0	0	0.001855	0	0
SPATA8	145946	broad.mit.edu	37	15	97327388	97327388	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:97327388C>T	uc002bue.2	+	2	305	c.95C>T	c.(94-96)TCG>TTG	p.S32L	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	32										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			TGCAGAACCTCGTCGCGACAT	0.567000													29	55					0	0	0.004289	0	0
CACNA1H	8912	broad.mit.edu	37	16	1254232	1254232	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:1254232C>T	uc002cks.2	+	10	2473	c.2225C>T	c.(2224-2226)CCC>CTC	p.P742L	CACNA1H_uc002ckt.2_Missense_Mutation_p.P742L	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	742	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	CGCTGGGACCCCACGCGACCA	0.711000													4	12					0	0	0.000602	0	0
MRPS34	65993	broad.mit.edu	37	16	1822442	1822442	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:1822442T>A	uc002cmo.2	-	3	457	c.437A>T	c.(436-438)GAG>GTG	p.E146V	NME3_uc002cmm.2_5'Flank|NME3_uc010brv.2_5'Flank|MRPS34_uc002cmn.2_Missense_Mutation_p.E12V|MRPS34_uc002cmp.1_Missense_Mutation_p.E153V|EME2_uc002cmq.1_5'Flank|EME2_uc010brw.1_5'Flank	NM_023936	NP_076425	P82930	RT34_HUMAN	mitochondrial ribosomal protein S34	146						mitochondrion|ribosome	protein binding			skin(2)	2						GGCCTCCTCCTCGTGCTTGGG	0.627000													36	114					0	0	0.006999	0	0
SRRM2	23524	broad.mit.edu	37	16	2812878	2812878	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:2812878C>T	uc002crk.2	+	11	2898	c.2349C>T	c.(2347-2349)TCC>TCT	p.S783S	SRRM2_uc002crj.1_Silent_p.S687S|SRRM2_uc002crl.1_Silent_p.S783S|SRRM2_uc010bsu.1_Silent_p.S687S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	783	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CAGGGTCTTCCCCATGCCCTA	0.532000													81	204					0	0	0.014410	0	0
ABCC6	368	broad.mit.edu	37	16	16302704	16302704	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:16302704C>A	uc002den.3	-	7	712	c.675G>T	c.(673-675)AGG>AGT	p.R225S	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Missense_Mutation_p.R237S	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	225	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		TCCTGTATCCCCTCCAGACCA	0.438000													12	31					1.30897e-18	1.33629e-18	0.009535	1	0
TMC5	79838	broad.mit.edu	37	16	19474686	19474686	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:19474686C>T	uc002dgc.3	+	7	1982	c.1233C>T	c.(1231-1233)TCC>TCT	p.S411S	TMC5_uc010vaq.1_Silent_p.S411S|TMC5_uc002dgb.3_Silent_p.S411S|TMC5_uc010var.1_Silent_p.S411S|TMC5_uc002dgd.1_Silent_p.S165S|TMC5_uc002dge.3_Silent_p.S165S|TMC5_uc002dgf.3_Silent_p.S94S|TMC5_uc002dgg.3_Silent_p.S52S	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	411	Extracellular (Potential).					integral to membrane				skin(1)	1						ACTCCATTTCCCGGGTAAGTC	0.458000													31	88					0	0	0.004289	0	0
ACSM1	116285	broad.mit.edu	37	16	20648709	20648709	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:20648709G>A	uc002dhm.1	-	8	1249	c.1181C>T	c.(1180-1182)CCA>CTA	p.P394L	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.P394L	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	394					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GTCGTAGGGTGGAGTGGCCTT	0.537000													34	100					0	0	0.011902	0	0
ZP2	7783	broad.mit.edu	37	16	21209161	21209161	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:21209161G>T	uc002dii.2	-	18	2021	c.2021C>A	c.(2020-2022)TCA>TAA	p.S674*	ZP2_uc010bwn.1_Nonsense_Mutation_p.S704*	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	674	Extracellular (Potential).				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		TAGATCAGATGAGCCGACACC	0.483000													38	89					2.64894e-19	2.70856e-19	0.014410	1	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251594	25251594	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:25251594G>A	uc002dod.3	-	7	2854	c.2447C>T	c.(2446-2448)TCA>TTA	p.S816L	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.S612L	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	816	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		ACCAAAATTTGAGGAGTCATT	0.428000													23	55					0	0	0.005443	0	0
SRCAP	10847	broad.mit.edu	37	16	30749171	30749171	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:30749171C>G	uc002dze.1	+	34	8195	c.7810C>G	c.(7810-7812)CCT>GCT	p.P2604A	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P2399A	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2604	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TTCTCTCACCCCTTCTGCACC	0.557000													21	61					0	0	0.004656	0	0
PRSS53	339105	broad.mit.edu	37	16	31098164	31098164	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:31098164C>T	uc002eaq.2	-	4	298	c.298G>A	c.(298-300)GAG>AAG	p.E100K	PRSS53_uc002ear.2_5'UTR	NM_001039503	NP_001034592	Q2L4Q9	PRS53_HUMAN	polyserase 3 precursor	100	Peptidase S1 1.				proteolysis	extracellular region	serine-type endopeptidase activity				0						CTGAGTCCCTCACGCTGCAGA	0.627000													25	47					0	0	0.007291	0	0
ZNF267	10308	broad.mit.edu	37	16	31926241	31926242	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:31926241_31926242CC>TT	uc002ecs.3	+	4	880_881	c.671_672CC>TT	c.(670-672)ACC>ATT	p.T224I		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	224					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						TCTGAAAAAACCTTGAACCAAA	0.302000													4	14					0	0	0.004672	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404060	34404060	+	RNA	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:34404060C>T	uc002edv.1	-	1		c.703G>A				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						TATGCGCCAACCCTATTTCAG	0.632000													7	12					0	0	0.006214	0	0
CDH1	999	broad.mit.edu	37	16	68853245	68853245	+	Missense_Mutation	SNP	C	T	T	rs148400889		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:68853245C>T	uc002ewg.1	+	11	1752	c.1628C>T	c.(1627-1629)TCC>TTC	p.S543F	CDH1_uc010vlj.1_Intron|CDH1_uc010cfg.1_Missense_Mutation_p.S482F	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	543	Extracellular (Potential).|Cadherin 4.			S -> F (in Ref. 2; CAA79356).	adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding	p.S543fs*14(1)		breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		GGTGCCATTTCCACTCGGGCT	0.512000			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				34	58					0	0	0.005524	0	0
TMCO7	79613	broad.mit.edu	37	16	68961870	68961870	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:68961870C>T	uc002ewi.3	+	13	2539	c.2527C>T	c.(2527-2529)CTT>TTT	p.L843F		NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	843						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		CCAAGAGGTTCTTTTGTCAGC	0.488000													10	10					0	0	0.001855	0	0
HYDIN	54768	broad.mit.edu	37	16	70995892	70995892	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:70995892C>T	uc002ezr.2	-	38	6063	c.5935G>A	c.(5935-5937)GAG>AAG	p.E1979K		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1980	Poly-Glu.									ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGCTTTCCTCATCCTCCTCT	0.458000													19	58					0	0	0.010818	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77401502	77401502	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:77401502C>T	uc002ffc.3	-	4	1033	c.614G>A	c.(613-615)AGG>AAG	p.R205K	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	205					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CTCTGCTGTCCTTTTGTACAG	0.537000													22	63					0	0	0.003330	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77465333	77465333	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:77465333C>T	uc002ffc.3	-	3	773	c.354G>A	c.(352-354)TTG>TTA	p.L118L	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	118					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AGTGACTGCTCAAAATCGCCG	0.473000													52	102					0	0	0.014410	0	0
VAT1L	57687	broad.mit.edu	37	16	77850940	77850940	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:77850940G>A	uc002ffg.1	+	2	453	c.356G>A	c.(355-357)GGA>GAA	p.G119E		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	119							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						AGCGTGAAAGGATATGAGGTA	0.428000													49	138					0	0	0.014410	0	0
CDYL2	124359	broad.mit.edu	37	16	80718528	80718528	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:80718528G>A	uc002ffs.2	-	2	628	c.523C>T	c.(523-525)CAT>TAT	p.H175Y		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	175						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						CCAGGCTGATGGGACCCATTT	0.502000													42	66					0	0	0.010771	0	0
USP10	9100	broad.mit.edu	37	16	84808815	84808815	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:84808815C>T	uc002fii.2	+	13	2335	c.2193C>T	c.(2191-2193)ACC>ACT	p.T731T	USP10_uc010voe.1_Silent_p.T735T|USP10_uc010vof.1_Silent_p.T293T|USP10_uc002fij.2_Silent_p.T257T	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	731					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						GCCACCGAACCTATCGGCTCT	0.398000													23	42					0	0	0.008361	0	0
MYO1C	4641	broad.mit.edu	37	17	1384096	1384096	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:1384096G>A	uc002fsp.2	-	6	931	c.711C>T	c.(709-711)TTC>TTT	p.F237F	MYO1C_uc002fsn.2_Silent_p.F218F|MYO1C_uc002fso.2_Silent_p.F202F|MYO1C_uc010vqj.1_Silent_p.F202F|MYO1C_uc010vqk.1_Silent_p.F213F	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	237	Myosin head-like.				mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		AGAAGATGTGGAAGTTCCGCT	0.612000													67	51					0	0	0.014410	0	0
NLGN2	57555	broad.mit.edu	37	17	7318850	7318850	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:7318850C>T	uc002ggt.1	+	6	1131	c.1058C>T	c.(1057-1059)CCC>CTC	p.P353L		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	353	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				GCCTTTGGGCCCGTGGTGGAT	0.612000													22	36					0	0	0.002780	0	0
TP53	7157	broad.mit.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:7578263G>A	uc002gim.2	-	6	780	c.586C>T	c.(586-588)CGA>TGA	p.R196*	TP53_uc002gig.1_Nonsense_Mutation_p.R196*|TP53_uc002gih.2_Nonsense_Mutation_p.R196*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.R64*|TP53_uc010cng.1_Nonsense_Mutation_p.R64*|TP53_uc002gii.1_Nonsense_Mutation_p.R64*|TP53_uc010cnh.1_Nonsense_Mutation_p.R196*|TP53_uc010cni.1_Nonsense_Mutation_p.R196*|TP53_uc002gij.2_Nonsense_Mutation_p.R196*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.R103*|TP53_uc002gio.2_Nonsense_Mutation_p.R64*|TP53_uc010vug.1_Nonsense_Mutation_p.R157*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	196	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> S (in a sporadic cancer; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R196*(125)|p.R196P(12)|p.0?(7)|p.R196R(5)|p.R196fs*51(4)|p.A189_V197delAPPQHLIRV(4)|p.R196Q(3)|p.K164_P219del(1)|p.R196L(1)|p.I195fs*50(1)|p.P191fs*6(1)|p.I195_G199delIRVEG(1)|p.R64*(1)|p.I195fs*12(1)|p.R103*(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCTTCCACTCGGATAAGATGC	0.552000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			28	23					0	0	0.005524	0	0
MYH4	4622	broad.mit.edu	37	17	10357125	10357125	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:10357125G>A	uc002gmn.2	-	23	2880	c.2769C>T	c.(2767-2769)ATC>ATT	p.I923I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	923	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TTACCTCTTTGATTTTGGCCT	0.423000													134	126					0	0	0.014410	0	0
LGALS9C	654346	broad.mit.edu	37	17	18389403	18389403	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:18389403G>A	uc002gtw.2	+	3	357	c.287G>A	c.(286-288)GGG>GAG	p.G96E	LGALS9C_uc010vyb.1_Missense_Mutation_p.G8E	NM_001040078	NP_001035167	Q6DKI2	LEG9C_HUMAN	galectin 9 like	96	Galectin 1.						sugar binding			ovary(1)	1						TTCCAGAAGGGGATGCCCTTT	0.582000													34	14					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	17	20744472	20744472	+	RNA	SNP	T	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:20744472T>G	uc010crb.1	+	1		c.132T>G								Homo sapiens cDNA clone IMAGE:6269068, partial cds.																		TACACCCTGGTGCCTGAGCCC	0.746000													6	6					0	0	0.003080	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319545	21319545	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:21319545C>T	uc002gyv.1	+	3	1596	c.891C>T	c.(889-891)GTC>GTT	p.V297V		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	297	Cytoplasmic (By similarity).			V -> I (in Ref. 2; AAC50615).	blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	AGATCGTGGTCATCCTGGAAG	0.622000										Prostate(3;0.18)			4	128					0	0	0.013537	0	0
SPAG5	10615	broad.mit.edu	37	17	26919204	26919204	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:26919204G>A	uc002hbq.2	-	3	1150	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	353					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					CAGCATGACGGAGGTATTTAC	0.527000													54	34					0	0	0.014410	0	0
MMP28	79148	broad.mit.edu	37	17	34093640	34093640	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:34093640C>T	uc002hjy.1	-	10	1701	c.1442G>A	c.(1441-1443)CGA>CAA	p.R481Q	MMP28_uc002hjw.1_RNA|MMP28_uc002hjz.1_RNA	NM_024302	NP_077278	Q9H239	MMP28_HUMAN	matrix metalloproteinase 28 isoform 1	481	Hemopexin-like 4.				proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GCGGTCATCTCGGAAGAAGAT	0.672000													14	10					0	0	0.008871	0	0
MRPL45	84311	broad.mit.edu	37	17	36478143	36478143	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:36478143C>T	uc002hpy.2	+	7	947	c.795C>T	c.(793-795)ATC>ATT	p.I265I		NM_032351	NP_115727	Q9BRJ2	RM45_HUMAN	mitochondrial ribosomal protein L45 precursor	265					intracellular protein transport|translation	mitochondrial inner membrane presequence translocase complex|ribosome	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|structural constituent of ribosome				0	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				ATACCAAGATCGTTCCCCCAT	0.502000											OREG0024353	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	27					0	0	0.011902	0	0
KRT16	3868	broad.mit.edu	37	17	39768589	39768589	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:39768589T>C	uc002hxg.3	-	1	491	c.352A>G	c.(352-354)AAG>GAG	p.K118E	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	118	Coil 1A.|Rod.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				ATGGTCACCTTCTCACTGCCC	0.358000													26	29					0	0	0.014410	0	0
MRPS23	51649	broad.mit.edu	37	17	55926609	55926609	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:55926609C>T	uc002ivc.2	-	2	235	c.207G>A	c.(205-207)CGG>CGA	p.R69R		NM_016070	NP_057154	Q9Y3D9	RT23_HUMAN	mitochondrial ribosomal protein S23	69					translation	intermediate filament cytoskeleton|mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0	Breast(9;8.75e-08)					ACGCTCTAATCCGATCCTCGT	0.537000													39	44					0	0	0.014410	0	0
ACE	1636	broad.mit.edu	37	17	61571353	61571353	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:61571353C>T	uc002jau.1	+	21	3229	c.3207C>T	c.(3205-3207)GTC>GTT	p.V1069V	ACE_uc002jav.1_Silent_p.V495V|ACE_uc010ddv.1_Silent_p.V296V|ACE_uc010wpj.1_Silent_p.V495V|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Silent_p.V315V	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1069	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GCTACCTCGTCGATCAGTGGC	0.537000													25	29					0	0	0.005443	0	0
LOC651250	651250	broad.mit.edu	37	17	66131364	66131364	+	RNA	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:66131364C>T	uc002jgq.2	+	6		c.10487C>T			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						TCCAGGGAGTCCTTCACCTCT	0.572000													11	6					0	0	0.003163	0	0
SDK2	54549	broad.mit.edu	37	17	71364676	71364676	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:71364676G>A	uc010dfm.2	-	37	5037	c.5037C>T	c.(5035-5037)TTC>TTT	p.F1679F	SDK2_uc002jjt.3_Silent_p.F819F|SDK2_uc010dfn.2_Silent_p.F1358F	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1679	Fibronectin type-III 11.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						TCTCAGCCAGGAAAAGCGTCT	0.587000													8	5					0	0	0.004482	0	0
CD300LD	100131439	broad.mit.edu	37	17	72584882	72584882	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:72584882C>T	uc002jkz.2	-	2	176	c.147G>A	c.(145-147)TTG>TTA	p.L49L	C17orf77_uc002jla.1_Intron	NM_001115152	NP_001108624	Q6UXZ3	CLM4_HUMAN	CD300 molecule-like family member d precursor	49	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity				0						ACCGCCACTTCAAGTAGGTCT	0.483000													76	61					0	0	0.014410	0	0
USH1G	124590	broad.mit.edu	37	17	72915642	72915642	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:72915642C>T	uc002jme.1	-	2	1472	c.1289G>A	c.(1288-1290)AGC>AAC	p.S430N	USH1G_uc010wro.1_Missense_Mutation_p.S327N	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	430	SAM.				equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					CAGTGGGACGCTGATGCTGCG	0.662000													20	28					0	0	0.012319	0	0
ITGB4	3691	broad.mit.edu	37	17	73728265	73728265	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:73728265C>G	uc002jpg.2	+	12	1586	c.1399C>G	c.(1399-1401)CGC>GGC	p.R467G	ITGB4_uc002jph.2_Missense_Mutation_p.R467G|ITGB4_uc010dgo.2_Missense_Mutation_p.R467G|ITGB4_uc002jpi.3_Missense_Mutation_p.R467G|ITGB4_uc010dgp.1_Missense_Mutation_p.R467G|ITGB4_uc002jpj.2_Missense_Mutation_p.R467G|ITGB4_uc010wsh.1_Missense_Mutation_p.R22G	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	467	I.|Extracellular (Potential).|Cysteine-rich tandem repeats.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCGGTCAGCTCGCTGCAGCTT	0.637000													74	33					0	0	0.014410	0	0
TMEM105	284186	broad.mit.edu	37	17	79287643	79287643	+	Silent	SNP	C	T	T	rs140676006	byFrequency	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:79287643C>T	uc002kad.1	-	3	748	c.198G>A	c.(196-198)GGG>GGA	p.G66G		NM_178520	NP_848615	Q8N8V8	TM105_HUMAN	transmembrane protein 105	66						integral to membrane				ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.0892)			CAGCACAGTCCCCCCAAGGAG	0.647000													42	41					0	0	0.010771	0	0
FOXK2	3607	broad.mit.edu	37	17	80543973	80543973	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:80543973G>A	uc002kfn.2	+	7	1644	c.1473G>A	c.(1471-1473)GCG>GCA	p.A491A	FOXK2_uc002kfm.1_Silent_p.A491A|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	491					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			TGGCCCCAGCGAACACGTACA	0.647000													32	21					0	0	0.006230	0	0
FAM38B	63895	broad.mit.edu	37	18	10681742	10681742	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr18:10681742G>A	uc002kor.3	-	9	1367	c.1227C>T	c.(1225-1227)TTC>TTT	p.F409F	FAM38B_uc002koq.2_Silent_p.F244F	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2452						integral to membrane	ion channel activity			ovary(1)	1						CACTCATTGTGAAAATAGGCT	0.393000													25	50					0	0	0.010818	0	0
DSG1	1828	broad.mit.edu	37	18	28914104	28914104	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr18:28914104G>A	uc002kwp.2	+	8	1156	c.944G>A	c.(943-945)GGA>GAA	p.G315E		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	315	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGAAATGAAGGAAATTGGTTT	0.299000													21	61					0	0	0.012319	0	0
NOL4	8715	broad.mit.edu	37	18	31537398	31537398	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr18:31537398G>A	uc010dmi.2	-	8	1549	c.1320C>T	c.(1318-1320)ATC>ATT	p.I440I	NOL4_uc010xbs.1_Silent_p.I155I|NOL4_uc002kxr.3_Intron|NOL4_uc010xbt.1_Silent_p.I366I|NOL4_uc010dmh.2_Intron|NOL4_uc010xbu.1_Intron|NOL4_uc002kxt.3_Intron|NOL4_uc010xbv.1_Intron	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	440						nucleolus	RNA binding			ovary(3)	3						ATGAGTCAATGATAGCCTGGA	0.468000													9	44					0	0	0.006214	0	0
POLI	11201	broad.mit.edu	37	18	51820391	51820391	+	Missense_Mutation	SNP	C	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr18:51820391C>G	uc002lfj.3	+	10	1845	c.1777C>G	c.(1777-1779)CAG>GAG	p.Q593E	POLI_uc010xds.1_Missense_Mutation_p.Q514E|POLI_uc002lfk.3_Missense_Mutation_p.Q490E|POLI_uc010dpg.2_Missense_Mutation_p.Q189E	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	593	Ser-rich.				DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		CAGTAGCAAACAGGTATCCTC	0.348000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					13	40					0	0	0.004007	0	0
CDH20	28316	broad.mit.edu	37	18	59167683	59167683	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr18:59167683G>A	uc010dps.1	+	3	621	c.609G>A	c.(607-609)GTG>GTA	p.V203V	CDH20_uc002lif.2_Silent_p.V197V	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	203	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				GTGCCAGGGTGGTGTACAGCA	0.488000													51	103					0	0	0.014410	0	0
SERPINB2	5055	broad.mit.edu	37	18	61564393	61564393	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr18:61564393G>A	uc010xeu.1	+	5	690	c.357G>A	c.(355-357)GGG>GGA	p.G119G	SERPINB2_uc002ljo.2_Silent_p.G119G|SERPINB2_uc010dqh.2_Silent_p.G49G|SERPINB2_uc002ljp.1_5'UTR|SERPINB2_uc002ljq.1_5'UTR	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	119					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	CATCCACAGGGAATTATTTAC	0.408000													27	80					0	0	0.007291	0	0
