Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLCH2	9651	broad.mit.edu	37	1	2430220	2430220	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:2430220T>C	uc001aji.1	+	18	2661	c.2387T>C	c.(2386-2388)CTC>CCC	p.L796P	PLCH2_uc010nyz.1_Missense_Mutation_p.L584P|PLCH2_uc009vle.1_Missense_Mutation_p.L548P|PLCH2_uc001ajj.1_Missense_Mutation_p.L584P|PLCH2_uc001ajk.1_Missense_Mutation_p.L584P|PLCH2_uc001ajl.1_5'UTR	NM_014638	NP_055453	O75038	PLCH2_HUMAN	phospholipase C, eta 2	796	C2.				intracellular signal transduction|lipid catabolic process	cytoplasm|plasma membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			central_nervous_system(3)|ovary(1)|skin(1)	5	all_cancers(77;0.000161)|all_epithelial(69;5.98e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;7.32e-16)|all_lung(118;1.15e-06)|Lung NSC(185;6.26e-05)|Renal(390;0.00571)|Breast(487;0.00832)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;1.44e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.78e-23)|GBM - Glioblastoma multiforme(42;2.8e-08)|Colorectal(212;4.19e-05)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00034)|BRCA - Breast invasive adenocarcinoma(365;0.00443)|KIRC - Kidney renal clear cell carcinoma(229;0.00548)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.2)		ATCATTGGGCTCCCTGTGGAC	0.662000													5	14					0	0	0.001984	0	0
TP73	7161	broad.mit.edu	37	1	3638759	3638759	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:3638759G>A	uc001akp.2	+	5	714	c.604G>A	c.(604-606)GAC>AAC	p.D202N	TP73_uc001akq.2_Missense_Mutation_p.D202N|TP73_uc010nzj.1_Missense_Mutation_p.D153N|TP73_uc001akr.2_Missense_Mutation_p.D153N|TP73_uc009vlk.1_Missense_Mutation_p.D153N|TP73_uc001aks.2_Missense_Mutation_p.D153N|TP73_uc010nzk.1_Missense_Mutation_p.D131N	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	202	DNA-binding (Potential).				cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		GCTCGGGAGGGACTTCAACGA	0.657000													11	37					0	0	0.000978	0	0
PTCHD2	57540	broad.mit.edu	37	1	11580888	11580888	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:11580888C>T	uc001ash.3	+	10	2483	c.2345C>T	c.(2344-2346)TCC>TTC	p.S782F	PTCHD2_uc001asi.1_Missense_Mutation_p.S782F	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	782	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GAGGGCATCTCCTGCATCACC	0.637000													11	10					0	0	0.008291	0	0
AADACL3	126767	broad.mit.edu	37	1	12785679	12785679	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:12785679G>A	uc009vnn.1	+	4	1002	c.769G>A	c.(769-771)GAA>AAA	p.E257K	AADACL3_uc001aug.1_Missense_Mutation_p.E187K	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	257							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TGCTTACTTGGAAGTAAGTGT	0.502000													34	111					0	0	0.003755	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854129	12854129	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:12854129G>A	uc001auj.1	+	3	456	c.353G>A	c.(352-354)GGA>GAA	p.G118E		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	118											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGATGGCCTGGAGCCTGGGCC	0.532000													12	353					0	0	0.003610	0	0
EPHA2	1969	broad.mit.edu	37	1	16456043	16456043	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:16456043A>C	uc001aya.1	-	16	2848	c.2711T>G	c.(2710-2712)GTG>GGG	p.V904G		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	904	SAM.|Mediates interaction with ARHGEF16 and ELMO2.|Cytoplasmic (Potential).|Negatively regulates interaction with ARHGEF16.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GCGGAAGGGCACCCCCTCCGA	0.458000													7	27					0	0	0.004990	0	0
NBPF1	55672	broad.mit.edu	37	1	16907915	16907915	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:16907915C>T	uc009vos.1	-	15	2267	c.1379G>A	c.(1378-1380)AGG>AAG	p.R460K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.R189K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	460	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCAGTGTTACCTGGGGGCAGA	0.438000													54	442					0	0	0.003610	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	17934436	17934436	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:17934436C>T	uc001ban.2	+	7	732	c.573C>T	c.(571-573)GTC>GTT	p.V191V	ARHGEF10L_uc009vpe.1_Silent_p.V191V|ARHGEF10L_uc001bao.2_Silent_p.V191V|ARHGEF10L_uc001bap.2_Silent_p.V191V|ARHGEF10L_uc010ocr.1_5'UTR	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	191					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		AGGTCGAGGTCGAGCCCGCCA	0.647000													5	6					0	0	0.000602	0	0
CDC42	998	broad.mit.edu	37	1	22413183	22413183	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:22413183C>T	uc001bfq.2	+	6	602	c.310C>T	c.(310-312)CAC>TAC	p.H104Y	CDC42_uc009vqg.1_Missense_Mutation_p.H104Y|CDC42_uc001bfp.2_Missense_Mutation_p.H104Y|CDC42_uc001bfr.2_Missense_Mutation_p.H104Y|CDC42_uc010odr.1_Missense_Mutation_p.H149Y|CDC42_uc010ods.1_Missense_Mutation_p.H146Y|CDC42_uc009vqh.2_Missense_Mutation_p.H63Y	NM_001039802	NP_001034891	P60953	CDC42_HUMAN	cell division cycle 42 isoform 1	104					actin cytoskeleton organization|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|establishment or maintenance of cell polarity|macrophage differentiation|muscle cell differentiation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of protein complex assembly|positive regulation of muscle cell differentiation|positive regulation of pseudopodium assembly|regulation of filopodium assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|filopodium|plasma membrane	GTP binding|GTPase activity|protein binding|thioesterase binding			haematopoietic_and_lymphoid_tissue(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)|Prostate(1639;0.0792)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0452)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.35e-07)|COAD - Colon adenocarcinoma(152;7.73e-06)|GBM - Glioblastoma multiforme(114;8.62e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000649)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00767)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.207)		GATAACTCACCACTGTCCAAA	0.378000													45	233					0	0	0.002522	0	0
C1QC	714	broad.mit.edu	37	1	22973793	22973793	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:22973793G>A	uc001bgc.3	+	3	358	c.255G>A	c.(253-255)GGG>GGA	p.G85G	C1QC_uc001bga.3_Silent_p.G85G|C1QC_uc001bgb.2_Silent_p.G85G	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	85	Collagen-like.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GCCATCCTGGGAAAAATGGCC	0.557000													25	27					0	0	0.004656	0	0
C1orf128	57095	broad.mit.edu	37	1	24106421	24106421	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:24106421G>A	uc001bhq.2	+	3	440	c.310G>A	c.(310-312)GAG>AAG	p.E104K	uc001bhp.1_5'Flank|C1orf128_uc010oeb.1_Missense_Mutation_p.E11K	NM_020362	NP_065095	Q9GZP4	PITH1_HUMAN	chromosome 1 open reading frame 128	104	PITH.										0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.0034)|all_lung(284;0.00519)|Breast(348;0.0222)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;1.97e-24)|Colorectal(126;5.06e-08)|COAD - Colon adenocarcinoma(152;2.92e-06)|GBM - Glioblastoma multiforme(114;4.4e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|KIRC - Kidney renal clear cell carcinoma(1967;0.00322)|STAD - Stomach adenocarcinoma(196;0.0124)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0837)|LUSC - Lung squamous cell carcinoma(448;0.185)		ACACCCCTCTGAGATGAGACT	0.403000													45	50					0	0	0.003610	0	0
ARID1A	8289	broad.mit.edu	37	1	27101084	27101084	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:27101084C>T	uc001bmv.1	+	18	4739	c.4366C>T	c.(4366-4368)CCA>TCA	p.P1456S	ARID1A_uc001bmt.1_Missense_Mutation_p.P1455S|ARID1A_uc001bmu.1_Intron|ARID1A_uc001bmw.1_Missense_Mutation_p.P1073S|ARID1A_uc001bmx.1_Missense_Mutation_p.P302S|ARID1A_uc009vsm.1_Intron|ARID1A_uc009vsn.1_5'UTR	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1456					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GAACCAATTTCCATTCCAGTT	0.582000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								20	106					0	0	0.001523	0	0
MAP3K6	9064	broad.mit.edu	37	1	27685037	27685037	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:27685037G>A	uc001bny.1	-	20	2898	c.2649C>T	c.(2647-2649)CTC>CTT	p.L883L	MAP3K6_uc009vsw.1_Silent_p.L875L|MAP3K6_uc001bnz.1_Silent_p.L406L	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	883	Protein kinase.				activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AAGTTCGGAGGAGAAAGGCTT	0.637000													33	42					0	0	0.006230	0	0
HMGB4	127540	broad.mit.edu	37	1	34330204	34330205	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:34330204_34330205GA>AC	uc001bxp.2	+	2	2155_2156	c.412_413GA>AC	c.(412-414)GAG>ACG	p.E138T	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Missense_Mutation_p.E64T	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	138						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GACAGACCTGGAGAAGCACCCT	0.525000													40	31					0	0	0.004672	0	0
GJB4	127534	broad.mit.edu	37	1	35227190	35227190	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:35227190A>T	uc001bxv.1	+	2	705	c.335A>T	c.(334-336)AAT>ATT	p.N112I	GJB4_uc001bxw.3_Missense_Mutation_p.N112I	NM_153212	NP_694944	Q9NTQ9	CXB4_HUMAN	gap junction protein, beta 4	112	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane	gap junction channel activity			ovary(2)|central_nervous_system(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				CACGGGCCCAATGCCCCGTCC	0.627000													19	56					0	0	0.007413	0	0
MACF1	23499	broad.mit.edu	37	1	39905109	39905109	+	Silent	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:39905109C>G	uc010oiu.1	+	37	13844	c.13713C>G	c.(13711-13713)GTC>GTG	p.V4571V	MACF1_uc010ois.1_Silent_p.V4069V	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGGATATTGTCCATGACTTGG	0.433000													3	79					0	0	0.000248	0	0
STIL	6491	broad.mit.edu	37	1	47746374	47746374	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:47746374C>T	uc001crc.1	-	12	1911	c.1756G>A	c.(1756-1758)GAA>AAA	p.E586K	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.E539K|STIL_uc010omo.1_Missense_Mutation_p.E586K|STIL_uc001crd.1_Missense_Mutation_p.E586K|STIL_uc001cre.1_Missense_Mutation_p.E586K|STIL_uc001crf.1_Missense_Mutation_p.E199K|STIL_uc001crg.1_Missense_Mutation_p.E539K	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	586	PIN1-binding (By similarity).				cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				ATCTGAAGTTCCATTGGTCTT	0.438000													41	71					0	0	0.008740	0	0
C1orf123	54987	broad.mit.edu	37	1	53684129	53684129	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:53684129G>A	uc001cvd.2	-	4	228	c.186C>T	c.(184-186)TCC>TCT	p.S62S	C1orf123_uc001cvc.2_5'UTR|C1orf123_uc001cve.2_Silent_p.S43S	NM_017887	NP_060357	Q9NWV4	CA123_HUMAN	hypothetical protein LOC54987	62										pancreas(2)	2						TCTGGACCATGGAAGCACTGC	0.527000													16	33					0	0	0.004007	0	0
ROR1	4919	broad.mit.edu	37	1	64605887	64605887	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:64605887G>A	uc001dbj.2	+	6	1105	c.706G>A	c.(706-708)GAT>AAT	p.D236N	ROR1_uc001dbi.3_Missense_Mutation_p.D236N|uc001dbl.2_Intron	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	236	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						CCCGTACTGCGATGAAACTTC	0.478000													53	44					0	0	0.003610	0	0
ABCA4	24	broad.mit.edu	37	1	94485300	94485300	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:94485300C>T	uc001dqh.2	-	36	5138	c.5034G>A	c.(5032-5034)GTG>GTA	p.V1678V	ABCA4_uc009wdp.1_5'Flank	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1678	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CCACAGCATCCACTGAAGTGG	0.393000													9	8					0	0	0.004482	0	0
EPS8L3	79574	broad.mit.edu	37	1	110294734	110294734	+	Silent	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:110294734G>T	uc001dyr.1	-	15	1462	c.1317C>A	c.(1315-1317)CCC>CCA	p.P439P	EPS8L3_uc001dys.1_Intron|EPS8L3_uc001dyq.1_Silent_p.P440P|EPS8L3_uc009wfm.1_Intron|EPS8L3_uc009wfn.1_Intron	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	439						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		GCCTGGAGTTGGGGTCCCCAG	0.562000													55	225					3.36121e-32	4.28162e-32	0.003610	1	0
KCND3	3752	broad.mit.edu	37	1	112329705	112329705	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:112329705G>T	uc001ebu.1	-	3	1610	c.1130C>A	c.(1129-1131)ACG>AAG	p.T377K	KCND3_uc001ebv.1_Missense_Mutation_p.T377K	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	377						sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		CCCTGCAATCGTCTTAGGCAC	0.527000													31	42					2.42023e-17	3.06433e-17	0.003271	1	0
HIPK1	204851	broad.mit.edu	37	1	114512713	114512713	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:114512713G>A	uc001eem.2	+	14	3068	c.2907G>A	c.(2905-2907)TTG>TTA	p.L969L	HIPK1_uc001eel.2_Silent_p.L969L|HIPK1_uc001een.2_Silent_p.L969L|HIPK1_uc001eeo.2_Silent_p.L595L|HIPK1_uc001eep.2_Silent_p.L575L|HIPK1_uc001eeq.2_Silent_p.L261L	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	969	Required for localization to nuclear speckles (By similarity).|Interaction with TP53.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATCCGTTTTGGAGGGGCCTG	0.527000													35	115					0	0	0.003755	0	0
VPS72	6944	broad.mit.edu	37	1	151156850	151156850	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:151156850G>A	uc001exe.1	-	4	548	c.505C>T	c.(505-507)CAG>TAG	p.Q169*	VPS72_uc001exf.1_Nonsense_Mutation_p.Q169*	NM_005997	NP_005988	Q15906	VPS72_HUMAN	transcription factor-like 1	169	Potential.				chromatin modification|negative regulation of transcription from RNA polymerase II promoter	nucleus|protein complex	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|pancreas(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			AGTTCCTCCTGGGTTAGTGGC	0.557000													39	171					0	0	0.007835	0	0
KPRP	448834	broad.mit.edu	37	1	152733110	152733110	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:152733110C>T	uc001fal.1	+	2	1104	c.1046C>T	c.(1045-1047)CCC>CTC	p.P349L		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	349	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGATTCCTCCCATCAGACGC	0.652000													8	40					0	0	0.006214	0	0
PKLR	5313	broad.mit.edu	37	1	155264147	155264147	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:155264147C>T	uc001fkb.3	-	7	1034	c.995G>A	c.(994-996)GGC>GAC	p.G332D	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Missense_Mutation_p.G301D	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	332			G -> S (in PKRD; loss of catalytical activity).		endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	CACCATGATGCCGTCGCTCAC	0.572000													7	39					0	0	0.001984	0	0
NHLH1	4807	broad.mit.edu	37	1	160340656	160340656	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:160340656C>T	uc001fwa.2	+	2	577	c.135C>T	c.(133-135)GCC>GCT	p.A45A		NM_005598	NP_005589	Q02575	HEN1_HUMAN	nescient helix loop helix 1	45					cell differentiation|central nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_cancers(52;7.11e-19)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGGGCCAGGCCCGAGGCCCAG	0.642000													7	20					0	0	0.003080	0	0
PRRX1	5396	broad.mit.edu	37	1	170695431	170695431	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:170695431C>T	uc001ghf.2	+	3	535	c.488C>T	c.(487-489)TCC>TTC	p.S163F	PRRX1_uc001ghe.2_Missense_Mutation_p.S163F	NM_022716	NP_073207	P54821	PRRX1_HUMAN	paired mesoderm homeobox 1 isoform pmx-1b	163						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AAAAACGCTTCCCTCCTCAAA	0.547000													19	23					0	0	0.008871	0	0
DNM3	26052	broad.mit.edu	37	1	172017777	172017777	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:172017777G>A	uc001gie.2	+	10	1398	c.1222G>A	c.(1222-1224)GCA>ACA	p.A408T	DNM3_uc001gid.3_Missense_Mutation_p.A408T|DNM3_uc009wwb.2_Missense_Mutation_p.A408T|DNM3_uc001gif.2_Missense_Mutation_p.A408T	NM_015569	NP_056384	Q9UQ16	DYN3_HUMAN	dynamin 3 isoform a	408					endocytosis|filopodium assembly|synapse assembly	dendritic spine|microtubule|perinuclear region of cytoplasm|postsynaptic density	GTP binding|GTPase activity|protein binding			breast(1)	1						TCCAGACATGGCATTTGAAGC	0.353000													9	49					0	0	0.006214	0	0
RFWD2	64326	broad.mit.edu	37	1	176050324	176050324	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:176050324G>A	uc001gku.1	-	11	1497	c.1241C>T	c.(1240-1242)GCT>GTT	p.A414V	RFWD2_uc001gkv.1_Missense_Mutation_p.A390V|RFWD2_uc001gkw.1_Missense_Mutation_p.A174V|RFWD2_uc009wwv.2_Missense_Mutation_p.A213V|RFWD2_uc001gkt.1_Missense_Mutation_p.A253V	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	414					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						GAGATCACTAGCATATGACAA	0.353000													29	174					0	0	0.008361	0	0
PAPPA2	60676	broad.mit.edu	37	1	176760578	176760578	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:176760578G>A	uc001gkz.2	+	19	6144	c.4980G>A	c.(4978-4980)CTG>CTA	p.L1660L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1660	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCTCAGAGCTGAATTCTGTGG	0.443000													21	26					0	0	0.001882	0	0
C1orf49	84066	broad.mit.edu	37	1	178489992	178489992	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:178489992C>T	uc001glt.1	+	7	638	c.526C>T	c.(526-528)CAC>TAC	p.H176Y	C1orf49_uc001glu.1_Missense_Mutation_p.H176Y|C1orf49_uc001glv.1_RNA|C1orf49_uc001glw.1_Missense_Mutation_p.H184Y	NM_032126	NP_115502	Q5T0J7	CA049_HUMAN	hypothetical protein LOC84066	176						microtubule cytoskeleton					0						TCCCCTTCATCACTGTGGGAC	0.577000													15	32					0	0	0.004990	0	0
CACNA1E	777	broad.mit.edu	37	1	181727964	181727964	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:181727964C>T	uc001gow.2	+	32	4730	c.4565C>T	c.(4564-4566)TCC>TTC	p.S1522F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1410F|CACNA1E_uc001gox.1_Missense_Mutation_p.S748F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S748F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1522	Helical; Name=S2 of repeat IV.|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATGGTGTTTTCCCTGGAATGT	0.478000													43	47					0	0	0.003610	0	0
GLT25D2	23127	broad.mit.edu	37	1	183933102	183933102	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:183933102G>A	uc001gqr.2	-	6	1257	c.885C>T	c.(883-885)CCC>CCT	p.P295P	GLT25D2_uc010poj.1_Silent_p.P295P|GLT25D2_uc001gqq.2_Silent_p.P32P|GLT25D2_uc001gqs.2_Silent_p.P175P	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	295					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						GGGGCTTCAGGGGGATGGGCA	0.527000													35	26					0	0	0.004289	0	0
KCNT2	343450	broad.mit.edu	37	1	196577427	196577427	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:196577427C>T	uc001gtd.1	-	1	73	c.13G>A	c.(13-15)GAG>AAG	p.E5K	KCNT2_uc001gte.1_Missense_Mutation_p.E5K|KCNT2_uc001gtf.1_Missense_Mutation_p.E5K|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E5K|KCNT2_uc009wyv.1_Missense_Mutation_p.E5K	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	5	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ACTTCGCTCTCCAAATCAACC	0.512000													17	59					0	0	0.006122	0	0
PTPRC	5788	broad.mit.edu	37	1	198711073	198711073	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:198711073G>A	uc001gur.1	+	24	2653	c.2473G>A	c.(2473-2475)GAT>AAT	p.D825N	PTPRC_uc001gus.1_Missense_Mutation_p.D777N|PTPRC_uc001gut.1_Missense_Mutation_p.D664N	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	825	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						GGTGCCTGAGGATCCTCACTT	0.453000													13	23					0	0	0.003163	0	0
CACNA1S	779	broad.mit.edu	37	1	201039473	201039473	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:201039473C>T	uc001gvv.2	-	17	2514	c.2287G>A	c.(2287-2289)GAG>AAG	p.E763K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	763	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGCTGCAGCTCAGCCAGGGGA	0.607000													24	110					0	0	0.006320	0	0