MIER2	54531	broad.mit.edu	37	19	325681	325681	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:325681G>A	uc002lok.1	-	7	618	c.609C>T	c.(607-609)TTC>TTT	p.F203F		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	203	ELM2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTCAGCTTGGAACTGAGGTC	0.602000													34	71					0	0	0.014410	0	0
TJP3	27134	broad.mit.edu	37	19	3734316	3734316	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:3734316C>T	uc010xhv.1	+	7	968	c.968C>T	c.(967-969)CCC>CTC	p.P323L	TJP3_uc010xhs.1_Intron|TJP3_uc010xht.1_Intron|TJP3_uc010xhu.1_Intron|TJP3_uc010xhw.1_Intron	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	304						tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGTCCTCTCCCCCTGCAGAC	0.602000													16	41					0	0	0.006122	0	0
ATCAY	85300	broad.mit.edu	37	19	3907764	3907764	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:3907764C>T	uc002lyy.3	+	5	821	c.391C>T	c.(391-393)CCC>TCC	p.P131S	ATCAY_uc010xhz.1_Missense_Mutation_p.P137S|ATCAY_uc010dts.2_5'Flank	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	131					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		CAAGAACATGCCCGGGGACAG	0.667000													24	46					0	0	0.009535	0	0
FSD1	79187	broad.mit.edu	37	19	4317241	4317241	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:4317241G>A	uc002lzy.2	+	8	916	c.763G>A	c.(763-765)GGA>AGA	p.G255R	FSD1_uc002lzz.2_Missense_Mutation_p.G255R|FSD1_uc002maa.2_Missense_Mutation_p.G68R	NM_024333	NP_077309	Q9BTV5	FSD1_HUMAN	fibronectin type III and SPRY domain containing	255	Fibronectin type-III.				cell division|mitosis	cleavage furrow|microtubule|microtubule organizing center|nucleus				skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.034)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCAGTTGCAGGAGAGTTCTC	0.517000													23	70					0	0	0.003954	0	0
KDM4B	23030	broad.mit.edu	37	19	5131448	5131448	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:5131448G>A	uc002mbq.3	+	12	1903	c.1677G>A	c.(1675-1677)CCG>CCA	p.P559P	KDM4B_uc010xim.1_Silent_p.P593P|KDM4B_uc002mbr.3_Silent_p.P317P	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	559					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						AGAAGGGTCCGACCTGGAAGG	0.647000													25	53					0	0	0.005443	0	0
ACSBG2	81616	broad.mit.edu	37	19	6187651	6187651	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:6187651G>A	uc002mef.1	+	13	1949	c.1722G>A	c.(1720-1722)CTG>CTA	p.L574L	ACSBG2_uc002mee.1_Silent_p.L387L|ACSBG2_uc002meg.1_Silent_p.L574L|ACSBG2_uc002meh.1_Silent_p.L574L|ACSBG2_uc002mei.1_Silent_p.L524L|ACSBG2_uc010xiz.1_Intron	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	574					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TGGACAAGCTGAACTTCGAGG	0.592000													11	38					0	0	0.010729	0	0
EMR1	2015	broad.mit.edu	37	19	6906493	6906493	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:6906493C>T	uc002mfw.2	+	9	1037	c.999C>T	c.(997-999)ATC>ATT	p.I333I	EMR1_uc010dvc.2_Silent_p.I333I|EMR1_uc010dvb.2_Silent_p.I281I|EMR1_uc010xji.1_Silent_p.I192I|EMR1_uc010xjj.1_Silent_p.I156I	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	333	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					ATAAGCAGATCCAGCAATGCC	0.393000													26	50					0	0	0.008361	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8662151	8662151	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:8662151G>A	uc002mkj.1	-	7	1135	c.861C>T	c.(859-861)CTC>CTT	p.L287L	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	287	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGCGAGTTACGAGGATGTTAA	0.577000													16	28					0	0	0.007413	0	0
ACTL9	284382	broad.mit.edu	37	19	8808404	8808404	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:8808404G>A	uc002mkl.2	-	1	769	c.648C>T	c.(646-648)CAC>CAT	p.H216H		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	216						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						GCTCCGTGGCGTGGAGCAGGT	0.682000													15	47					0	0	0.004990	0	0
MUC16	94025	broad.mit.edu	37	19	8976592	8976592	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:8976592C>T	uc002mkp.2	-	74	42588	c.42384G>A	c.(42382-42384)CTG>CTA	p.L14128L	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.L928L|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14159	SEA 14.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGGGAGATCAGTTGGCAAC	0.562000													8	21					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9016683	9016683	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:9016683G>A	uc002mkp.2	-	28	38258	c.38054C>T	c.(38053-38055)CCA>CTA	p.P12685L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12687	Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGGAGGATGGAGTCCCTGA	0.483000													12	32					0	0	0.004990	0	0
MUC16	94025	broad.mit.edu	37	19	9049091	9049091	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:9049091G>A	uc002mkp.2	-	5	32744	c.32540C>T	c.(32539-32541)TCA>TTA	p.S10847L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10849	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGGTGTCTGATTTACTATG	0.493000													35	95					0	0	0.009718	0	0
MUC16	94025	broad.mit.edu	37	19	9070835	9070835	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:9070835G>A	uc002mkp.2	-	3	16815	c.16611C>T	c.(16609-16611)CCC>CCT	p.P5537P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5539	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCTATTGTGGGCCGATCAA	0.483000													39	73					0	0	0.008740	0	0
OR7G1	125962	broad.mit.edu	37	19	9225634	9225634	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:9225634C>T	uc002mks.1	-	1	806	c.806G>A	c.(805-807)CGA>CAA	p.R269Q		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AGCAGTAATTCGGGAAGACTC	0.458000													23	52					0	0	0.003954	0	0
COL5A3	50509	broad.mit.edu	37	19	10084864	10084864	+	Missense_Mutation	SNP	C	T	T	rs147491932		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:10084864C>T	uc002mmq.1	-	47	3573	c.3487G>A	c.(3487-3489)GGA>AGA	p.G1163R		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1163	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCGACGTCTCCGACCTCCCCT	0.587000													30	54					0	0	0.006999	0	0
LDLR	3949	broad.mit.edu	37	19	11224428	11224428	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:11224428C>T	uc002mqk.3	+	10	1744	c.1576C>T	c.(1576-1578)CCT>TCT	p.P526S	LDLR_uc010xlk.1_Missense_Mutation_p.P526S|LDLR_uc010xll.1_Missense_Mutation_p.P485S|LDLR_uc010xlm.1_Missense_Mutation_p.P379S|LDLR_uc010xln.1_Missense_Mutation_p.P399S|LDLR_uc010xlo.1_Missense_Mutation_p.P358S	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	526	Extracellular (Potential).|LDL-receptor class B 3.		P -> S (in Cincinnati-3).		cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	CGTGGTGGATCCTGTTCATGG	0.522000													23	40					0	0	0.004656	0	0
KLF1	10661	broad.mit.edu	37	19	12995729	12995729	+	Silent	SNP	G	A	A	rs144695155		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:12995729G>A	uc002mvo.2	-	3	1122	c.1059C>T	c.(1057-1059)CAC>CAT	p.H353H		NM_006563	NP_006554	Q13351	KLF1_HUMAN	erythroid Kruppel-like factor	353	C2H2-type 3.				erythrocyte differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0		Hepatocellular(1079;0.137)		GBM - Glioblastoma multiforme(1328;0.00016)|Lung(535;0.171)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAAGGCCAGGTGGTCAGAGC	0.567000													22	57					0	0	0.003954	0	0
SYCE2	256126	broad.mit.edu	37	19	13011310	13011310	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:13011310C>T	uc002mvr.2	-	4	474	c.459G>A	c.(457-459)GTG>GTA	p.V153V		NM_001105578	NP_001099048	Q6PIF2	SYCE2_HUMAN	synaptonemal complex central element protein 2	153					cell division	central element					0						ACACAGTCTCCACGCTGTGGC	0.527000													21	48					0	0	0.012319	0	0
NWD1	284434	broad.mit.edu	37	19	16910771	16910771	+	Silent	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:16910771C>A	uc002neu.3	+	17	3956	c.3534C>A	c.(3532-3534)GCC>GCA	p.A1178A	NWD1_uc002net.3_Silent_p.A1043A|NWD1_uc002nev.3_Silent_p.A972A			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1178	WD 9.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GCCTGCTGGCCCGCGGCGGGG	0.622000													16	52					2.37509e-13	2.41303e-13	0.010504	1	0
ZNF208	7757	broad.mit.edu	37	19	22155020	22155020	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:22155020T>G	uc002nqp.2	-	5	2665	c.2516A>C	c.(2515-2517)CAT>CCT	p.H839P	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CTCTCCAGCATGAGTTTTCTT	0.373000													15	22					0	0	0.004990	0	0
ZNF676	163223	broad.mit.edu	37	19	22363108	22363108	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:22363108G>A	uc002nqs.1	-	3	1729	c.1411C>T	c.(1411-1413)CAT>TAT	p.H471Y		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	471	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TCTGCAGCATGAATTCTCTTG	0.393000													41	117					0	0	0.011902	0	0
Unknown	0	broad.mit.edu	37	19	22784265	22784265	+	RNA	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:22784265G>A	uc002nqu.3	+	6		c.699G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		AGGAAGAGGAGGGAGCCCAGG	0.473000													3	3					0	0	0.004672	0	0
ZNF99	7652	broad.mit.edu	37	19	22939793	22939793	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:22939793C>T	uc010xrh.1	-	6	2538	c.2538G>A	c.(2536-2538)AGG>AGA	p.R846R		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TCTTATGTTTCCTAAGGGCTG	0.348000													30	46					0	0	0.008361	0	0
Unknown	0	broad.mit.edu	37	19	23328846	23328846	+	RNA	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:23328846C>T	uc002nrb.1	+	4		c.1199C>T								Homo sapiens cDNA FLJ16640 fis, clone TESTI4028938, moderately similar to Zinc finger protein 85.																		TAAAAGAATTCATAATGGAGA	0.353000													10	32					0	0	0.008291	0	0
ZNF675	171392	broad.mit.edu	37	19	23844924	23844924	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:23844924T>C	uc002nri.2	-	3	400	c.218A>G	c.(217-219)GAA>GGA	p.E73G		NM_138330	NP_612203	Q8TD23	ZN675_HUMAN	zinc finger protein 675	73	KRAB.				bone resorption|cytokine-mediated signaling pathway|hemopoiesis|I-kappaB kinase/NF-kappaB cascade|negative regulation of JNK cascade|negative regulation of osteoclast differentiation|negative regulation of protein kinase activity|negative regulation of transcription, DNA-dependent|regulation of ossification|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|kidney(1)	2		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ACCTGGGGGTTCATTCACCAT	0.418000													37	84					0	0	0.007835	0	0
CD22	933	broad.mit.edu	37	19	35823807	35823807	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:35823807G>A	uc010edt.2	+	3	469	c.392G>A	c.(391-393)CGA>CAA	p.R131Q	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Missense_Mutation_p.R131Q|CD22_uc010edv.2_Missense_Mutation_p.R131Q|CD22_uc002nzb.3_Missense_Mutation_p.R131Q	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	131	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	TGGATGGAACGAATACACCTC	0.552000													24	58					0	0	0.007291	0	0
WDR62	284403	broad.mit.edu	37	19	36595489	36595489	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:36595489C>T	uc002odc.2	+	31	4299	c.4208C>T	c.(4207-4209)CCC>CTC	p.P1403L	WDR62_uc002odd.2_Missense_Mutation_p.P1408L	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	1403					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GAAGCCCTGCCCCCATCTCCC	0.607000													27	39					0	0	0.005443	0	0
ZNF566	84924	broad.mit.edu	37	19	36940432	36940432	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:36940432G>A	uc002oea.3	-	5	786	c.704C>T	c.(703-705)ACC>ATC	p.T235I	ZNF566_uc010xte.1_Missense_Mutation_p.T235I|ZNF566_uc010xtf.1_Missense_Mutation_p.T236I|ZNF566_uc002oeb.3_Missense_Mutation_p.T235I|ZNF566_uc002oec.3_Missense_Mutation_p.T131I|ZNF566_uc010xtg.1_Missense_Mutation_p.T131I	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	235	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					ACAAATAAAGGTTTTTCCACA	0.403000													13	50					0	0	0.003163	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677213	37677213	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:37677213G>A	uc002ofq.2	-	5	1480	c.1226C>T	c.(1225-1227)TCG>TTG	p.S409L	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.S223L	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCATATATACGATTTTTCTCC	0.423000													28	67					0	0	0.010818	0	0
PRX	57716	broad.mit.edu	37	19	40900022	40900022	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:40900022G>A	uc002onr.2	-	7	4506	c.4237C>T	c.(4237-4239)CCC>TCC	p.P1413S	PRX_uc002onq.2_Missense_Mutation_p.P1274S|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1413					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GACACCCTGGGGAAGCGGAAC	0.662000													37	89					0	0	0.014410	0	0
LYPD4	147719	broad.mit.edu	37	19	42342324	42342324	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:42342324C>T	uc002orp.1	-	4	1207	c.223G>A	c.(223-225)GGA>AGA	p.G75R	LYPD4_uc002orq.1_Missense_Mutation_p.G40R	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	75						anchored to membrane|plasma membrane				ovary(1)	1						CCCACAACTCCCCTTGCAGTC	0.582000													7	25					0	0	0.003080	0	0
MEGF8	1954	broad.mit.edu	37	19	42841001	42841001	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:42841001T>A	uc002otl.3	+	7	1922	c.1287T>A	c.(1285-1287)GAT>GAA	p.D429E	MEGF8_uc002otm.3_5'UTR	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	429	Extracellular (Potential).|Kelch 4.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TCCACGTGGATCGGCATGTGT	0.502000													35	68					0	0	0.007835	0	0
PSG9	5678	broad.mit.edu	37	19	43766069	43766069	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:43766069C>T	uc002owd.3	-	3	751	c.652G>A	c.(652-654)GAA>AAA	p.E218K	PSG9_uc002owe.3_Missense_Mutation_p.E218K|PSG9_uc010xwm.1_Intron|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Missense_Mutation_p.E218K|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	218	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TTCCGTATTTCACATTCATAG	0.512000													140	337					0	0	0.014410	0	0
KCNJ14	3770	broad.mit.edu	37	19	48967815	48967815	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:48967815G>A	uc002pje.1	+	3	1497	c.1092G>A	c.(1090-1092)AAG>AAA	p.K364K	KCNJ14_uc002pjf.1_Silent_p.K364K	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	364	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		GCAGTGCTAAGGAGCTGGATG	0.542000													17	51					0	0	0.010504	0	0
FGF21	26291	broad.mit.edu	37	19	49259604	49259604	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:49259604C>T	uc002pkn.1	+	2	683	c.111C>T	c.(109-111)CTC>CTT	p.L37L	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkl.1_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Silent_p.L37L	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	37					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CCAGTCCTCTCCTGCAATTCG	0.627000													18	38					0	0	0.008871	0	0
KLK12	43849	broad.mit.edu	37	19	51535331	51535331	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:51535331G>A	uc002pvg.1	-	3	378	c.258C>T	c.(256-258)ATC>ATT	p.I86I	KLK12_uc010ycp.1_RNA|KLK12_uc010ycq.1_Intron|KLK12_uc010ycr.1_Intron|KLK12_uc010ycs.1_Intron|KLK12_uc002pvh.1_Silent_p.I86I|KLK12_uc002pvi.1_Silent_p.I86I|KLK12_uc002pvj.1_Intron	NM_145894	NP_665901	Q9UKR0	KLK12_HUMAN	kallikrein 12 isoform 2	86	Peptidase S1.				proteolysis	extracellular region|soluble fraction	serine-type endopeptidase activity			ovary(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00399)		CGCTGTGCCGGATCTGCTCGG	0.711000													3	11					0	0	0.009096	0	0
KLK14	43847	broad.mit.edu	37	19	51582886	51582886	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:51582886G>A	uc002pvs.1	-	5	553	c.334C>T	c.(334-336)CGT>TGT	p.R112C		NM_022046	NP_071329	Q9P0G3	KLK14_HUMAN	kallikrein 14 preproprotein	112	Peptidase S1.				epidermis morphogenesis|fertilization|negative regulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis|seminal clot liquefaction	extracellular space	serine-type endopeptidase activity			skin(1)	1		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00422)		GTCACCTGACGAACCACGCGC	0.652000													9	17					0	0	0.006214	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51958750	51958751	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:51958750_51958751CC>TA	uc002pwt.2	-	4	1039_1040	c.972_973GG>TA	c.(970-975)GGGGAA>GGTAAA	p.E325K	SIGLEC8_uc010yda.1_Missense_Mutation_p.E216K|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.E232K	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	325	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CAGGTGAATTCCCCTTCATCCC	0.649000													20	42					0	0	0.004672	0	0
ZNF616	90317	broad.mit.edu	37	19	52627300	52627300	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:52627300C>T	uc002pym.2	-	3	298	c.15G>A	c.(13-15)GGG>GGA	p.G5G	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		ATGTCAAATGCCCCTGAAATG	0.403000													44	75					0	0	0.014410	0	0
LILRB1	10859	broad.mit.edu	37	19	55144586	55144586	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:55144586G>A	uc002qgj.2	+	8	1418	c.1078G>A	c.(1078-1080)GAG>AAG	p.E360K	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.E360K|LILRB1_uc002qgk.2_Missense_Mutation_p.E360K|LILRB1_uc002qgm.2_Missense_Mutation_p.E360K|LILRB1_uc010erq.2_Missense_Mutation_p.E360K|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	360	Ig-like C2-type 4.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCTGACCAAGGAGGGGGCAGC	0.582000										HNSCC(37;0.09)			30	77					0	0	0.006320	0	0
LILRB4	11006	broad.mit.edu	37	19	55179098	55179098	+	Missense_Mutation	SNP	G	A	A	rs146325339	byFrequency	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:55179098G>A	uc002qgp.2	+	11	1416	c.1054G>A	c.(1054-1056)GAT>AAT	p.D352N	LILRB4_uc002qgq.2_Missense_Mutation_p.D351N|LILRB4_uc002qgr.2_Missense_Mutation_p.D394N|LILRB4_uc010ert.2_Missense_Mutation_p.D393N|LILRB4_uc010eru.2_Missense_Mutation_p.D382N	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	352	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GAGCCCACACGATGAAGACCC	0.567000													25	74					0	0	0.007291	0	0
IL11	3589	broad.mit.edu	37	19	55877462	55877462	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:55877462G>A	uc002qks.1	-	5	649	c.513C>T	c.(511-513)ATC>ATT	p.I171I	FAM71E2_uc002qkr.2_5'Flank|FAM71E2_uc002qkq.2_5'Flank|IL11_uc010yfx.1_Silent_p.I92I	NM_000641	NP_000632	P20809	IL11_HUMAN	interleukin 11 precursor	171					B cell differentiation|fat cell differentiation|megakaryocyte differentiation|negative regulation of hormone secretion|platelet activation|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity|growth factor activity|interleukin-11 receptor binding				0	Breast(117;0.191)	Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)	Oprelvekin(DB00038)	GGGCGGCCCTGATGCCCCCCC	0.572000													3	9					0	0	0.004672	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56735006	56735006	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:56735006C>T	uc002qmq.2	-	3	748	c.582G>A	c.(580-582)AGG>AGA	p.R194R	ZSCAN5A_uc010ygi.1_Silent_p.R77R|ZSCAN5A_uc002qmr.2_Silent_p.R194R|ZSCAN5A_uc002qms.1_Silent_p.R194R	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	194					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						TCACCTGCCTCCTGGACAATG	0.612000													15	35					0	0	0.004990	0	0
USP29	57663	broad.mit.edu	37	19	57640948	57640948	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:57640948C>T	uc002qny.2	+	4	1261	c.905C>T	c.(904-906)TCG>TTG	p.S302L		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	302					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTTTTACAATCGCTATTTGCA	0.453000													19	40					0	0	0.008871	0	0
APOB	338	broad.mit.edu	37	2	21239402	21239402	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:21239402C>T	uc002red.2	-	21	3369	c.3241G>A	c.(3241-3243)GAT>AAT	p.D1081N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1081					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTAGATTCATCATTAACTCTG	0.433000													25	29					0	0	0.005443	0	0
NLRC4	58484	broad.mit.edu	37	2	32476208	32476208	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:32476208C>T	uc002roi.2	-	4	971	c.725G>A	c.(724-726)AGG>AAG	p.R242K	NLRC4_uc002roj.1_Missense_Mutation_p.R242K|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	242	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GAAAAGAACCCTCTGCCGCAG	0.488000													34	44					0	0	0.005524	0	0
REG3A	5068	broad.mit.edu	37	2	79385524	79385524	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:79385524G>A	uc002sod.1	-	3	516	c.261C>T	c.(259-261)TTC>TTT	p.F87F	REG3A_uc002soe.1_Silent_p.F87F|REG3A_uc002sof.1_Silent_p.F87F	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	87	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						GGGAGGACACGAAGGATCCCT	0.562000													18	79					0	0	0.014323	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518063	84518063	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:84518063G>A	uc010ffz.1	+	1	258	c.121G>A	c.(121-123)GAA>AAA	p.E41K		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						ACTCTCAGCCGAAAAGTATAG	0.498000													13	76					0	0	0.001855	0	0
ANKRD36	375248	broad.mit.edu	37	2	97854837	97854837	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:97854837G>A	uc010yva.1	+	33	2401	c.2157G>A	c.(2155-2157)AAG>AAA	p.K719K	ANKRD36_uc002sxo.2_Intron|ANKRD36_uc002sxp.3_Intron|ANKRD36_uc002sxq.1_Intron	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	719											0						CTTCTCAGAAGCAACCAGCCT	0.308000													5	11					0	0	0.001168	0	0
REV1	51455	broad.mit.edu	37	2	100065964	100065964	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:100065964G>A	uc002tad.2	-	4	396	c.184C>T	c.(184-186)CCT>TCT	p.P62S	REV1_uc002tac.2_Missense_Mutation_p.P62S|REV1_uc002tae.1_Missense_Mutation_p.P41S	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	62	BRCT.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						TCAGCGGAAGGATCTGCaaaa	0.303000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					26	22					0	0	0.005443	0	0
SLC9A4	389015	broad.mit.edu	37	2	103149136	103149136	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:103149136C>T	uc002tbz.3	+	12	2843	c.2386C>T	c.(2386-2388)CAA>TAA	p.Q796*		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	796	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TCCTTTGCTCCAAAAAAAATA	0.473000													5	22					0	0	0.013537	0	0
RANBP2	5903	broad.mit.edu	37	2	109379960	109379960	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:109379960C>T	uc002tem.3	+	20	3091	c.2965C>T	c.(2965-2967)CAT>TAT	p.H989Y		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	989					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GATTGCAGCTCATGCTTCAAG	0.423000													45	38					0	0	0.014410	0	0
MARCO	8685	broad.mit.edu	37	2	119727901	119727901	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:119727901C>T	uc002tln.1	+	3	543	c.411C>T	c.(409-411)TTC>TTT	p.F137F	MARCO_uc010yyf.1_Silent_p.F59F	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	137	Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TAGACAACTTCACTCAGAACC	0.587000													4	9					0	0	0.009096	0	0
POTEE	445582	broad.mit.edu	37	2	132021833	132021833	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:132021833C>T	uc002tsn.2	+	15	2857	c.2805C>T	c.(2803-2805)TCC>TCT	p.S935S	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.S535S|POTEE_uc002tsl.2_Silent_p.S517S|POTEE_uc010fmy.1_Silent_p.S399S	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	935	Actin-like.						ATP binding				0						CCAGCTCCTCCCTAGAGAAGA	0.627000													7	223					0	0	0.001855	0	0
THSD7B	80731	broad.mit.edu	37	2	138169397	138169397	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:138169397G>A	uc002tva.1	+	13	2821	c.2821G>A	c.(2821-2823)GAT>AAT	p.D941N	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.D831N	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGCCTGTTCTGATAAAAATGG	0.532000													21	19					0	0	0.010504	0	0
HOXD12	3238	broad.mit.edu	37	2	176964993	176964993	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:176964993G>A	uc010zev.1	+	1	464	c.464G>A	c.(463-465)GGG>GAG	p.G155E	HOXD12_uc010zew.1_Missense_Mutation_p.G155E	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	155						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		CTGCTCCAGGGGGCTCCCTGC	0.652000													24	14					0	0	0.008361	0	0
PDE11A	50940	broad.mit.edu	37	2	178705018	178705018	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:178705018T>C	uc002ulq.2	-	6	1778	c.1460A>G	c.(1459-1461)AAC>AGC	p.N487S	PDE11A_uc002ulp.2_Missense_Mutation_p.N43S|PDE11A_uc002ulr.2_Missense_Mutation_p.N237S|PDE11A_uc002uls.1_Missense_Mutation_p.N129S|PDE11A_uc002ult.1_Missense_Mutation_p.N237S|PDE11A_uc002ulu.1_Missense_Mutation_p.N129S	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	487	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			ATCACTGATGTTCACTGGAAG	0.458000									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				36	38					0	0	0.006999	0	0
TTN	7273	broad.mit.edu	37	2	179436952	179436952	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:179436952G>A	uc010zfg.1	-	275	66427	c.66203C>T	c.(66202-66204)TCT>TTT	p.S22068F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S15763F|TTN_uc010zfi.1_Missense_Mutation_p.S15696F|TTN_uc010zfj.1_Missense_Mutation_p.S15571F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22995							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCTCCCAAGAGAGTGACAC	0.488000													23	19					0	0	0.007291	0	0
TTN	7273	broad.mit.edu	37	2	179439831	179439831	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:179439831C>T	uc010zfg.1	-	275	63548	c.63324G>A	c.(63322-63324)CAG>CAA	p.Q21108Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.Q14803Q|TTN_uc010zfi.1_Silent_p.Q14736Q|TTN_uc010zfj.1_Silent_p.Q14611Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22035							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTCTGTGTCTGTTTAAGAA	0.418000													11	9					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179440332	179440332	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:179440332C>T	uc010zfg.1	-	275	63047	c.62823G>A	c.(62821-62823)GTG>GTA	p.V20941V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V14636V|TTN_uc010zfi.1_Silent_p.V14569V|TTN_uc010zfj.1_Silent_p.V14444V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21868							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCTGCCATCACTCTGAAGA	0.443000													63	54					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179452036	179452036	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:179452036T>A	uc010zfg.1	-	256	56422	c.56198A>T	c.(56197-56199)TAT>TTT	p.Y18733F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.Y12428F|TTN_uc010zfi.1_Missense_Mutation_p.Y12361F|TTN_uc010zfj.1_Missense_Mutation_p.Y12236F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19660							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCACGATATAATGTGTCAC	0.473000													13	13					0	0	0.013537	0	0
TTN	7273	broad.mit.edu	37	2	179604643	179604643	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:179604643G>A	uc010zfh.1	-	46	13028	c.12804C>T	c.(12802-12804)ATC>ATT	p.I4268I	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.I4201I|TTN_uc010zfj.1_Silent_p.I4076I|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACATGCACATGATGTGTCTGG	0.453000													41	35					0	0	0.007835	0	0
TTN	7273	broad.mit.edu	37	2	179636157	179636157	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:179636157C>T	uc010zfg.1	-	34	8121	c.7897G>A	c.(7897-7899)GAA>AAA	p.E2633K	TTN_uc010zfh.1_Missense_Mutation_p.E2587K|TTN_uc010zfi.1_Missense_Mutation_p.E2587K|TTN_uc010zfj.1_Missense_Mutation_p.E2587K|TTN_uc002unb.2_Missense_Mutation_p.E2633K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2633							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTGGGATTCAGCTACGGTC	0.458000													49	44					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179641269	179641269	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:179641269G>A	uc010zfg.1	-	28	5546	c.5322C>T	c.(5320-5322)ATC>ATT	p.I1774I	TTN_uc010zfh.1_Silent_p.I1728I|TTN_uc010zfi.1_Silent_p.I1728I|TTN_uc010zfj.1_Silent_p.I1728I|TTN_uc002unb.2_Silent_p.I1774I|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1774							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCAAGTAATGATACCACTGT	0.423000													36	36					0	0	0.006230	0	0
Unknown	0	broad.mit.edu	37	2	190788357	190788357	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:190788357G>A	uc002uro.2	+	1	439	c.296G>A	c.(295-297)CGA>CAA	p.R99Q						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		GGTGTGAAACGATCTGCAGCG	0.483000													33	43					0	0	0.006999	0	0
CPS1	1373	broad.mit.edu	37	2	211542633	211542633	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:211542633C>T	uc002vee.3	+	38	4559	c.4427C>T	c.(4426-4428)GCT>GTT	p.A1476V	CPS1_uc010fur.2_Missense_Mutation_p.A1482V|CPS1_uc010fus.2_Missense_Mutation_p.A1025V	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1476					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		TTTGCTGAAGCTGTGCAGAAA	0.428000													157	136					0	0	0.014410	0	0
EPHA4	2043	broad.mit.edu	37	2	222307567	222307568	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:222307567_222307568CC>TT	uc002vmq.2	-	11	2097_2098	c.2055_2056GG>AA	c.(2053-2058)TTGGAA>TTAAAA	p.E686K	EPHA4_uc002vmr.2_Missense_Mutation_p.E686K|EPHA4_uc010zlm.1_Missense_Mutation_p.E627K|EPHA4_uc010zln.1_Missense_Mutation_p.E686K	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	686	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		ACCACGCCTTCCAAGTGAATGA	0.450000													42	48					0	0	0.004672	0	0
EPHA4	2043	broad.mit.edu	37	2	222307631	222307631	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:222307631C>T	uc002vmq.2	-	11	2034	c.1992G>A	c.(1990-1992)AGG>AGA	p.R664R	EPHA4_uc002vmr.2_Silent_p.R664R|EPHA4_uc010zlm.1_Silent_p.R605R|EPHA4_uc010zln.1_Silent_p.R664R	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	664	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GGAAGTCTCTCCTCTGTTTGT	0.498000													55	47					0	0	0.014410	0	0
INPP5D	3635	broad.mit.edu	37	2	234112893	234112893	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr2:234112893C>T	uc010zmo.1	+	25	3250	c.3097C>T	c.(3097-3099)CCC>TCC	p.P1033S	INPP5D_uc010zmp.1_Missense_Mutation_p.P1032S	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	1033	Pro-rich.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TAAGCCTGCTCCCAGGAAGGA	0.637000													21	15					0	0	0.014323	0	0
SNPH	9751	broad.mit.edu	37	20	1285629	1285629	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:1285629G>A	uc002wes.2	+	6	652	c.416G>A	c.(415-417)CGA>CAA	p.R139Q	SNPH_uc002wet.2_Missense_Mutation_p.R183Q	NM_014723	NP_055538	O15079	SNPH_HUMAN	syntaphilin	139	Potential.				synaptic vesicle docking involved in exocytosis	cell junction|integral to membrane|synapse|synaptosome	syntaxin-1 binding			ovary(2)	2						AAGGAGGCCCGAAAGGAGATC	0.557000													38	121					0	0	0.008740	0	0
SIRPB1	10326	broad.mit.edu	37	20	1600573	1600573	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:1600573G>A	uc010gai.2	-	1	117	c.18C>T	c.(16-18)TCC>TCT	p.S6S	SIRPB1_uc002wfk.3_Silent_p.S6S|SIRPB1_uc002wfl.3_Silent_p.S6S	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	6					cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GGTGGGGCCAGGAGGCTGGCA	0.562000													27	57					0	0	0.010818	0	0
PDYN	5173	broad.mit.edu	37	20	1961046	1961046	+	Missense_Mutation	SNP	G	A	A	rs75861277		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:1961046G>A	uc010gaj.2	-	3	930	c.688C>T	c.(688-690)CTC>TTC	p.L230F	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.L230F|PDYN_uc010zpt.1_Missense_Mutation_p.L75F	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	230					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGGCGCCGGAGAAAACCGCCA	0.532000													69	117					0	0	0.014410	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3677325	3677325	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:3677325C>T	uc002wja.2	-	10	2591	c.2591G>A	c.(2590-2592)CGA>CAA	p.R864Q	SIGLEC1_uc002wiz.3_Missense_Mutation_p.R864Q	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	864	Ig-like C2-type 8.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GCCCAGTTCTCGGACCTCTAA	0.592000													39	68					0	0	0.010771	0	0
PLCB1	23236	broad.mit.edu	37	20	8705358	8705358	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:8705358A>T	uc002wnb.2	+	16	1640	c.1637A>T	c.(1636-1638)TAT>TTT	p.Y546F	PLCB1_uc010zrb.1_Missense_Mutation_p.Y445F|PLCB1_uc002wna.2_Missense_Mutation_p.Y546F|PLCB1_uc002wnc.1_Missense_Mutation_p.Y445F|PLCB1_uc002wnd.1_Missense_Mutation_p.Y123F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	546	PI-PLC Y-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTGGTGAACTATATTCAGCCA	0.363000													34	65					0	0	0.013114	0	0
C20orf94	128710	broad.mit.edu	37	20	10582441	10582441	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:10582441C>T	uc010zre.1	+	6	559	c.379C>T	c.(379-381)CTT>TTT	p.L127F		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	127							protein binding				0						CAGTCGTGATCTTTTAGCAAG	0.323000													21	50					0	0	0.009535	0	0
C20orf26	26074	broad.mit.edu	37	20	20168620	20168620	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:20168620G>A	uc002wru.2	+	14	1508	c.1432G>A	c.(1432-1434)GAA>AAA	p.E478K	C20orf26_uc010zse.1_Missense_Mutation_p.E458K	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	478										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		TCCTGGTGTGGAAAATCTTGT	0.398000													50	77					0	0	0.014410	0	0
MYLK2	85366	broad.mit.edu	37	20	30412093	30412093	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:30412093G>A	uc002wwq.2	+	6	1012	c.910G>A	c.(910-912)GAG>AAG	p.E304K	MYLK2_uc002wws.2_5'Flank	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	304	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			TACCTGCATGGAGAAAGCCAC	0.582000													7	40					0	0	0.006214	0	0
MYLK2	85366	broad.mit.edu	37	20	30414655	30414655	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:30414655G>A	uc002wwq.2	+	8	1240	c.1138G>A	c.(1138-1140)GAG>AAG	p.E380K	MYLK2_uc002wws.2_5'UTR	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	380	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CCATCTGACCGAGGTGGACAC	0.572000													18	55					0	0	0.010504	0	0
EIF6	3692	broad.mit.edu	37	20	33872285	33872285	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:33872285C>T	uc002xbv.1	-	1	222	c.6G>A	c.(4-6)GCG>GCA	p.A2A	EIF6_uc002xbx.1_Silent_p.A2A|EIF6_uc002xbz.1_Silent_p.A2A|EIF6_uc002xby.1_RNA	NM_181468	NP_852133	P56537	IF6_HUMAN	eukaryotic translation initiation factor 6	2					mature ribosome assembly	cytoplasm|nucleolus	protein binding|ribosome binding|translation initiation factor activity			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(18;0.00252)			AAGCTCGGACCGCCATGAGGC	0.637000													47	125					0	0	0.014410	0	0
L3MBTL	26013	broad.mit.edu	37	20	42165071	42165071	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:42165071C>T	uc010zwh.1	+	19	2126	c.2080C>T	c.(2080-2082)CGA>TGA	p.R694*	L3MBTL_uc002xkl.2_Nonsense_Mutation_p.R626*|L3MBTL_uc002xkm.2_Nonsense_Mutation_p.R626*|L3MBTL_uc010ggl.2_Nonsense_Mutation_p.R631*|L3MBTL_uc002xkn.1_Nonsense_Mutation_p.R385*|L3MBTL_uc002xko.2_Nonsense_Mutation_p.R278*	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	626					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TCCGAAGTATCGAAAGATTCC	0.547000													44	103					0	0	0.014410	0	0
L3MBTL	26013	broad.mit.edu	37	20	42169713	42169713	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:42169713C>T	uc010zwh.1	+	22	2514	c.2468C>T	c.(2467-2469)TCT>TTT	p.S823F	L3MBTL_uc002xkl.2_Missense_Mutation_p.S755F|L3MBTL_uc002xkm.2_3'UTR|L3MBTL_uc010ggl.2_3'UTR|L3MBTL_uc002xkn.1_Intron|L3MBTL_uc002xko.2_3'UTR|L3MBTL_uc002xkp.2_Missense_Mutation_p.S143F|SGK2_uc002xkq.1_Intron	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	Error:Variant_position_missing_in_Q9Y468_after_alignment					chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CTCCTCTGCTCTCTACCCACT	0.438000													95	158					0	0	0.014410	0	0
SULF2	55959	broad.mit.edu	37	20	46319016	46319016	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:46319016G>A	uc002xto.2	-	5	921	c.591C>T	c.(589-591)ACC>ACT	p.T197T	SULF2_uc002xtr.2_Silent_p.T197T|SULF2_uc002xtq.2_Silent_p.T197T|SULF2_uc010ghv.1_Silent_p.T197T	NM_018837	NP_061325	Q8IWU5	SULF2_HUMAN	sulfatase 2 isoform a precursor	197					bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CGCTGTCATTGGTGATGAGGT	0.478000													11	36					0	0	0.001855	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47630414	47630414	+	Missense_Mutation	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:47630414T>C	uc002xtx.3	+	30	4248	c.4096T>C	c.(4096-4098)TTT>CTT	p.F1366L	ARFGEF2_uc010zyf.1_Missense_Mutation_p.F659L	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1366					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			TGGCCACACCTTTGAAAAGCA	0.458000													31	65					0	0	0.003271	0	0
FAM65C	140876	broad.mit.edu	37	20	49236604	49236604	+	Missense_Mutation	SNP	G	A	A	rs145939916		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:49236604G>A	uc002xvm.2	-	3	494	c.176C>T	c.(175-177)ACG>ATG	p.T59M	FAM65C_uc010zyt.1_Missense_Mutation_p.T63M|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Missense_Mutation_p.T59M	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	59										ovary(2)	2						CTTCCGCAGCGTGCCGTACAT	0.547000													24	100					0	0	0.007291	0	0
ADNP	23394	broad.mit.edu	37	20	49509288	49509288	+	Missense_Mutation	SNP	G	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:49509288G>T	uc002xvt.1	-	5	2308	c.1963C>A	c.(1963-1965)CCA>ACA	p.P655T	ADNP_uc002xvu.1_Missense_Mutation_p.P655T	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	655						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						TTCTCAACTGGATGAACCGTC	0.443000													42	114					9.58827e-17	9.77266e-17	0.014410	1	0
PFDN4	5203	broad.mit.edu	37	20	52835653	52835653	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:52835653C>T	uc002xwx.2	+	4	507	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_002623	NP_002614	Q9NQP4	PFD4_HUMAN	prefoldin subunit 4	123					'de novo' posttranslational protein folding	prefoldin complex	chaperone binding|unfolded protein binding				0	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		Colorectal(105;0.124)|STAD - Stomach adenocarcinoma(23;0.206)			ATGCAAAATTCGGGAGCAACA	0.294000													10	30					0	0	0.001855	0	0
C20orf151	140893	broad.mit.edu	37	20	60992363	60992363	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr20:60992363C>T	uc002ycw.1	-	4	274	c.117G>A	c.(115-117)AGG>AGA	p.R39R		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	39											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			GCTCCTCGATCCTCTGGGCGT	0.622000													4	5					0	0	0.000602	0	0
TPTE	7179	broad.mit.edu	37	21	10920136	10920136	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr21:10920136C>T	uc002yip.1	-	19	1486	c.1118G>A	c.(1117-1119)CGA>CAA	p.R373Q	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.R355Q|TPTE_uc002yir.1_Missense_Mutation_p.R335Q|TPTE_uc010gkv.1_Missense_Mutation_p.R235Q	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	373	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTATCTGTTCGCCTTTCTCC	0.383000													8	89					0	0	0.010729	0	0
DOPEY2	9980	broad.mit.edu	37	21	37620844	37620844	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr21:37620844C>T	uc002yvg.2	+	21	5055	c.4976C>T	c.(4975-4977)TCC>TTC	p.S1659F	DOPEY2_uc011aeb.1_Missense_Mutation_p.S1608F|DOPEY2_uc002yvh.2_Missense_Mutation_p.S510F	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1659					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						GGATCCTCTTCCGTTTACTTT	0.433000													10	21					0	0	0.013537	0	0
WRB	7485	broad.mit.edu	37	21	40762628	40762629	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr21:40762628_40762629CC>TT	uc002yxs.2	+	2	205_206	c.107_108CC>TT	c.(106-108)TCC>TTT	p.S36F	WRB_uc011aeo.1_RNA|WRB_uc011aep.1_Missense_Mutation_p.S36F|WRB_uc002yxt.3_Missense_Mutation_p.S2F|WRB_uc010goj.2_RNA	NM_004627	NP_004618	O00258	WRB_HUMAN	tryptophan rich basic protein isoform 1	36						integral to membrane|nucleolus					0		Prostate(19;1.2e-06)				TGCCAGATGTCCAGGGTGCTGC	0.450000													11	24					0	0	0.004672	0	0
PLAC4	191585	broad.mit.edu	37	21	42551311	42551311	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr21:42551311A>G	uc002yyz.2	-	1	5856	c.245T>C	c.(244-246)ATA>ACA	p.I82T	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	82											0		Prostate(19;2.29e-06)				gagtgagggtatccagggtga	0.149000													2	13					0	0	0.004672	0	0
PDE9A	5152	broad.mit.edu	37	21	44151974	44151974	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr21:44151974G>A	uc002zbm.2	+	5	420	c.357G>A	c.(355-357)AGG>AGA	p.R119R	PDE9A_uc002zbn.2_Intron|PDE9A_uc002zbo.2_Intron|PDE9A_uc002zbp.2_5'UTR|PDE9A_uc002zbq.2_Intron|PDE9A_uc002zbs.2_Intron|PDE9A_uc002zbr.2_Intron|PDE9A_uc002zbt.2_Intron|PDE9A_uc002zbu.2_Intron|PDE9A_uc002zbv.2_Intron|PDE9A_uc002zbw.2_Intron|PDE9A_uc002zbx.2_Intron|PDE9A_uc002zby.2_Intron|PDE9A_uc002zbz.2_Intron|PDE9A_uc002zca.2_Silent_p.R78R|PDE9A_uc002zcb.2_Silent_p.R93R|PDE9A_uc002zcc.2_Intron|PDE9A_uc002zcd.2_Intron|PDE9A_uc002zce.2_Silent_p.R52R|PDE9A_uc002zcf.2_5'UTR|PDE9A_uc002zcg.2_Intron|PDE9A_uc002zch.2_5'UTR	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	119					platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						AGCCCCGGAGGGAAGGAGCAT	0.622000													25	29					0	0	0.007291	0	0
CECR1	51816	broad.mit.edu	37	22	17663631	17663631	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:17663631C>T	uc002zmk.1	-	7	1314	c.1102G>A	c.(1102-1104)GAC>AAC	p.D368N	CECR1_uc010gqu.1_Missense_Mutation_p.D368N|CECR1_uc011agi.1_Missense_Mutation_p.D326N|CECR1_uc002zmj.1_Missense_Mutation_p.D127N	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	368					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				ATGTTCCTGTCTATGGAAGTA	0.532000													24	40					0	0	0.005443	0	0
SUSD2	56241	broad.mit.edu	37	22	24583635	24583635	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:24583635C>T	uc002zzn.1	+	12	2032	c.1988C>T	c.(1987-1989)CCC>CTC	p.P663L		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	663	VWFD.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCTTCGAGCCCCTCTTCCCC	0.582000													34	82					0	0	0.005524	0	0