ARL8A	127829	broad.mit.edu	37	1	202104325	202104325	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:202104325C>T	uc001gxk.1	-	6	630	c.464G>A	c.(463-465)CGA>CAA	p.R155Q		NM_138795	NP_620150	Q96BM9	ARL8A_HUMAN	ADP-ribosylation factor-like 8A	155					cell division|chromosome segregation|mitosis|small GTPase mediated signal transduction	late endosome membrane|lysosomal membrane|midbody|spindle midzone	alpha-tubulin binding|beta-tubulin binding|GTP binding|GTPase activity			ovary(2)	2						GCAGATCTCTCGGTCCTGGAT	0.567000											OREG0012976	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	69					0	0	0.001984	0	0
ADIPOR1	51094	broad.mit.edu	37	1	202915610	202915610	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:202915610G>A	uc001gyq.3	-	4	654	c.387C>T	c.(385-387)TTC>TTT	p.F129F	ADIPOR1_uc010pqd.1_Silent_p.F53F|ADIPOR1_uc001gyr.3_Missense_Mutation_p.S18F|ADIPOR1_uc001gys.3_Silent_p.F129F	NM_015999	NP_057083	Q96A54	ADR1_HUMAN	adiponectin receptor 1	129	Cytoplasmic (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane|plasma membrane	hormone binding|protein kinase binding|receptor activity				0			BRCA - Breast invasive adenocarcinoma(75;0.141)			TATGAATGCGGAAGATGCTCT	0.493000													19	84					0	0	0.007413	0	0
CTSE	1510	broad.mit.edu	37	1	206318330	206318330	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:206318330C>T	uc001hdu.2	+	2	206	c.88C>T	c.(88-90)CCG>TCG	p.P30S	CTSE_uc001hdv.2_Missense_Mutation_p.P30S|CTSE_uc010prs.1_Intron	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	30					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			CAGGAGGCATCCGTCCCTCAA	0.557000													36	44					0	0	0.004289	0	0
NSL1	25936	broad.mit.edu	37	1	212964981	212964981	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:212964981G>A	uc001hjn.2	-	1	159	c.125C>T	c.(124-126)TCG>TTG	p.S42L	NSL1_uc001hjm.2_Missense_Mutation_p.S42L|NSL1_uc010pti.1_Missense_Mutation_p.S42L|TATDN3_uc001hjo.2_5'Flank|TATDN3_uc010ptj.1_5'Flank|TATDN3_uc010ptk.1_5'Flank|TATDN3_uc001hjp.2_5'Flank|TATDN3_uc010ptl.1_5'Flank	NM_015471	NP_056286	Q96IY1	NSL1_HUMAN	NSL1, MIND kinetochore complex component isoform	42					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00597)|all cancers(67;0.00893)|GBM - Glioblastoma multiforme(131;0.0514)|Epithelial(68;0.102)		AGCCCGCTTCGAGGTGCAGCG	0.642000													46	78					0	0	0.002852	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220332762	220332762	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:220332762A>T	uc010puk.1	-	29	3391	c.3227T>A	c.(3226-3228)GTT>GAT	p.V1076D	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Missense_Mutation_p.V656D|RAB3GAP2_uc001hmh.2_Missense_Mutation_p.V20D	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	1076					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		TGATTTTCCAACCTAAAATAA	0.269000													7	38					0	0	0.001984	0	0
MIA3	375056	broad.mit.edu	37	1	222832074	222832074	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:222832074C>G	uc001hnl.2	+	19	4627	c.4618C>G	c.(4618-4620)CAA>GAA	p.Q1540E	MIA3_uc001hnm.2_Missense_Mutation_p.Q418E	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1540	Cytoplasmic (Potential).|Potential.				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		GAAACTGAGTCAAGAAGAGTA	0.408000													9	336					0	0	0.006214	0	0
URB2	9816	broad.mit.edu	37	1	229770694	229770694	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:229770694C>T	uc001hts.1	+	4	470	c.334C>T	c.(334-336)CTT>TTT	p.L112F	URB2_uc009xfd.1_Missense_Mutation_p.L112F	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	112						nucleolus				central_nervous_system(2)|ovary(1)	3						TGAGTTCTCTCTTTCGGGATC	0.433000													14	43					0	0	0.006122	0	0
EGLN1	54583	broad.mit.edu	37	1	231557539	231557539	+	Silent	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:231557539G>T	uc001huv.2	-	1	3252	c.96C>A	c.(94-96)CGC>CGA	p.R32R	EGLN1_uc001huu.3_5'Flank	NM_022051	NP_071334	Q9GZT9	EGLN1_HUMAN	egl nine homolog 1	32	MYND-type.				negative regulation of sequence-specific DNA binding transcription factor activity|oxygen homeostasis|response to hypoxia	cytosol	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-proline dioxygenase activity|protein binding|zinc ion binding				0		Prostate(94;0.194)|Acute lymphoblastic leukemia(190;0.244)			Vitamin C(DB00126)	AGCGGCTGCAGCGCAGCAGGT	0.667000													10	8					4.68919e-08	5.86616e-08	0.008291	1	0
KCNK1	3775	broad.mit.edu	37	1	233802631	233802631	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:233802631T>C	uc010pxo.1	+	2	814	c.646T>C	c.(646-648)TTT>CTT	p.F216L	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	216						voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	CCTGGAATCCTTTTATTTTTG	0.483000													3	103					0	0	0.004672	0	0
TBCE	6905	broad.mit.edu	37	1	235599136	235599136	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:235599136C>T	uc001hwz.1	+	9	937	c.814C>T	c.(814-816)CTG>TTG	p.L272L	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Silent_p.L272L|TBCE_uc010pxr.1_Silent_p.L323L|TBCE_uc001hxb.1_Silent_p.L159L	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	272	LRR 5.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			TCAGCTGTATCTGATAGCCCA	0.363000													38	64					0	0	0.006999	0	0
ACTN2	88	broad.mit.edu	37	1	236917271	236917271	+	Missense_Mutation	SNP	G	A	A	rs138452803	byFrequency	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:236917271G>A	uc001hyf.2	+	16	2068	c.1864G>A	c.(1864-1866)GAT>AAT	p.D622N	ACTN2_uc001hyg.2_Missense_Mutation_p.D414N|ACTN2_uc009xgi.1_Missense_Mutation_p.D622N|ACTN2_uc010pxu.1_Missense_Mutation_p.D311N|ACTN2_uc001hyh.2_Missense_Mutation_p.D310N	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	622	Spectrin 3.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			GCCCATCCGCGATCAATCCCT	0.582000													49	78					0	0	0.003610	0	0
ACTN2	88	broad.mit.edu	37	1	236925828	236925829	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:236925828_236925829GG>AA	uc001hyf.2	+	21	2798_2799	c.2594_2595GG>AA	c.(2593-2595)AGG>AAA	p.R865K	ACTN2_uc001hyg.2_Missense_Mutation_p.R657K|ACTN2_uc009xgi.1_Missense_Mutation_p.R865K|ACTN2_uc010pxu.1_Missense_Mutation_p.R554K|ACTN2_uc001hyh.2_Missense_Mutation_p.R553K	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	865					focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TGCATCAAGAGGATGCCCGCCT	0.594000													11	50					0	0	0.004672	0	0
RYR2	6262	broad.mit.edu	37	1	237791188	237791188	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:237791188C>G	uc001hyl.1	+	41	6368	c.6248C>G	c.(6247-6249)GCC>GGC	p.A2083G		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2083	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTGGTGAGGGCCATGTTTGTG	0.547000													11	21					0	0	0.001368	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090463	238090463	+	RNA	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:238090463C>T	uc010pyc.1	+	12		c.1969C>T				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						CTGCCCGAACCCCAAGGCCAA	0.582000													20	15					0	0	0.001882	0	0
OR6F1	343169	broad.mit.edu	37	1	247875240	247875240	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:247875240G>A	uc001idj.1	-	1	818	c.818C>T	c.(817-819)GCT>GTT	p.A273V		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GACGTGGACAGCTTTGATCAG	0.478000													39	57					0	0	0.004878	0	0
OR2L2	26246	broad.mit.edu	37	1	248201713	248201713	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:248201713C>T	uc001idw.2	+	1	240	c.144C>T	c.(142-144)ATC>ATT	p.I48I	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTCTTCTCATCTTTTTGGACA	0.383000													55	237					0	0	0.003610	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285825	248285825	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:248285825G>C	uc001idy.1	+	1	388	c.388G>C	c.(388-390)GTT>CTT	p.V130L		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						ATTTGAAAAGGTTATTTTCAT	0.413000													84	111					0	0	0.003610	0	0
OR2T12	127064	broad.mit.edu	37	1	248458364	248458364	+	Missense_Mutation	SNP	C	T	T	rs146983185		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr1:248458364C>T	uc010pzj.1	-	1	517	c.517G>A	c.(517-519)GAT>AAT	p.D173N		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.D173N(1)		skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			AAGAAGTGATCGATCTCGTGT	0.562000													22	63					0	0	0.001882	0	0
GTPBP4	23560	broad.mit.edu	37	10	1038588	1038588	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:1038588C>T	uc001ift.2	+	2	279	c.208C>T	c.(208-210)CCC>TCC	p.P70S	GTPBP4_uc010qac.1_5'UTR|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_5'UTR|GTPBP4_uc010qae.1_Missense_Mutation_p.P23S	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	70					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		AACAGATTTCCCCAAATTGGA	0.328000													3	13					0	0	0.004672	0	0
C10orf113	387638	broad.mit.edu	37	10	21414812	21414812	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:21414812G>A	uc001iqm.2	-	2	398	c.378C>T	c.(376-378)TTC>TTT	p.F126F	NEBL_uc001iqk.2_Intron	NM_001010896	NP_001010896	Q5VZT2	CJ113_HUMAN	hypothetical protein LOC387638	136										ovary(3)|pancreas(1)	4						TTATGCCCTGGAATTTAAATC	0.433000													19	59					0	0	0.008871	0	0
MYO3A	53904	broad.mit.edu	37	10	26377306	26377306	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:26377306G>A	uc001isn.2	+	15	1894	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K	MYO3A_uc009xko.1_Missense_Mutation_p.E512K|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Missense_Mutation_p.E512K	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	512	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						ATATCTCCTGGAAAAATCCCG	0.343000													10	25					0	0	0.001368	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285354	44285354	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:44285354C>T	uc010qfe.1	-	1	512	c.482G>A	c.(481-483)AGG>AAG	p.R161K		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						TCCACTCTGCCTGTCTTCCAT	0.328000													7	17					0	0	0.003080	0	0
HNRNPA3P1	10151	broad.mit.edu	37	10	44285493	44285493	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:44285493C>T	uc010qfe.1	-	1	373	c.343G>A	c.(343-345)GAT>AAT	p.D115N		NR_002726				SubName: Full=cDNA FLJ52659, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=cDNA, FLJ79333, highly similar to Heterogeneous nuclear ribonucleoprotein A3; SubName: Full=Heterogeneous nuclear ribonucleoprotein A3, isoform CRA_a;												0						TTCACAGAATCCTCTCTAGAA	0.408000													8	25					0	0	0.003080	0	0
C10orf10	11067	broad.mit.edu	37	10	45473421	45473421	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:45473421C>T	uc001jbr.3	-	2	348	c.58G>A	c.(58-60)GAG>AAG	p.E20K	RASSF4_uc001jbo.2_Intron|RASSF4_uc001jbp.2_Intron|RASSF4_uc009xmn.2_Intron|RASSF4_uc001jbq.2_Intron	NM_007021	NP_008952	Q9NTK1	DEPP_HUMAN	fasting-induced protein	20						mitochondrion					0						AGCATCTCCTCCGTGGTCTCC	0.607000													22	80					0	0	0.002780	0	0
RBP3	5949	broad.mit.edu	37	10	48389645	48389645	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:48389645C>T	uc001jez.2	-	1	1347	c.1233G>A	c.(1231-1233)GTG>GTA	p.V411V		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	411	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	ACTCTGGGGCCACCCCTGGTG	0.652000													7	44					0	0	0.001984	0	0
FRMPD2	143162	broad.mit.edu	37	10	49393605	49393605	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:49393605G>A	uc001jgi.2	-	18	2457	c.2350C>T	c.(2350-2352)CGT>TGT	p.R784C	FRMPD2_uc001jgh.2_Missense_Mutation_p.R752C|FRMPD2_uc001jgj.2_Missense_Mutation_p.R762C	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	784	PDZ 1.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		CCAAAACCACGATGTGGGTCA	0.502000													12	66					0	0	0.001368	0	0
JMJD1C	221037	broad.mit.edu	37	10	64949134	64949134	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:64949134G>A	uc001jmn.2	-	18	6664	c.6364C>T	c.(6364-6366)CCA>TCA	p.P2122S	JMJD1C_uc001jml.2_Missense_Mutation_p.P1885S|JMJD1C_uc001jmm.2_Missense_Mutation_p.P1834S|JMJD1C_uc010qiq.1_Missense_Mutation_p.P1940S|JMJD1C_uc009xpi.2_Missense_Mutation_p.P1940S|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmo.2_Missense_Mutation_p.P29S	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	2122					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TTACTTGGTGGAATTTTGTTT	0.318000													10	54					0	0	0.008291	0	0
TET1	80312	broad.mit.edu	37	10	70446317	70446317	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:70446317C>T	uc001jok.3	+	11	5762	c.5257C>T	c.(5257-5259)CGT>TGT	p.R1753C		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1753					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GCCTGTTCCCCGTTCTGGAAA	0.502000													16	46					0	0	0.008871	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72468534	72468534	+	Silent	SNP	C	T	T	rs145552242		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:72468534C>T	uc001jrh.2	+	4	870	c.870C>T	c.(868-870)ATC>ATT	p.I290I	ADAMTS14_uc001jrg.2_Silent_p.I290I	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	290	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						TCATGAATATCGTGAGTGTCC	0.602000													14	53					0	0	0.003163	0	0
EXOC6	54536	broad.mit.edu	37	10	94653221	94653221	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:94653221T>A	uc001kig.2	+	2	283	c.217T>A	c.(217-219)TTT>ATT	p.F73I	EXOC6_uc010qnr.1_Missense_Mutation_p.F89I|EXOC6_uc001kie.2_Missense_Mutation_p.F68I|EXOC6_uc001kif.3_Missense_Mutation_p.F73I|EXOC6_uc009xub.2_Missense_Mutation_p.F73I|EXOC6_uc009xuc.2_Missense_Mutation_p.F73I	NM_019053	NP_061926	Q8TAG9	EXOC6_HUMAN	SEC15-like 1 isoform a	73					protein transport|vesicle docking involved in exocytosis	exocyst				skin(1)	1		Colorectal(252;0.123)				TCATCAGGGTTTTGTAGATGC	0.323000													103	362					0	0	0.003610	0	0
PLCE1	51196	broad.mit.edu	37	10	95791914	95791914	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:95791914C>T	uc001kjk.2	+	2	1745	c.1111C>T	c.(1111-1113)CCC>TCC	p.P371S	PLCE1_uc010qnx.1_Missense_Mutation_p.P371S	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	371					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GAGAAATGGTCCCTTACTGCC	0.488000													10	30					0	0	0.008291	0	0
PLCE1	51196	broad.mit.edu	37	10	95931163	95931163	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:95931163C>T	uc001kjk.2	+	4	2353	c.1719C>T	c.(1717-1719)CCC>CCT	p.P573P	PLCE1_uc010qnx.1_Silent_p.P573P|PLCE1_uc001kjm.2_Silent_p.P265P	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	573	Ras-GEF.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GCTCCTTGCCCTGCCTCAAAG	0.507000													31	79					0	0	0.007291	0	0
SORBS1	10580	broad.mit.edu	37	10	97096734	97096734	+	Silent	SNP	G	C	C	rs117778203	byFrequency	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:97096734G>C	uc001kkp.2	-	28	3228	c.3183C>G	c.(3181-3183)ACC>ACG	p.T1061T	SORBS1_uc001kkk.2_Intron|SORBS1_uc001kkl.2_Intron|SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Intron|SORBS1_uc001kko.2_Intron|SORBS1_uc001kkq.2_Intron|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_Intron|SORBS1_uc001kku.2_Intron|SORBS1_uc001kkv.2_Intron|SORBS1_uc001kkw.2_Silent_p.T1015T|SORBS1_uc010qoe.1_Intron	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1061					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		CTAGGGAGTAGGTTTTGTGTG	0.567000													17	54					0	0	0.008871	0	0
PDZD8	118987	broad.mit.edu	37	10	119042949	119042949	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:119042949C>T	uc001lde.1	-	5	3494	c.3295G>A	c.(3295-3297)GAA>AAA	p.E1099K		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	1099					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TCTATATCTTCAATGCCTGCT	0.358000													11	28					0	0	0.001368	0	0
PWWP2B	170394	broad.mit.edu	37	10	134218848	134218848	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:134218848C>T	uc001lll.3	+	2	873	c.844C>T	c.(844-846)CCC>TCC	p.P282S	PWWP2B_uc009ybe.2_Missense_Mutation_p.P282S	NM_138499	NP_612508	Q6NUJ5	PWP2B_HUMAN	PWWP domain containing 2 isoform 1	282											0		all_cancers(35;6.69e-12)|all_epithelial(44;1.55e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.109)|Melanoma(40;0.123)|Glioma(114;0.203)|all_hematologic(284;0.224)		OV - Ovarian serous cystadenocarcinoma(35;7.49e-05)|Epithelial(32;0.00016)|all cancers(32;0.000186)		GCCCTTCCGTCCCCAGCAGGC	0.706000													11	18					0	0	0.002450	0	0
AP2A2	161	broad.mit.edu	37	11	984647	984647	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:984647C>T	uc001lss.2	+	7	889	c.708C>T	c.(706-708)ATC>ATT	p.I236I	AP2A2_uc001lst.1_Silent_p.I236I|AP2A2_uc009yco.1_RNA	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	236					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		TCTTACAGATCGTGACGTCTG	0.557000													57	65					0	0	0.003610	0	0
OR51B2	79345	broad.mit.edu	37	11	5345263	5345263	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:5345263C>T	uc001mao.1	-	1	320	c.265G>A	c.(265-267)GAG>AAG	p.E89K	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGCTAATCTCCCTGTGATTC	0.493000													44	21					0	0	0.008740	0	0
PSMA1	5682	broad.mit.edu	37	11	14529245	14529245	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:14529245G>A	uc001mlk.2	-	9	838	c.692C>T	c.(691-693)CCA>CTA	p.P231L	PSMA1_uc001mll.2_Missense_Mutation_p.P237L|PSMA1_uc010rcp.1_RNA|PSMA1_uc001mlj.2_Missense_Mutation_p.P206L	NM_002786	NP_002777	P25786	PSA1_HUMAN	proteasome alpha 1 subunit isoform 2	231					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|polysome|proteasome core complex, alpha-subunit complex	protein binding|RNA binding|threonine-type endopeptidase activity			upper_aerodigestive_tract(1)|skin(1)	2						TTCCAGGAATGGAGACACATC	0.363000													46	42					0	0	0.003610	0	0
ABCC8	6833	broad.mit.edu	37	11	17496474	17496474	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:17496474G>A	uc001mnc.2	-	2	375	c.249C>T	c.(247-249)TTC>TTT	p.F83F	ABCC8_uc010rcy.1_Silent_p.F83F	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	83	Helical; Name=2; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	ACACCAGGACGAAGAGCAGCA	0.547000													258	269					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	11	31086035	31086035	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:31086035G>A	uc009yjk.1	-	8	985	c.916C>T	c.(916-918)CCT>TCT	p.P306S	uc009yjl.1_Missense_Mutation_p.P234S|DCDC1_uc001msu.1_Missense_Mutation_p.P477S					RecName: Full=Doublecortin domain-containing protein 5;																		GAAGCCTTAGGATGTTTCTCT	0.453000													67	82					0	0	0.003610	0	0
CCDC73	493860	broad.mit.edu	37	11	32635935	32635935	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:32635935C>T	uc001mtv.2	-	16	1973	c.1929G>A	c.(1927-1929)CAG>CAA	p.Q643Q		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	643										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					AACTATATTTCTGACATGGAA	0.308000													14	18					0	0	0.002450	0	0
ELF5	2001	broad.mit.edu	37	11	34502418	34502418	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:34502418C>T	uc001mvo.1	-	6	832	c.602G>A	c.(601-603)GGA>GAA	p.G201E	ELF5_uc001mvp.1_Missense_Mutation_p.G191E|ELF5_uc009ykd.1_Missense_Mutation_p.G96E	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	201	ETS.				cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				CCGAAAAATTCCTTGTTCCCT	0.443000													49	40					0	0	0.003610	0	0
CKAP5	9793	broad.mit.edu	37	11	46797807	46797807	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:46797807C>T	uc001ndi.1	-	24	3099	c.2989G>A	c.(2989-2991)GAG>AAG	p.E997K	CKAP5_uc009ylg.1_Missense_Mutation_p.E883K|CKAP5_uc001ndj.1_Missense_Mutation_p.E997K	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	997					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						ATACTAACCTCTTGCCTCAAG	0.408000													17	19					0	0	0.006122	0	0