MYO18B	84700	broad.mit.edu	37	22	26422717	26422717	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:26422717G>A	uc003abz.1	+	43	7027	c.6777G>A	c.(6775-6777)AGG>AGA	p.R2259R	MYO18B_uc003aca.1_Silent_p.R2140R|MYO18B_uc010guy.1_Silent_p.R2141R|MYO18B_uc010guz.1_Silent_p.R2139R|MYO18B_uc011aka.1_Silent_p.R1413R|MYO18B_uc011akb.1_Silent_p.R1772R|MYO18B_uc010gva.1_Silent_p.R242R|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2259						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGCTCCGGAGGAAGAGAGCCC	0.632000													3	11					0	0	0.004672	0	0
NAGA	4668	broad.mit.edu	37	22	42464507	42464507	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:42464507A>C	uc003bbx.2	-	3	225	c.88T>G	c.(88-90)TGG>GGG	p.W30G	NAGA_uc003bby.2_Missense_Mutation_p.W30G|NAGA_uc003bbw.3_Missense_Mutation_p.W30G	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	30					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						CAGGCCAGCCAGCCCATGGGT	0.582000													39	81					0	0	0.009718	0	0
GRAMD4	23151	broad.mit.edu	37	22	47059053	47059053	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:47059053C>T	uc003bhx.2	+	5	622	c.583C>T	c.(583-585)CCC>TCC	p.P195S	GRAMD4_uc010had.2_Missense_Mutation_p.P134S	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	195					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		GACAGAGGAACCCCTGAGCGC	0.662000													46	82					0	0	0.014410	0	0
ZBED4	9889	broad.mit.edu	37	22	50277355	50277355	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:50277355C>T	uc003bix.2	+	2	515	c.45C>T	c.(43-45)TTC>TTT	p.F15F		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	15						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		ACGGTGATTTCGTTTCTGATA	0.383000													15	31					0	0	0.003163	0	0
ALG12	79087	broad.mit.edu	37	22	50303663	50303663	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:50303663G>A	uc003biy.2	-	5	817	c.543C>T	c.(541-543)ATC>ATT	p.I181I		NM_024105	NP_077010	Q9BV10	ALG12_HUMAN	alpha-1,6-mannosyltransferase ALG12	181	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane					0		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		BRCA - Breast invasive adenocarcinoma(115;0.199)|LUAD - Lung adenocarcinoma(64;0.247)		CCCTGAACACGATGATGGCGA	0.657000													9	17					0	0	0.008291	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50682244	50682244	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr22:50682244G>A	uc003bkb.1	-	1	1157	c.645C>T	c.(643-645)TTC>TTT	p.F215F	TUBGCP6_uc010har.1_Silent_p.F215F|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hau.1_Silent_p.F215F	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	215					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CAAGGGCCCCGAAGAGCGAGA	0.627000													11	41					0	0	0.013537	0	0
CNTN6	27255	broad.mit.edu	37	3	1262427	1262427	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:1262427C>T	uc003boz.2	+	3	379	c.112C>T	c.(112-114)CCT>TCT	p.P38S	CNTN6_uc010hbo.2_Missense_Mutation_p.P33S|CNTN6_uc011asj.1_5'UTR|CNTN6_uc003bpa.2_Missense_Mutation_p.P38S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	38	Ig-like C2-type 1.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TGTCATTTTTCCTTTGGATTT	0.398000													34	63					0	0	0.005524	0	0
LMCD1	29995	broad.mit.edu	37	3	8590277	8590277	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:8590277C>T	uc003bqq.2	+	4	525	c.411C>T	c.(409-411)ATC>ATT	p.I137I	LMCD1_uc011atd.1_Silent_p.I64I|LMCD1_uc011ate.1_Silent_p.I25I|LMCD1_uc011atf.1_Silent_p.I64I	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1	137	PET.				positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		TGGAGCTCATCCCCAAGGAGA	0.557000													26	28					0	0	0.007291	0	0
BRPF1	7862	broad.mit.edu	37	3	9781495	9781495	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:9781495A>G	uc003bse.2	+	3	1811	c.1412A>G	c.(1411-1413)GAG>GGG	p.E471G	BRPF1_uc003bsf.2_Missense_Mutation_p.E471G|BRPF1_uc003bsg.2_Missense_Mutation_p.E471G|BRPF1_uc011ati.1_Missense_Mutation_p.E471G	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	471					histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					gaagatgaggaggaggatgag	0.478000													9	9					0	0	0.008291	0	0
SATB1	6304	broad.mit.edu	37	3	18393630	18393630	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:18393630G>A	uc003cbh.2	-	10	3368	c.1633C>T	c.(1633-1635)CTG>TTG	p.L545L	SATB1_uc003cbi.2_Silent_p.L545L|SATB1_uc003cbj.2_Silent_p.L545L	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	545	CUT 2.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						TTCTCCCACAGGGTTCTGTTT	0.502000													16	22					0	0	0.008871	0	0
EFHB	151651	broad.mit.edu	37	3	19926043	19926044	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:19926043_19926044GA>AC	uc003cbl.3	-	11	2193_2194	c.1997_1998TC>GT	c.(1996-1998)CTC>CGT	p.L666R	EFHB_uc003cbm.2_Missense_Mutation_p.L536R	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	666					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						CTGGCTTTATGAGGAGAGTTTG	0.366000													10	76					0	0	0.004672	0	0
XIRP1	165904	broad.mit.edu	37	3	39230094	39230094	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:39230094G>A	uc003cjk.1	-	2	1064	c.843C>T	c.(841-843)ATC>ATT	p.I281I	XIRP1_uc003cji.2_Silent_p.I281I|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	281							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GGTCCTGGTTGATGGCGTCCA	0.657000													13	30					0	0	0.001855	0	0
CYP8B1	1582	broad.mit.edu	37	3	42916897	42916897	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:42916897C>T	uc003cmh.2	-	1	737	c.412G>A	c.(412-414)GAT>AAT	p.D138N	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.D138N	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	138					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		TCATTAAGATCCTTCAAGCCA	0.517000													31	61					0	0	0.004289	0	0
HYAL3	8372	broad.mit.edu	37	3	50332838	50332838	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:50332838G>A	uc003czd.1	-	2	469	c.196C>T	c.(196-198)CAC>TAC	p.H66Y	HYAL3_uc003czc.1_Missense_Mutation_p.H66Y|HYAL3_uc003cze.1_Intron|HYAL3_uc003czf.1_Intron|HYAL3_uc003czg.1_Missense_Mutation_p.H66Y	NM_003549	NP_003540	O43820	HYAL3_HUMAN	hyaluronoglucosaminidase 3 precursor	66					carbohydrate metabolic process	extracellular region|lysosome	hyalurononglucosaminidase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		TTCTGACCGTGAAAATGCTGG	0.552000													43	123					0	0	0.014410	0	0
RAD54L2	23132	broad.mit.edu	37	3	51690122	51690122	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:51690122G>A	uc011bdt.1	+	19	3287	c.3162G>A	c.(3160-3162)ATG>ATA	p.M1054I	RAD54L2_uc003dbh.2_Missense_Mutation_p.M643I|RAD54L2_uc011bdu.1_Missense_Mutation_p.M748I|RAD54L2_uc003dbj.2_Missense_Mutation_p.M380I	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1054						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		ATCCATCCATGAACTTTCCCA	0.577000													34	79					0	0	0.003271	0	0
NEK4	6787	broad.mit.edu	37	3	52794947	52794947	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:52794947G>A	uc003dfq.3	-	6	1016	c.827C>T	c.(826-828)ACC>ATC	p.T276I	NEK4_uc011bej.1_Missense_Mutation_p.T187I|NEK4_uc003dfr.2_Missense_Mutation_p.T276I	NM_003157	NP_003148	P51957	NEK4_HUMAN	NIMA-related kinase 4	276					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.44e-05)|Kidney(197;0.000711)|KIRC - Kidney renal clear cell carcinoma(197;0.00086)|OV - Ovarian serous cystadenocarcinoma(275;0.0513)		ATTTTTGGAGGTTTTTCTTTA	0.343000													16	57					0	0	0.008871	0	0
DCP1A	55802	broad.mit.edu	37	3	53326850	53326850	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:53326850G>A	uc003dgs.3	-	7	725	c.632C>T	c.(631-633)CCA>CTA	p.P211L	DCP1A_uc003dgt.3_RNA	NM_018403	NP_060873	Q9NPI6	DCP1A_HUMAN	DCP1 decapping enzyme homolog A	211					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus	hydrolase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000164)|KIRC - Kidney renal clear cell carcinoma(197;0.00525)|Kidney(197;0.00579)|OV - Ovarian serous cystadenocarcinoma(275;0.0647)		GTGTCCAGATGGAGCAGACTG	0.423000													16	29					0	0	0.006122	0	0
CNTN3	5067	broad.mit.edu	37	3	74347312	74347312	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:74347312C>T	uc003dpm.1	-	17	2277	c.2197G>A	c.(2197-2199)GGT>AGT	p.G733S		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	733	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TACCCAAAACCTTCACCATTC	0.458000													15	40					0	0	0.006122	0	0
EPHA6	285220	broad.mit.edu	37	3	96962934	96962934	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:96962934C>T	uc010how.1	+	5	1452	c.1409C>T	c.(1408-1410)ACC>ATC	p.T470I	EPHA6_uc003drp.1_Missense_Mutation_p.T470I	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	375	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						GGCTTAGACACCAGCCAGTGT	0.468000													16	35					0	0	0.003163	0	0
MYH15	22989	broad.mit.edu	37	3	108172924	108172924	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:108172924G>A	uc003dxa.1	-	22	2445	c.2388C>T	c.(2386-2388)GTC>GTT	p.V796V		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	796	IQ.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						ACAATGTGAAGACTTTAGATA	0.428000													18	43					0	0	0.010504	0	0
MIR198	406975	broad.mit.edu	37	3	120114567	120114567	+	RNA	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:120114567G>A	hsa-mir-198|MI0000240	-			c.10G>A			FSTL1_uc003eds.2_3'UTR|FSTL1_uc011bjh.1_3'UTR																	0						TCTCCCCTCTGGACCAATGAT	0.303000													11	29					0	0	0.003163	0	0
CD86	942	broad.mit.edu	37	3	121828152	121828152	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:121828152G>A	uc003eet.2	+	5	860	c.744G>A	c.(742-744)TGG>TGA	p.W248*	CD86_uc011bjo.1_Nonsense_Mutation_p.W166*|CD86_uc011bjp.1_Nonsense_Mutation_p.W136*|CD86_uc003eeu.2_Nonsense_Mutation_p.W242*	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	248	Helical; (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	ACATTCCTTGGATTACAGCTG	0.413000													27	56					0	0	0.006320	0	0
CASR	846	broad.mit.edu	37	3	121980746	121980746	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:121980746C>T	uc003eev.3	+	4	1236	c.864C>T	c.(862-864)ATC>ATT	p.I288I	CASR_uc003eew.3_Silent_p.I288I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	288	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GGCGCAATATCACGGGCAAGA	0.572000													21	59					0	0	0.003330	0	0
CASR	846	broad.mit.edu	37	3	122003352	122003352	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:122003352T>G	uc003eev.3	+	7	2923	c.2551T>G	c.(2551-2553)TGC>GGC	p.C851G	CASR_uc003eew.3_Missense_Mutation_p.C861G	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	851	Helical; Name=7; (Potential).		C -> S.		anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTTGCTGGCGTGCATCTTCTT	0.542000													19	35					0	0	0.012319	0	0
PARP15	165631	broad.mit.edu	37	3	122345787	122345787	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:122345787C>T	uc003efm.2	+	9	1411	c.1345C>T	c.(1345-1347)CAA>TAA	p.Q449*	PARP15_uc003efn.2_Intron|PARP15_uc003efo.1_Nonsense_Mutation_p.Q196*|PARP15_uc003efp.1_Nonsense_Mutation_p.Q215*|PARP15_uc011bjt.1_Intron	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	427	Macro 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		TGTCATTTTTCAACCTGAGCT	0.368000													13	47					0	0	0.003163	0	0
IFT122	55764	broad.mit.edu	37	3	129231158	129231158	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:129231158G>A	uc003emm.2	+	24	3096	c.2890G>A	c.(2890-2892)GAT>AAT	p.D964N	IFT122_uc003eml.2_Missense_Mutation_p.D1015N|IFT122_uc003emn.2_Missense_Mutation_p.D905N|IFT122_uc003emo.2_Missense_Mutation_p.D854N|IFT122_uc003emp.2_Missense_Mutation_p.D814N|IFT122_uc010htc.2_Missense_Mutation_p.D957N|IFT122_uc011bky.1_Missense_Mutation_p.D755N|IFT122_uc003emq.2_Missense_Mutation_p.D804N|IFT122_uc003emr.2_Missense_Mutation_p.D717N|IFT122_uc011bla.1_Missense_Mutation_p.D738N|IFT122_uc010hte.2_Missense_Mutation_p.D290N|IFT122_uc003ems.2_Missense_Mutation_p.D346N|IFT122_uc011bkx.1_Missense_Mutation_p.D805N	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	964					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						ACTGCAGGAAGATCCGTTCAG	0.502000													56	143					0	0	0.014410	0	0
COL29A1	256076	broad.mit.edu	37	3	130159121	130159121	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:130159121A>G	uc010htj.1	+	35	6433	c.5939A>G	c.(5938-5940)AAG>AGG	p.K1980R	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.K19R	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	1980	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						GATGAGTTTAAGGCTGTGAAA	0.413000													12	29					0	0	0.013537	0	0
DBR1	51163	broad.mit.edu	37	3	137893608	137893608	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:137893608G>C	uc003erv.2	-	1	166	c.30C>G	c.(28-30)CAC>CAG	p.H10Q	DBR1_uc003eru.2_5'UTR	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	10						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						CCAGCTCGCCGTGGCAGCAGC	0.687000													4	14					0	0	0.000602	0	0
DGKG	1608	broad.mit.edu	37	3	186006599	186006599	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr3:186006599G>A	uc003fqa.2	-	6	981	c.444C>T	c.(442-444)GTC>GTT	p.V148V	DGKG_uc003fqb.2_Silent_p.V148V|DGKG_uc003fqc.2_Silent_p.V148V|DGKG_uc011brx.1_Silent_p.V148V	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	148					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	AAGACCGAGGGACGGGGGGTT	0.552000													108	224					0	0	0.014410	0	0
PDE6B	5158	broad.mit.edu	37	4	619608	619608	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:619608G>A	uc003gap.2	+	1	246	c.193G>A	c.(193-195)GAT>AAT	p.D65N	PDE6B_uc003gao.3_Missense_Mutation_p.D65N	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	65					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GCTGGTGCAGGATATGCAGGA	0.682000													14	26					0	0	0.002450	0	0
GPR78	27201	broad.mit.edu	37	4	8588947	8588947	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:8588947C>T	uc003glk.2	+	3	1368	c.949C>T	c.(949-951)CCG>TCG	p.P317S	CPZ_uc003gll.2_Intron	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	317	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(4)|ovary(2)	6						GAAGAGAACCCCGCGCCCAGC	0.672000													33	47					0	0	0.004289	0	0
KCNIP4	80333	broad.mit.edu	37	4	20736339	20736339	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:20736339G>A	uc003gqe.2	-	5	482	c.398C>T	c.(397-399)TCC>TTC	p.S133F	KCNIP4_uc003gqf.1_Missense_Mutation_p.S129F|KCNIP4_uc003gqg.1_Missense_Mutation_p.S88F|KCNIP4_uc003gqh.1_Missense_Mutation_p.S125F|KCNIP4_uc003gqi.1_Missense_Mutation_p.S88F|PACRGL_uc003gpu.2_Intron|PACRGL_uc003gpx.3_Intron|PACRGL_uc003gpw.2_Intron|KCNIP4_uc010iel.2_Missense_Mutation_p.S130F|KCNIP4_uc003gqd.3_Missense_Mutation_p.S113F	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	150	EF-hand 2.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				GAGCAAAATGGAAAGACCTTT	0.313000													30	73					0	0	0.003271	0	0
ARAP2	116984	broad.mit.edu	37	4	36162133	36162133	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:36162133C>T	uc003gsq.1	-	13	2728	c.2390G>A	c.(2389-2391)GGA>GAA	p.G797E	ARAP2_uc003gsr.1_Missense_Mutation_p.G797E	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	797	Arf-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCTGAATTTTCCTTCTTTATA	0.299000													4	9					0	0	0.001168	0	0
WDR19	57728	broad.mit.edu	37	4	39196180	39196180	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:39196180C>T	uc003gtv.2	+	5	461	c.307C>T	c.(307-309)CTT>TTT	p.L103F	WDR19_uc010ifl.1_Intron|WDR19_uc003gtu.1_Missense_Mutation_p.L103F|WDR19_uc011byi.1_Intron	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	103	WD 3.				cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						AATGTCTTTCCTTCTTTGGTC	0.333000													6	17					0	0	0.004482	0	0
KLB	152831	broad.mit.edu	37	4	39439491	39439491	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:39439491C>T	uc003gua.2	+	3	1578	c.1481C>T	c.(1480-1482)TCT>TTT	p.S494F	KLB_uc011byj.1_Missense_Mutation_p.S494F	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	494	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						AAACCTAAGTCTTCAGCACAC	0.443000													26	66					0	0	0.010818	0	0
N4BP2	55728	broad.mit.edu	37	4	40133427	40133427	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:40133427G>A	uc003guy.3	+	13	4872	c.4534G>A	c.(4534-4536)GAG>AAG	p.E1512K	N4BP2_uc010ifq.2_Missense_Mutation_p.E1432K|N4BP2_uc010ifr.2_Missense_Mutation_p.E1432K	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	1512						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						TTAGAAAAGGGAGACCCTTAT	0.333000													13	30					0	0	0.002450	0	0
UCHL1	7345	broad.mit.edu	37	4	41262709	41262709	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:41262709G>A	uc003gvo.2	+	4	316	c.220G>A	c.(220-222)GAA>AAA	p.E74K	UCHL1_uc003gvp.2_5'UTR|UCHL1_uc003gvq.2_5'UTR|UCHL1_uc003gvr.2_5'UTR|UCHL1_uc003gvs.2_5'UTR	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	74					cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						GAAGGGACAAGAAGTTAGTCC	0.418000													29	40					0	0	0.007291	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895503	42895503	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:42895503G>A	uc003gwt.2	+	1	220	c.220G>A	c.(220-222)GAG>AAG	p.E74K		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	74					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						TGATGAGAATGAGAATGACCA	0.463000													56	105					0	0	0.014410	0	0
GRXCR1	389207	broad.mit.edu	37	4	42965151	42965151	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:42965151G>A	uc003gwt.2	+	2	627	c.627G>A	c.(625-627)GGG>GGA	p.G209G		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	209	Glutaredoxin.				cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						ATTACCTTGGGGTAAGTAAGC	0.448000													121	244					0	0	0.014410	0	0
LNX1	84708	broad.mit.edu	37	4	54373514	54373514	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:54373514C>T	uc003hag.3	-	4	1001	c.745G>A	c.(745-747)GAA>AAA	p.E249K	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.E153K|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	249						cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TCAGAATTTTCCCTGCCCTGG	0.488000													24	83					0	0	0.006320	0	0
PDGFRA	5156	broad.mit.edu	37	4	55124954	55124954	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:55124954G>A	uc003han.3	+	2	350	c.19G>A	c.(19-21)GCG>ACG	p.A7T	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Missense_Mutation_p.A7T|PDGFRA_uc010igq.1_Missense_Mutation_p.A7T|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	7					cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity	p.A7E(1)		soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TTCCCATCCGGCGTTCCTGGT	0.473000			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			30	90					0	0	0.006230	0	0
KDR	3791	broad.mit.edu	37	4	55948738	55948738	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:55948738G>A	uc003has.2	-	28	4029	c.3727C>T	c.(3727-3729)CCG>TCG	p.P1243S	KDR_uc003hat.1_Missense_Mutation_p.P1243S	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1243	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity	p.P1243L(1)		lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TCTTCTAACGGGATATCTTCA	0.338000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			26	102					0	0	0.010818	0	0
CEP135	9662	broad.mit.edu	37	4	56890735	56890735	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:56890735C>T	uc003hbi.2	+	25	3623	c.3389C>T	c.(3388-3390)TCT>TTT	p.S1130F	CEP135_uc003hbj.2_Missense_Mutation_p.S836F	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	1130					centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					ACTCTGAGGTCTCCTTCACAT	0.328000													95	253					0	0	0.014410	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519864	69519864	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:69519864C>T	uc011cal.1	-	5	1242	c.1204G>A	c.(1204-1206)GAT>AAT	p.D402N		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	402					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						GCAATGTTATCATGTTGATCC	0.453000													55	179					0	0	0.014410	0	0
UGT2B15	7366	broad.mit.edu	37	4	69520822	69520822	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:69520822C>T	uc011cal.1	-	4	1122	c.1084G>A	c.(1084-1086)GAC>AAC	p.D362N		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	362					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						CCAAGAAGGTCATTCTGGGGT	0.353000													29	137					0	0	0.003755	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079978	70079978	+	Missense_Mutation	SNP	G	A	A	rs142415589	byFrequency	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:70079978G>A	uc003heh.2	-	1	472	c.463C>T	c.(463-465)CCC>TCC	p.P155S	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	155					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TCACCACAGGGAAAAACAGCA	0.398000													18	89					0	0	0.012319	0	0
UGT2B11	10720	broad.mit.edu	37	4	70080315	70080315	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:70080315G>A	uc003heh.2	-	1	135	c.126C>T	c.(124-126)ATC>ATT	p.I42I	uc003hei.1_RNA	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	42					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						GCTCTTTCAGGATTGTCTTCA	0.433000													58	163					0	0	0.014410	0	0
ENAM	10117	broad.mit.edu	37	4	71509972	71509972	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:71509972C>T	uc011caw.1	+	9	3110	c.2829C>T	c.(2827-2829)AAC>AAT	p.N943N		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	943					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AAAGCCAAAACCCTTTTAGAG	0.453000													19	64					0	0	0.008871	0	0
PRKG2	5593	broad.mit.edu	37	4	82096107	82096107	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:82096107C>A	uc003hmh.2	-	2	482	c.468G>T	c.(466-468)AAG>AAT	p.K156N	PRKG2_uc011cch.1_Missense_Mutation_p.K156N	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	156					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TAATGAGCTTCTTCTCACTGG	0.318000													31	68					9.65963e-10	9.78269e-10	0.003271	1	0
MEPE	56955	broad.mit.edu	37	4	88766882	88766882	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:88766882C>T	uc003hqy.2	+	4	901	c.862C>T	c.(862-864)CCA>TCA	p.P288S	MEPE_uc010ikn.2_Missense_Mutation_p.P175S	NM_020203	NP_064588	Q9NQ76	MEPE_HUMAN	matrix, extracellular phosphoglycoprotein with	288					skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			ovary(1)|lung(1)|skin(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000432)		GTTTGCAGGCCCAAGTGAAGC	0.448000													14	34					0	0	0.003163	0	0
DDIT4L	115265	broad.mit.edu	37	4	101109105	101109105	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:101109105C>T	uc003hvq.2	-	3	514	c.311G>A	c.(310-312)CGA>CAA	p.R104Q		NM_145244	NP_660287	Q96D03	DDT4L_HUMAN	DNA-damage-inducible transcript 4-like	104					negative regulation of signal transduction	cytoplasm				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;5.75e-09)		AACACAACCTCGCAAGCCGCA	0.458000													32	66					0	0	0.013726	0	0
FBXW7	55294	broad.mit.edu	37	4	153251889	153251889	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:153251889G>A	uc003ims.2	-	7	1266	c.1117C>T	c.(1117-1119)CCT>TCT	p.P373S	FBXW7_uc011cii.1_Missense_Mutation_p.P373S|FBXW7_uc003imt.2_Missense_Mutation_p.P373S|FBXW7_uc011cih.1_Missense_Mutation_p.P197S|FBXW7_uc003imq.2_Missense_Mutation_p.P293S|FBXW7_uc003imr.2_Missense_Mutation_p.P255S	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	373					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GTTACCTTAGGAGATTTGAGT	0.383000			Mis|N|D|F		colorectal|endometrial|T-ALL								60	103					0	0	0.014410	0	0
MARCH1	55016	broad.mit.edu	37	4	164534518	164534518	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:164534518G>A	uc003iqs.1	-	5	1167	c.190C>T	c.(190-192)CCC>TCC	p.P64S	MARCH1_uc003iqr.1_Missense_Mutation_p.P47S	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	64	Responsible for low stability (By similarity).				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGGCTCCTGGGAGCTGTCCCT	0.413000													38	73					0	0	0.014410	0	0
TLL1	7092	broad.mit.edu	37	4	166964467	166964467	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:166964467C>T	uc003irh.1	+	12	2067	c.1420C>T	c.(1420-1422)CAG>TAG	p.Q474*	TLL1_uc011cjn.1_Nonsense_Mutation_p.Q474*|TLL1_uc011cjo.1_Nonsense_Mutation_p.Q298*	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	474	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGGACAGATTCAGTCTCCCAA	0.413000													43	124					0	0	0.014410	0	0
DDX60	55601	broad.mit.edu	37	4	169145470	169145470	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:169145470C>T	uc003irp.2	-	35	5040	c.4748G>A	c.(4747-4749)AGA>AAA	p.R1583K	DDX60_uc003iro.2_Missense_Mutation_p.R54K	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1583							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AATTGCTACTCTTCCTTCCTT	0.373000													22	43					0	0	0.002780	0	0
TRIML2	205860	broad.mit.edu	37	4	189022404	189022404	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:189022404C>T	uc003izl.2	-	3	172	c.136G>A	c.(136-138)GAA>AAA	p.E46K	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Missense_Mutation_p.E96K|TRIML2_uc011clf.1_Missense_Mutation_p.E96K	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	46	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TGTTCCTCTTCCTTCCTCATA	0.318000													14	29					0	0	0.003163	0	0
DNAH5	1767	broad.mit.edu	37	5	13859595	13859595	+	Missense_Mutation	SNP	A	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:13859595A>C	uc003jfd.2	-	30	4958	c.4916T>G	c.(4915-4917)TTT>TGT	p.F1639C		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1639	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCCTCCCACAAAGACAGCTTC	0.443000									Kartagener_syndrome				34	62					0	0	0.006230	0	0
MARCH11	441061	broad.mit.edu	37	5	16067799	16067799	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:16067799G>A	uc003jfo.2	-	4	1203	c.990C>T	c.(988-990)ATC>ATT	p.I330I	MARCH11_uc010itw.1_Silent_p.I86I	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	330						cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						TGCTTTCTTCGATGTCTGTGG	0.473000													19	26					0	0	0.007413	0	0
PRDM9	56979	broad.mit.edu	37	5	23527083	23527083	+	Missense_Mutation	SNP	G	C	C	rs112192848		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:23527083G>C	uc003jgo.2	+	11	2068	c.1886G>C	c.(1885-1887)AGA>ACA	p.R629T		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	629	C2H2-type 5.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						CACCAGAGGAGACACACAGGG	0.612000										HNSCC(3;0.000094)			3	77					0	0	0.009096	0	0
CDH10	1008	broad.mit.edu	37	5	24488226	24488226	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:24488226C>T	uc003jgr.1	-	12	2245	c.1913G>A	c.(1912-1914)CGA>CAA	p.R638Q	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	638	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.R638Q(1)		ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CTCTTTTTTTCGCTGTCTTTT	0.398000										HNSCC(23;0.051)			16	32					0	0	0.006122	0	0
C9	735	broad.mit.edu	37	5	39306872	39306872	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:39306872G>A	uc003jlv.3	-	9	1352	c.1263C>T	c.(1261-1263)CTC>CTT	p.L421L		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	421	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			CATCATCTATGAGGTTTTCAC	0.373000													17	32					0	0	0.004990	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41005017	41005017	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:41005017C>T	uc003jmj.3	-	36	4360	c.3870G>A	c.(3868-3870)ATG>ATA	p.M1290I	HEATR7B2_uc003jmi.3_Missense_Mutation_p.M845I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1290	HEAT 14.						binding			ovary(6)|central_nervous_system(2)	8						TTGGTTCCTTCATGAGCTGAA	0.488000													11	18					0	0	0.001855	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41058252	41058252	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:41058252C>T	uc003jmj.3	-	7	1159	c.669G>A	c.(667-669)CGG>CGA	p.R223R	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	223							binding			ovary(6)|central_nervous_system(2)	8						GGAAGTCTTCCCGATGCAGCA	0.507000													5	27					0	0	0.001168	0	0
C6	729	broad.mit.edu	37	5	41160461	41160461	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:41160461G>A	uc003jmk.2	-	11	1677	c.1467C>T	c.(1465-1467)CCC>CCT	p.P489P	C6_uc003jml.1_Silent_p.P489P	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	489	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AGTCCACGATGGGGGCAAGCT	0.498000													28	49					0	0	0.010818	0	0
IL31RA	133396	broad.mit.edu	37	5	55202081	55202081	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:55202081C>T	uc003jql.2	+	9	1282	c.1217C>T	c.(1216-1218)TCT>TTT	p.S406F	IL31RA_uc003jqk.2_Missense_Mutation_p.S406F|IL31RA_uc011cqj.1_Missense_Mutation_p.S264F|IL31RA_uc003jqm.2_Missense_Mutation_p.S374F|IL31RA_uc003jqn.2_Missense_Mutation_p.S406F|IL31RA_uc010iwa.1_Missense_Mutation_p.S374F|IL31RA_uc003jqo.2_Missense_Mutation_p.S264F	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	374	Extracellular (Potential).|Fibronectin type-III 4.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				TCCTGGGAATCTGTGTCTCAG	0.512000													19	42					0	0	0.008871	0	0
GAPT	202309	broad.mit.edu	37	5	57790634	57790634	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:57790634G>A	uc003jro.1	+	3	665	c.271G>A	c.(271-273)GAC>AAC	p.D91N		NM_152687	NP_689900	Q8N292	GAPT_HUMAN	GRB2-binding adaptor protein, transmembrane	91					B cell activation	integral to membrane|plasma membrane					0						TAACACACACGACAACTATGA	0.428000													20	42					0	0	0.002780	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64756115	64756115	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:64756115C>T	uc003jtp.2	-	4	1327	c.513G>A	c.(511-513)AAG>AAA	p.K171K	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	171					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CTGTGGTATTCTTTAAAGGTT	0.323000													38	73					0	0	0.013114	0	0
AGGF1	55109	broad.mit.edu	37	5	76351386	76351386	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:76351386G>C	uc003ket.2	+	11	2041	c.1681G>C	c.(1681-1683)GAA>CAA	p.E561Q		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	561					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AAGAAGAAAAGAATTAAAGAA	0.294000													15	31					0	0	0.008871	0	0
BHMT	635	broad.mit.edu	37	5	78422036	78422036	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:78422036C>T	uc003kfu.3	+	6	898	c.793C>T	c.(793-795)CCA>TCA	p.P265S	BHMT_uc011cti.1_Missense_Mutation_p.P112S	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	265	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	CATCGATCTCCCAGAATTCCC	0.443000													10	41					0	0	0.013537	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79854997	79854997	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:79854997G>A	uc010jam.2	-	4	1192	c.842C>T	c.(841-843)ACC>ATC	p.T281I	ANKRD34B_uc003kgw.2_Missense_Mutation_p.T281I|ANKRD34B_uc010jan.2_Missense_Mutation_p.T281I	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	281						cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		CAGCCCATTGGTTTTATAGGA	0.463000													28	55					0	0	0.010818	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111540140	111540140	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:111540140G>A	uc003kpv.1	-	15	1582	c.1308C>T	c.(1306-1308)TTC>TTT	p.F436F	EPB41L4A_uc003kpp.1_Silent_p.F63F	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	436						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		GCGTGTAAGGGAACTTTGGCG	0.498000													49	117					0	0	0.014410	0	0
SRP19	6728	broad.mit.edu	37	5	112227939	112227939	+	Silent	SNP	T	C	C	rs712666	by1000genomes	TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:112227939T>C	uc011cvv.1	+	4	933	c.678T>C	c.(676-678)TCT>TCC	p.S226S	SRP19_uc011cvu.1_Silent_p.S211S|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_Intron|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:Variant_position_missing_in_P09132_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		TCCCAACATCTAGTCCTACCC	0.453000													3	123					0	0	0.004672	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129019833	129019833	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:129019833G>A	uc003kvb.1	+	18	2667	c.2667G>A	c.(2665-2667)CAG>CAA	p.Q889Q	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	889	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.Q889H(1)		ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TTCAGGATCAGAATTATGGTC	0.408000													30	86					0	0	0.005524	0	0
KDM3B	51780	broad.mit.edu	37	5	137756404	137756404	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:137756404C>T	uc003lcy.1	+	15	3925	c.3725C>T	c.(3724-3726)TCC>TTC	p.S1242F	KDM3B_uc010jew.1_Missense_Mutation_p.S898F|KDM3B_uc011cys.1_Missense_Mutation_p.S274F	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	1242					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GAAGCAGGGTCCCTGAGGTCG	0.463000													30	82					0	0	0.013726	0	0
PSD2	84249	broad.mit.edu	37	5	139193816	139193816	+	Silent	SNP	T	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:139193816T>C	uc003leu.1	+	4	1088	c.883T>C	c.(883-885)TTG>CTG	p.L295L		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	295	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGGAGGGGTTGGAGCCTGG	0.627000													25	95					0	0	0.005443	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237497	140237497	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:140237497C>T	uc003lhx.2	+	1	1864	c.1864C>T	c.(1864-1866)CGC>TGC	p.R622C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Missense_Mutation_p.R622C	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	622	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCCCGTTTCGCGTGGGGCT	0.632000													26	57					0	0	0.006320	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256303	140256303	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:140256303G>A	uc003lic.2	+	1	1373	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.E416K	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	416	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGGACCGCGAGAGCGTGTC	0.612000													110	279					0	0	0.014410	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581584	140581584	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:140581584C>T	uc003liy.2	+	1	2237	c.2237C>T	c.(2236-2238)TCC>TTC	p.S746F	PCDHB11_uc011daj.1_Missense_Mutation_p.S381F	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	746	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGACCCTTTCCCAGAGCTAC	0.577000													70	176					0	0	0.014410	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735521	140735521	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:140735521C>T	uc003ljq.1	+	1	754	c.754C>T	c.(754-756)CGT>TGT	p.R252C	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.R252C	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	252	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTAAGTGTTCGTGAGAACGT	0.507000													10	25					0	0	0.001855	0	0
SH3RF2	153769	broad.mit.edu	37	5	145439781	145439781	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:145439781C>T	uc003lnt.2	+	9	2146	c.1908C>T	c.(1906-1908)ATC>ATT	p.I636I	SH3RF2_uc011dbl.1_Silent_p.I636I|SH3RF2_uc011dbm.1_Silent_p.I121I|SH3RF2_uc003lnu.2_Silent_p.I127I|SH3RF2_uc011dbn.1_Silent_p.I127I|SH3RF2_uc011dbo.1_Silent_p.I93I	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	636							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAAATGGCATCGAAAAGGTAG	0.483000													35	55					0	0	0.014410	0	0
RBM27	54439	broad.mit.edu	37	5	145638042	145638042	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:145638042C>T	uc003lnz.3	+	11	1791	c.1625C>T	c.(1624-1626)CCA>CTA	p.P542L	RBM27_uc003lny.2_Missense_Mutation_p.P487L	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	542					mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACTGAACCACCAGTTCCTGTT	0.358000													24	63					0	0	0.012213	0	0
FAT2	2196	broad.mit.edu	37	5	150914116	150914116	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:150914116G>A	uc003lue.3	-	12	9294	c.9281C>T	c.(9280-9282)TCG>TTG	p.S3094L	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_5'Flank	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3094	Extracellular (Potential).|Cadherin 27.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCCTGGCACGATCGGCCACC	0.577000													39	69					0	0	0.014410	0	0
GABRG2	2566	broad.mit.edu	37	5	161495078	161495078	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:161495078G>A	uc003lyz.3	+	1	431	c.73G>A	c.(73-75)GTG>ATG	p.V25M	GABRG2_uc010jjc.2_Missense_Mutation_p.V25M|GABRG2_uc003lyy.3_Missense_Mutation_p.V25M|GABRG2_uc011dej.1_Translation_Start_Site	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	25					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GAAAATGACGGTGTGGATTCT	0.493000													17	51					0	0	0.002780	0	0
DOCK2	1794	broad.mit.edu	37	5	169135259	169135259	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:169135259G>A	uc003maf.2	+	15	1550	c.1470G>A	c.(1468-1470)ATG>ATA	p.M490I	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Nonsense_Mutation_p.W17*|DOCK2_uc010jjl.1_Intron	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	490	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACGCTGGATGGAAACAGTCA	0.279000													10	37					0	0	0.001855	0	0
C6orf146	222826	broad.mit.edu	37	6	4073562	4073562	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:4073562C>T	uc003mvx.2	-	6	589	c.249G>A	c.(247-249)GGG>GGA	p.G83G	C6orf146_uc010jnq.1_RNA|C6orf146_uc003mvy.2_Silent_p.G20G	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	83										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				ATTGAAAGATCCCTTGTTTAC	0.279000													29	70					0	0	0.003755	0	0
DSP	1832	broad.mit.edu	37	6	7578094	7578094	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:7578094C>T	uc003mxp.1	+	21	3239	c.2960C>T	c.(2959-2961)TCC>TTC	p.S987F	DSP_uc003mxq.1_Missense_Mutation_p.S987F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	987	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATGATTCAGTCCCCTTCTGGG	0.338000													51	82					0	0	0.014410	0	0
SYCP2L	221711	broad.mit.edu	37	6	10894137	10894137	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:10894137G>A	uc003mzo.2	+	3	412	c.116G>A	c.(115-117)GGA>GAA	p.G39E	SYCP2L_uc011dim.1_RNA	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	39						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			CATGATAAAGGATTTCAGAAA	0.299000													8	28					0	0	0.003080	0	0
SLC17A1	6568	broad.mit.edu	37	6	25826725	25826726	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:25826725_25826726GG>AA	uc003nfh.3	-	3	286_287	c.170_171CC>TT	c.(169-171)CCC>CTT	p.P57L	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Missense_Mutation_p.P55L|SLC17A1_uc010jqc.1_Missense_Mutation_p.P55L	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	57					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						TGGAGGTGTTGGGCAAACCATG	0.406000													59	134					0	0	0.004672	0	0
TRIM27	5987	broad.mit.edu	37	6	28887948	28887948	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:28887948A>T	uc003nlr.2	-	3	947	c.588T>A	c.(586-588)CAT>CAA	p.H196Q	TRIM27_uc003nls.2_Missense_Mutation_p.H196Q|TRIM27_uc003nlt.1_Missense_Mutation_p.H196Q	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	196					cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						GGCGATACTCATGCTCCTTTA	0.507000			T	RET	papillary thyroid								76	132					0	0	0.014410	0	0
OR2J2	26707	broad.mit.edu	37	6	29142309	29142309	+	Silent	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:29142309A>G	uc011dlm.1	+	1	999	c.897A>G	c.(895-897)AAA>AAG	p.K299K		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCATGTAAAAGGGGCAGCGA	0.438000													3	95					0	0	0.009096	0	0
SLC26A8	116369	broad.mit.edu	37	6	35967854	35967854	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:35967854C>T	uc003olm.2	-	4	471	c.360G>A	c.(358-360)CTG>CTA	p.L120L	SLC26A8_uc003oln.2_Silent_p.L120L|SLC26A8_uc003oll.2_Silent_p.L120L	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	120	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						GAGGAGGAATCAGTTGCCTTG	0.378000													30	70					0	0	0.013726	0	0
KCNK5	8645	broad.mit.edu	37	6	39162039	39162039	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:39162039G>A	uc003oon.2	-	4	904	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	180	Helical; (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CCATGAATACGAAGGGTGGGA	0.572000													30	75					0	0	0.003271	0	0
CAPN11	11131	broad.mit.edu	37	6	44144323	44144323	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:44144323G>A	uc003owt.1	+	10	1045	c.1007G>A	c.(1006-1008)AGG>AAG	p.R336K	CAPN11_uc011dvn.1_5'UTR	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	336	Calpain catalytic.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TCCAGTGCCAGGGAGTGGGAA	0.617000													16	68					0	0	0.004007	0	0
HCRTR2	3062	broad.mit.edu	37	6	55147031	55147031	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:55147031C>T	uc003pcl.2	+	7	1429	c.1114C>T	c.(1114-1116)CGA>TGA	p.R372*	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	372	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AGGAAAATTTCGAGAGGAATT	0.453000													12	14					0	0	0.013537	0	0
PRSS35	167681	broad.mit.edu	37	6	84234310	84234310	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:84234310G>A	uc003pjz.2	+	2	1313	c.1150G>A	c.(1150-1152)GAC>AAC	p.D384N	PRSS35_uc010kbm.2_Missense_Mutation_p.D384N	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	384	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GGTTCAGAAGGACTACAACGT	0.502000													10	31					0	0	0.010729	0	0