OR4A5	81318	broad.mit.edu	37	11	51411637	51411637	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:51411637G>A	uc001nhi.1	-	1	759	c.759C>T	c.(757-759)TTC>TTT	p.F253F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				TAACATATATGAAAATACAGG	0.393000													19	12					0	0	0.008871	0	0
OR5T2	219464	broad.mit.edu	37	11	56000188	56000188	+	Silent	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:56000188A>G	uc010rjc.1	-	1	474	c.474T>C	c.(472-474)GCT>GCC	p.A158A		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	158	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AGCGATCATAAGCCATTGCAG	0.443000													61	52					0	0	0.003610	0	0
OR8K1	390157	broad.mit.edu	37	11	56113718	56113718	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:56113718C>T	uc010rjg.1	+	1	204	c.204C>T	c.(202-204)TTC>TTT	p.F68F		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TGTACTTTTTCCTTAGACATT	0.408000										HNSCC(65;0.19)			62	44					0	0	0.003610	0	0
OR8K1	390157	broad.mit.edu	37	11	56114096	56114096	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:56114096C>T	uc010rjg.1	+	1	582	c.582C>T	c.(580-582)CTC>CTT	p.L194L		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TGTCCATACTCTGTTCTGACA	0.338000										HNSCC(65;0.19)			51	48					0	0	0.003610	0	0
APLNR	187	broad.mit.edu	37	11	57003509	57003509	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:57003509G>A	uc001njo.2	-	1	1419	c.970C>T	c.(970-972)CTC>TTC	p.L324F	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	324	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						CCACAGCAGAGCATGGAGGTG	0.642000													14	28					0	0	0.002450	0	0
NXF1	10482	broad.mit.edu	37	11	62562463	62562464	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:62562463_62562464CC>TT	uc001nvf.1	-	18	1656_1657	c.1520_1521GG>AA	c.(1519-1521)CGG>CAA	p.R507Q	TMEM223_uc001nve.2_5'Flank|NXF1_uc001nvg.1_3'UTR|NXF1_uc009yog.1_Missense_Mutation_p.R550Q	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	507	NTF2.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						GCAAAGAATCCCGGGACTTTCC	0.436000													31	26					0	0	0.004672	0	0
SIPA1	6494	broad.mit.edu	37	11	65413395	65413395	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:65413395G>A	uc001ofb.2	+	6	1397	c.1230G>A	c.(1228-1230)ACG>ACA	p.T410T	SIPA1_uc010rom.1_Silent_p.T410T|SIPA1_uc001ofd.2_Silent_p.T410T	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	410	Rap-GAP.				cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						ACGTGTCCACGATGCTGCCTT	0.602000													8	1					0	0	0.000978	0	0
PACS1	55690	broad.mit.edu	37	11	66009114	66009114	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:66009114G>C	uc001oha.1	+	22	2780	c.2646G>C	c.(2644-2646)AAG>AAC	p.K882N	PACS1_uc010rou.1_Missense_Mutation_p.K418N	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	882				K -> L (in Ref. 1; AAQ67682).	interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						CCAAAGAAAAGAACAAGAAAG	0.572000													4	80					0	0	0.000248	0	0
LRP5	4041	broad.mit.edu	37	11	68153988	68153988	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:68153988C>G	uc001ont.2	+	6	1295	c.1220C>G	c.(1219-1221)GCG>GGG	p.A407G	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	407	LDL-receptor class B 6.|Beta-propeller 2.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						GGGTCTGGGGCGCAGACGCTG	0.647000													29	17					0	0	0.002096	0	0
MYEOV	26579	broad.mit.edu	37	11	69063157	69063157	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:69063157C>T	uc001oov.2	+	3	690	c.240C>T	c.(238-240)CTC>CTT	p.L80L	MYEOV_uc001oox.2_Intron|MYEOV_uc009ysl.2_Silent_p.L80L|MYEOV_uc001oow.2_Silent_p.L22L	NM_138768	NP_620123	Q96EZ4	MYEOV_HUMAN	myeloma overexpressed	80											0	all_lung(4;2.21e-19)|Lung NSC(4;6.13e-19)|Melanoma(5;0.00128)		LUSC - Lung squamous cell carcinoma(11;3.33e-11)|STAD - Stomach adenocarcinoma(18;0.00654)|LUAD - Lung adenocarcinoma(13;0.0713)	Kidney(183;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.00361)|LUSC - Lung squamous cell carcinoma(976;0.0153)		GGGGCCGCCTCTGTCTCTCCC	0.622000													45	52					0	0	0.002852	0	0
KCTD14	65987	broad.mit.edu	37	11	77728067	77728067	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:77728067C>T	uc001oyw.3	-	2	365	c.340G>A	c.(340-342)GAA>AAA	p.E114K		NM_023930	NP_076419	Q9BQ13	KCD14_HUMAN	potassium channel tetramerisation domain	114	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1e-24)			GGCTTGATTTCGTAGAACTGA	0.562000													13	30					0	0	0.003163	0	0
CNTN5	53942	broad.mit.edu	37	11	99690330	99690330	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:99690330T>G	uc001pga.2	+	4	450	c.111T>G	c.(109-111)ATT>ATG	p.I37M	CNTN5_uc009ywv.1_Missense_Mutation_p.I37M|CNTN5_uc001pfz.2_Missense_Mutation_p.I37M|CNTN5_uc001pgb.2_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	37					cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TGTTAAGAATTAAGAAGAGTT	0.383000													16	79					0	0	0.004990	0	0
MMP13	4322	broad.mit.edu	37	11	102826002	102826002	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:102826002G>T	uc001phl.2	-	2	369	c.341C>A	c.(340-342)TCC>TAC	p.S114Y		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	114					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		ATTCATTTTGGACCATTTAAG	0.358000													19	50					2.94398e-08	3.69026e-08	0.007413	1	0
CARD17	440068	broad.mit.edu	37	11	104971360	104971360	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:104971360C>T	uc001pir.1	-	2	171	c.154G>A	c.(154-156)GAT>AAT	p.D52N	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron	NM_001007232	NP_001007233	Q5XLA6	CAR17_HUMAN	caspase recruitment domain family, member 17	52	CARD.				proteolysis|regulation of apoptosis	cytoplasm	cysteine-type endopeptidase activity|cysteine-type endopeptidase inhibitor activity			ovary(1)	1						CGGGCCTTATCCATAACTGTA	0.443000													38	41					0	0	0.005524	0	0
NCAM1	4684	broad.mit.edu	37	11	113078638	113078638	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr11:113078638T>G	uc009yyq.1	+	7	1170	c.476T>G	c.(475-477)GTG>GGG	p.V159G	NCAM1_uc001pno.2_Missense_Mutation_p.V159G	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	277	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		ATCAAAAAGGTGGATAAGAAC	0.502000													8	3					0	0	0.003080	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662611	662611	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:662611G>T	uc001qii.1	+	14	1522	c.1522G>T	c.(1522-1524)GTG>TTG	p.V508L	B4GALNT3_uc001qij.1_Missense_Mutation_p.V411L|B4GALNT3_uc001qik.1_Missense_Mutation_p.V57L	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	508	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CCACATTCCAGTGCAGCAGCC	0.622000													18	27					6.94344e-10	8.75599e-10	0.006122	1	0
SCNN1A	6337	broad.mit.edu	37	12	6457413	6457413	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:6457413T>A	uc001qnx.2	-	13	1925	c.1636A>T	c.(1636-1638)ACC>TCC	p.T546S	SCNN1A_uc001qnv.2_Missense_Mutation_p.T246S|SCNN1A_uc001qnw.2_Missense_Mutation_p.T605S|SCNN1A_uc010sfb.1_Missense_Mutation_p.T569S	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	546	Helical; (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	GACAGGAGGGTGACCATCTGT	0.592000													17	39					0	0	0.006122	0	0
TAPBPL	55080	broad.mit.edu	37	12	6562851	6562851	+	Silent	SNP	A	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:6562851A>T	uc001qog.3	+	3	772	c.534A>T	c.(532-534)CCA>CCT	p.P178P	LOC678655_uc001qob.2_5'Flank|LOC678655_uc001qoc.2_5'Flank|LOC678655_uc009zel.1_5'Flank|LOC678655_uc009zem.1_5'Flank|LOC678655_uc001qof.2_5'Flank|TAPBPL_uc001qoh.3_Silent_p.P36P|TAPBPL_uc001qoi.1_RNA	NM_018009	NP_060479	Q9BX59	TPSNR_HUMAN	TAP binding protein-like precursor	178	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I	endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane					0						TGAACTTGCCACTGAGCCCCC	0.423000													12	23					0	0	0.001855	0	0
ST8SIA1	6489	broad.mit.edu	37	12	22486958	22486958	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:22486958C>T	uc001rfo.3	-	1	691	c.209G>A	c.(208-210)AGG>AAG	p.R70K	ST8SIA1_uc009zix.2_5'UTR|uc001rfp.1_Intron	NM_003034	NP_003025	Q92185	SIA8A_HUMAN	alpha-2,8-sialyltransferase 1	70	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(3)	3						GGTCTGGTTCCTCCTCCACGC	0.652000													20	45					0	0	0.002780	0	0
YARS2	51067	broad.mit.edu	37	12	32900275	32900275	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:32900275C>T	uc001rli.2	-	5	1363	c.1297G>A	c.(1297-1299)GGA>AGA	p.G433R		NM_001040436	NP_001035526	Q9Y2Z4	SYYM_HUMAN	tyrosyl-tRNA synthetase 2, mitochondrial	433					tyrosyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|RNA binding|tyrosine-tRNA ligase activity				0	Lung NSC(5;2.43e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)				L-Tyrosine(DB00135)	ATGCTGACTCCGCCTTCTGTT	0.348000													21	49					0	0	0.003954	0	0
SYT10	341359	broad.mit.edu	37	12	33579237	33579237	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:33579237T>G	uc001rll.1	-	2	642	c.345A>C	c.(343-345)GAA>GAC	p.E115D	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	115	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTTCCTTAATTTCTTTTTTCT	0.418000													20	84					0	0	0.001882	0	0
SLC38A1	81539	broad.mit.edu	37	12	46622995	46622995	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:46622995C>T	uc001rpa.2	-	5	513	c.255G>A	c.(253-255)ATG>ATA	p.M85I	SLC38A1_uc001rpb.2_Missense_Mutation_p.M85I|SLC38A1_uc001rpc.2_Missense_Mutation_p.M85I|SLC38A1_uc001rpd.2_Missense_Mutation_p.M85I|SLC38A1_uc001rpe.2_Missense_Mutation_p.M85I|SLC38A1_uc010slh.1_Missense_Mutation_p.M58I|SLC38A1_uc009zkj.1_Missense_Mutation_p.M85I	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	85	Helical; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TCCCACTGCCCATAATGGCGT	0.423000													10	22					0	0	0.000978	0	0
LIMA1	51474	broad.mit.edu	37	12	50642531	50642532	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:50642531_50642532CC>TT	uc001rwj.3	-	2	177_178	c.3_4GG>AA	c.(1-6)ATGGAA>ATAAAA	p.1_2ME>IK	LIMA1_uc001rwk.3_Missense_Mutation_p.1_2ME>IK|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	1_2					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						GGAGATGATTCCATCTTGTCTA	0.411000													26	83					0	0	0.004672	0	0
KRT84	3890	broad.mit.edu	37	12	52779191	52779191	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:52779191G>A	uc001sah.1	-	1	227	c.179C>T	c.(178-180)TCG>TTG	p.S60L		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	60	Head.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GGGTGAGTACGATCCAAAGGT	0.582000													11	55					0	0	0.000978	0	0
KRT6B	3854	broad.mit.edu	37	12	52845395	52845395	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:52845395G>A	uc001sak.2	-	1	516	c.468C>T	c.(466-468)ATC>ATT	p.I156I		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	156	Head.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		GCACCCGCTGGATGGCGGGGT	0.617000													11	74					0	0	0.001523	0	0
KRT2	3849	broad.mit.edu	37	12	53042059	53042059	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:53042059G>A	uc001sat.2	-	5	1053	c.1020C>T	c.(1018-1020)AGC>AGT	p.S340S		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	340	Linker 12.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		CCAGGTTGCGGCTGTTGTCCA	0.547000													33	117					0	0	0.002836	0	0
KRT3	3850	broad.mit.edu	37	12	53186124	53186124	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:53186124G>A	uc001say.2	-	5	1153	c.1087C>T	c.(1087-1089)CGC>TGC	p.R363C		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	363	Rod.|Linker 12.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						TCCAGGGAGCGATTATTGTCC	0.522000													11	29					0	0	0.001368	0	0
ESPL1	9700	broad.mit.edu	37	12	53670519	53670519	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:53670519A>G	uc001sck.2	+	8	1907	c.1816A>G	c.(1816-1818)ATC>GTC	p.I606V	ESPL1_uc001scj.2_Missense_Mutation_p.I281V|ESPL1_uc010soe.1_5'Flank	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	606					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						ACGCTTCAACATCATCTGTGA	0.662000													7	54					0	0	0.001984	0	0
ATF7	11016	broad.mit.edu	37	12	53918499	53918499	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:53918499C>T	uc001sdy.2	-	9	1028	c.1007G>A	c.(1006-1008)CGC>CAC	p.R336H	ATF7_uc010sok.1_RNA|ATF7_uc001sdz.2_Missense_Mutation_p.R325H|ATF7_uc010sol.1_Missense_Mutation_p.R304H	NM_001130059	NP_001123531	P17544	ATF7_HUMAN	activating transcription factor 7 isoform 1	336	Essential for binding adenovirus 2 E1A.				interspecies interaction between organisms	cytoplasm|nuclear periphery|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						ATCTACTGTGCGCCGCCGTCG	0.602000													7	17					0	0	0.001984	0	0
OR6C4	341418	broad.mit.edu	37	12	55945560	55945560	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:55945560G>A	uc010spp.1	+	1	550	c.550G>A	c.(550-552)GAG>AAG	p.E184K		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCCTCTCGTGGAGCTTGCCTG	0.473000													25	77					0	0	0.004656	0	0
CDK4	1019	broad.mit.edu	37	12	58145436	58145436	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:58145436T>A	uc001spv.2	-	2	292	c.65A>T	c.(64-66)AAG>ATG	p.K22M	CDK4_uc010ssb.1_Translation_Start_Site|CDK4_uc001spw.2_RNA|uc010ssc.1_RNA	NM_000075	NP_000066	P11802	CDK4_HUMAN	cyclin-dependent kinase 4	22	Protein kinase.				cell division|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|positive regulation of fibroblast proliferation|regulation of gene expression|response to drug|S phase of mitotic cell cycle	cyclin-dependent protein kinase holoenzyme complex|cytosol|membrane	ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)|breast(1)|central_nervous_system(1)	3	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			ATCACGGGCCTTGTACACTGT	0.557000			Mis			melanoma 			Hereditary_Melanoma				10	50					0	0	0.008291	0	0
MYF6	4618	broad.mit.edu	37	12	81101829	81101829	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:81101829G>A	uc001szf.1	+	1	384	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	111	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						GAAAATCAACGAGGCCTTCGA	0.582000													9	42					0	0	0.006214	0	0
LTA4H	4048	broad.mit.edu	37	12	96415987	96415987	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:96415987G>A	uc001ten.1	-	5	591	c.523C>T	c.(523-525)CGT>TGT	p.R175C	LTA4H_uc010suy.1_Missense_Mutation_p.R137C|LTA4H_uc010suz.1_Missense_Mutation_p.R137C|LTA4H_uc010sva.1_RNA	NM_000895	NP_000886	P09960	LKHA4_HUMAN	leukotriene A4 hydrolase	175					hormone biosynthetic process|inflammatory response|leukotriene biosynthetic process|peptide catabolic process|prostanoid metabolic process|proteolysis	cytosol|nucleus	aminopeptidase activity|epoxide hydrolase activity|leukotriene-A4 hydrolase activity|metallopeptidase activity|protein binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(1)	1						TCTCCATCACGAATAGCACTC	0.378000													8	25					0	0	0.000978	0	0
STAB2	55576	broad.mit.edu	37	12	104138991	104138991	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:104138991C>T	uc001tjw.2	+	57	6258	c.6072C>T	c.(6070-6072)ATC>ATT	p.I2024I	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2024	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ATGATGGCATCACGGGCTCCG	0.592000													14	54					0	0	0.001855	0	0
KIAA1033	23325	broad.mit.edu	37	12	105534683	105534683	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:105534683G>A	uc001tld.2	+	17	1654	c.1567G>A	c.(1567-1569)GTG>ATG	p.V523M	KIAA1033_uc010swr.1_Missense_Mutation_p.V524M|KIAA1033_uc010sws.1_Missense_Mutation_p.V335M	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	523					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						TAAGAAAAGAGTGATTTCTGA	0.358000													11	49					0	0	0.000978	0	0
SSH1	54434	broad.mit.edu	37	12	109182215	109182215	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:109182215G>A	uc001tnm.2	-	15	2786	c.2699C>T	c.(2698-2700)CCT>CTT	p.P900L	SSH1_uc001tnl.2_Missense_Mutation_p.P588L	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	900	Interaction with YWHAG.				actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						GTAGAAGAAAGGAGGGGGGCT	0.587000													12	54					0	0	0.001368	0	0
CUX2	23316	broad.mit.edu	37	12	111749989	111749989	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:111749989C>T	uc001tsa.1	+	16	2139	c.1986C>T	c.(1984-1986)ATC>ATT	p.I662I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	662						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AGAAGGAGATCGAGTCGCAGA	0.612000													4	10					0	0	0.000248	0	0
ACAD10	80724	broad.mit.edu	37	12	112150374	112150374	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:112150374A>G	uc001tsq.2	+	6	963	c.763A>G	c.(763-765)AAC>GAC	p.N255D	ACAD10_uc001tso.3_Missense_Mutation_p.N255D|ACAD10_uc001tsp.2_Missense_Mutation_p.N255D|ACAD10_uc009zvx.2_Missense_Mutation_p.N286D|ACAD10_uc001tsr.2_5'UTR|ACAD10_uc001tss.1_5'Flank	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	255							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						AGGTGTTCCAAACACTCGGCC	0.433000													3	156					0	0	0.004672	0	0
KSR2	283455	broad.mit.edu	37	12	118199237	118199237	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:118199237G>A	uc001two.2	-	4	533	c.478C>T	c.(478-480)CCG>TCG	p.P160S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	189	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity	p.C160C(1)		lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGGATCCACGGGGTGGGCTCC	0.637000													31	50					0	0	0.002836	0	0
NCOR2	9612	broad.mit.edu	37	12	124856641	124856641	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:124856641G>A	uc010tba.1	-	20	2851	c.2734C>T	c.(2734-2736)CCC>TCC	p.P912S	NCOR2_uc010tay.1_Missense_Mutation_p.P912S|NCOR2_uc010taz.1_Missense_Mutation_p.P895S|NCOR2_uc010tbb.1_Missense_Mutation_p.P912S|NCOR2_uc010tbc.1_Missense_Mutation_p.P894S|NCOR2_uc001ugj.1_Missense_Mutation_p.P912S	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	912					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CTGTCCTGGGGGGCGCCCGAG	0.711000													8	43					0	0	0.001855	0	0
GPR133	283383	broad.mit.edu	37	12	131498747	131498747	+	Silent	SNP	C	T	T	rs144882598	byFrequency	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr12:131498747C>T	uc001uit.3	+	13	1894	c.1335C>T	c.(1333-1335)ATC>ATT	p.I445I	GPR133_uc010tbm.1_Silent_p.I477I	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	445	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		TCCCAAGGATCGCGGAGGCCA	0.577000													9	39					0	0	0.008291	0	0
XPO4	64328	broad.mit.edu	37	13	21371181	21371181	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr13:21371181G>A	uc001unq.3	-	17	2374	c.2338C>T	c.(2338-2340)CAG>TAG	p.Q780*		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	780					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		AATCGCTGCTGAAGTGGCTGA	0.408000													8	28					0	0	0.004482	0	0
SACS	26278	broad.mit.edu	37	13	23913792	23913792	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr13:23913792A>G	uc001uon.2	-	10	4812	c.4223T>C	c.(4222-4224)CTT>CCT	p.L1408P	SACS_uc001uoo.2_Missense_Mutation_p.L1261P|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1408					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TAAGTCATTAAGGTCATCAAC	0.378000													17	45					0	0	0.004990	0	0
PAN3	255967	broad.mit.edu	37	13	28748517	28748517	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr13:28748517A>T	uc001urz.2	+	1	109	c.101A>T	c.(100-102)TAT>TTT	p.Y34F	PAN3_uc010tdo.1_Missense_Mutation_p.Y180F|PAN3_uc001ury.2_5'UTR|PAN3_uc001urx.2_Missense_Mutation_p.Y34F	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	180	Interaction with polyadenylate-binding protein.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		GAAACAAAATATCCCCTGATG	0.373000													5	27					0	0	0.001168	0	0