GRIK2	2898	broad.mit.edu	37	6	102250277	102250277	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:102250277G>A	uc003pqp.3	+	8	1416	c.1167G>A	c.(1165-1167)TTG>TTA	p.L389L	GRIK2_uc003pqn.2_Silent_p.L389L|GRIK2_uc003pqo.3_Silent_p.L389L|GRIK2_uc010kcw.2_Silent_p.L389L	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	389	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	ATTTTGATTTGGATGTGATCA	0.338000													24	60					0	0	0.008361	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762233	130762233	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:130762233G>A	uc003qca.2	+	3	1537	c.666G>A	c.(664-666)ATG>ATA	p.M222I	TMEM200A_uc010kfh.2_Missense_Mutation_p.M222I|TMEM200A_uc010kfi.2_Missense_Mutation_p.M222I|TMEM200A_uc003qcb.2_Missense_Mutation_p.M222I	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	222	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GTTTTCGAATGGACAGCTCCG	0.483000													12	32					0	0	0.010729	0	0
TXLNB	167838	broad.mit.edu	37	6	139564218	139564218	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:139564218C>T	uc011eds.1	-	10	1665	c.1500G>A	c.(1498-1500)GTG>GTA	p.V500V		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	500						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		CCAGATTTTTCACGGCGGTTT	0.488000													51	151					0	0	0.014410	0	0
SERAC1	84947	broad.mit.edu	37	6	158537289	158537289	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr6:158537289C>T	uc003qrc.2	-	14	1571	c.1429G>A	c.(1429-1431)GAA>AAA	p.E477K	SERAC1_uc003qrb.2_Missense_Mutation_p.E205K	NM_032861	NP_116250	Q96JX3	SRAC1_HUMAN	serine active site containing 1	477					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds				0		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		CTAAGAAGTTCGTTGCTTCTG	0.438000													24	49					0	0	0.006320	0	0
INTS1	26173	broad.mit.edu	37	7	1524809	1524809	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:1524809G>A	uc003skn.2	-	24	3287	c.3186C>T	c.(3184-3186)ACC>ACT	p.T1062T	INTS1_uc003skp.1_Silent_p.T409T	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	1062					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		AGGCGCTGATGGTCTGGGGAT	0.662000													32	32					0	0	0.008740	0	0
CARD11	84433	broad.mit.edu	37	7	2954992	2954992	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:2954992G>A	uc003smv.2	-	21	3122	c.2718C>T	c.(2716-2718)TCC>TCT	p.S906S		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	906					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ACTTGTTCTCGGACCTGCTGA	0.612000			Mis		DLBCL								3	84					0	0	0.004672	0	0
CARD11	84433	broad.mit.edu	37	7	2976769	2976769	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:2976769C>T	uc003smv.2	-	9	1647	c.1243G>A	c.(1243-1245)GAC>AAC	p.D415N		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	415	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CTCATCTCGTCGTTCTTCTCC	0.577000			Mis		DLBCL								26	78					0	0	0.010818	0	0
TMEM195	392636	broad.mit.edu	37	7	15425094	15425094	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:15425094C>T	uc003stb.1	-	10	1221	c.1051G>A	c.(1051-1053)GAA>AAA	p.E351K		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	351	Helical; (Potential).				ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						AAGGTCTCTTCATAAAATGCC	0.358000													28	74					0	0	0.006320	0	0
ABCB5	340273	broad.mit.edu	37	7	20778686	20778686	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:20778686C>T	uc003suw.3	+	15	2159	c.1613C>T	c.(1612-1614)TCG>TTG	p.S538L	ABCB5_uc010kuh.2_Missense_Mutation_p.S983L	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	538	Cytoplasmic (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						AAAGCCAAATCGGGGGCTGCG	0.423000													11	38					0	0	0.002450	0	0
NPC1L1	29881	broad.mit.edu	37	7	44560626	44560626	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:44560626G>A	uc003tlb.2	-	13	3101	c.3045C>T	c.(3043-3045)TTC>TTT	p.F1015F	NPC1L1_uc003tlc.2_Silent_p.F1015F|NPC1L1_uc011kbw.1_Silent_p.F969F|NPC1L1_uc003tla.2_Silent_p.F18F	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	1015	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GGTCGTTCAGGAACCAGGGAA	0.537000													74	279					0	0	0.014410	0	0
ZNF727	442319	broad.mit.edu	37	7	63538091	63538091	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:63538091C>T	uc011kdm.1	+	4	843	c.664C>T	c.(664-666)CAT>TAT	p.H222Y		NM_001159522	NP_001152994	A8MUV8	ZN727_HUMAN	zinc finger protein 727	222	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAATAGAGTTCATACTGGAAA	0.373000													5	16					0	0	0.001168	0	0
ZNF735	730291	broad.mit.edu	37	7	63674487	63674487	+	Splice_Site	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:63674487G>A	uc011kdn.1	+	3	262	c.262_splice	c.e3+1	p.V88_splice		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAACACCCAGGTAGGTGAGAG	0.463000													14	48					0	0	0.003163	0	0
FZD9	8326	broad.mit.edu	37	7	72849810	72849810	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:72849810C>T	uc003tyb.2	+	1	1702	c.1473C>T	c.(1471-1473)CCC>CCT	p.P491P		NM_003508	NP_003499	O00144	FZD9_HUMAN	frizzled 9 precursor	491	Extracellular (Potential).				B cell differentiation|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|neuroblast proliferation|vasculature development	cell surface|filopodium membrane|integral to membrane|perinuclear region of cytoplasm	G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				CCGCGGGGCCCGGAGGCCGGA	0.652000													37	35					0	0	0.009718	0	0
CACNA2D1	781	broad.mit.edu	37	7	81600036	81600036	+	Missense_Mutation	SNP	C	T	T	rs79127167		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:81600036C>T	uc003uhr.1	-	27	2415	c.2159G>A	c.(2158-2160)CGA>CAA	p.R720Q	CACNA2D1_uc011kgy.1_5'UTR	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	732	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CACAACAAATCGTGCTTTCAC	0.363000													37	153					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82578913	82578914	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:82578913_82578914AC>TT	uc003uhx.2	-	6	11279_11280	c.10990_10991GT>AA	c.(10990-10992)GTT>AAT	p.V3664N	PCLO_uc003uhv.2_Missense_Mutation_p.V3664N|PCLO_uc010lec.2_Missense_Mutation_p.V629N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3595					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGCTGGGGGAACTTTAGCCATA	0.475000													147	176					0	0	0.004672	0	0
PCLO	27445	broad.mit.edu	37	7	82580115	82580115	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:82580115C>T	uc003uhx.2	-	6	10078	c.9789G>A	c.(9787-9789)ATG>ATA	p.M3263I	PCLO_uc003uhv.2_Missense_Mutation_p.M3263I|PCLO_uc010lec.2_Missense_Mutation_p.M228I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3194	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTGTTGCTTCATAGACTGCA	0.473000													32	122					0	0	0.004289	0	0
GRM3	2913	broad.mit.edu	37	7	86468162	86468162	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:86468162C>T	uc003uid.2	+	4	2431	c.1332C>T	c.(1330-1332)TTC>TTT	p.F444F	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Silent_p.F316F|GRM3_uc010leh.2_Silent_p.F36F	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	444	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CAGCTCCATTCAACCCAAATA	0.358000													11	24					0	0	0.001855	0	0
ABCB1	5243	broad.mit.edu	37	7	87178784	87178784	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:87178784C>A	uc003uiz.1	-	15	2023	c.1605G>T	c.(1603-1605)CAG>CAT	p.Q535H	ABCB1_uc011khc.1_Missense_Mutation_p.Q471H	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	535	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	TCCTCTGCTTCTGCCCACCAC	0.542000													90	100					5.66435e-50	5.81053e-50	0.014410	1	0
SAMD9	54809	broad.mit.edu	37	7	92730924	92730924	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:92730924C>T	uc003umf.2	-	3	4743	c.4487G>A	c.(4486-4488)GGA>GAA	p.G1496E	SAMD9_uc003umg.2_Missense_Mutation_p.G1496E	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1496						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GTCAATTTTTCCTTTGTGAAC	0.378000													51	41					0	0	0.014410	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94918016	94918016	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:94918016G>A	uc003unp.2	+	15	3352	c.3070G>A	c.(3070-3072)GGA>AGA	p.G1024R	PPP1R9A_uc010lfj.2_Missense_Mutation_p.G1300R|PPP1R9A_uc011kif.1_Missense_Mutation_p.G1222R|PPP1R9A_uc003unq.2_Intron|PPP1R9A_uc011kig.1_Missense_Mutation_p.G1016R|PPP1R9A_uc003unr.2_Missense_Mutation_p.G313R	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1024	Interacts with TGN38 (By similarity).|SAM.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GCAGTTGGATGGAAATAAACT	0.373000										HNSCC(28;0.073)			23	114					0	0	0.002780	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95726867	95726867	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:95726867G>A	uc003uoc.3	+	17	2177	c.1900G>A	c.(1900-1902)GAT>AAT	p.D634N	DYNC1I1_uc003uod.3_Missense_Mutation_p.D617N|DYNC1I1_uc003uob.2_Missense_Mutation_p.D597N|DYNC1I1_uc003uoe.3_Missense_Mutation_p.D614N|DYNC1I1_uc010lfl.2_Missense_Mutation_p.D623N	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	634					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			TAACAGAGCTGATAGCGAGGA	0.512000													40	86					0	0	0.014410	0	0
CYP3A7	1551	broad.mit.edu	37	7	99313390	99313390	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:99313390G>A	uc003uru.2	-	7	766	c.661C>T	c.(661-663)CTC>TTC	p.L221F	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	221					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					CTTATTGAGAGAACGAATGGA	0.284000													31	149					0	0	0.013726	0	0
AZGP1	563	broad.mit.edu	37	7	99569492	99569492	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:99569492C>T	uc003ush.2	-	2	258	c.214G>A	c.(214-216)GGA>AGA	p.G72R		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	72					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					CTCCAGAGTCCCATGGGCTGA	0.512000													36	97					0	0	0.006999	0	0
Unknown	0	broad.mit.edu	37	7	100552576	100552576	+	RNA	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:100552576C>T	uc003uxk.1	+	1		c.1827C>T			uc003uxl.1_Missense_Mutation_p.P343S					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		CTCTACCATCCCGCTCACCAT	0.552000													38	280					0	0	0.014410	0	0
FBXL13	222235	broad.mit.edu	37	7	102524679	102524679	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:102524679C>T	uc003vaq.2	-	12	1516	c.1089G>A	c.(1087-1089)CTG>CTA	p.L363L	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Silent_p.L363L|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Silent_p.L363L	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	363	LRR 6.										0						AGTTGTCCGTCAGAGTTGGCA	0.373000													64	256					0	0	0.014410	0	0
SLC26A5	375611	broad.mit.edu	37	7	103038451	103038451	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:103038451C>T	uc003vbz.2	-	9	1135	c.899G>A	c.(898-900)GGA>GAA	p.G300E	SLC26A5_uc003vbt.1_Missense_Mutation_p.G300E|SLC26A5_uc003vbu.1_Missense_Mutation_p.G300E|SLC26A5_uc003vbv.1_Missense_Mutation_p.G300E|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.G300E|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	300	Helical; Name=7; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						AATGCCAGTTCCCATTACGAC	0.363000													81	82					0	0	0.014410	0	0
RELN	5649	broad.mit.edu	37	7	103629660	103629660	+	Silent	SNP	C	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:103629660C>G	uc003vca.2	-	1	304	c.144G>C	c.(142-144)GGG>GGC	p.G48G	RELN_uc010liz.2_Silent_p.G48G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	48	Reelin.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GCTCCCCATCCCCTTCCAGCT	0.627000													22	93					0	0	0.003954	0	0
KCND2	3751	broad.mit.edu	37	7	120385840	120385840	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:120385840G>A	uc003vjj.1	+	5	2439	c.1474G>A	c.(1474-1476)GAG>AAG	p.E492K		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	492	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					ACAGAATCACGAGTTTGTGGA	0.378000													34	28					0	0	0.006230	0	0
TAS2R16	50833	broad.mit.edu	37	7	122634835	122634835	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:122634835C>T	uc003vkl.1	-	1	920	c.854G>A	c.(853-855)AGG>AAG	p.R285K		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	285	Cytoplasmic (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						CTTTAGAATCCTTTTCAACGT	0.423000													38	167					0	0	0.014410	0	0
SPAM1	6677	broad.mit.edu	37	7	123593796	123593796	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:123593796G>A	uc003vld.2	+	4	574	c.172G>A	c.(172-174)GAA>AAA	p.E58K	SPAM1_uc003vle.2_Missense_Mutation_p.E58K|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.E58K|SPAM1_uc010lku.2_Missense_Mutation_p.E58K	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	58					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TGCCCCAAGTGAATTTTGTCT	0.448000													27	31					0	0	0.009535	0	0
KIAA1549	57670	broad.mit.edu	37	7	138603272	138603272	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:138603272G>A	uc011kql.1	-	2	1149	c.1100C>T	c.(1099-1101)GCA>GTA	p.A367V	KIAA1549_uc003vuk.3_Missense_Mutation_p.A317V|KIAA1549_uc011kqj.1_Missense_Mutation_p.A367V	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	367						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGACGCAAATGCAAGAGGAGT	0.498000			O	BRAF	pilocytic astrocytoma								5	203					0	0	0.001168	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				52	65					0	0	0.004672	0	0
MGAM	8972	broad.mit.edu	37	7	141800675	141800675	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:141800675G>A	uc003vwy.2	+	45	5314	c.5260G>A	c.(5260-5262)GAT>AAT	p.D1754N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1754	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTTCTGGGATGATGGGCAAAG	0.502000													8	36					0	0	0.004482	0	0
TPK1	27010	broad.mit.edu	37	7	144288542	144288542	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:144288542C>T	uc003weq.2	-	7	578	c.475G>A	c.(475-477)GAA>AAA	p.E159K	TPK1_uc003weo.2_Intron|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Intron|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	159					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	ATCAGCGATTCCTCTTGGATT	0.433000													43	154					0	0	0.014410	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171124	150171124	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:150171124C>T	uc003whj.2	+	4	1037	c.707C>T	c.(706-708)TCC>TTC	p.S236F		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	236						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CAGCTGCAGTCCACAGGACCC	0.532000													48	145					0	0	0.014410	0	0
NOS3	4846	broad.mit.edu	37	7	150692318	150692318	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:150692318C>T	uc003wif.2	+	3	482	c.186C>T	c.(184-186)CCC>CCT	p.P62P	NOS3_uc011kuy.1_5'UTR|NOS3_uc011kuz.1_Silent_p.P62P|NOS3_uc011kva.1_Silent_p.P62P|NOS3_uc011kvb.1_Silent_p.P62P	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	62					anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	TAACCCAGCCCCCAGAGGGGC	0.637000													14	52					0	0	0.004990	0	0
RP1L1	94137	broad.mit.edu	37	8	10466059	10466059	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:10466059C>T	uc003wtc.2	-	4	5778	c.5549G>A	c.(5548-5550)GGT>GAT	p.G1850D		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1850					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGCCTCTACACCTTCTGACTC	0.642000													6	268					0	0	0.008291	0	0
NAT2	10	broad.mit.edu	37	8	18258245	18258245	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:18258245C>T	uc003wyw.1	+	2	839	c.732C>T	c.(730-732)TTC>TTT	p.F244F		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	244					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		ATAGAAAATTCAATTATAAAG	0.388000									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				10	35					0	0	0.010729	0	0
ADAM2	2515	broad.mit.edu	37	8	39604026	39604026	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:39604026C>T	uc003xnj.2	-	19	2214	c.2139G>A	c.(2137-2139)AGG>AGA	p.R713R	ADAM2_uc003xnk.2_Silent_p.R694R|ADAM2_uc011lck.1_Silent_p.R650R|ADAM2_uc003xnl.2_Silent_p.R557R	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	713	Cytoplasmic (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TCCATTTTTTCCTTTGGAAAT	0.284000													32	62					0	0	0.008740	0	0
VDAC3	7419	broad.mit.edu	37	8	42259390	42259390	+	Silent	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:42259390A>G	uc011lct.1	+	7	551	c.408A>G	c.(406-408)CCA>CCG	p.P136P	VDAC3_uc010lxk.2_3'UTR|VDAC3_uc003xpc.2_Silent_p.P137P	NM_005662	NP_005653	Q9Y277	VDAC3_HUMAN	voltage-dependent anion channel 3 isoform b	136					adenine transport	mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			upper_aerodigestive_tract(1)	1	all_cancers(6;3.86e-23)|all_lung(13;6.47e-12)|Lung NSC(13;1.08e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;3.48e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00266)|Lung(22;0.00849)|LUSC - Lung squamous cell carcinoma(45;0.024)		Dihydroxyaluminium(DB01375)	TTTCTGGACCAACCATCTATG	0.423000													33	123					0	0	0.006999	0	0
CLVS1	157807	broad.mit.edu	37	8	62212522	62212522	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:62212522C>T	uc003xuh.2	+	2	460	c.136C>T	c.(136-138)CCC>TCC	p.P46S	CLVS1_uc003xug.2_Missense_Mutation_p.P46S|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Missense_Mutation_p.P46S	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	46					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						GAATGAAAACCCCGATGTTTT	0.448000													6	55					0	0	0.001168	0	0
SULF1	23213	broad.mit.edu	37	8	70533306	70533306	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:70533306C>T	uc010lza.1	+	14	2131	c.1414C>T	c.(1414-1416)CGA>TGA	p.R472*	SULF1_uc003xyd.2_Nonsense_Mutation_p.R472*|SULF1_uc003xye.2_Nonsense_Mutation_p.R472*|SULF1_uc003xyf.2_Nonsense_Mutation_p.R472*|SULF1_uc003xyg.2_Nonsense_Mutation_p.R472*|SULF1_uc003xyh.1_RNA	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	472					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			TGGCAAGCTTCGAATTCACAA	0.498000													33	48					0	0	0.010771	0	0
KCNB2	9312	broad.mit.edu	37	8	73848172	73848172	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:73848172C>T	uc003xzb.2	+	3	1170	c.582C>T	c.(580-582)ATC>ATT	p.I194I		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	194	Helical; Name=Segment S1; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TTTTCCAGATCCTGGCCATCG	0.463000													53	197					0	0	0.014410	0	0
JPH1	56704	broad.mit.edu	37	8	75227679	75227679	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:75227679G>A	uc003yae.2	-	2	596	c.556C>T	c.(556-558)CCG>TCG	p.P186S	JPH1_uc003yaf.2_Missense_Mutation_p.P186S|JPH1_uc003yag.1_Missense_Mutation_p.P50S	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	186	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			GTGCCGGCCGGGCTGTCGGCG	0.701000													6	13					0	0	0.001984	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618540	77618540	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:77618540T>A	uc003yav.2	+	2	2604	c.2217T>A	c.(2215-2217)TTT>TTA	p.F739L	ZFHX4_uc003yat.1_Missense_Mutation_p.F739L|ZFHX4_uc003yau.1_Missense_Mutation_p.F739L|ZFHX4_uc003yaw.1_Missense_Mutation_p.F739L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	739						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AGCAGGTGTTTGGCCACTCTG	0.532000										HNSCC(33;0.089)			6	26					0	0	0.001168	0	0
VPS13B	157680	broad.mit.edu	37	8	100287337	100287337	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:100287337C>T	uc003yiv.2	+	19	2790	c.2679C>T	c.(2677-2679)CCC>CCT	p.P893P	VPS13B_uc003yiw.2_Silent_p.P893P|VPS13B_uc003yiu.1_Silent_p.P893P|VPS13B_uc003yix.1_Silent_p.P364P	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	893					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AGTTGATTCCCTTGCTTCAGG	0.348000													4	18					0	0	0.009096	0	0
RIMS2	9699	broad.mit.edu	37	8	104709408	104709408	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:104709408A>G	uc003ylp.2	+	2	410	c.271A>G	c.(271-273)ACC>GCC	p.T91A		NM_001100117	NP_001093587	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	122	FYVE-type.|RabBD.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGATGCGCCAACCTGTGGTAT	0.448000										HNSCC(12;0.0054)			12	67					0	0	0.002450	0	0
DPYS	1807	broad.mit.edu	37	8	105441861	105441861	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:105441861C>T	uc003yly.3	-	5	991	c.862G>A	c.(862-864)GAA>AAA	p.E288K		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	288					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TGGTGCCATTCTTTATTCCAG	0.478000													29	41					0	0	0.010818	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110432855	110432855	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:110432855C>T	uc003yne.2	+	23	2737	c.2633C>T	c.(2632-2634)TCT>TTT	p.S878F		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	878	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AACCAATATTCTGTTACCATG	0.368000										HNSCC(38;0.096)			36	88					0	0	0.009718	0	0
CSMD3	114788	broad.mit.edu	37	8	114448956	114448956	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:114448956C>T	uc003ynu.2	-	1	287	c.128G>A	c.(127-129)GGA>GAA	p.G43E	CSMD3_uc011lhx.1_Missense_Mutation_p.G43E|CSMD3_uc010mcx.1_Missense_Mutation_p.G43E|CSMD3_uc003ynx.3_Missense_Mutation_p.G43E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	43	Helical; (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAACGTAAATCCACTTTTAAT	0.502000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			59	105					0	0	0.014410	0	0