FREM2	341640	broad.mit.edu	37	13	39262764	39262764	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr13:39262764T>A	uc001uwv.2	+	1	1592	c.1283T>A	c.(1282-1284)ATG>AAG	p.M428K		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	428	Extracellular (Potential).|CSPG 2.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TTTGCCTTCATGGTAGTGGTG	0.547000													21	47					0	0	0.001882	0	0
CAB39L	81617	broad.mit.edu	37	13	49924970	49924970	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr13:49924970G>A	uc001vcw.2	-	5	972	c.474C>T	c.(472-474)ATC>ATT	p.I158I	CAB39L_uc001vcx.2_Silent_p.I158I|CAB39L_uc010adf.2_Silent_p.I155I	NM_030925	NP_112187	Q9H9S4	CB39L_HUMAN	calcium binding protein 39-like	158					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	protein binding				0		Lung NSC(96;2.11e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.66e-09)|COAD - Colon adenocarcinoma(199;0.226)		AAAAGAGGATGATTTTGGCAA	0.368000													14	45					0	0	0.003163	0	0
MDGA2	161357	broad.mit.edu	37	14	47351265	47351265	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:47351265G>A	uc001wwj.3	-	11	2387	c.2191C>T	c.(2191-2193)CGT>TGT	p.R731C	MDGA2_uc001wwh.3_5'UTR|MDGA2_uc001wwi.3_Missense_Mutation_p.R502C|MDGA2_uc010ani.2_Missense_Mutation_p.R291C	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	731					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						TTGATCACACGAATTGTTGAA	0.299000													4	8					0	0	0.000248	0	0
PLEKHH1	57475	broad.mit.edu	37	14	68029190	68029191	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:68029190_68029191CC>TT	uc001xjl.1	+	7	984_985	c.842_843CC>TT	c.(841-843)TCC>TTT	p.S281F		NM_020715	NP_065766	Q9ULM0	PKHH1_HUMAN	pleckstrin homology domain containing, family H	281						cytoskeleton	binding				0				all cancers(60;0.000771)|OV - Ovarian serous cystadenocarcinoma(108;0.00502)|BRCA - Breast invasive adenocarcinoma(234;0.011)		AGTTCAGCTTCCTGGGGTGAGG	0.564000													6	18					0	0	0.004672	0	0
SERPINA4	5267	broad.mit.edu	37	14	95033392	95033392	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:95033392G>A	uc001ydk.2	+	3	801	c.735G>A	c.(733-735)ATG>ATA	p.M245I	SERPINA4_uc010avd.2_Missense_Mutation_p.M282I|SERPINA4_uc001ydl.2_Missense_Mutation_p.M245I	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	245					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		GGGTGCCCATGATGCTGCAGG	0.498000													14	48					0	0	0.001855	0	0
ADAM6	8755	broad.mit.edu	37	14	106091440	106091440	+	RNA	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:106091440C>T	uc010tyt.1	-	3647		c.62068G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						AACTGGACCTCGGGGTCTTCC	0.587000													29	38					0	0	0.001786	0	0
ADAM6	8755	broad.mit.edu	37	14	106208091	106208091	+	RNA	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:106208091G>T	uc010tyt.1	-	3628		c.59026C>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Silent_p.R104R|uc001ysf.2_Silent_p.R104R					Parts of antibodies, mostly variable regions.												0						AGCTCATCCCGGGATGGGGGC	0.642000													4	114					0.00198382	0.00244282	0.001984	1	0
ADAM6	8755	broad.mit.edu	37	14	107062278	107062278	+	RNA	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:107062278C>T	uc010tyt.1	-	131		c.6317G>A								Parts of antibodies, mostly variable regions.												0						TTTCCCCAATCCACTCCAGCC	0.567000													21	37					0	0	0.001523	0	0
ADAM6	8755	broad.mit.edu	37	14	107170333	107170333	+	RNA	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:107170333G>T	uc010tyt.1	-	37		c.2536C>A								Parts of antibodies, mostly variable regions.												0						TGTAGCTGCTGCCACCACAAA	0.522000													5	43					2.7689e-08	3.47773e-08	0.001984	1	0
GABRB3	2562	broad.mit.edu	37	15	26792988	26792988	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:26792988G>A	uc001zaz.2	-	9	1516	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F	GABRB3_uc010uae.1_Silent_p.F373F|GABRB3_uc001zba.2_Silent_p.F458F|GABRB3_uc001zbb.2_Silent_p.F514F	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	458	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GAGAAAAAGTGAATGGAAACA	0.373000													13	44					0	0	0.001855	0	0
RYR3	6263	broad.mit.edu	37	15	33927852	33927852	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:33927852C>T	uc001zhi.2	+	26	3283	c.3213C>T	c.(3211-3213)ATC>ATT	p.I1071I	RYR3_uc010bar.2_Silent_p.I1071I	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1071	B30.2/SPRY 2.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TAGACAAGATCCGATTTTTCC	0.493000													8	19					0	0	0.004482	0	0
RYR3	6263	broad.mit.edu	37	15	33954696	33954696	+	Silent	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:33954696G>T	uc001zhi.2	+	35	5035	c.4965G>T	c.(4963-4965)GTG>GTT	p.V1655V	RYR3_uc010bar.2_Silent_p.V1655V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1655	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGCCTGGGGTGGGCCTGAGAA	0.557000													11	42					0.000978159	0.00120684	0.000978	1	0
ATPBD4	89978	broad.mit.edu	37	15	35830567	35830567	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:35830567T>C	uc001zja.2	-	3	282	c.220A>G	c.(220-222)ATA>GTA	p.I74V	ATPBD4_uc001ziz.2_Missense_Mutation_p.I58V|ATPBD4_uc001zjb.2_Missense_Mutation_p.I74V	NM_080650	NP_542381	Q7L8W6	ATBD4_HUMAN	ATP binding domain 4 isoform 1	74											0		all_epithelial(112;2.11e-09)|Lung NSC(122;2.38e-08)|all_lung(180;3.65e-07)		all cancers(64;9.9e-19)|GBM - Glioblastoma multiforme(113;2.01e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)		CTTCCTCTTATGGTTCGGCGA	0.458000													28	91					0	0	0.004656	0	0
C15orf53	400359	broad.mit.edu	37	15	38990376	38990376	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:38990376C>T	uc001zkf.1	+	2	180	c.170C>T	c.(169-171)ACC>ATC	p.T57I		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	57											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		gaacatctaacccagggccac	0.149000													9	28					0	0	0.004482	0	0
ZFP106	64397	broad.mit.edu	37	15	42743290	42743290	+	Nonsense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:42743290T>A	uc001zpw.2	-	2	1446	c.1111A>T	c.(1111-1113)AAG>TAG	p.K371*	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Nonsense_Mutation_p.K154*|ZFP106_uc001zpy.1_Nonsense_Mutation_p.K394*	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	371						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		ATTTCTGACTTGTTACCAGTG	0.453000													22	71					0	0	0.002299	0	0
TRPM7	54822	broad.mit.edu	37	15	50884498	50884498	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:50884498G>A	uc001zyt.3	-	26	4198	c.3934C>T	c.(3934-3936)CCT>TCT	p.P1312S	TRPM7_uc010bew.1_Missense_Mutation_p.P1312S	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1312	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		CAATGAAAAGGATTATTACTT	0.343000													14	44					0	0	0.001855	0	0
UNC13C	440279	broad.mit.edu	37	15	54307569	54307569	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:54307569G>A	uc002ack.2	+	1	2469	c.2469G>A	c.(2467-2469)GAG>GAA	p.E823E		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	823					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTGGGTATGAGGACAGTGGCT	0.448000													4	44					0	0	0.000602	0	0
TCF12	6938	broad.mit.edu	37	15	57535737	57535737	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:57535737C>T	uc002aec.2	+	13	1387	c.1103C>T	c.(1102-1104)TCA>TTA	p.S368L	TCF12_uc010ugm.1_Missense_Mutation_p.S420L|TCF12_uc010ugn.1_Missense_Mutation_p.S364L|TCF12_uc002aea.2_Missense_Mutation_p.S368L|TCF12_uc010bfs.2_Intron|TCF12_uc002aeb.2_Missense_Mutation_p.S368L|TCF12_uc002aed.2_Missense_Mutation_p.S368L|TCF12_uc002aee.2_Missense_Mutation_p.S198L|TCF12_uc010bft.2_Missense_Mutation_p.S198L|TCF12_uc010ugo.1_Missense_Mutation_p.S132L	NM_207038	NP_996921	Q99081	HTF4_HUMAN	transcription factor 12 isoform b	368					immune response|muscle organ development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(2)|lung(1)	8		Colorectal(260;0.0907)		all cancers(107;0.000313)|GBM - Glioblastoma multiforme(80;0.00878)|STAD - Stomach adenocarcinoma(283;0.239)		GGATCACCTTCACCTCTCACA	0.348000			T	TEC	extraskeletal myxoid chondrosarcoma								19	53					0	0	0.001523	0	0
IQCH	64799	broad.mit.edu	37	15	67629324	67629324	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:67629324G>A	uc002aqo.1	+	5	446	c.399G>A	c.(397-399)TCG>TCA	p.S133S	IQCH_uc010ujv.1_Intron|IQCH_uc002aqn.1_Intron|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	133										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		TAAAGGTTTCGAAGTTAATCA	0.343000													15	41					0	0	0.003163	0	0
CT62	196993	broad.mit.edu	37	15	71403594	71403594	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:71403594C>G	uc002ata.2	-	4	820	c.307G>C	c.(307-309)GGG>CGG	p.G103R		NM_001102658	NP_001096128	P0C5K7	CT62_HUMAN	cancer/testis antigen 62	103											0						TGAAGACTCCCTGACACTTCA	0.488000													11	40					0	0	0.001368	0	0
DET1	55070	broad.mit.edu	37	15	89073862	89073862	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:89073862G>A	uc002bmr.2	-	2	1227	c.1075C>T	c.(1075-1077)CCA>TCA	p.P359S	DET1_uc002bmp.3_RNA|DET1_uc010bnk.2_RNA|DET1_uc002bmq.2_Missense_Mutation_p.P370S	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	359						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			ACCTGTGATGGATCTGTGACT	0.448000													24	61					0	0	0.004656	0	0
SV2B	9899	broad.mit.edu	37	15	91769874	91769874	+	Silent	SNP	C	T	T	rs148654261		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr15:91769874C>T	uc002bqv.2	+	1	772	c.381C>T	c.(379-381)TTC>TTT	p.F127F	SV2B_uc002bqt.2_Silent_p.F127F|SV2B_uc010uqv.1_Intron|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	127	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			TGGAAGTGTTCGTGGTGAGTT	0.512000													207	456					0	0	0.003610	0	0
C16orf59	80178	broad.mit.edu	37	16	2512222	2512222	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:2512222C>T	uc002cqh.2	+	6	763	c.732C>T	c.(730-732)CTC>CTT	p.L244L	C16orf59_uc002cqf.1_Silent_p.L244L|C16orf59_uc002cqg.1_Silent_p.L77L|C16orf59_uc002cqi.2_Silent_p.L77L|C16orf59_uc010uwb.1_Silent_p.L77L	NM_025108	NP_079384	Q7L2K0	CP059_HUMAN	hypothetical protein LOC80178	244											0		Ovarian(90;0.17)				CCCAGTTCCTCCAGAACATGC	0.627000													14	45					0	0	0.003163	0	0
BTBD12	84464	broad.mit.edu	37	16	3632685	3632685	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:3632685G>A	uc002cvp.2	-	15	5790	c.5163C>T	c.(5161-5163)TCC>TCT	p.S1721S		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1721	Poly-Ser.|Interaction with PLK1 and TERF2-TERF2IP.|Interaction with SLX1.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CAAACTCACAGGAGGAAGAAC	0.592000								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				3	19					0	0	0.004672	0	0
GRIN2A	2903	broad.mit.edu	37	16	9916194	9916194	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:9916194G>A	uc002czo.3	-	10	2643	c.2095C>T	c.(2095-2097)CCC>TCC	p.P699S	GRIN2A_uc010uym.1_Missense_Mutation_p.P699S|GRIN2A_uc010uyn.1_Missense_Mutation_p.P542S|GRIN2A_uc002czr.3_Missense_Mutation_p.P699S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	699	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGCATGTAGGGATAGTTATTC	0.433000													19	58					0	0	0.007413	0	0
GPR139	124274	broad.mit.edu	37	16	20043470	20043470	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:20043470G>A	uc002dgu.1	-	2	811	c.649C>T	c.(649-651)CGT>TGT	p.R217C	GPR139_uc010vaw.1_Missense_Mutation_p.R124C	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	217	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						CCACGGAGACGAAAATTGCTC	0.507000													17	39					0	0	0.004007	0	0
ITGAM	3684	broad.mit.edu	37	16	31332564	31332564	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:31332564G>A	uc002ebq.2	+	15	1808	c.1710G>A	c.(1708-1710)CGG>CGA	p.R570R	ITGAM_uc002ebr.2_Silent_p.R571R|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_5'UTR|ITGAM_uc002ebs.1_5'UTR	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	570	Extracellular (Potential).|FG-GAP 7.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						ACCCTCAGCGGATAGCAGGCT	0.522000													41	138					0	0	0.003610	0	0
SALL1	6299	broad.mit.edu	37	16	51173898	51173898	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:51173898C>T	uc010vgs.1	-	2	2266	c.2235G>A	c.(2233-2235)ACG>ACA	p.T745T	SALL1_uc010vgr.1_Silent_p.T648T|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	745	C2H2-type 4.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GATTCCCTTTCGTGGTGAAAG	0.547000													13	28					0	0	0.001368	0	0
EDC4	23644	broad.mit.edu	37	16	67913992	67913992	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:67913992C>T	uc002eur.2	+	17	2136	c.1970C>T	c.(1969-1971)CCC>CTC	p.P657L	EDC4_uc010cer.2_Missense_Mutation_p.P276L|EDC4_uc010vkg.1_Missense_Mutation_p.P589L|EDC4_uc002eus.2_Missense_Mutation_p.P387L|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	657	Ser-rich.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		ACCTTGAGCCCCAAGCTGCAG	0.652000													4	32					0	0	0.000602	0	0
CHST4	10164	broad.mit.edu	37	16	71571651	71571651	+	Silent	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:71571651G>T	uc002fan.2	+	2	1252	c.1071G>T	c.(1069-1071)CTG>CTT	p.L357L	CHST4_uc002fao.2_Silent_p.L357L	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	357	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						TGAATTTGCTGGGCTACCGCC	0.517000											OREG0023923	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	49					1.58986e-06	1.9771e-06	0.008291	1	0
CNTNAP4	85445	broad.mit.edu	37	16	76528908	76528908	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:76528908G>A	uc002feu.1	+	16	2567	c.2182G>A	c.(2182-2184)GGA>AGA	p.G728R	CNTNAP4_uc002fev.1_Missense_Mutation_p.G592R|CNTNAP4_uc010chb.1_Missense_Mutation_p.G655R|CNTNAP4_uc002fex.1_Missense_Mutation_p.G731R|CNTNAP4_uc002few.2_Missense_Mutation_p.G703R	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	728	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGGATTAGAGGGAAACTGCAT	0.403000													24	83					0	0	0.003954	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76569509	76569509	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:76569509C>T	uc002feu.1	+	20	3208	c.2823C>T	c.(2821-2823)ACC>ACT	p.T941T	CNTNAP4_uc002fev.1_Silent_p.T805T|CNTNAP4_uc010chb.1_Silent_p.T868T|CNTNAP4_uc002fex.1_Silent_p.T944T	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	941	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						ATGGGATGACCCTGGATTTGG	0.507000													14	48					0	0	0.004990	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76572111	76572111	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:76572111C>T	uc002feu.1	+	21	3479	c.3094C>T	c.(3094-3096)CAT>TAT	p.H1032Y	CNTNAP4_uc002fev.1_Missense_Mutation_p.H896Y|CNTNAP4_uc010chb.1_Missense_Mutation_p.H959Y|CNTNAP4_uc002fex.1_Missense_Mutation_p.H1035Y	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1032	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGCTTCATTTCATGGTGATAT	0.368000													12	46					0	0	0.000978	0	0
GAN	8139	broad.mit.edu	37	16	81411074	81411074	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:81411074A>C	uc002fgo.2	+	11	1815	c.1667A>C	c.(1666-1668)CAC>CCC	p.H556P		NM_022041	NP_071324	Q9H2C0	GAN_HUMAN	gigaxonin	556	Kelch 6.				cell death	cytoplasm|neurofilament	protein binding			ovary(2)	2		Colorectal(91;0.153)				ACCTGGCACCACACTAAACCA	0.488000													36	113					0	0	0.004878	0	0
HSD17B2	3294	broad.mit.edu	37	16	82101883	82101883	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:82101883G>A	uc002fgv.2	+	2	546	c.374G>A	c.(373-375)CGA>CAA	p.R125Q		NM_002153	NP_002144	P37059	DHB2_HUMAN	hydroxysteroid (17-beta) dehydrogenase 2	125					response to retinoic acid|steroid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|binding|estradiol 17-beta-dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			ovary(1)|central_nervous_system(1)	2					NADH(DB00157)	GAGGAATTGCGAAGAACCTGC	0.527000													10	38					0	0	0.008291	0	0
C16orf7	9605	broad.mit.edu	37	16	89777064	89777064	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr16:89777064G>A	uc002fom.1	-	10	1313	c.1188C>T	c.(1186-1188)GGC>GGT	p.G396G	C16orf7_uc002fol.1_Silent_p.G326G|uc002fon.1_5'Flank	NM_004913	NP_004904	Q9Y2B5	CP007_HUMAN	chromosome 16 open reading frame 7	396					ATP synthesis coupled proton transport		GTPase activator activity|transporter activity				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		GTACCCCACGGCCCCGGCCCT	0.682000													8	11					0	0	0.004482	0	0
OR1D2	4991	broad.mit.edu	37	17	2995981	2995982	+	Silent	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:2995981_2995982GG>AA	uc010vrb.1	-	1	309_310	c.309_310CC>TT	c.(307-312)TTCCTG>TTTTTG	p.103_104FL>FL		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	103_104	Helical; Name=3; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						AAGGAGACCAGGAAGTAGAGCT	0.545000													69	75					0	0	0.004672	0	0
ARRB2	409	broad.mit.edu	37	17	4624283	4624283	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:4624283G>A	uc002fyj.2	+	15	1407	c.1179G>A	c.(1177-1179)CGG>CGA	p.R393R	ARRB2_uc002fyk.2_Silent_p.R378R|ARRB2_uc002fyl.2_Silent_p.R405R|ARRB2_uc010vsg.1_Silent_p.R414R|ARRB2_uc002fym.2_Silent_p.R390R|ARRB2_uc002fyn.2_Silent_p.R201R|ARRB2_uc010ckq.2_Silent_p.R201R|ARRB2_uc002fyo.2_Silent_p.R201R	NM_004313	NP_004304	P32121	ARRB2_HUMAN	arrestin, beta 2 isoform 1	393	Interaction with AP2B1.|[DE]-X(1,2)-F-X-X-[FL]-X-X-X-R motif.|Interaction with TRAF6.				cell chemotaxis|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|G-protein coupled receptor internalization|negative regulation of natural killer cell mediated cytotoxicity|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|transcription from RNA polymerase II promoter|transforming growth factor beta receptor signaling pathway	coated pit|cytoplasmic membrane-bounded vesicle|cytosol|nucleus|plasma membrane	angiotensin receptor binding|ubiquitin protein ligase binding				0						ACTTTGCCCGGCTTCGGCTGA	0.562000													58	64					0	0	0.003610	0	0
SPEM1	374768	broad.mit.edu	37	17	7324662	7324662	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:7324662G>A	uc002ggv.2	+	3	693	c.668G>A	c.(667-669)GGG>GAG	p.G223E	FGF11_uc010vtw.1_Intron	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	223					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				AAGAACGGTGGGGAGGGGGCG	0.642000													18	22					0	0	0.008871	0	0
TP53	7157	broad.mit.edu	37	17	7578196	7578196	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:7578196A>C	uc002gim.2	-	6	847	c.653T>G	c.(652-654)GTG>GGG	p.V218G	TP53_uc002gig.1_Missense_Mutation_p.V218G|TP53_uc002gih.2_Missense_Mutation_p.V218G|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V86G|TP53_uc010cng.1_Missense_Mutation_p.V86G|TP53_uc002gii.1_Missense_Mutation_p.V86G|TP53_uc010cnh.1_Missense_Mutation_p.V218G|TP53_uc010cni.1_Missense_Mutation_p.V218G|TP53_uc002gij.2_Missense_Mutation_p.V218G|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.V125G|TP53_uc002gio.2_Missense_Mutation_p.V86G|TP53_uc010vug.1_Missense_Mutation_p.V179G	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	218	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		V -> A (in sporadic cancers; somatic mutation).|V -> M (in sporadic cancers; somatic mutation).|V -> G (in sporadic cancers; somatic mutation).|V -> L (in sporadic cancers; somatic mutation).|V -> E (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.V218E(8)|p.V218M(7)|p.0?(7)|p.V218G(5)|p.V218del(5)|p.V218A(3)|p.D208fs*1(1)|p.V216fs*28(1)|p.V218fs*26(1)|p.?(1)|p.S215_V218>R(1)|p.T211fs*28(1)|p.V218_P219insX(1)|p.V218L(1)|p.V218V(1)|p.V218_E224delVPYEPPE(1)|p.V218_E221delVPYE(1)|p.K164_P219del(1)|p.S215fs*27(1)|p.V218_Y220delVPY(1)|p.V216_Y220delVVVPY(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CTCATAGGGCACCACCACACT	0.552000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			10	10					0	0	0.001368	0	0
DNAH2	146754	broad.mit.edu	37	17	7710634	7710634	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:7710634G>A	uc002giu.1	+	61	9623	c.9609G>A	c.(9607-9609)ATG>ATA	p.M3203I	DNAH2_uc010cnm.1_Missense_Mutation_p.M141I	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3203	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGCGGGCCATGGAGGTAAAGG	0.667000													33	39					0	0	0.002836	0	0
ELAC2	60528	broad.mit.edu	37	17	12903502	12903502	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:12903502C>T	uc002gnz.3	-	15	1489	c.1394G>A	c.(1393-1395)AGG>AAG	p.R465K	ELAC2_uc002gnu.3_5'UTR|ELAC2_uc002gnv.3_Missense_Mutation_p.R93K|ELAC2_uc002gnw.3_Missense_Mutation_p.R123K|ELAC2_uc002gnx.3_Missense_Mutation_p.R225K|ELAC2_uc010vvo.1_Missense_Mutation_p.R263K|ELAC2_uc010vvp.1_Missense_Mutation_p.R446K|ELAC2_uc010vvq.1_Missense_Mutation_p.R464K|ELAC2_uc010vvr.1_Missense_Mutation_p.R425K	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	465					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						CTGCGCACTCCTCCTGTACTC	0.567000									Hereditary_Prostate_Cancer				23	19					0	0	0.002299	0	0
NF1	4763	broad.mit.edu	37	17	29557909	29557909	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:29557909C>T	uc002hgg.2	+	24	3496	c.3163C>T	c.(3163-3165)CAA>TAA	p.Q1055*	NF1_uc002hgh.2_Nonsense_Mutation_p.Q1055*|NF1_uc010csn.1_Nonsense_Mutation_p.Q915*|NF1_uc002hgi.1_Nonsense_Mutation_p.Q88*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1055					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AACATCAAACCAAGCAGCAGA	0.353000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			3	8					0	0	0.004672	0	0
FNDC8	54752	broad.mit.edu	37	17	33454267	33454268	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:33454267_33454268CC>TG	uc002hix.2	+	2	498_499	c.416_417CC>TG	c.(415-417)CCC>CTG	p.P139L		NM_017559	NP_060029	Q8TC99	FNDC8_HUMAN	fibronectin type III domain containing 8	139										ovary(2)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.022)		GCGCTCGGCCCCTGCCCATGCC	0.569000													71	64					0	0	0.004672	0	0
NBR1	4077	broad.mit.edu	37	17	41345540	41345540	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:41345540C>T	uc010czd.2	+	12	1549	c.1409C>T	c.(1408-1410)CCT>CTT	p.P470L	NBR1_uc010diz.2_Missense_Mutation_p.P470L|NBR1_uc010whu.1_Missense_Mutation_p.P470L|NBR1_uc010whv.1_Missense_Mutation_p.P470L|NBR1_uc010whw.1_Missense_Mutation_p.P449L|NBR1_uc010whx.1_Missense_Mutation_p.P279L	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	470					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		CAATTTGGGCCTCGGGTCTGG	0.502000													14	9					0	0	0.003163	0	0
ATXN7L3	56970	broad.mit.edu	37	17	42274653	42274653	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:42274653G>A	uc002iga.2	-	3	390	c.299C>T	c.(298-300)CCC>CTC	p.P100L	ATXN7L3_uc010wiv.1_5'Flank|ATXN7L3_uc002ifz.2_Missense_Mutation_p.P100L	NM_001098833	NP_001092303	Q14CW9	AT7L3_HUMAN	ataxin 7-like 3 isoform b	100	SGF11-type.				histone deubiquitination|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|metal ion binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CTCCAGATGGGGAGCAAAGCG	0.597000													27	99					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	17	45127325	45127325	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:45127325C>T	uc010wkj.1	+	2	877	c.523C>T	c.(523-525)CGC>TGC	p.R175C	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		TCACAAAACTCGCTCCCGCAT	0.408000													82	394					0	0	0.003610	0	0
INTS2	57508	broad.mit.edu	37	17	59968899	59968899	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:59968899A>G	uc002izn.2	-	14	1950	c.1874T>C	c.(1873-1875)CTC>CCC	p.L625P	INTS2_uc002izm.2_Missense_Mutation_p.L617P	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	625					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						GAAAATATTGAGTATCTCCTG	0.318000													3	137					0	0	0.000248	0	0
ABCA10	10349	broad.mit.edu	37	17	67146127	67146127	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:67146127G>A	uc010dfa.1	-	38	5354	c.4475C>T	c.(4474-4476)GCG>GTG	p.A1492V	ABCA10_uc002jhz.2_Intron|ABCA10_uc010wqs.1_Missense_Mutation_p.A484V|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1492					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					AAACTTACTCGCCTCTAACTT	0.353000													5	35					0	0	0.000602	0	0
CD300A	11314	broad.mit.edu	37	17	72470746	72470746	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:72470746C>T	uc002jkv.2	+	3	776	c.455C>T	c.(454-456)TCA>TTA	p.S152L	CD300A_uc002jkw.2_Missense_Mutation_p.S39L|CD300A_uc010dfr.2_Missense_Mutation_p.S39L|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	152	Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						CCACCTGTATCATCCACTACC	0.527000													46	45					0	0	0.002852	0	0
GRIN2C	2905	broad.mit.edu	37	17	72850838	72850838	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:72850838G>A	uc002jlt.1	-	2	550	c.394C>T	c.(394-396)CCC>TCC	p.P132S	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Missense_Mutation_p.P132S|GRIN2C_uc002jlv.1_Missense_Mutation_p.P132S	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	132	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	TGCACCTTGGGGGTGAGGACC	0.622000													5	27					0	0	0.001168	0	0
CBX8	57332	broad.mit.edu	37	17	77768979	77768979	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:77768979C>T	uc002jxd.1	-	5	718	c.625G>A	c.(625-627)GAC>AAC	p.D209N		NM_020649	NP_065700	Q9HC52	CBX8_HUMAN	chromobox homolog 8	209					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex	methylated histone residue binding				0			OV - Ovarian serous cystadenocarcinoma(97;0.0102)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			TGTGAGGGGTCCGGGAGCTCC	0.642000													11	14					0	0	0.002450	0	0
SLC38A10	124565	broad.mit.edu	37	17	79250839	79250839	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:79250839A>G	uc002jzz.1	-	7	1096	c.721T>C	c.(721-723)TAC>CAC	p.Y241H	SLC38A10_uc002jzy.1_Missense_Mutation_p.Y159H|SLC38A10_uc002kab.2_Missense_Mutation_p.Y241H	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	241	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			ACCATGACGTAGAAGGTGGTG	0.592000													25	30					0	0	0.005443	0	0
TEX19	400629	broad.mit.edu	37	17	80320467	80320467	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr17:80320467G>A	uc002keq.2	+	2	750	c.441G>A	c.(439-441)TGG>TGA	p.W147*		NM_207459	NP_997342	Q8NA77	TEX19_HUMAN	testis expressed 19	147						nucleus					0						GTCTTCCCTGGAGATTTGAGG	0.597000													30	27					0	0	0.007291	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887001	9887001	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr18:9887001G>A	uc002koi.3	+	2	974	c.525G>A	c.(523-525)AAG>AAA	p.K175K	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Silent_p.K108K	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	175	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|5.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GCCAGCCCAAGGAGGGTGACA	0.562000													38	94					0	0	0.004878	0	0
DSC1	1823	broad.mit.edu	37	18	28713961	28713961	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr18:28713961G>A	uc002kwn.2	-	13	2271	c.2009C>T	c.(2008-2010)CCA>CTA	p.P670L	DSC1_uc002kwm.2_Missense_Mutation_p.P670L	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	670	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			ACACTCAGATGGAGTTGAACA	0.363000													24	89					0	0	0.006320	0	0
DSC1	1823	broad.mit.edu	37	18	28725700	28725700	+	Silent	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr18:28725700T>C	uc002kwn.2	-	7	1075	c.813A>G	c.(811-813)GAA>GAG	p.E271E	DSC1_uc002kwm.2_Silent_p.E271E	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	271	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GAGTGTCAGGTTCGTCAAGGT	0.378000													20	55					0	0	0.002780	0	0
DSG3	1830	broad.mit.edu	37	18	29052340	29052340	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr18:29052340G>A	uc002kws.2	+	13	2100	c.1991G>A	c.(1990-1992)GGA>GAA	p.G664E	DSG3_uc002kwt.2_5'Flank	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	664	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GGCTCAGAAGGAACAATTCAT	0.458000													17	53					0	0	0.006122	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560437	44560437	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr18:44560437C>T	uc002lcr.1	-	1	1552	c.1199G>A	c.(1198-1200)GGA>GAA	p.G400E	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	400					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GGCAGATTTTCCAGTCTTTTT	0.478000													16	73					0	0	0.004007	0	0
ATP8B3	148229	broad.mit.edu	37	19	1785647	1785647	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:1785647C>T	uc002ltw.2	-	26	3448	c.3214G>A	c.(3214-3216)GAG>AAG	p.E1072K	ATP8B3_uc002ltv.2_Missense_Mutation_p.E1035K|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1072	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGAAGAGCTCGTCCTTCTGC	0.607000													11	24					0	0	0.001855	0	0
SF3A2	8175	broad.mit.edu	37	19	2246990	2246990	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:2246990C>T	uc002lvg.2	+	7	637	c.515C>T	c.(514-516)GCC>GTC	p.A172V	AMH_uc002lvh.2_5'Flank	NM_007165	NP_009096	Q15428	SF3A2_HUMAN	splicing factor 3a, subunit 2	172					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex	nucleic acid binding|zinc ion binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCTCATGGCCGCCGAGCCC	0.637000													14	63					0	0	0.007413	0	0
TUBB4	10382	broad.mit.edu	37	19	6501346	6501346	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:6501346G>A	uc002mfg.1	-	3	336	c.229C>T	c.(229-231)CGT>TGT	p.R77C	TUBB4_uc002mff.1_Missense_Mutation_p.R5C	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	77					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		GGGCCAGAACGGACAGAGTCC	0.587000													7	36					0	0	0.004482	0	0
CD209	30835	broad.mit.edu	37	19	7809871	7809871	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:7809871C>T	uc002mht.2	-	5	923	c.856G>A	c.(856-858)GAA>AAA	p.E286K	CD209_uc010xju.1_Missense_Mutation_p.E125K|CD209_uc010dvp.2_Missense_Mutation_p.E262K|CD209_uc002mhr.2_Missense_Mutation_p.E262K|CD209_uc002mhs.2_Missense_Mutation_p.E216K|CD209_uc002mhu.2_Missense_Mutation_p.E194K|CD209_uc010dvq.2_Missense_Mutation_p.E286K|CD209_uc002mhq.2_Missense_Mutation_p.E286K|CD209_uc002mhv.2_Missense_Mutation_p.E262K|CD209_uc002mhx.2_Missense_Mutation_p.E242K|CD209_uc002mhw.2_Missense_Mutation_p.E150K|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	286	Extracellular (Probable).|C-type lectin.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						GCCCCCACTTCTTTGCAGGCG	0.587000													12	72					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	9064474	9064474	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:9064474G>A	uc002mkp.2	-	3	23176	c.22972C>T	c.(22972-22974)CCA>TCA	p.P7658S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7660	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGGGTGTGGAAATCCCTGA	0.517000													11	34					0	0	0.000978	0	0
MUC16	94025	broad.mit.edu	37	19	9083586	9083586	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:9083586C>T	uc002mkp.2	-	1	8433	c.8229G>A	c.(8227-8229)TCG>TCA	p.S2743S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2743	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCACTGTGATCGAACCTTCAT	0.463000													54	86					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9086812	9086812	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:9086812C>T	uc002mkp.2	-	1	5207	c.5003G>A	c.(5002-5004)AGA>AAA	p.R1668K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1668	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAACTTCTTCTTTCCAGTGC	0.512000													22	83					0	0	0.002780	0	0
BEST2	54831	broad.mit.edu	37	19	12865723	12865723	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:12865723G>A	uc002mux.2	+	4	514	c.514G>A	c.(514-516)GAA>AAA	p.E172K		NM_017682	NP_060152	Q8NFU1	BEST2_HUMAN	vitelliform macular dystrophy 2-like 1	172	Cytoplasmic (Potential).				membrane depolarization|sensory perception of smell	chloride channel complex|cilium|plasma membrane	chloride channel activity			ovary(1)|pancreas(1)	2						CAAGAAGTTTGAAAACCTGAA	0.622000													6	19					0	0	0.001984	0	0
RNASEH2A	10535	broad.mit.edu	37	19	12923992	12923992	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:12923992C>T	uc002mvg.1	+	7	793	c.733C>T	c.(733-735)CTG>TTG	p.L245L	RNASEH2A_uc002mvf.1_Silent_p.L163L	NM_006397	NP_006388	O75792	RNH2A_HUMAN	ribonuclease H2, large subunit	245					DNA replication|RNA catabolic process	nucleus|ribonuclease H2 complex	metal ion binding|ribonuclease H activity|RNA binding			breast(2)|central_nervous_system(1)	3						CCAGACCATCCTGGAGAAAGA	0.592000													12	17					0	0	0.002450	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13915816	13915816	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:13915816C>T	uc002mxh.1	+	3	755	c.566C>T	c.(565-567)TCC>TTC	p.S189F	ZSWIM4_uc010xng.1_5'UTR	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	189							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			CTGCCCATCTCCGAGACGCTC	0.637000											OREG0025298	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	51					0	0	0.004990	0	0
NOTCH3	4854	broad.mit.edu	37	19	15299856	15299856	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:15299856C>T	uc002nan.2	-	8	1398	c.1322G>A	c.(1321-1323)CGA>CAA	p.R441Q	NOTCH3_uc002nao.1_Missense_Mutation_p.R441Q	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	441	Extracellular (Potential).|EGF-like 11; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GGCCTGGTTTCGGCAGGGCCC	0.657000													5	19					0	0	0.000602	0	0
CYP4F12	66002	broad.mit.edu	37	19	15791260	15791260	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:15791260G>A	uc002nbl.2	+	5	517	c.456G>A	c.(454-456)ACG>ACA	p.T152T	CYP4F12_uc010xoo.1_Silent_p.T152T|CYP4F12_uc010xop.1_3'UTR	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GGATGCTGACGCCCGCCTTCC	0.542000													20	33					0	0	0.007413	0	0
UNC13A	23025	broad.mit.edu	37	19	17756847	17756847	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:17756847C>T	uc002nhd.2	-	18	2382	c.2382G>A	c.(2380-2382)GGG>GGA	p.G794G		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	706	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TCTTGGTCTTCCCGACCTGGA	0.567000													17	17					0	0	0.006122	0	0
LSM4	25804	broad.mit.edu	37	19	18420504	18420504	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:18420504C>T	uc002niq.2	-	4	483	c.312G>A	c.(310-312)ATG>ATA	p.M104I		NM_012321	NP_036453	Q9Y4Z0	LSM4_HUMAN	U6 snRNA-associated Sm-like protein 4	104					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|mRNA processing|RNA splicing	cytosol|U6 snRNP	protein binding|RNA binding				0						CAGCGCCGCCCATGCCGCGGC	0.677000													17	52					0	0	0.008871	0	0
CRLF1	9244	broad.mit.edu	37	19	18707559	18707560	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:18707559_18707560GG>AA	uc010ebt.1	-	6	1090_1091	c.896_897CC>TT	c.(895-897)GCC>GTT	p.A299V		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	299	Fibronectin type-III 2.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						GTTTCAGGCCGGCCAGGCGGCA	0.455000													20	17					0	0	0.004672	0	0
COMP	1311	broad.mit.edu	37	19	18897365	18897365	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:18897365G>A	uc002nke.2	-	11	1267	c.1231C>T	c.(1231-1233)CCC>TCC	p.P411S	COMP_uc002nkd.2_Missense_Mutation_p.P378S|COMP_uc010xqj.1_Missense_Mutation_p.P358S	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	411	TSP type-3 5.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						CTCTTCTGGGGACAGTTGTCA	0.597000													23	44					0	0	0.003954	0	0
DDX49	54555	broad.mit.edu	37	19	19032527	19032527	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:19032527C>T	uc002nkq.1	+	3	352	c.295C>T	c.(295-297)CTG>TTG	p.L99L	COPE_uc002nkk.2_5'Flank|COPE_uc002nkl.2_5'Flank|COPE_uc002nkm.2_5'Flank|COPE_uc002nkn.2_5'Flank|HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|DDX49_uc002nkr.1_RNA|DDX49_uc002nks.1_5'UTR|DDX49_uc002nkt.1_5'Flank	NM_019070	NP_061943	Q9Y6V7	DDX49_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	99	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			Epithelial(12;0.0289)			GCCTCTAGGGCTGAAAGACTG	0.647000													31	60					0	0	0.005524	0	0
ARMC6	93436	broad.mit.edu	37	19	19168362	19168362	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:19168362C>T	uc002nld.2	+	9	1779	c.1431C>T	c.(1429-1431)GCC>GCT	p.A477A	ARMC6_uc002nlc.2_Silent_p.A452A|ARMC6_uc010xql.1_Silent_p.A384A|ARMC6_uc002nle.2_Silent_p.A452A|ARMC6_uc010xqm.1_Silent_p.A477A	NM_033415	NP_219483	Q6NXE6	ARMC6_HUMAN	armadillo repeat containing 6	477							protein binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.66e-06)|Epithelial(12;0.000391)			TGGCCAAGGCCGCCCTGCGGG	0.677000													18	76					0	0	0.006122	0	0
ZNF208	7757	broad.mit.edu	37	19	22156959	22156959	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:22156959C>T	uc002nqp.2	-	4	1026	c.877G>A	c.(877-879)GCC>ACC	p.A293T	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTACTAAAGGCTTTGCCACAT	0.398000													12	42					0	0	0.002450	0	0
CHST8	64377	broad.mit.edu	37	19	34263781	34263781	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:34263781G>A	uc002nus.3	+	5	1593	c.1088G>A	c.(1087-1089)CGC>CAC	p.R363H	CHST8_uc002nut.3_Missense_Mutation_p.R363H|CHST8_uc002nuu.2_Missense_Mutation_p.R363H	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	363	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					AGCCTCATCCGCGCGCCGCGG	0.632000													10	35					0	0	0.008291	0	0
NPHS1	4868	broad.mit.edu	37	19	36322622	36322622	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:36322622C>T	uc002oby.2	-	24	3209	c.3209G>A	c.(3208-3210)GGG>GAG	p.G1070E	NPHS1_uc010eem.1_Intron	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	1070	Helical; (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGAAGCCCCCCAAGAGCGAA	0.647000													4	2					0	0	0.001168	0	0
C19orf46	163183	broad.mit.edu	37	19	36499198	36499199	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:36499198_36499199CC>TT	uc002ocq.1	-	2	288_289	c.199_200GG>AA	c.(199-201)GGC>AAC	p.G67N	C19orf46_uc002ocr.1_Missense_Mutation_p.G67N|C19orf46_uc002ocs.1_Missense_Mutation_p.G67N|C19orf46_uc010een.1_Intron	NM_001039876	NP_001034965	Q8N205	SYNE4_HUMAN	hypothetical protein LOC163183	67	Cytoplasmic (Potential).				establishment of epithelial cell apical/basal polarity	integral to nuclear outer membrane	actin binding			ovary(1)	1	all_lung(56;1.35e-06)|Lung NSC(56;2.15e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			AGGCTCATTGCCCCTTGGCCCA	0.658000													19	67					0	0	0.004672	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38573337	38573337	+	Missense_Mutation	SNP	G	A	A	rs141105353		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:38573337G>A	uc002ohk.2	+	3	1641	c.1132G>A	c.(1132-1134)GCC>ACC	p.A378T		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	378					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CGCTTCCGCCGCCTCGGCCAT	0.682000													10	26					0	0	0.006214	0	0
RYR1	6261	broad.mit.edu	37	19	38969090	38969090	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:38969090C>T	uc002oit.2	+	31	4600	c.4470C>T	c.(4468-4470)AAC>AAT	p.N1490N	RYR1_uc002oiu.2_Silent_p.N1490N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1490	Cytoplasmic.|B30.2/SPRY 3.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGTGTAGCAACTGCTACATGG	0.607000													23	26					0	0	0.005443	0	0
LGALS13	29124	broad.mit.edu	37	19	40095857	40095857	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:40095857G>A	uc002omb.2	+	3	172	c.132G>A	c.(130-132)ATG>ATA	p.M44I		NM_013268	NP_037400	Q9UHV8	PP13_HUMAN	galectin-13	44	Galectin.				lipid catabolic process|phospholipid metabolic process		carboxylesterase activity|lysophospholipase activity|sugar binding			ovary(1)	1	all_cancers(60;1.77e-05)|all_lung(34;5.38e-08)|Lung NSC(34;6.37e-08)|Ovarian(47;0.116)		Epithelial(26;3.28e-26)|OV - Ovarian serous cystadenocarcinoma(5;7.31e-25)|all cancers(26;1.15e-23)|LUSC - Lung squamous cell carcinoma(53;0.00281)			ACACTGACATGGATGAGGATT	0.517000													24	24					0	0	0.003954	0	0