SLC30A8	169026	broad.mit.edu	37	8	118170071	118170071	+	Missense_Mutation	SNP	C	G	G	rs141202988		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:118170071C>G	uc003yoh.2	+	4	790	c.560C>G	c.(559-561)GCG>GGG	p.A187G	SLC30A8_uc010mcz.2_Missense_Mutation_p.A138G|SLC30A8_uc011lia.1_Missense_Mutation_p.A138G|SLC30A8_uc003yog.2_Missense_Mutation_p.A138G	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	187	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity	p.A187V(1)		ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TGCGCAGTGGCGGCCAACATT	0.517000													20	46					0	0	0.014323	0	0
KLHL38	340359	broad.mit.edu	37	8	124663999	124663999	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:124663999C>T	uc003yqs.1	-	1	1192	c.1168G>A	c.(1168-1170)GGG>AGG	p.G390R		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	390	Kelch 3.										0						TCTCCAATCCCCCCGATGGAG	0.582000													13	32					0	0	0.013537	0	0
ZFAT	57623	broad.mit.edu	37	8	135669926	135669926	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:135669926G>A	uc003yup.2	-	2	249	c.74C>T	c.(73-75)TCG>TTG	p.S25L	ZFAT_uc003yun.2_Missense_Mutation_p.S13L|ZFAT_uc003yuo.2_Missense_Mutation_p.S13L|ZFAT_uc010meh.2_Missense_Mutation_p.S13L|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.S13L|ZFAT_uc010mej.2_Missense_Mutation_p.S25L|ZFAT_uc003yur.2_Missense_Mutation_p.S13L	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	25	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			GAGGAGTTCCGACTGATTTGG	0.408000													7	40					0	0	0.006214	0	0
FAM135B	51059	broad.mit.edu	37	8	139165019	139165019	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:139165019C>T	uc003yuy.2	-	13	1870	c.1699G>A	c.(1699-1701)GAA>AAA	p.E567K	FAM135B_uc003yux.2_Missense_Mutation_p.E468K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E129K|FAM135B_uc003yvb.2_Missense_Mutation_p.E129K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	567										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ACCAGGGGTTCAGCTCTGGAG	0.498000										HNSCC(54;0.14)			20	57					0	0	0.008871	0	0
LYNX1	66004	broad.mit.edu	37	8	143856634	143856634	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:143856634G>A	uc003yxc.1	-	4	572	c.302C>T	c.(301-303)ACC>ATC	p.T101I	LYNX1_uc003yxb.2_Intron|LYNX1_uc003yxd.1_Missense_Mutation_p.T101I|LYNX1_uc003yxe.1_Missense_Mutation_p.T101I	NM_177476	NP_803429	Q9BZG9	LYNX1_HUMAN	Ly-6 neurotoxin-like protein 1 isoform c	101	UPAR/Ly6.					anchored to membrane|plasma membrane					0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CAGGGCCAGGGTGGCCGGGGT	0.632000													9	23					0	0	0.006214	0	0
CYP11B2	1585	broad.mit.edu	37	8	143996580	143996580	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:143996580C>T	uc003yxk.1	-	3	480	c.477G>A	c.(475-477)CCG>CCA	p.P159P		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	159					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	CATCCACCATCGGGAGGAACC	0.632000									Familial_Hyperaldosteronism_type_I				4	24					0	0	0.001984	0	0
RHPN1	114822	broad.mit.edu	37	8	144462028	144462028	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr8:144462028G>A	uc003yyb.2	+	9	1108	c.975G>A	c.(973-975)CGG>CGA	p.R325R		NM_052924	NP_443156	Q8TCX5	RHPN1_HUMAN	rhophilin 1	325	BRO1.				signal transduction	intracellular				large_intestine(1)	1	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.156)			TAGTGCACCGGACCATGGCCC	0.667000													12	13					0	0	0.002450	0	0
TAF1L	138474	broad.mit.edu	37	9	32632446	32632446	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:32632446C>T	uc003zrg.1	-	1	3222	c.3132G>A	c.(3130-3132)GTG>GTA	p.V1044V	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1044					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CCACATCAATCACTTCCCAGC	0.483000													72	102					0	0	0.014410	0	0
TAF1L	138474	broad.mit.edu	37	9	32633513	32633513	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:32633513C>T	uc003zrg.1	-	1	2155	c.2065G>A	c.(2065-2067)GAT>AAT	p.D689N	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	689					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CCTGTGAGATCCTGAGGTGTG	0.433000													34	45					0	0	0.006999	0	0
TLN1	7094	broad.mit.edu	37	9	35719779	35719779	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:35719779G>A	uc003zxt.2	-	14	1890	c.1536C>T	c.(1534-1536)ACC>ACT	p.T512T		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	512					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			AGTCATCCAGGGTGGCCTGGG	0.572000													3	6					0	0	0.009096	0	0
TLE4	7091	broad.mit.edu	37	9	82267548	82267548	+	Missense_Mutation	SNP	T	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:82267548T>G	uc004ald.2	+	7	1259	c.410T>G	c.(409-411)CTC>CGC	p.L137R	TLE4_uc004alc.2_Missense_Mutation_p.L144R|TLE4_uc010mpr.2_Missense_Mutation_p.L23R|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.L112R|TLE4_uc010mps.2_Missense_Mutation_p.L137R|TLE4_uc004alf.2_Missense_Mutation_p.L83R	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						GGACATGGTCTCCCCGTACCT	0.552000													51	133					0	0	0.014410	0	0
C9orf79	286234	broad.mit.edu	37	9	90502202	90502202	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:90502202C>T	uc004app.3	+	4	2835	c.2800C>T	c.(2800-2802)CCG>TCG	p.P934S		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	934						integral to membrane				ovary(3)	3						CCAGAGGCCCCCGAGAGGGTC	0.622000													19	66					0	0	0.008871	0	0
ACTL7B	10880	broad.mit.edu	37	9	111618064	111618064	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:111618064G>A	uc004bdi.2	-	1	212	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	49						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						TGACCGCCTTGATCTTGTGCA	0.642000													57	106					0	0	0.014410	0	0
LPAR1	1902	broad.mit.edu	37	9	113703746	113703746	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:113703746G>A	uc004bfa.2	-	4	1003	c.748C>T	c.(748-750)CGG>TGG	p.R250W	LPAR1_uc011lwm.1_Missense_Mutation_p.R251W|LPAR1_uc004bfb.2_Missense_Mutation_p.R250W|LPAR1_uc004bfc.2_Missense_Mutation_p.R250W|LPAR1_uc011lwn.1_Missense_Mutation_p.R232W|LPAR1_uc011lwo.1_Missense_Mutation_p.R251W|LPAR1_uc010mub.2_Missense_Mutation_p.R250W	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	250	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						ATGGTATCCCGATTCCGCCGG	0.443000													33	55					0	0	0.006999	0	0
COL27A1	85301	broad.mit.edu	37	9	117027750	117027750	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:117027750G>A	uc011lxl.1	+	32	3388	c.3388G>A	c.(3388-3390)GAA>AAA	p.E1130K	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1130	Pro-rich.|Collagen-like 9.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CCTCCCAGGAGAACCGGTAAG	0.622000													13	34					0	0	0.008871	0	0
PAPPA	5069	broad.mit.edu	37	9	118950233	118950233	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:118950233C>T	uc004bjn.2	+	2	1597	c.1216C>T	c.(1216-1218)CGC>TGC	p.R406C	PAPPA_uc011lxp.1_Missense_Mutation_p.R199C|PAPPA_uc011lxq.1_Missense_Mutation_p.R199C	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	406	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CTCCTCCCTTCGCCGCCGCCT	0.612000													21	74					0	0	0.003954	0	0
DBC1	1620	broad.mit.edu	37	9	121929509	121929509	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:121929509C>T	uc004bkc.2	-	8	2595	c.2139G>A	c.(2137-2139)GGG>GGA	p.G713G		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	713					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTGGGGTTTCCCCGGGGCCA	0.552000													26	82					0	0	0.008361	0	0
MAPKAP1	79109	broad.mit.edu	37	9	128305419	128305419	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:128305419G>A	uc004bpv.2	-	7	1210	c.877C>T	c.(877-879)CAG>TAG	p.Q293*	MAPKAP1_uc011lzt.1_Nonsense_Mutation_p.Q96*|MAPKAP1_uc010mwz.2_RNA|MAPKAP1_uc011lzu.1_Nonsense_Mutation_p.Q96*|MAPKAP1_uc011lzv.1_Nonsense_Mutation_p.Q37*|MAPKAP1_uc004bpw.2_Nonsense_Mutation_p.Q101*|MAPKAP1_uc004bpx.2_Nonsense_Mutation_p.Q101*|MAPKAP1_uc004bpy.2_Nonsense_Mutation_p.Q293*|MAPKAP1_uc004bpz.2_Nonsense_Mutation_p.Q293*|MAPKAP1_uc010mxa.2_RNA|MAPKAP1_uc010mxb.1_Nonsense_Mutation_p.Q96*|MAPKAP1_uc004bqa.2_Nonsense_Mutation_p.Q293*	NM_001006617	NP_001006618	Q9BPZ7	SIN1_HUMAN	mitogen-activated protein kinase associated	293					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|response to stress|T cell costimulation	cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	Ras GTPase binding			ovary(2)|lung(2)	4						TTGTCCACCTGAATAAGGGAG	0.393000													42	95					0	0	0.014410	0	0
QRFP	347148	broad.mit.edu	37	9	133769099	133769099	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:133769099G>A	uc011mcb.1	-	1	127	c.127C>T	c.(127-129)CTG>TTG	p.L43L		NM_198180	NP_937823	P83859	OX26_HUMAN	RF(Arg-Phe)amide family 26 amino acid peptide	43					locomotory behavior|neuropeptide signaling pathway|positive regulation of blood pressure|regulation of feeding behavior	extracellular region	neuropeptide hormone activity|orexigenic neuropeptide QRFP receptor binding				0	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.17e-05)|Epithelial(140;0.000267)		CCCATGGCCAGGTCGGCCCAG	0.667000													12	15					0	0	0.013537	0	0
C9orf171	389799	broad.mit.edu	37	9	135374949	135374949	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:135374949C>T	uc004cbn.2	+	4	642	c.594C>T	c.(592-594)CCC>CCT	p.P198P	C9orf171_uc004cbo.2_Silent_p.P162P	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	198										ovary(4)|large_intestine(1)	5						AAGAGCCGCCCCCTCTCCCTC	0.602000													31	100					0	0	0.003755	0	0
SEC16A	9919	broad.mit.edu	37	9	139370631	139370631	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:139370631G>A	uc004chx.2	-	3	1746	c.1437C>T	c.(1435-1437)GAC>GAT	p.D479D	SEC16A_uc004chv.3_Silent_p.D106D|SEC16A_uc004chw.2_Silent_p.D479D|SEC16A_uc010nbn.2_Silent_p.D479D|SEC16A_uc010nbo.1_Silent_p.D479D	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	301					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGGAGGAAGGGTCCAAATTGA	0.572000													18	50					0	0	0.006122	0	0
MXRA5	25878	broad.mit.edu	37	X	3235706	3235706	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:3235706C>T	uc004crg.3	-	6	6173	c.6016G>A	c.(6016-6018)GAA>AAA	p.E2006K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2006	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTCCGGTTTTCGTGCAGGGTG	0.622000													12	32					0	0	0.013537	0	0
SHROOM2	357	broad.mit.edu	37	X	9862847	9862847	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:9862847C>T	uc004csu.1	+	4	989	c.899C>T	c.(898-900)CCA>CTA	p.P300L		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	300					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				AATTTTGGGCCAGTCTGGTAT	0.622000													12	39					0	0	0.002450	0	0
FRMPD4	9758	broad.mit.edu	37	X	12627853	12627853	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:12627853G>A	uc004cuz.1	+	3	678	c.172G>A	c.(172-174)GCA>ACA	p.A58T	FRMPD4_uc011mij.1_Missense_Mutation_p.A50T	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	58	WW.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CATGACACAGGCAATCCCTTT	0.478000													14	83					0	0	0.003163	0	0
CA5B	11238	broad.mit.edu	37	X	15790710	15790710	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:15790710C>T	uc004cxe.2	+	4	549	c.432C>T	c.(430-432)ACC>ACT	p.T144T		NM_007220	NP_009151	Q9Y2D0	CAH5B_HUMAN	carbonic anhydrase VB, mitochondrial precursor	144					one-carbon metabolic process	mitochondrion	carbonate dehydratase activity|zinc ion binding				0	Hepatocellular(33;0.183)					CTGAGCACACCGTGGACAGCA	0.488000													40	226					0	0	0.014410	0	0
CNKSR2	22866	broad.mit.edu	37	X	21550139	21550139	+	Missense_Mutation	SNP	A	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:21550139A>T	uc004czx.1	+	11	1293	c.1257A>T	c.(1255-1257)AAA>AAT	p.K419N	CNKSR2_uc004czw.2_Missense_Mutation_p.K419N|CNKSR2_uc011mjn.1_Missense_Mutation_p.K370N|CNKSR2_uc011mjo.1_Missense_Mutation_p.K419N|CNKSR2_uc004czy.2_Missense_Mutation_p.K41N	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	419	DUF1170.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AATATGAAAAAGGAAGATCAA	0.333000													8	74					0	0	0.008291	0	0
MAGEB2	4113	broad.mit.edu	37	X	30237460	30237460	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:30237460G>A	uc004dbz.2	+	2	866	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	255	MAGE.						protein binding			ovary(1)	1						TCTGGTGCAGGAAAAATATCT	0.498000													7	27					0	0	0.003080	0	0
TAB3	257397	broad.mit.edu	37	X	30870900	30870900	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:30870900G>A	uc004dcj.2	-	7	2368	c.1705C>T	c.(1705-1707)CCT>TCT	p.P569S	TAB3_uc004dck.2_Missense_Mutation_p.P569S|TAB3_uc010ngl.2_Missense_Mutation_p.P569S	NM_152787	NP_690000	Q8N5C8	TAB3_HUMAN	mitogen-activated protein kinase kinase kinase 7	569					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein binding|zinc ion binding			ovary(1)	1						CTTACCGTAGGGATCGCAGTG	0.473000													11	65					0	0	0.004007	0	0
DMD	1756	broad.mit.edu	37	X	31747853	31747853	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:31747853C>T	uc004dda.1	-	52	7799	c.7555G>A	c.(7555-7557)GAT>AAT	p.D2519N	DMD_uc004dcr.1_Missense_Mutation_p.D59N|DMD_uc004dcs.1_Missense_Mutation_p.D59N|DMD_uc004dct.1_Missense_Mutation_p.D59N|DMD_uc004dcu.1_Missense_Mutation_p.D59N|DMD_uc004dcv.1_Missense_Mutation_p.D59N|DMD_uc004dcw.2_Missense_Mutation_p.D1175N|DMD_uc004dcx.2_Missense_Mutation_p.D1178N|DMD_uc004dcz.2_Missense_Mutation_p.D2396N|DMD_uc004dcy.1_Missense_Mutation_p.D2515N|DMD_uc004ddb.1_Missense_Mutation_p.D2511N|DMD_uc004ddd.1_Missense_Mutation_p.D59N	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2519	Spectrin 17.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGTTCCAAATCCTGCATTGTT	0.403000													22	85					0	0	0.007291	0	0
DMD	1756	broad.mit.edu	37	X	32429938	32429938	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:32429938G>A	uc004dda.1	-	30	4408	c.4164C>T	c.(4162-4164)TTC>TTT	p.F1388F	DMD_uc004dcw.2_Silent_p.F44F|DMD_uc004dcx.2_Silent_p.F47F|DMD_uc004dcz.2_Silent_p.F1265F|DMD_uc004dcy.1_Silent_p.F1384F|DMD_uc004ddb.1_Silent_p.F1380F|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1388					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GCTTGTCAATGAATGTGAGGG	0.473000													33	42					0	0	0.003271	0	0
USP9X	8239	broad.mit.edu	37	X	41075851	41075851	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:41075851C>T	uc004dfb.2	+	35	6664	c.6031C>T	c.(6031-6033)CAG>TAG	p.Q2011*	USP9X_uc004dfc.2_Nonsense_Mutation_p.Q2011*	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	2011					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						GGAGTATTTTCAGTTTATGAA	0.363000													22	34					0	0	0.003330	0	0
EFHC2	80258	broad.mit.edu	37	X	44037711	44037711	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:44037711C>T	uc004dgb.3	-	13	1941	c.1851G>A	c.(1849-1851)ATG>ATA	p.M617I		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	617							calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						TTAAGAAATCCATATCTGAAC	0.398000													10	12					0	0	0.008291	0	0
ZNF41	7592	broad.mit.edu	37	X	47307452	47307452	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:47307452G>A	uc004dhs.3	-	4	1910	c.1843C>T	c.(1843-1845)CAT>TAT	p.H615Y	ZNF41_uc004dhu.3_Missense_Mutation_p.H607Y|ZNF41_uc004dht.3_Missense_Mutation_p.H487Y|ZNF41_uc004dhv.3_Missense_Mutation_p.H583Y|ZNF41_uc004dhw.3_Missense_Mutation_p.H575Y|ZNF41_uc004dhy.3_Missense_Mutation_p.H573Y|ZNF41_uc004dhx.3_Missense_Mutation_p.H573Y|ZNF41_uc011mlm.1_Missense_Mutation_p.H487Y	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	615	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				TCTCCAATATGAGATTTCTGA	0.438000													9	38					0	0	0.008291	0	0
ARAF	369	broad.mit.edu	37	X	47424737	47424737	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:47424737C>T	uc011mlq.1	+	6	678	c.545C>T	c.(544-546)CCC>CTC	p.P182L	ARAF_uc011mln.1_RNA|ARAF_uc011mlo.1_Missense_Mutation_p.P48L|ARAF_uc011mlp.1_Missense_Mutation_p.P182L|ARAF_uc004dic.1_5'UTR	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	182					intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	TTGCTAACCCCCCAGGGTCCC	0.532000													28	40					0	0	0.010818	0	0
ZNF182	7569	broad.mit.edu	37	X	47836055	47836055	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:47836055C>T	uc004dir.2	-	7	1777	c.1431G>A	c.(1429-1431)CAG>CAA	p.Q477Q	ZNF182_uc004dis.2_Silent_p.Q458Q|ZNF182_uc004dit.2_Silent_p.Q477Q|ZNF182_uc011mlu.1_Silent_p.Q457Q	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	477	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TATGACCTCTCTGATGCAGCA	0.393000													11	55					0	0	0.003163	0	0
SSX6	280657	broad.mit.edu	37	X	47970732	47970732	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:47970732G>A	uc004dix.1	+	4	395	c.273G>A	c.(271-273)GGG>GGA	p.G91G	SSX6_uc011mlv.1_Silent_p.G91G	NM_173357	NP_775493			SubName: Full=Putative uncharacterized protein SSX1;												0						GTAACCGTGGGAATGAGGGTG	0.483000													14	19					0	0	0.002450	0	0
TBC1D25	4943	broad.mit.edu	37	X	48418190	48418190	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:48418190C>T	uc004dka.1	+	6	1005	c.894C>T	c.(892-894)GCC>GCT	p.A298A	TBC1D25_uc011mly.1_Silent_p.A240A|TBC1D25_uc004dkb.1_Silent_p.A44A|TBC1D25_uc011mlz.1_Silent_p.A44A|TBC1D25_uc011mma.1_Silent_p.A44A|TBC1D25_uc004dkc.1_Silent_p.A44A|TBC1D25_uc011mmb.1_Silent_p.A302A|TBC1D25_uc011mmc.1_Silent_p.A44A|TBC1D25_uc011mmd.1_Silent_p.A44A	NM_002536	NP_002527	Q3MII6	TBC25_HUMAN	TBC1 domain family, member 25	298	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)	1						CTGACCGGGCCCACCCCTACT	0.632000													9	40					0	0	0.006214	0	0
KCND1	3750	broad.mit.edu	37	X	48822539	48822539	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:48822539G>A	uc004dlx.1	-	5	3214	c.1641C>T	c.(1639-1641)TCC>TCT	p.S547S	KCND1_uc004dlw.1_Silent_p.S170S	NM_004979	NP_004970	Q9NSA2	KCND1_HUMAN	potassium voltage-gated channel, Shal-related	547	Cytoplasmic (Potential).					voltage-gated potassium channel complex	metal ion binding|voltage-gated potassium channel activity			ovary(2)|lung(1)	3						CTGAGGCAGTGGAGTTGGCAA	0.652000													18	14					0	0	0.006122	0	0
CACNA1F	778	broad.mit.edu	37	X	49066156	49066156	+	Missense_Mutation	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:49066156A>G	uc004dnb.2	-	41	4849	c.4787T>C	c.(4786-4788)TTC>TCC	p.F1596S	CACNA1F_uc010nip.2_Missense_Mutation_p.F1585S	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1596	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CCTCCGCCGGAATTTGCGGAA	0.582000													9	21					0	0	0.004482	0	0
SHROOM4	57477	broad.mit.edu	37	X	50377786	50377786	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:50377786C>T	uc004dpe.2	-	4	1313	c.1287G>A	c.(1285-1287)AGG>AGA	p.R429R	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Silent_p.R313R	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	429					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					CTTTGCTGCCCCTGGTATCAA	0.592000													8	30					0	0	0.006214	0	0
FAM120C	54954	broad.mit.edu	37	X	54159266	54159266	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:54159266C>T	uc004dsz.3	-	9	2004	c.1921G>A	c.(1921-1923)GAT>AAT	p.D641N	FAM120C_uc011moh.1_Missense_Mutation_p.D641N	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	641										ovary(1)|central_nervous_system(1)	2						TTACACTCATCCTCAATACAT	0.428000													6	26					0	0	0.008291	0	0
WNK3	65267	broad.mit.edu	37	X	54360030	54360030	+	Missense_Mutation	SNP	A	G	G	rs146463327		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:54360030A>G	uc004dtd.1	-	2	516	c.77T>C	c.(76-78)GTT>GCT	p.V26A	WNK3_uc004dtc.1_Missense_Mutation_p.V26A	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	26					intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						GACCTGGGGAACTCTGTTTTC	0.418000													23	44					0	0	0.003330	0	0
FAM123B	139285	broad.mit.edu	37	X	63410602	63410602	+	Silent	SNP	A	G	G			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:63410602A>G	uc004dvo.2	-	2	2838	c.2565T>C	c.(2563-2565)CAT>CAC	p.H855H		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	855					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						AGAATCGACTATGGTAGTTGT	0.547000													2	6					0	0	0.004672	0	0
MED12	9968	broad.mit.edu	37	X	70348501	70348501	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:70348501C>T	uc004dyy.2	+	24	3607	c.3408C>T	c.(3406-3408)ATC>ATT	p.I1136I	MED12_uc011mpq.1_Silent_p.I1136I|MED12_uc004dyz.2_Silent_p.I1136I|MED12_uc004dza.2_Silent_p.I983I|MED12_uc010nla.2_5'Flank	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1136					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CCATCCTCATCGCTCGGCAGT	0.498000											OREG0019857	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	50					0	0	0.010729	0	0
NONO	4841	broad.mit.edu	37	X	70511803	70511803	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:70511803G>A	uc004dzo.2	+	5	1039	c.329G>A	c.(328-330)GGA>GAA	p.G110E	BCYRN1_uc011mpt.1_Intron|NONO_uc004dzn.2_Missense_Mutation_p.G110E|NONO_uc004dzp.2_Missense_Mutation_p.G110E|NONO_uc011mpv.1_Missense_Mutation_p.G21E|NONO_uc004dzq.2_5'Flank	NM_001145408	NP_001138880	Q15233	NONO_HUMAN	non-POU domain containing, octamer-binding	110	DBHS.|RRM 1.				DNA recombination|DNA repair|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nuclear matrix|paraspeckles	DNA binding|identical protein binding|nucleotide binding|RNA binding		NONO/TFE3(2)	ovary(2)|kidney(2)	4	Renal(35;0.156)					AAGGATAAAGGATTTGGCTTT	0.428000			T	TFE3	papillary renal cancer								36	88					0	0	0.013114	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960771	73960771	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:73960771C>T	uc004eby.2	-	3	4238	c.3621G>A	c.(3619-3621)GGG>GGA	p.G1207G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1207					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTTTTTCAATCCCCTTGTTGT	0.438000													14	50					0	0	0.004007	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960839	73960839	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:73960839C>A	uc004eby.2	-	3	4170	c.3553G>T	c.(3553-3555)GGG>TGG	p.G1185W		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1185					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTCATAGCCCCACTCTTGCTG	0.408000													34	66					1.84765e-07	1.86525e-07	0.003755	1	0
ATRX	546	broad.mit.edu	37	X	76937624	76937624	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:76937624C>T	uc004ecp.3	-	9	3356	c.3124G>A	c.(3124-3126)GGA>AGA	p.G1042R	ATRX_uc004ecq.3_Missense_Mutation_p.G1004R|ATRX_uc004eco.3_Missense_Mutation_p.G827R|ATRX_uc004ecr.2_Missense_Mutation_p.G974R|ATRX_uc010nlx.1_Missense_Mutation_p.G1013R|ATRX_uc010nly.1_Missense_Mutation_p.G987R	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1042					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTCTTTTCTCCATCAGTTGTT	0.328000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						16	74					0	0	0.003163	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913684	77913684	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:77913684C>T	uc004edc.1	-	2	530	c.234G>A	c.(232-234)AAG>AAA	p.K78K		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	78	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						ACTCTGGGGTCTTTTGGGCCT	0.612000													6	14					0	0	0.001168	0	0
P2RY10	27334	broad.mit.edu	37	X	78216762	78216762	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:78216762G>A	uc004ede.2	+	4	1114	c.745G>A	c.(745-747)GCT>ACT	p.A249T	P2RY10_uc004edf.2_Missense_Mutation_p.A249T	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	249	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						GTTCATGTGTGCTGCAGTCTT	0.438000													20	22					0	0	0.010504	0	0
TBX22	50945	broad.mit.edu	37	X	79286598	79286598	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:79286598C>T	uc010nmg.1	+	9	1685	c.1551C>T	c.(1549-1551)AAC>AAT	p.N517N	TBX22_uc004edi.1_Silent_p.N397N|TBX22_uc004edj.1_Silent_p.N517N	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	517					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						CAGCAATTAACCATTACCTTT	0.323000													12	24					0	0	0.003163	0	0
FAM46D	169966	broad.mit.edu	37	X	79699086	79699086	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:79699086C>T	uc004edl.1	+	5	1382	c.1048C>T	c.(1048-1050)CAG>TAG	p.Q350*	FAM46D_uc004edm.1_Nonsense_Mutation_p.Q350*	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	350										lung(2)	2						TTGCTTTTATCAGCCTGCTCC	0.453000													26	41					0	0	0.007291	0	0
TCEAL5	340543	broad.mit.edu	37	X	102529150	102529150	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:102529150C>T	uc004ejz.1	-	3	637	c.342G>A	c.(340-342)CGG>CGA	p.R114R		NM_001012979	NP_001012997	Q5H9L2	TCAL5_HUMAN	transcription elongation factor A (SII)-like 5	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(1)|breast(1)	2						TTTTTGCTTTCCGGGGCACAT	0.582000													18	100					0	0	0.007413	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104512186	104512186	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:104512186G>A	uc004elz.1	+	5	1415	c.659G>A	c.(658-660)GGA>GAA	p.G220E		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	220	Ig-like C2-type 2.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						AAATATGAAGGAAAACTTGTA	0.333000													30	43					0	0	0.012213	0	0
COL4A6	1288	broad.mit.edu	37	X	107418946	107418946	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:107418946C>T	uc004enw.3	-	29	2874	c.2771G>A	c.(2770-2772)GGA>GAA	p.G924E	COL4A6_uc004env.3_Missense_Mutation_p.G923E|COL4A6_uc011msn.1_Missense_Mutation_p.G923E|COL4A6_uc010npk.2_Missense_Mutation_p.G923E	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	924	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TCCTGGAATTCCTTTTAATCC	0.473000									Alport_syndrome_with_Diffuse_Leiomyomatosis				7	41					0	0	0.003080	0	0
LHFPL1	340596	broad.mit.edu	37	X	111914491	111914491	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:111914491G>A	uc004epq.2	-	2	461	c.128C>T	c.(127-129)TCA>TTA	p.S43L	LHFPL1_uc004epp.2_Missense_Mutation_p.S66L|LHFPL1_uc010nqa.2_Intron|LHFPL1_uc010nqb.2_Missense_Mutation_p.S43L	NM_178175	NP_835469	Q86WI0	LHPL1_HUMAN	lipoma HMGIC fusion partner-like 1 precursor	43						integral to membrane					0						TGTGCTGAATGACACTGGCTT	0.542000													86	140					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	X	114953364	114953364	+	RNA	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:114953364G>A	uc004eqf.2	-	1		c.301C>T								full-length cDNA clone CS0DJ015YA07 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).																		GTTGCCCGTCGAATCGGAATC	0.443000													56	64					0	0	0.014410	0	0
AGTR2	186	broad.mit.edu	37	X	115304558	115304558	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:115304558G>A	uc004eqh.3	+	3	1232	c.1025G>A	c.(1024-1026)GGG>GAG	p.G342E		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	342	Cytoplasmic (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						TGGCTCCAAGGGAAAAGAGAG	0.438000													34	69					0	0	0.004289	0	0
WDR44	54521	broad.mit.edu	37	X	117527156	117527156	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:117527156C>T	uc004eqn.2	+	4	1173	c.748C>T	c.(748-750)CCT>TCT	p.P250S	WDR44_uc004eqo.2_Missense_Mutation_p.P250S|WDR44_uc011mtr.1_Missense_Mutation_p.P225S|WDR44_uc010nqi.2_5'UTR	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	250	Pro-rich.			P -> L (in Ref. 2; CAL38662).		cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						ACCCCCACCTCCTTCTCGACC	0.463000													41	200					0	0	0.014410	0	0
CXorf56	63932	broad.mit.edu	37	X	118678358	118678358	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:118678358C>T	uc004erk.1	-	4	427	c.381G>A	c.(379-381)GGG>GGA	p.G127G	CXorf56_uc004erj.1_Silent_p.G78G|CXorf56_uc011mtu.1_Silent_p.G113G	NM_022101	NP_071384	Q9H5V9	CX056_HUMAN	hypothetical protein LOC63932	127							protein binding				0						TGTTCGTTTTCCCAAAGCCCT	0.443000													18	94					0	0	0.008871	0	0
RHOXF2B	727940	broad.mit.edu	37	X	119293197	119293197	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:119293197C>T	uc004esl.3	+	2	546	c.356C>T	c.(355-357)TCG>TTG	p.S119L		NM_001099685	NP_001093155	P0C7M4	RHF2B_HUMAN	Rhox homeobox family, member 2B	119						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGCAGTATTCGCGCCCACAG	0.667000													3	16					0	0	0.004672	0	0
ZBTB33	10009	broad.mit.edu	37	X	119389146	119389146	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:119389146C>T	uc004esn.1	+	2	2104	c.1876C>T	c.(1876-1878)CCA>TCA	p.P626S	ZBTB33_uc010nqm.1_Missense_Mutation_p.P626S	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	626	Interaction with CTNND1 (By similarity).|Required for DNA-binding (By similarity).				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AAAAGAACCTCCAGTAGGGAC	0.368000													29	90					0	0	0.010818	0	0
THOC2	57187	broad.mit.edu	37	X	122769997	122769997	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:122769997G>A	uc004etu.2	-	19	1983	c.1951C>T	c.(1951-1953)CGT>TGT	p.R651C	THOC2_uc011muh.1_Missense_Mutation_p.R576C	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	651					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GGATATTTACGAAAAACTGCA	0.323000													12	88					0	0	0.002450	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685886	125685886	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:125685886C>T	uc004eul.2	-	1	957	c.706G>A	c.(706-708)GAG>AAG	p.E236K		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	236										skin(3)|ovary(1)	4						AGACCCACCTCGCTATGCCAG	0.652000													23	28					0	0	0.003954	0	0
MCF2	4168	broad.mit.edu	37	X	138697067	138697067	+	Missense_Mutation	SNP	C	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:138697067C>A	uc004fau.2	-	10	1630	c.1336G>T	c.(1336-1338)GGG>TGG	p.G446W	MCF2_uc004fav.2_Missense_Mutation_p.G446W|MCF2_uc011mwl.1_Missense_Mutation_p.G407W|MCF2_uc010nsh.1_Missense_Mutation_p.G446W|MCF2_uc011mwm.1_Missense_Mutation_p.G407W|MCF2_uc011mwn.1_Missense_Mutation_p.G591W|MCF2_uc004faw.2_Missense_Mutation_p.G506W|MCF2_uc011mwo.1_Missense_Mutation_p.G506W	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	446					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					AATGGTGTCCCAGATGTGACC	0.373000													77	125					7.49063e-41	7.67156e-41	0.014410	1	0
MAGEC1	9947	broad.mit.edu	37	X	140993623	140993623	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:140993623C>T	uc004fbt.2	+	4	719	c.433C>T	c.(433-435)CAG>TAG	p.Q145*	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	145							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTATTTTCCAGAGTTCCCC	0.498000										HNSCC(15;0.026)			26	55					0	0	0.006320	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995218	140995218	+	Silent	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:140995218C>T	uc004fbt.2	+	4	2314	c.2028C>T	c.(2026-2028)CTC>CTT	p.L676L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	676							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					AATCTCCTCTCCAGAGTCCTG	0.567000										HNSCC(15;0.026)			39	77					0	0	0.005524	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995292	140995292	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:140995292G>A	uc004fbt.2	+	4	2388	c.2102G>A	c.(2101-2103)GGA>GAA	p.G701E	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	701							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCTTGAGGGAGAGGACTCC	0.567000										HNSCC(15;0.026)			14	49					0	0	0.001855	0	0
UBE2NL	389898	broad.mit.edu	37	X	142967575	142967575	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:142967575G>A	uc004fca.2	+	1	403	c.373G>A	c.(373-375)GAT>AAT	p.D125N		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	125							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					ATTAGCAAATGATGTAGTGGA	0.448000													59	122					0	0	0.014410	0	0
CXorf40B	541578	broad.mit.edu	37	X	149100861	149100861	+	Silent	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:149100861G>A	uc004fdy.2	-	5	894	c.378C>T	c.(376-378)AAC>AAT	p.N126N	CXorf40B_uc011mxs.1_RNA	NM_001013845	NP_001013867	Q96DE9	CX04B_HUMAN	hypothetical protein LOC541578	126											0	Acute lymphoblastic leukemia(192;6.56e-05)					ACCACCTGGGGTTTGAAATCA	0.502000													42	133					0	0	0.014410	0	0
PASD1	139135	broad.mit.edu	37	X	150844513	150844513	+	Missense_Mutation	SNP	G	C	C			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:150844513G>C	uc004fev.3	+	16	2552	c.2220G>C	c.(2218-2220)CAG>CAC	p.Q740H		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	740						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGATCCACAGGCTTTCCAAG	0.527000													54	102					0	0	0.014410	0	0
CNGA2	1260	broad.mit.edu	37	X	150912051	150912051	+	Missense_Mutation	SNP	T	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:150912051T>A	uc004fey.1	+	7	1300	c.1076T>A	c.(1075-1077)ATT>AAT	p.I359N		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	359	Helical; Name=H5; (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GACTTCCTGATTGGCGTCCTC	0.512000													35	60					0	0	0.005524	0	0
CETN2	1069	broad.mit.edu	37	X	151997732	151997732	+	Missense_Mutation	SNP	C	T	T			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:151997732C>T	uc004fgq.2	-	3	299	c.252G>A	c.(250-252)ATG>ATA	p.M84I	CETN2_uc004fgr.2_Missense_Mutation_p.M13I|NSDHL_uc004fgt.1_5'Flank|NSDHL_uc004fgs.1_5'Flank	NM_004344	NP_004335	P41208	CETN2_HUMAN	caltractin	84	EF-hand 2.				cell division|centriole replication|G2/M transition of mitotic cell cycle|mitosis|nucleotide-excision repair|regulation of cytokinesis	centriole|cytosol|XPC complex	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CACCAAAGTTCATTTTTCCTG	0.408000								Direct_reversal_of_damage|NER					27	90					0	0	0.012213	0	0
ZNF185	7739	broad.mit.edu	37	X	152106682	152106682	+	Missense_Mutation	SNP	G	A	A			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:152106682G>A	uc010ntv.1	+	15	1220	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K	ZNF185_uc011myg.1_Missense_Mutation_p.E427K|ZNF185_uc011myh.1_Missense_Mutation_p.E398K|ZNF185_uc011myi.1_Missense_Mutation_p.E366K|ZNF185_uc011myj.1_Missense_Mutation_p.E336K|ZNF185_uc011myk.1_Missense_Mutation_p.E396K|ZNF185_uc004fgw.3_Missense_Mutation_p.E174K|ZNF185_uc004fgu.2_Missense_Mutation_p.E24K|ZNF185_uc004fgv.2_Missense_Mutation_p.E92K	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	395						cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGCCCAGGAGGATGCAAA	0.562000													4	6					0	0	0.001168	0	0
NEXN	91624	broad.mit.edu	37	1	78383723	78383738	+	Splice_Site	DEL	GGTAAGAAGCTTGAGG	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr1:78383723_78383738delGGTAAGAAGCTTGAGG	uc001dic.3	+	4	595	c.298_splice	c.e4+1	p.G100_splice	NEXN_uc001dia.3_Splice_Site_p.G100_splice|NEXN_uc009wcb.1_Splice_Site_p.G36_splice|NEXN_uc001dib.3_Splice_Site_p.G36_splice|NEXN_uc001did.1_Splice_Site_p.G24_splice|NEXN_uc001dif.1_5'Flank	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)						regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		AAAATTAACAGGTAAGAAGCTTGAGGGGTAAATAGT	0.287													13	109	---	---	---	---					
DYNC2H1	79659	broad.mit.edu	37	11	103090657	103090657	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr11:103090657delA	uc001pho.2	+	56	8990	c.8846delA	c.(8845-8847)CAAfs	p.Q2949fs	DYNC2H1_uc001phn.1_Frame_Shift_Del_p.Q2949fs|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2949	Potential.|Stalk (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GCTAGTGAGCAAAAAACAGAA	0.259													2	4	---	---	---	---					
EIF2AK4	440275	broad.mit.edu	37	15	40282508	40282508	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:40282508delT	uc001zkm.1	+	16	2611	c.2561delT	c.(2560-2562)ATTfs	p.I854fs	EIF2AK4_uc010bbj.1_Frame_Shift_Del_p.I555fs|EIF2AK4_uc001zkn.1_5'Flank	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	854	Protein kinase 2.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		CCTGTCAACATTTTTTTGGAT	0.358													7	587	---	---	---	---					
GANC	2595	broad.mit.edu	37	15	42632918	42632918	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr15:42632918delA	uc001zpi.2	+	18	2432	c.2118delA	c.(2116-2118)CTAfs	p.L706fs		NM_198141	NP_937784	Q8TET4	GANC_HUMAN	glucosidase, alpha; neutral C	706					carbohydrate metabolic process		carbohydrate binding|maltose alpha-glucosidase activity			central_nervous_system(2)	2		all_cancers(109;3.08e-16)|all_epithelial(112;7.48e-15)|Lung NSC(122;3.08e-09)|all_lung(180;1.48e-08)|Melanoma(134;0.0574)|Colorectal(260;0.153)		GBM - Glioblastoma multiforme(94;1.06e-06)		CTGATGAACTAAAGACTTTTG	0.239													36	111	---	---	---	---					
VPS4A	27183	broad.mit.edu	37	16	69355168	69355168	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:69355168delA	uc002eww.2	+	9	1194	c.1066delA	c.(1066-1068)AAAfs	p.K356fs		NM_013245	NP_037377	Q9UN37	VPS4A_HUMAN	vacuolar protein sorting factor 4A	356					cell cycle|cellular membrane organization|cytokinesis|endosome transport|protein transport	cytosol|late endosome membrane|midbody|perinuclear region of cytoplasm	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein domain specific binding				0		Ovarian(137;0.101)				CACACACTTCAAAAAGGTGAG	0.587													2	4	---	---	---	---					
USP10	9100	broad.mit.edu	37	16	84779250	84779250	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr16:84779250delC	uc002fii.2	+	4	1305	c.1163delC	c.(1162-1164)TCAfs	p.S388fs	USP10_uc010voe.1_Frame_Shift_Del_p.S392fs|USP10_uc010vof.1_Intron|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	388					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						GTTCCGGTTTCAGAGGATCCT	0.468													9	19	---	---	---	---					
CCDC144B	284047	broad.mit.edu	37	17	18498059	18498060	+	Splice_Site	INS	-	A	A	rs66528329		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:18498059_18498060insA	uc002gub.1	-	9	1952	c.1867_splice	c.e9-1	p.E623_splice	CCDC144B_uc002gua.3_RNA|CCDC144B_uc010vyc.1_RNA	NM_182568	NP_872374			coiled-coil domain containing 144B											ovary(1)|skin(1)	2						CTAAGTTGTTCATCAGCAACAT	0.406													4	7	---	---	---	---					
PRKAR1A	5573	broad.mit.edu	37	17	66511673	66511673	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr17:66511673delA	uc002jhg.2	+	2	313	c.133delA	c.(133-135)AGAfs	p.R45fs	PRKAR1A_uc002jhh.2_Frame_Shift_Del_p.R45fs|PRKAR1A_uc002jhi.2_Frame_Shift_Del_p.R45fs|PRKAR1A_uc002jhj.2_Frame_Shift_Del_p.R45fs|PRKAR1A_uc002jhk.2_5'UTR|PRKAR1A_uc002jhl.2_Frame_Shift_Del_p.R45fs|PRKAR1A_uc002jhm.2_Frame_Shift_Del_p.R45fs	NM_212471	NP_997636	P10644	KAP0_HUMAN	cAMP-dependent protein kinase, regulatory	45	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity|protein binding			adrenal_gland(4)|lung(3)|thyroid(2)|soft_tissue(2)|breast(1)	12	Breast(10;1.64e-13)					TCGACCTGAGAGACCCATGGC	0.453			T|Mis|N|F|S	RET	papillary thyroid	myxoma|endocrine|papillary thyroid			Carney_Complex|Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial|Cardiac_Myxomas_Familial_Clustering_of				17	28	---	---	---	---					
SFRS16	11129	broad.mit.edu	37	19	45567607	45567609	+	In_Frame_Del	DEL	CTC	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr19:45567607_45567609delCTC	uc002pak.2	+	13	1226_1228	c.1128_1130delCTC	c.(1126-1131)CGCTCC>CGC	p.S385del	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_In_Frame_Del_p.S323del|SFRS16_uc002pam.2_In_Frame_Del_p.S385del	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	385	Ser-rich.|Arg-rich.				mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GCAGCCGCCGctcctcctcctcc	0.522													6	12	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1389206	1389207	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr4:1389206_1389207delCA	uc003gdf.2	+	1	3867_3868	c.907_908delCA	c.(907-909)CACfs	p.H303fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	303					ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			CCCGCCTGCTCACACGTGCCGA	0.673													7	667	---	---	---	---					
TIGD6	81789	broad.mit.edu	37	5	149375600	149375600	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:149375600delT	uc003lri.2	-	2	1074	c.312delA	c.(310-312)AAAfs	p.K104fs	TIGD6_uc003lrj.2_Frame_Shift_Del_p.K104fs	NM_030953	NP_112215	Q17RP2	TIGD6_HUMAN	hypothetical protein LOC81789	104	HTH CENPB-type.|H-T-H motif (By similarity).				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			AGTTTAGTGCTTTTTTCCGAA	0.423													8	354	---	---	---	---					
ODZ2	57451	broad.mit.edu	37	5	167625861	167625861	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr5:167625861delC	uc010jjd.2	+	16	2877	c.2877delC	c.(2875-2877)TTCfs	p.F959fs	ODZ2_uc003lzr.3_Frame_Shift_Del_p.F736fs|ODZ2_uc003lzt.3_Frame_Shift_Del_p.F332fs|ODZ2_uc010jje.2_Frame_Shift_Del_p.F230fs	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		TCTCCAGGTTCGACCTGATCG	0.527													59	169	---	---	---	---					
COL1A2	1278	broad.mit.edu	37	7	94050333	94050333	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr7:94050333delC	uc003ung.1	+	38	2779	c.2308delC	c.(2308-2310)CCCfs	p.P770fs	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	770			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TCCAAATGGTCCCCCCGGTCC	0.453										HNSCC(75;0.22)			7	180	---	---	---	---					
ISCA1	81689	broad.mit.edu	37	9	88881100	88881101	+	Frame_Shift_Ins	INS	-	TT	TT	rs140944675		TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chr9:88881100_88881101insTT	uc004aop.2	-	4	364_365	c.247_248insAA	c.(247-249)AGAfs	p.R83fs	GOLM1_uc010mqd.1_Intron	NM_030940	NP_112202	Q9BUE6	ISCA1_HUMAN	HESB like domain containing 2 precursor	83					iron-sulfur cluster assembly	mitochondrion	iron-sulfur cluster binding|metal ion binding|structural molecule activity				0				OV - Ovarian serous cystadenocarcinoma(323;5.4e-34)|Lung(182;0.0375)		GATGAATACTCTGACTCCTTGG	0.287													32	95	---	---	---	---					
SYN1	6853	broad.mit.edu	37	X	47434113	47434113	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BF-A3DL-01A-11D-A20D-08	TCGA-BF-A3DL-10A-02D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	69e158a8-b36a-41ca-b734-95f28e6678da	37fb4b74-e0ed-42d7-9460-05778af2eaf5	g.chrX:47434113delG	uc004die.2	-	11	1496	c.1367delC	c.(1366-1368)CCGfs	p.P456fs	SYN1_uc004did.2_Frame_Shift_Del_p.P456fs	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	456	D; Pro-rich linker.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						CTGCTGAGCCGGGGGCCCTGC	0.672													2	4	---	---	---	---					