FCGBP	8857	broad.mit.edu	37	19	40408528	40408528	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:40408528C>T	uc002omp.3	-	8	4319	c.4311G>A	c.(4309-4311)GGG>GGA	p.G1437G		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1437	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGTCCTCGCTCCCCGGCGGGC	0.647000													25	53					0	0	0.005443	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41447372	41447372	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:41447372G>A	uc010ehh.1	+	5	825	c.817G>A	c.(817-819)GAA>AAA	p.E273K	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450, family 2, subfamily B, polypeptide 6;											ovary(1)|skin(1)	2						GCTCCACATGGAAAAAGTGGG	0.323000													31	50					0	0	0.008361	0	0
CEACAM5	1048	broad.mit.edu	37	19	42224866	42224866	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:42224866C>T	uc002ork.2	+	8	1917	c.1796C>T	c.(1795-1797)TCC>TTC	p.S599F	CEACAM5_uc002orj.1_Missense_Mutation_p.S598F|CEACAM5_uc002orl.2_Missense_Mutation_p.S599F	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	599	Ig-like 7.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CCCATCATTTCCCCCCCAGAC	0.547000													78	109					0	0	0.003610	0	0
C19orf61	56006	broad.mit.edu	37	19	44242349	44242349	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:44242349G>A	uc002oxj.2	-	8	1177	c.834C>T	c.(832-834)ATC>ATT	p.I278I	C19orf61_uc002oxk.2_Silent_p.I278I|C19orf61_uc010eiy.1_Silent_p.I278I	NM_019108	NP_061981	Q9H0W8	SMG9_HUMAN	SMG9 protein	278					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	intracellular	protein binding				0		Prostate(69;0.0352)				GATGGTCTAGGATAGAAGGGC	0.507000													29	67					0	0	0.007291	0	0
CKM	1158	broad.mit.edu	37	19	45810756	45810756	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:45810756C>T	uc002pbd.2	-	7	1004	c.930G>A	c.(928-930)GAG>GAA	p.E310E		NM_001824	NP_001815	P06732	KCRM_HUMAN	muscle creatine kinase	310	Phosphagen kinase C-terminal.				creatine metabolic process	cytosol	ATP binding|creatine kinase activity			skin(1)	1		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	GGGTGAGGATCTCCTCGAACT	0.642000													10	32					0	0	0.006214	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307974	46307974	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:46307974C>T	uc002pdm.2	-	3	1332	c.1189G>A	c.(1189-1191)GAG>AAG	p.E397K	RSPH6A_uc002pdl.2_Missense_Mutation_p.E133K	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	397	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						ACGGccttctcctcgtcctcc	0.348000													14	18					0	0	0.001855	0	0
NPAS1	4861	broad.mit.edu	37	19	47542741	47542741	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:47542741C>T	uc002pfw.2	+	8	1077	c.881C>T	c.(880-882)CCC>CTC	p.P294L	NPAS1_uc002pfx.2_Missense_Mutation_p.P119L|NPAS1_uc002pfy.2_Missense_Mutation_p.P294L|NPAS1_uc010xyj.1_Missense_Mutation_p.P118L	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	294	PAS 2.				central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		CCCCCGGCCCCCCTGGCTGAG	0.667000													6	37					0	0	0.001984	0	0
PPP1R15A	23645	broad.mit.edu	37	19	49376550	49376550	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:49376550C>T	uc002pky.3	+	2	329	c.60C>T	c.(58-60)TTC>TTT	p.F20F		NM_014330	NP_055145	O75807	PR15A_HUMAN	protein phosphatase 1, regulatory subunit 15A	20	Required for localization in the endoplasmic reticulum.				apoptosis|cell cycle arrest|regulation of translation|response to DNA damage stimulus	endoplasmic reticulum	protein binding			lung(1)	1		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000244)|all cancers(93;0.000694)|GBM - Glioblastoma multiforme(486;0.0222)|Epithelial(262;0.033)		ACCCTTTCTTCCTCCTGTCCC	0.612000													20	29					0	0	0.002299	0	0
GYS1	2997	broad.mit.edu	37	19	49477978	49477978	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:49477978G>A	uc002plp.2	-	11	1562	c.1321C>T	c.(1321-1323)CCC>TCC	p.P441S	GYS1_uc010xzy.1_Missense_Mutation_p.P74S|GYS1_uc010emm.2_Missense_Mutation_p.P377S|GYS1_uc010xzz.1_Missense_Mutation_p.P361S|GYS1_uc010yaa.1_RNA	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	441					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		CACACAGGGGGGAAAGACTGC	0.592000													11	57					0	0	0.003163	0	0
C19orf63	284361	broad.mit.edu	37	19	50983963	50983964	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:50983963_50983964GG>AA	uc002psl.2	+	5	594_595	c.528_529GG>AA	c.(526-531)GTGGAC>GTAAAC	p.D177N	C19orf63_uc002psj.2_Missense_Mutation_p.D177N|C19orf63_uc002psk.2_Missense_Mutation_p.D177N	NM_206538	NP_996261	Q5UCC4	INM02_HUMAN	hematopoietic signal peptide-containing isoform	177	Extracellular (Potential).					extracellular region|integral to membrane					0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00733)|GBM - Glioblastoma multiforme(134;0.0252)		TGGAGGACGTGGACCTGGAGCT	0.713000													4	12					0	0	0.004672	0	0
NLRP9	338321	broad.mit.edu	37	19	56244333	56244333	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:56244333C>T	uc002qly.2	-	2	892	c.864G>A	c.(862-864)CGG>CGA	p.R288R		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	288	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GTTTTGGATGCCGCAACATAA	0.383000													32	36					0	0	0.008361	0	0
NLRP4	147945	broad.mit.edu	37	19	56370377	56370377	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:56370377G>A	uc002qmd.3	+	3	2040	c.1618G>A	c.(1618-1620)GAG>AAG	p.E540K	NLRP4_uc002qmf.2_Missense_Mutation_p.E465K|NLRP4_uc010etf.2_Missense_Mutation_p.E371K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	540							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GAGCTTAGGGGAGCGTGGCAA	0.453000													11	58					0	0	0.001368	0	0
NLRP8	126205	broad.mit.edu	37	19	56466504	56466504	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:56466504G>A	uc002qmh.2	+	3	1151	c.1080G>A	c.(1078-1080)ATG>ATA	p.M360I	NLRP8_uc010etg.2_Missense_Mutation_p.M360I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	360	NACHT.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTAATACGATGGAAAAAATCA	0.458000													36	44					0	0	0.003755	0	0
GALP	85569	broad.mit.edu	37	19	56691971	56691971	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:56691971C>T	uc002qmo.1	+	3	186	c.104C>T	c.(103-105)ACC>ATC	p.T35I	GALP_uc010eti.2_Intron	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	35					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		GGAGGCTGGACCCTCAATAGT	0.607000													27	53					0	0	0.008361	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701318	56701318	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:56701318C>T	uc010ygh.1	-	4	1366	c.1366G>A	c.(1366-1368)GTT>ATT	p.V456I		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	456	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CGCTGGTGAACGTTCAGGTTC	0.537000													19	35					0	0	0.001523	0	0
PEG3	5178	broad.mit.edu	37	19	57327090	57327090	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:57327090C>G	uc002qnu.2	-	7	3071	c.2720G>C	c.(2719-2721)AGT>ACT	p.S907T	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.S878T|PEG3_uc002qnv.2_Missense_Mutation_p.S907T|PEG3_uc002qnw.2_Missense_Mutation_p.S783T|PEG3_uc002qnx.2_Missense_Mutation_p.S781T|PEG3_uc010etr.2_Missense_Mutation_p.S907T	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	907					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCCAGGAACACTTTTCTGAGG	0.463000													49	77					0	0	0.003610	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565009	58565009	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:58565009C>T	uc002qrc.1	+	6	1064	c.817C>T	c.(817-819)CAA>TAA	p.Q273*		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	273					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		AGGTGGTACCCAAGAGGCTGT	0.627000													12	65					0	0	0.002450	0	0
TPO	7173	broad.mit.edu	37	2	1480872	1480872	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:1480872C>T	uc002qww.2	+	8	925	c.834C>T	c.(832-834)GCC>GCT	p.A278A	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Silent_p.A278A|TPO_uc002qwr.2_Silent_p.A278A|TPO_uc002qwx.2_Silent_p.A278A|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Silent_p.A278A	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	278	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CGGAGGAGGCCCGGCCGGCCG	0.701000													6	28					0	0	0.001984	0	0
GRHL1	29841	broad.mit.edu	37	2	10101265	10101265	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:10101265C>T	uc002raa.2	+	4	540	c.369C>T	c.(367-369)GTC>GTT	p.V123V	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_5'UTR|GRHL1_uc010yjb.1_5'UTR	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	123					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		TTAACATTGTCCTTCCCCATG	0.473000													5	24					0	0	0.000602	0	0
NBAS	51594	broad.mit.edu	37	2	15615855	15615855	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:15615855G>A	uc002rcc.1	-	14	1323	c.1297C>T	c.(1297-1299)CCT>TCT	p.P433S	NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	433										ovary(2)|liver(1)|skin(1)	4						GTGACTTGAGGTGATGGTTCA	0.368000													16	30					0	0	0.008871	0	0
MYCN	4613	broad.mit.edu	37	2	16086120	16086120	+	Silent	SNP	C	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:16086120C>A	uc002rci.2	+	3	1596	c.1296C>A	c.(1294-1296)TCC>TCA	p.S432S	MYCN_uc010yjr.1_Silent_p.S424S	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	432	Helix-loop-helix motif.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			ATGTCCACTCCCTCCAGGCCG	0.512000			A		neuroblastoma								45	182					2.77807e-22	3.5245e-22	0.003214	1	0
APOB	338	broad.mit.edu	37	2	21232161	21232161	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:21232161C>T	uc002red.2	-	26	7707	c.7579G>A	c.(7579-7581)GAC>AAC	p.D2527N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2527					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGCTGAATGTCCATTTGATAC	0.448000													159	648					0	0	0.003610	0	0
OTOF	9381	broad.mit.edu	37	2	26700578	26700578	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:26700578C>T	uc002rhk.2	-	19	2381	c.2254G>A	c.(2254-2256)GAG>AAG	p.E752K	OTOF_uc002rhh.2_Missense_Mutation_p.E5K|OTOF_uc002rhi.2_Missense_Mutation_p.E62K|OTOF_uc002rhj.2_Missense_Mutation_p.E5K	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	752	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAGGACTTCTCCGTTTTGATC	0.632000													11	34					0	0	0.008291	0	0
FNDC4	64838	broad.mit.edu	37	2	27715590	27715590	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:27715590C>T	uc002rkx.2	-	6	1018	c.612G>A	c.(610-612)AAG>AAA	p.K204K		NM_022823	NP_073734	Q9H6D8	FNDC4_HUMAN	fibronectin type III domain containing 4	204	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(172;0.155)					TTCCCTTCTCCTTGGGATTGT	0.542000													43	65					0	0	0.002852	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43926991	43926991	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:43926991C>T	uc010yny.1	+	8	977	c.894C>T	c.(892-894)TCC>TCT	p.S298S	PLEKHH2_uc002rte.3_Silent_p.S298S|PLEKHH2_uc002rtf.3_Silent_p.S297S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	298						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AAGGAAGATCCAAGTCCAGAT	0.517000													147	306					0	0	0.003610	0	0
EPAS1	2034	broad.mit.edu	37	2	46607658	46607658	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:46607658C>T	uc002ruv.2	+	12	2335	c.1847C>T	c.(1846-1848)TCC>TTC	p.S616F	EPAS1_uc002ruw.2_Missense_Mutation_p.S82F	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	616					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			AGCAAAGCATCCCTGCCACCG	0.592000													54	98					0	0	0.003610	0	0
GTF2A1L	11036	broad.mit.edu	37	2	48960051	48960051	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:48960051C>T	uc002rwt.2	+	9	1415	c.1349C>T	c.(1348-1350)TCG>TTG	p.S450L	LHCGR_uc002rwu.3_Intron|LHCGR_uc002rwv.2_Intron	NM_172196	NP_751946	Q9UNN4	TF2AY_HUMAN	general transcription factor IIA, 1-like isoform	Error:Variant_position_missing_in_Q9UNN4_after_alignment					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	transcription factor TFIIA complex	DNA binding|transcription coactivator activity				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGAAGGACATCGTTTAACACC	0.244000													59	116					0	0	0.003610	0	0
PSME4	23198	broad.mit.edu	37	2	54115873	54115873	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:54115873G>A	uc002rxp.2	-	38	4429	c.4373C>T	c.(4372-4374)TCC>TTC	p.S1458F	PSME4_uc010yop.1_Missense_Mutation_p.S1344F|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.S833F|PSME4_uc010fbv.1_Missense_Mutation_p.S602F|PSME4_uc010fbt.1_5'Flank	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1458					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			ATCTACAAAGGATCCTCCTTC	0.353000													35	90					0	0	0.005524	0	0
VPS54	51542	broad.mit.edu	37	2	64160857	64160857	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:64160857G>A	uc002scq.2	-	12	1852	c.1689C>T	c.(1687-1689)TCC>TCT	p.S563S	VPS54_uc002scp.2_Silent_p.S551S|VPS54_uc002sco.2_Silent_p.S48S|VPS54_uc010fct.2_Silent_p.S410S	NM_016516	NP_057600	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 isoform 1	563					protein transport|retrograde transport, endosome to Golgi						0						GCTCTTTGCTGGATGAAGAAT	0.418000													30	47					0	0	0.003755	0	0
RNF103	7844	broad.mit.edu	37	2	86839319	86839319	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:86839319T>A	uc002srn.2	-	3	1414	c.445A>T	c.(445-447)ATA>TTA	p.I149L	VPS24_uc010ytl.1_Intron|RNF103_uc002srm.2_Missense_Mutation_p.I10L|uc002sro.2_Intron	NM_005667	NP_005658	O00237	RN103_HUMAN	ring finger protein 103	149					central nervous system development|ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(1)	1						CCTGTACGTATTCCAAATCTT	0.378000													23	77					0	0	0.003330	0	0
ANKRD36B	57730	broad.mit.edu	37	2	98171534	98171534	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:98171534T>C	uc010yvc.1	-	14	1440	c.1160A>G	c.(1159-1161)CAA>CGA	p.Q387R	ANKRD36B_uc010yve.1_RNA|ANKRD36B_uc010fif.2_RNA	NM_025190	NP_079466	Q8N2N9	AN36B_HUMAN	ankyrin repeat domain 36B	387											0						TGTCCCACATTGTAGTCCATC	0.299000													19	28					0	0	0.002299	0	0
MGAT4A	11320	broad.mit.edu	37	2	99342746	99342746	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:99342746G>A	uc002sze.2	-	2	364	c.50C>T	c.(49-51)TCC>TTC	p.S17F	MGAT4A_uc010fil.2_5'UTR	NM_012214	NP_036346	Q9UM21	MGT4A_HUMAN	alpha-1,3-mannosyl-glycoprotein	17	Helical; Signal-anchor for type II membrane protein; (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			skin(1)	1						AGTAAGGAAGGAAGTGATAAA	0.408000													13	32					0	0	0.006122	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460106	107460106	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:107460106C>T	uc002tdq.2	-	2	447	c.328G>A	c.(328-330)GAG>AAG	p.E110K	ST6GAL2_uc002tdr.2_Missense_Mutation_p.E110K|ST6GAL2_uc002tds.3_Missense_Mutation_p.E110K	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	110	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GAAAAAAACTCTTTATGTTCA	0.567000													145	82					0	0	0.003610	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125204364	125204364	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:125204364C>T	uc002tno.2	+	6	1132	c.768C>T	c.(766-768)CCC>CCT	p.P256P	CNTNAP5_uc010flu.2_Silent_p.P256P	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	256	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GCAGCTTGCCCTCTGCCACCC	0.597000													45	76					0	0	0.003610	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125555877	125555877	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:125555877T>C	uc002tno.2	+	19	3558	c.3194T>C	c.(3193-3195)GTT>GCT	p.V1065A	CNTNAP5_uc010flu.2_Missense_Mutation_p.V1066A	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	1065	Extracellular (Potential).|Laminin G-like 4.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GACTTCGTGGTTGTTCTGCTC	0.502000													11	74					0	0	0.001368	0	0
BIN1	274	broad.mit.edu	37	2	127808019	127808019	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:127808019G>A	uc002tns.1	-	18	1997	c.1652C>T	c.(1651-1653)CCC>CTC	p.P551L	BIN1_uc010yzf.1_Missense_Mutation_p.P343L|BIN1_uc010yzg.1_Missense_Mutation_p.P428L|BIN1_uc002tnu.1_Missense_Mutation_p.P382L|BIN1_uc002toa.1_Missense_Mutation_p.P440L|BIN1_uc002tnt.1_Missense_Mutation_p.P367L|BIN1_uc002tnv.1_Missense_Mutation_p.P508L|BIN1_uc002tnw.1_Missense_Mutation_p.P455L|BIN1_uc002tnx.1_Missense_Mutation_p.P412L|BIN1_uc002tny.1_Missense_Mutation_p.P464L|BIN1_uc002tnz.1_Missense_Mutation_p.P476L|BIN1_uc002tob.1_Missense_Mutation_p.P397L|BIN1_uc002toc.1_Missense_Mutation_p.P433L	NM_139343	NP_647593	O00499	BIN1_HUMAN	bridging integrator 1 isoform 1	551	SH3.				cell proliferation|endocytosis|interspecies interaction between organisms|multicellular organismal development	actin cytoskeleton|nucleus				ovary(2)|central_nervous_system(2)|skin(2)|lung(1)	7	Colorectal(110;0.0831)			BRCA - Breast invasive adenocarcinoma(221;0.073)		GTTCTGGAAGGGGATCACCAG	0.662000											OREG0014962	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	51					0	0	0.003610	0	0
SAP130	79595	broad.mit.edu	37	2	128747140	128747140	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:128747140G>A	uc002tpp.2	-	13	1988	c.1856C>T	c.(1855-1857)TCA>TTA	p.S619L	SAP130_uc002tpn.2_Missense_Mutation_p.S380L|SAP130_uc002tpo.2_Missense_Mutation_p.S364L|SAP130_uc010fmd.2_Missense_Mutation_p.S619L|SAP130_uc002tpq.1_Missense_Mutation_p.S592L	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	619					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		AAAATTACCTGAAGTCTTTCC	0.433000													100	67					0	0	0.003610	0	0
POTEF	728378	broad.mit.edu	37	2	130832375	130832375	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:130832375C>T	uc010fmh.2	-	17	3070	c.2670G>A	c.(2668-2670)ATG>ATA	p.M890I		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	890	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						TGAGGATCTTCATGAGGTAGT	0.592000													6	114					0	0	0.001168	0	0
LRP1B	53353	broad.mit.edu	37	2	141215198	141215198	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:141215198C>T	uc002tvj.1	-	61	10620	c.9648G>A	c.(9646-9648)GGG>GGA	p.G3216G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3216	Extracellular (Potential).|LDL-receptor class B 31.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTGCAATCACCCCTGGAATAT	0.423000										TSP Lung(27;0.18)			30	133					0	0	0.002096	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711624	155711624	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:155711624G>A	uc002tyv.1	+	3	1500	c.1305G>A	c.(1303-1305)ATG>ATA	p.M435I	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	435	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	ACTTGCCCATGAAACTTCAAC	0.428000													50	67					0	0	0.003610	0	0
PLA2R1	22925	broad.mit.edu	37	2	160898621	160898621	+	Silent	SNP	A	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:160898621A>C	uc002ube.1	-	3	789	c.582T>G	c.(580-582)CGT>CGG	p.R194R	PLA2R1_uc010zcp.1_Silent_p.R194R|PLA2R1_uc002ubf.2_Silent_p.R194R	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	194	Extracellular (Potential).|Fibronectin type-II.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						CCCGACCTTCACGGGTACATT	0.448000													25	72					0	0	0.003330	0	0
LRP2	4036	broad.mit.edu	37	2	170103467	170103467	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:170103467G>A	uc002ues.2	-	21	3151	c.2938C>T	c.(2938-2940)CCT>TCT	p.P980S	LRP2_uc010zdf.1_Missense_Mutation_p.P843S	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	980	EGF-like 4.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCACCGTTAGGATGCGTGGGT	0.512000													15	49					0	0	0.004007	0	0
TTN	7273	broad.mit.edu	37	2	179396737	179396737	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:179396737C>T	uc010zfg.1	-	307	97125	c.96901G>A	c.(96901-96903)GAA>AAA	p.E32301K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25996K|TTN_uc010zfi.1_Missense_Mutation_p.E25929K|TTN_uc010zfj.1_Missense_Mutation_p.E25804K|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33228							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGTCATCTTCGTATTCCTCA	0.527000													8	29					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179639101	179639101	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:179639101C>T	uc010zfg.1	-	30	7114	c.6890G>A	c.(6889-6891)GGA>GAA	p.G2297E	TTN_uc010zfh.1_Missense_Mutation_p.G2251E|TTN_uc010zfi.1_Missense_Mutation_p.G2251E|TTN_uc010zfj.1_Missense_Mutation_p.G2251E|TTN_uc002unb.2_Missense_Mutation_p.G2297E|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2297							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATACCATTTTCCTTCTATATT	0.393000													32	73					0	0	0.001786	0	0
TTN	7273	broad.mit.edu	37	2	179640134	179640134	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:179640134C>T	uc010zfg.1	-	28	6681	c.6457G>A	c.(6457-6459)GCC>ACC	p.A2153T	TTN_uc010zfh.1_Missense_Mutation_p.A2107T|TTN_uc010zfi.1_Missense_Mutation_p.A2107T|TTN_uc010zfj.1_Missense_Mutation_p.A2107T|TTN_uc002unb.2_Missense_Mutation_p.A2153T|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2153							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTTGATGGCTTTTACCATG	0.448000													18	50					0	0	0.004990	0	0
FRZB	2487	broad.mit.edu	37	2	183707234	183707234	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:183707234C>T	uc002upa.1	-	3	782	c.564G>A	c.(562-564)AAG>AAA	p.K188K		NM_001463	NP_001454	Q92765	SFRP3_HUMAN	frizzled-related protein precursor	188	NTR.				brain development|cochlea morphogenesis|gonad development|mammary gland involution|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cartilage development|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of hepatocyte differentiation|positive regulation of apoptosis|positive regulation of fat cell differentiation|skeletal system development|vasculature development|Wnt receptor signaling pathway	cytoplasm|extracellular space|membrane	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.109)|Epithelial(96;0.231)			GGAAATAGGTCTTCTGTGTAG	0.358000													34	71					0	0	0.003271	0	0
MSTN	2660	broad.mit.edu	37	2	190922360	190922360	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:190922360G>A	uc002urp.2	-	3	885	c.752C>T	c.(751-753)CCG>CTG	p.P251L		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	251					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			CTCTAAAAACGGATTCTGTTT	0.368000													12	31					0	0	0.001855	0	0
ERBB4	2066	broad.mit.edu	37	2	212295699	212295699	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:212295699C>T	uc002veg.1	-	21	2712	c.2614G>A	c.(2614-2616)GAA>AAA	p.E872K	ERBB4_uc002veh.1_Missense_Mutation_p.E872K|ERBB4_uc010zji.1_Missense_Mutation_p.E862K|ERBB4_uc010zjj.1_Missense_Mutation_p.E862K	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	872	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity	p.E872K(1)		lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TACTCTTTTTCATCTCCTTCC	0.378000										TSP Lung(8;0.080)			30	60					0	0	0.002445	0	0
SPAG16	79582	broad.mit.edu	37	2	214354720	214354720	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:214354720C>T	uc002veq.2	+	10	1068	c.976C>T	c.(976-978)CCA>TCA	p.P326S	SPAG16_uc010fuz.1_Missense_Mutation_p.P177S|SPAG16_uc002ver.2_Missense_Mutation_p.P272S|SPAG16_uc010zjk.1_Missense_Mutation_p.P232S	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	326					cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GCAACCAAATCCAAACCTGAA	0.353000													86	79					0	0	0.003610	0	0
OBSL1	23363	broad.mit.edu	37	2	220432111	220432111	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:220432111G>A	uc010fwk.2	-	4	1778	c.1721C>T	c.(1720-1722)GCC>GTC	p.A574V	OBSL1_uc010fwl.1_Missense_Mutation_p.A49V|OBSL1_uc002vmi.2_Missense_Mutation_p.A574V|OBSL1_uc002vmj.2_Missense_Mutation_p.A161V	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	574	Fibronectin type-III.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		CACCTCCACGGCTCCGGCTTT	0.637000													8	13					0	0	0.004482	0	0
AGAP1	116987	broad.mit.edu	37	2	236949435	236949435	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:236949435C>T	uc002vvs.2	+	15	2436	c.1841C>T	c.(1840-1842)TCG>TTG	p.S614L	AGAP1_uc002vvt.2_Missense_Mutation_p.S561L	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	614	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						GCCCTGCAGTCGATCCGGAAC	0.622000													14	46					0	0	0.004990	0	0
MCM8	84515	broad.mit.edu	37	20	5963742	5963742	+	Missense_Mutation	SNP	C	T	T	rs61752704		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:5963742C>T	uc002wmi.2	+	14	2041	c.1664C>T	c.(1663-1665)TCC>TTC	p.S555F	MCM8_uc002wmj.2_Missense_Mutation_p.S539F|MCM8_uc002wmk.2_Missense_Mutation_p.S595F|MCM8_uc002wml.2_Missense_Mutation_p.S555F|MCM8_uc010gbp.2_Missense_Mutation_p.S508F|MCM8_uc002wmm.2_Missense_Mutation_p.S93F	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	555	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						GCAAGAACTTCCATTATTGCT	0.378000													23	27					0	0	0.002780	0	0
SEL1L2	80343	broad.mit.edu	37	20	13850804	13850804	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:13850804C>T	uc010gcf.2	-	13	1232	c.1150G>A	c.(1150-1152)GGA>AGA	p.G384R	SEL1L2_uc002woq.3_Missense_Mutation_p.G245R|SEL1L2_uc010zrl.1_Missense_Mutation_p.G384R|SEL1L2_uc002wor.2_RNA	NM_025229	NP_079505	Q5TEA6	SE1L2_HUMAN	sel-1 suppressor of lin-12-like 2 precursor	384	Extracellular (Potential).|Sel1-like 7.					integral to membrane	binding			ovary(2)	2						ACTCCTTTTCCATGAAAGTAA	0.333000													28	53					0	0	0.002445	0	0
FRG1B	284802	broad.mit.edu	37	20	29625895	29625895	+	Missense_Mutation	SNP	G	A	A	rs76435412	by1000genomes	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:29625895G>A	uc010ztl.1	+	2	81	c.49G>A	c.(49-51)GGA>AGA	p.G17R	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATCTGGCTATGGAAAATATCT	0.343000													7	58					0	0	0.008291	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869541	36869541	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:36869541G>A	uc002xhy.1	-	3	1264	c.992C>T	c.(991-993)TCC>TTC	p.S331F	KIAA1755_uc002xhz.1_Missense_Mutation_p.S331F	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	331										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				ATTTCCCAAGGAAGGTCCTTC	0.488000													52	270					0	0	0.003610	0	0
TOP1	7150	broad.mit.edu	37	20	39750645	39750646	+	Splice_Site	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:39750645_39750646GG>AA	uc002xjl.2	+	20	2292	c.2046_splice	c.e20-1	p.K682_splice	uc002xjn.1_Intron	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I						DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	TATTCTTCTAGGGTAGTAGAGT	0.465000			T	NUP98	AML*								47	54					0	0	0.004672	0	0
PREX1	57580	broad.mit.edu	37	20	47274699	47274699	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:47274699G>A	uc002xtw.1	-	17	1972	c.1949C>T	c.(1948-1950)TCC>TTC	p.S650F	PREX1_uc002xtv.1_5'Flank	NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	650	PDZ.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			CCTCTGGACGGACTTCACCAC	0.647000											OREG0026010	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	177	190					0	0	0.003610	0	0
KCNB1	3745	broad.mit.edu	37	20	48098557	48098557	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:48098557G>A	uc002xur.1	-	1	625	c.461C>T	c.(460-462)ACC>ATC	p.T154I	KCNB1_uc002xus.1_Missense_Mutation_p.T154I	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	154	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CTCCCGTAGGGTCTCGGCCTC	0.577000													16	115					0	0	0.004007	0	0
GNAS	2778	broad.mit.edu	37	20	57430019	57430019	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:57430019G>A	uc002xzw.2	+	1	1984	c.1699G>A	c.(1699-1701)GAA>AAA	p.E567K	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GTACTACGATGAAGGGGTGGC	0.687000			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			12	18					0	0	0.002450	0	0
LAMA5	3911	broad.mit.edu	37	20	60911420	60911421	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:60911420_60911421GG>AA	uc002ycq.2	-	18	2365_2366	c.2298_2299CC>TT	c.(2296-2301)AGCCCC>AGTTCC	p.P767S		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	767	Laminin EGF-like 9.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGGTTGCTGGGGCTCAGTCCCC	0.624000													7	90					0	0	0.004672	0	0
MIR133A2	406923	broad.mit.edu	37	20	61162152	61162152	+	RNA	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:61162152G>A	hsa-mir-133a-2|MI0000451	+			c.34G>A			C20orf166_uc011aaj.1_Intron|C20orf166_uc011aal.1_RNA																	0						CTGGTAAAATGGAACCAAATC	0.597000													12	11					0	0	0.003163	0	0
PCMTD2	55251	broad.mit.edu	37	20	62891364	62891364	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr20:62891364G>T	uc002yil.3	+	2	246	c.46G>T	c.(46-48)GAT>TAT	p.D16Y	PCMTD2_uc002yim.3_Missense_Mutation_p.D16Y	NM_018257	NP_060727	Q9NV79	PCMD2_HUMAN	protein-L-isoaspartate (D-aspartate)	16						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					TGAGCTGATAGATAATTTGAA	0.378000													14	78					3.52763e-06	4.37817e-06	0.004990	1	0
Unknown	0	broad.mit.edu	37	21	9769012	9769012	+	RNA	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr21:9769012C>T	uc011abu.1	+	10		c.987C>T								Homo sapiens, clone IMAGE:4720764, mRNA.																		ACAAACGCTGCCCTTGAAAAG	0.338000													9	34					0	0	0.008291	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19775840	19775840	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr21:19775840C>T	uc002ykw.2	-	1	131	c.100G>A	c.(100-102)GGA>AGA	p.G34R		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	34	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GCAATTAATCCAGCACAGAGC	0.453000													18	55					0	0	0.007413	0	0
JAM2	58494	broad.mit.edu	37	21	27062285	27062285	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr21:27062285G>A	uc002ylp.1	+	3	786	c.241G>A	c.(241-243)GGT>AGT	p.G81S	JAM2_uc011ace.1_Missense_Mutation_p.G81S|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Intron|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Missense_Mutation_p.G81S|JAM2_uc010gli.1_Missense_Mutation_p.G81S	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	81	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						GACTCTTCAAGGTAAGCAGCT	0.443000													24	75					0	0	0.003330	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45960014	45960014	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr21:45960014G>A	uc002zfh.1	-	1	65	c.20C>T	c.(19-21)TCC>TTC	p.S7F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	7						keratin filament				skin(1)	1						GGAGCAGACGGACATGGTGGA	0.537000													19	56					0	0	0.008871	0	0
PCNT	5116	broad.mit.edu	37	21	47783511	47783511	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr21:47783511G>A	uc002zji.3	+	14	2378	c.2271G>A	c.(2269-2271)GAG>GAA	p.E757E	PCNT_uc002zjj.2_Silent_p.E639E	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	757	Glu-rich.|Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TTATGAAGGAGGAGCTACAGC	0.413000													19	47					0	0	0.007413	0	0
POTEH	23784	broad.mit.edu	37	22	16279248	16279248	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:16279248C>T	uc010gqp.2	-	4	1027	c.975G>A	c.(973-975)GTG>GTA	p.V325V	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.V44V|POTEH_uc002zlj.1_Silent_p.V160V	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	325	ANK 5.									skin(1)	1						TTAAAAATTTCACCACTTGCT	0.328000													44	609					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	22663086	22663086	+	RNA	SNP	T	G	G	rs1054157	by1000genomes	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:22663086T>G	uc011aim.1	+	29		c.1859T>G			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGCCACATAAGTTGTCCT	0.299000													3	54					0	0	0.000248	0	0
LOC96610	96610	broad.mit.edu	37	22	23077428	23077428	+	RNA	SNP	A	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:23077428A>C	uc011aim.1	+	187		c.10119A>C								Parts of antibodies, mostly variable regions.												0						CAAACTCATGATTTATGAGGT	0.577000													87	189					0	0	0.003610	0	0
SEZ6L	23544	broad.mit.edu	37	22	26702042	26702042	+	Silent	SNP	G	A	A	rs142670064		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:26702042G>A	uc003acb.2	+	6	1602	c.1446G>A	c.(1444-1446)ACG>ACA	p.T482T	SEZ6L_uc003acc.2_Silent_p.T482T|SEZ6L_uc011akc.1_Silent_p.T482T|SEZ6L_uc003acd.2_Silent_p.T482T|SEZ6L_uc011akd.1_Silent_p.T482T|SEZ6L_uc003ace.2_Silent_p.T482T|SEZ6L_uc003acf.1_Silent_p.T255T|SEZ6L_uc010gvc.1_Silent_p.T255T	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	482	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GCATCTGGACGATTGAAGCTC	0.562000													29	41					0	0	0.006320	0	0
SEC14L3	266629	broad.mit.edu	37	22	30866026	30866026	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:30866026G>A	uc003ahy.2	-	4	303	c.214C>T	c.(214-216)CTT>TTT	p.L72F	SEC14L3_uc003ahz.2_5'UTR|SEC14L3_uc003aia.2_Missense_Mutation_p.L13F|SEC14L3_uc003aib.2_Missense_Mutation_p.L13F	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	72						integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	TGCCAATCAAGGATATGGTCA	0.547000													66	166					0	0	0.003610	0	0
SSTR3	6753	broad.mit.edu	37	22	37603254	37603254	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:37603254C>T	uc003ara.2	-	2	651	c.589G>A	c.(589-591)GAG>AAG	p.E197K	SSTR3_uc003arb.2_Missense_Mutation_p.E197K	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	197	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						GCCGCCGGCTCGGGCCACTGC	0.692000													8	15					0	0	0.004482	0	0
GGA1	26088	broad.mit.edu	37	22	38010228	38010228	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:38010228C>T	uc003atc.2	+	2	440	c.75C>T	c.(73-75)CTC>CTT	p.L25L	GGA1_uc003atb.2_Silent_p.L25L|GGA1_uc003atd.2_Silent_p.L25L|GGA1_uc003ate.2_Silent_p.L25L|GGA1_uc003atf.2_5'UTR	NM_013365	NP_037497	Q9UJY5	GGA1_HUMAN	golgi associated, gamma adaptin ear containing,	25	VHS.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|Golgi apparatus part	protein binding			breast(2)|ovary(1)	3	Melanoma(58;0.0574)					ACAAGGAGCTCGACTGGGCCA	0.602000													28	64					0	0	0.002096	0	0
UPK3A	7380	broad.mit.edu	37	22	45691447	45691447	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:45691447G>A	uc003bfy.2	+	6	717	c.711G>A	c.(709-711)ATG>ATA	p.M237I	UPK3A_uc010gzy.2_Missense_Mutation_p.M116I	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	237	Cytoplasmic (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		ACAGGGACATGGGGAGTTCTG	0.552000													65	161					0	0	0.003610	0	0
MOV10L1	54456	broad.mit.edu	37	22	50555768	50555768	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr22:50555768C>T	uc003bjj.2	+	9	1525	c.1442C>T	c.(1441-1443)ACC>ATC	p.T481I	MOV10L1_uc003bjk.3_Missense_Mutation_p.T481I|MOV10L1_uc011arp.1_Missense_Mutation_p.T461I|MOV10L1_uc011arq.1_Missense_Mutation_p.T242I|MOV10L1_uc010hao.1_RNA	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	481					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		GTTGTTGTGACCGCACAGAAA	0.473000													6	32					0	0	0.001984	0	0
HRH1	3269	broad.mit.edu	37	3	11301853	11301853	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:11301853G>A	uc010hdr.2	+	2	1472	c.1130G>A	c.(1129-1131)AGG>AAG	p.R377K	HRH1_uc010hds.2_Missense_Mutation_p.R377K|HRH1_uc010hdt.2_Missense_Mutation_p.R377K|HRH1_uc003bwb.3_Missense_Mutation_p.R377K	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	377	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	GGCAAATTGAGGAGTGGGTCT	0.488000													26	22					0	0	0.003954	0	0
IQSEC1	9922	broad.mit.edu	37	3	12950932	12950932	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:12950932A>C	uc003bxt.2	-	11	2470	c.2461T>G	c.(2461-2463)TAC>GAC	p.Y821D	IQSEC1_uc003bxu.3_Missense_Mutation_p.Y699D|IQSEC1_uc011auw.1_Missense_Mutation_p.Y807D	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	821	PH.				regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						CCATTGGGGTAGTCTGCAAAA	0.537000													38	42					0	0	0.006999	0	0
TOP2B	7155	broad.mit.edu	37	3	25640942	25640942	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:25640942G>A	uc003cdj.2	-	35	4679	c.4679C>T	c.(4678-4680)TCC>TTC	p.S1560F	TOP2B_uc011awm.1_Missense_Mutation_p.S417F|TOP2B_uc010hff.1_Missense_Mutation_p.S426F	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1565					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TGTTGTTTTGGATGTTTTCCT	0.383000													12	11					0	0	0.002450	0	0
ITGA9	3680	broad.mit.edu	37	3	37574877	37574877	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:37574877T>G	uc003chd.2	+	14	1499	c.1446T>G	c.(1444-1446)TGT>TGG	p.C482W	ITGA9_uc003chc.2_Missense_Mutation_p.C482W	NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	482	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		CGCCTCAGTGTCACGACGGAC	0.552000													17	30					0	0	0.006122	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50403276	50403276	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:50403276G>A	uc003daq.2	-	34	2939	c.2901C>T	c.(2899-2901)TTC>TTT	p.F967F	CACNA2D2_uc003dap.2_Silent_p.F960F|CACNA2D2_uc003dao.2_5'Flank	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	967	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	CCAGGTTAAGGAAATCTGCAA	0.622000													8	35					0	0	0.008291	0	0
GRM2	2912	broad.mit.edu	37	3	51746528	51746528	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:51746528A>G	uc010hlv.2	+	3	729	c.490A>G	c.(490-492)AGC>GGC	p.S164G	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	164	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CCCACAGATTAGCTACGCCTC	0.537000													44	72					0	0	0.003214	0	0
C3orf64	285203	broad.mit.edu	37	3	69047162	69047162	+	Silent	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:69047162G>T	uc003dnl.2	-	10	1236	c.831C>A	c.(829-831)ACC>ACA	p.T277T	C3orf64_uc003dnj.2_5'UTR|C3orf64_uc003dnk.2_Silent_p.T277T|C3orf64_uc011bfw.1_Intron|C3orf64_uc003dnm.1_RNA	NM_173654	NP_775925	Q5NDL2	AER61_HUMAN	AER61 glycosyltransferase	277						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)	1		Lung NSC(201;0.126)		BRCA - Breast invasive adenocarcinoma(55;4.61e-05)|Epithelial(33;0.000291)|LUSC - Lung squamous cell carcinoma(21;0.0127)|KIRC - Kidney renal clear cell carcinoma(39;0.216)		TCTTACTTACGGTGTCCCACA	0.378000													5	95					3.59834e-05	4.44834e-05	0.001168	1	0
FRMD4B	23150	broad.mit.edu	37	3	69230725	69230725	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:69230725G>A	uc003dnv.2	-	21	2466	c.2176C>T	c.(2176-2178)CTC>TTC	p.L726F	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnu.2_Missense_Mutation_p.L378F|FRMD4B_uc011bga.1_Missense_Mutation_p.L570F	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	726						cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		CCGTCATCGAGGATTTCTGTG	0.522000													37	76					0	0	0.004878	0	0
EPHA3	2042	broad.mit.edu	37	3	89456425	89456425	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:89456425C>T	uc003dqy.2	+	8	1826	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	534	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		ACAGCTTTCTCCATCTCTGGT	0.368000										TSP Lung(6;0.00050)			18	28					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	3	95374249	95374249	+	RNA	SNP	A	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:95374249A>T	uc003dro.1	-	5		c.1613T>A								Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.																		GCATTCCAACAATTTTTGACC	0.468000													17	16					0	0	0.004990	0	0
EPHA6	285220	broad.mit.edu	37	3	97124098	97124098	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:97124098G>A	uc010how.1	+	6	1754	c.1711G>A	c.(1711-1713)GAG>AAG	p.E571K		NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	476	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TCTGGACTACGAGATCAAGTA	0.388000													5	20					0	0	0.001168	0	0
NFKBIZ	64332	broad.mit.edu	37	3	101574609	101574609	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:101574609C>T	uc003dvp.2	+	9	1802	c.1687C>T	c.(1687-1689)CAC>TAC	p.H563Y	NFKBIZ_uc003dvo.2_Missense_Mutation_p.H463Y|NFKBIZ_uc010hpo.2_Missense_Mutation_p.H463Y|NFKBIZ_uc003dvq.2_Missense_Mutation_p.H441Y	NM_031419	NP_113607	Q9BYH8	IKBZ_HUMAN	nuclear factor of kappa light polypeptide gene	563	Interaction with NFKB1/p50 (By similarity).|ANK 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(2)	2						AGTCATAGCCCACAATGCTGT	0.438000													11	68					0	0	0.001368	0	0
DZIP3	9666	broad.mit.edu	37	3	108363192	108363192	+	Silent	SNP	C	T	T	rs149165938		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:108363192C>T	uc003dxd.2	+	14	1745	c.1323C>T	c.(1321-1323)ACC>ACT	p.T441T	DZIP3_uc003dxf.1_Silent_p.T441T|DZIP3_uc011bhm.1_Intron|DZIP3_uc003dxe.1_Silent_p.T441T|DZIP3_uc003dxg.1_Silent_p.T164T	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	441					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						ATCTTTGGACCAATCATCCTT	0.408000													37	48					0	0	0.004878	0	0
MORC1	27136	broad.mit.edu	37	3	108688522	108688522	+	Silent	SNP	G	A	A	rs138551884		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:108688522G>A	uc003dxl.2	-	26	2685	c.2598C>T	c.(2596-2598)TTC>TTT	p.F866F	MORC1_uc011bhn.1_Silent_p.F845F	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	866					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTACCTGGTTGAAACACATTT	0.353000													25	41					0	0	0.008361	0	0
MORC1	27136	broad.mit.edu	37	3	108776192	108776192	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:108776192G>A	uc003dxl.2	-	13	1260	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S	MORC1_uc011bhn.1_Silent_p.S391S	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	391					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATACTCACAAGGACTTCAGTT	0.393000													20	55					0	0	0.002780	0	0
PLA1A	51365	broad.mit.edu	37	3	119334882	119334882	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:119334882G>A	uc003ecu.2	+	6	727	c.688G>A	c.(688-690)GGA>AGA	p.G230R	PLA1A_uc003ecv.2_Missense_Mutation_p.G214R|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Missense_Mutation_p.G57R	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	230					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GATTCCCGTTGGACATGTGGA	0.517000													13	26					0	0	0.003163	0	0
HGD	3081	broad.mit.edu	37	3	120394654	120394654	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:120394654G>A	uc003edw.2	-	2	442	c.72C>T	c.(70-72)TCC>TCT	p.S24S		NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	24					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		CTTCTGGCAGGGAACCTGGGC	0.473000													55	70					0	0	0.003610	0	0
STXBP5L	9515	broad.mit.edu	37	3	120977927	120977927	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:120977927C>T	uc003eec.3	+	18	2010	c.1870C>T	c.(1870-1872)CAA>TAA	p.Q624*	STXBP5L_uc011bji.1_Nonsense_Mutation_p.Q624*	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	624	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TCCAGGATATCAAGCAGAACT	0.373000													30	18					0	0	0.001786	0	0
PARP14	54625	broad.mit.edu	37	3	122419650	122419650	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:122419650C>G	uc003efq.3	+	6	2308	c.2249C>G	c.(2248-2250)GCC>GGC	p.A750G	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.A467G|PARP14_uc003efs.1_Missense_Mutation_p.A467G	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	750					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		AAGCCAGGAGCCAAGCAGTTC	0.428000													17	18					0	0	0.004007	0	0
SLC41A3	54946	broad.mit.edu	37	3	125741705	125741705	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:125741705G>A	uc003eij.2	-	6	895	c.669C>T	c.(667-669)CCC>CCT	p.P223P	SLC41A3_uc003eii.2_Silent_p.P197P|SLC41A3_uc003eil.2_Silent_p.P223P|SLC41A3_uc003eik.2_Silent_p.P187P|SLC41A3_uc011bkh.1_Silent_p.P106P|SLC41A3_uc010hsd.1_Silent_p.P238P	NM_001008485	NP_001008485	Q96GZ6	S41A3_HUMAN	solute carrier family 41, member 3 isoform 1	223	Helical; (Potential).					integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(114;0.167)		TGGCTGCAATGGGCGTGGCAA	0.507000													48	182					0	0	0.003610	0	0
PLXNA1	5361	broad.mit.edu	37	3	126730864	126730864	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:126730864A>C	uc003ejg.2	+	9	2111	c.2107A>C	c.(2107-2109)ACC>CCC	p.T703P		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	726	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AAAACCCATCACCCTGGCCGC	0.652000													7	63					0	0	0.004990	0	0
DNAJC13	23317	broad.mit.edu	37	3	132247127	132247127	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:132247127T>C	uc003eor.2	+	54	6541	c.6476T>C	c.(6475-6477)ATT>ACT	p.I2159T		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	2159							heat shock protein binding			ovary(1)|breast(1)	2						AAGGCTCAGATTGTTAAAGCT	0.453000													34	49					0	0	0.002836	0	0
RAB6B	51560	broad.mit.edu	37	3	133558452	133558452	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:133558452G>A	uc003epy.2	-	5	680	c.299C>T	c.(298-300)TCC>TTC	p.S100F	RAB6B_uc011blu.1_Missense_Mutation_p.S87F	NM_016577	NP_057661	Q9NRW1	RAB6B_HUMAN	RAB6B, member RAS oncogene family	100					protein transport|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle|Golgi membrane	GTP binding|GTPase activity|protein binding			pancreas(1)	1						CTGTTGGAAGGAGTTGAGATC	0.557000													25	46					0	0	0.004656	0	0
PRR23B	389151	broad.mit.edu	37	3	138739346	138739346	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:138739346G>A	uc003esy.1	-	1	423	c.158C>T	c.(157-159)GCC>GTC	p.A53V		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	53										breast(1)	1						CGCGTCCACGGCCGGGTCCCC	0.751000													4	8					0	0	0.000602	0	0
MED12L	116931	broad.mit.edu	37	3	150908586	150908586	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:150908586C>G	uc003eyp.2	+	13	1874	c.1836C>G	c.(1834-1836)TTC>TTG	p.F612L	MED12L_uc011bnz.1_Missense_Mutation_p.F472L|MED12L_uc003eyn.2_Missense_Mutation_p.F612L|MED12L_uc003eyo.2_Missense_Mutation_p.F612L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	612					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ATGATGTCTTCTCCCATGACG	0.488000													26	35					0	0	0.005443	0	0
MECOM	2122	broad.mit.edu	37	3	168807883	168807883	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:168807883C>T	uc003ffi.3	-	14	3011	c.2742G>A	c.(2740-2742)AAG>AAA	p.K914K	MECOM_uc010hwk.1_Silent_p.K928K|MECOM_uc003ffj.3_Silent_p.K979K|MECOM_uc011bpi.1_Silent_p.K906K|MECOM_uc003ffn.3_Silent_p.K914K|MECOM_uc003ffk.2_Silent_p.K905K|MECOM_uc003ffl.2_Silent_p.K1065K|MECOM_uc011bpj.1_Silent_p.K1102K|MECOM_uc011bpk.1_Silent_p.K904K	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	914	Asp/Glu-rich (acidic).				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TCACTGGTTCCTTTCCTGTTT	0.428000													49	83					0	0	0.003610	0	0
MECOM	2122	broad.mit.edu	37	3	168845762	168845762	+	Missense_Mutation	SNP	T	A	A	rs145122238		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:168845762T>A	uc003ffi.3	-	4	405	c.136A>T	c.(136-138)ACT>TCT	p.T46S	MECOM_uc010hwk.1_Missense_Mutation_p.T69S|MECOM_uc003ffj.3_Missense_Mutation_p.T110S|MECOM_uc011bpi.1_Missense_Mutation_p.T46S|MECOM_uc003ffn.3_Missense_Mutation_p.T46S|MECOM_uc003ffk.2_Missense_Mutation_p.T46S|MECOM_uc003ffl.2_Missense_Mutation_p.T206S|MECOM_uc011bpj.1_Missense_Mutation_p.T234S|MECOM_uc011bpk.1_Missense_Mutation_p.T36S|MECOM_uc010hwn.2_Missense_Mutation_p.T234S|MECOM_uc003ffm.1_Missense_Mutation_p.T110S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	46	Interaction with MAPK9, SMAD3 and probably SUV39H1.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GAGTGAGGAGTACTGCATGGA	0.433000													43	72					0	0	0.007835	0	0
CCDC39	339829	broad.mit.edu	37	3	180377473	180377473	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:180377473T>C	uc010hxe.2	-	5	716	c.601A>G	c.(601-603)AGC>GGC	p.S201G	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	201	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			ACCTGTGCGCTTATAGTCTCT	0.323000													29	43					0	0	0.001786	0	0
PARL	55486	broad.mit.edu	37	3	183551569	183551569	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:183551569G>A	uc003fmd.2	-	8	932	c.873C>T	c.(871-873)ATC>ATT	p.I291I	PARL_uc003fme.2_Silent_p.I241I	NM_018622	NP_061092	Q9H300	PARL_HUMAN	presenilin associated, rhomboid-like isoform 1	291	Mitochondrial intermembrane (Potential).				proteolysis	integral to membrane|mitochondrial inner membrane|nucleus	serine-type endopeptidase activity				0	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.21e-41)|Epithelial(37;1.34e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			TCCCTTCTGGGATCTTAGTGC	0.478000													19	67					0	0	0.002299	0	0
HRASLS	57110	broad.mit.edu	37	3	192973511	192973512	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:192973511_192973512CC>TT	uc003fta.2	+	2	477_478	c.72_73CC>TT	c.(70-75)TTCCGT>TTTTGT	p.R25C		NM_020386	NP_065119	Q9HDD0	HRSL1_HUMAN	HRAS-like suppressor	25											0	all_cancers(143;9.1e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000159)		TCGAAGTGTTCCGTCCTGGCTA	0.490000													45	149					0	0	0.004672	0	0
TM4SF19	116211	broad.mit.edu	37	3	196050869	196050869	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:196050869C>T	uc003fwj.2	-	5		c.575_splice	c.e5-1		uc003fwk.1_Missense_Mutation_p.P45L|TM4SF19_uc010iad.1_Splice_Site_p.R149_splice|TM4SF19_uc003fwl.1_Intron|TM4SF19_uc011btv.1_Intron	NM_138461		Q96DZ7	T4S19_HUMAN	transmembrane 4 L six family member 19							integral to membrane					0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;3.94e-24)|all cancers(36;4.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.53e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)		CAGATAATTCCTATCCCAAAA	0.547000													7	23					0	0	0.001984	0	0
HTT	3064	broad.mit.edu	37	4	3208296	3208296	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:3208296C>T	uc011bvq.1	+	44	5943	c.5798C>T	c.(5797-5799)TCC>TTC	p.S1933F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1931					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		ATCAGCCTTTCCCACGAGCCT	0.473000													15	32					0	0	0.003163	0	0
SLC2A9	56606	broad.mit.edu	37	4	9892272	9892272	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:9892272G>A	uc003gmc.2	-	9	1238	c.1177C>T	c.(1177-1179)CTC>TTC	p.L393F	SLC2A9_uc003gmd.2_Missense_Mutation_p.L364F	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	393	Helical; Name=9; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						CCAAAGAAGAGGCCCATGAGC	0.522000													6	28					0	0	0.001984	0	0
SLC34A2	10568	broad.mit.edu	37	4	25673285	25673285	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:25673285G>A	uc003grr.2	+	9	1071	c.990G>A	c.(988-990)ACG>ACA	p.T330T	SLC34A2_uc003grs.2_Silent_p.T329T|SLC34A2_uc010iev.2_Silent_p.T329T	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	330	Extracellular (Potential).			T -> V (in Ref. 6; BAC11354).	cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TCTGTTGGACGGATGGCATCC	0.502000													64	128					0	0	0.003610	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895515	42895515	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:42895515G>A	uc003gwt.2	+	1	232	c.232G>A	c.(232-234)GAT>AAT	p.D78N		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	78					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						GAATGACCAGGATAGCTTGCT	0.458000													41	131					0	0	0.002522	0	0
KDR	3791	broad.mit.edu	37	4	55961114	55961114	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:55961114C>T	uc003has.2	-	21	3128	c.2826G>A	c.(2824-2826)GGG>GGA	p.G942G	KDR_uc003hat.1_Silent_p.G942G	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	942	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GGAATCGTGCCCCTTTGGTCT	0.433000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			10	53					0	0	0.006214	0	0
LPHN3	23284	broad.mit.edu	37	4	62863907	62863907	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:62863907C>T	uc010ihh.2	+	18	3288	c.3115C>T	c.(3115-3117)CTT>TTT	p.L1039F	LPHN3_uc003hcq.3_Missense_Mutation_p.L1039F|LPHN3_uc003hct.2_Missense_Mutation_p.L432F	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1026	Helical; Name=5; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TGTAATCTTCCTTGGGATTGC	0.308000													9	36					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	4	69342025	69342025	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:69342025C>T	uc003hdz.3	+	7	640	c.576C>T	c.(574-576)ATC>ATT	p.I192I		NM_014058	NP_054777			transmembrane protease, serine 11E																		GTCTCAGGATCGTTGGTGGGA	0.512000													35	121					0	0	0.004878	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661150	77661150	+	Silent	SNP	T	G	G	rs143936832	byFrequency	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:77661150T>G	uc011cbx.1	+	5	2777	c.1824T>G	c.(1822-1824)GCT>GCG	p.A608A	SHROOM3_uc011cbz.1_Silent_p.A432A|SHROOM3_uc003hkf.1_Silent_p.A483A|SHROOM3_uc003hkg.2_Silent_p.A386A	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	608					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GCCCTCAGGCTCAGGCCTGGC	0.562000													32	121					0	0	0.001786	0	0
BANK1	55024	broad.mit.edu	37	4	102951268	102951268	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:102951268G>A	uc003hvy.3	+	10	2020	c.1746G>A	c.(1744-1746)GAG>GAA	p.E582E	BANK1_uc003hvx.3_Silent_p.E567E|BANK1_uc010ill.2_Silent_p.E449E|BANK1_uc003hvz.3_Silent_p.E552E	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	582					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		CTTTTGCTGAGATTGATGACA	0.299000													16	27					0	0	0.004007	0	0
GSTCD	79807	broad.mit.edu	37	4	106766676	106766676	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:106766676C>T	uc003hxz.3	+	12	1916	c.1844C>T	c.(1843-1845)TCC>TTC	p.S615F	GSTCD_uc003hxy.3_Missense_Mutation_p.S528F|GSTCD_uc011cfb.1_Missense_Mutation_p.S238F	NM_001031720	NP_001026890	Q8NEC7	GSTCD_HUMAN	glutathione S-transferase, C-terminal domain	615						cytoplasm	rRNA methyltransferase activity			breast(1)|central_nervous_system(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.15e-07)|READ - Rectum adenocarcinoma(30;0.139)		CAAGTGATATCCATGGAGCCA	0.433000													15	31					0	0	0.003163	0	0
CFI	3426	broad.mit.edu	37	4	110682768	110682768	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:110682768C>T	uc003hzr.3	-	4	771	c.563G>A	c.(562-564)GGA>GAA	p.G188E	CFI_uc003hzq.2_5'UTR|CFI_uc011cft.1_Missense_Mutation_p.G188E|CFI_uc003hzs.3_Missense_Mutation_p.G188E	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	188	SRCR.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		GGTCTCTAATCCTCGGCAATG	0.393000													21	47					0	0	0.008871	0	0
MAML3	55534	broad.mit.edu	37	4	140811906	140811906	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:140811906G>A	uc003ihz.1	-	2	1436	c.684C>T	c.(682-684)CCC>CCT	p.P228P	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	228					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					TGTTCTGCAAGGGCAAAGAAG	0.483000													15	42					0	0	0.003163	0	0
TTC29	83894	broad.mit.edu	37	4	147830247	147830248	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:147830247_147830248CC>TT	uc003ikw.3	-	5	557_558	c.330_331GG>AA	c.(328-333)CTGGAG>CTAAAG	p.E111K	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Missense_Mutation_p.E137K|TTC29_uc010ipd.1_Missense_Mutation_p.E111K	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	111							binding				0	all_hematologic(180;0.151)					GGCTGCTCCTCCAGGGGCTTCT	0.574000													24	66					0	0	0.004672	0	0
NPY2R	4887	broad.mit.edu	37	4	156135446	156135446	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:156135446G>A	uc003ioq.2	+	2	850	c.355G>A	c.(355-357)GGT>AGT	p.G119S	NPY2R_uc003ior.2_Missense_Mutation_p.G119S	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	119	Extracellular (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GTGGAAAATGGGTCCTGTCCT	0.512000													3	30					0	0	0.004672	0	0
DDX60	55601	broad.mit.edu	37	4	169229235	169229235	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:169229235G>A	uc003irp.2	-	4	478	c.186C>T	c.(184-186)CTC>CTT	p.L62L		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	62							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		AGAAGAAATGGAGGTTCTGCC	0.343000													17	78					0	0	0.007413	0	0
DDX60L	91351	broad.mit.edu	37	4	169343713	169343713	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:169343713C>T	uc003irq.3	-	16	2427	c.2206G>A	c.(2206-2208)GAT>AAT	p.D736N	DDX60L_uc003irr.1_Missense_Mutation_p.D736N|DDX60L_uc003irs.1_Missense_Mutation_p.D463N	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	736							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		ACCCTGGGATCCCGATCTTTT	0.388000													4	14					0	0	0.000602	0	0
ODZ3	55714	broad.mit.edu	37	4	183676186	183676186	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:183676186G>T	uc003ivd.1	+	21	4703	c.4666G>T	c.(4666-4668)GTG>TTG	p.V1556L	ODZ3_uc003ive.1_Missense_Mutation_p.V969L	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1556	YD 2.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TATTACTGCTGTGACAGACAG	0.408000													9	32					7.48243e-07	9.32334e-07	0.006214	1	0
ACSL1	2180	broad.mit.edu	37	4	185684408	185684408	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr4:185684408G>A	uc003iww.2	-	16	1728	c.1434C>T	c.(1432-1434)GGC>GGT	p.G478G	ACSL1_uc011ckm.1_Silent_p.G307G|ACSL1_uc003iwt.1_Silent_p.G478G|ACSL1_uc003iwu.1_Silent_p.G478G|ACSL1_uc011ckn.1_Silent_p.G444G|ACSL1_uc003iws.1_Silent_p.G48G	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	478	Cytoplasmic (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CCCCAACATGGCCTGTATATT	0.428000													8	25					0	0	0.006214	0	0
CEP72	55722	broad.mit.edu	37	5	620264	620264	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:620264C>T	uc003jbf.2	+	3	363	c.291C>T	c.(289-291)CTC>CTT	p.L97L	CEP72_uc011clz.1_RNA	NM_018140	NP_060610	Q9P209	CEP72_HUMAN	centrosomal protein 72 kDa	97	LRR 3.				G2/M transition of mitotic cell cycle|gamma-tubulin complex localization|spindle organization	centrosome|cytosol				ovary(1)	1			Epithelial(17;0.000339)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|Lung(60;0.0863)			TGTTTCGGCTCCACGCCTTAA	0.532000													8	46					0	0	0.004482	0	0
DNAH5	1767	broad.mit.edu	37	5	13814899	13814899	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:13814899G>A	uc003jfd.2	-	43	7087	c.7045C>T	c.(7045-7047)CTG>TTG	p.L2349L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2349	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACAGAATTCAGATTTTCAATC	0.393000									Kartagener_syndrome				11	35					0	0	0.001368	0	0
TTC23L	153657	broad.mit.edu	37	5	34880300	34880300	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:34880300T>C	uc003jiu.2	+	9	1067	c.964T>C	c.(964-966)TAT>CAT	p.Y322H	TTC23L_uc010iut.1_Silent_p.Y92Y	NM_144725	NP_653326	Q6PF05	TT23L_HUMAN	tetratricopeptide repeat domain 23-like	322							binding			central_nervous_system(1)	1						TGTTGAGATATATTTCATAAG	0.348000													13	32					0	0	0.001368	0	0
RANBP3L	202151	broad.mit.edu	37	5	36253797	36253797	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:36253797T>C	uc003jkh.2	-	12	1612	c.1119A>G	c.(1117-1119)ATA>ATG	p.I373M	RANBP3L_uc011cow.1_Missense_Mutation_p.I398M	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	373	RanBD1.				intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			CAGTAGCTGTTATTCGTACAT	0.348000													23	57					0	0	0.001882	0	0
DEPDC1B	55789	broad.mit.edu	37	5	59943270	59943270	+	Silent	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:59943270T>C	uc003jsh.2	-	3	478	c.405A>G	c.(403-405)CCA>CCG	p.P135P	DEPDC1B_uc011cqm.1_Silent_p.P135P|DEPDC1B_uc011cqn.1_Silent_p.P108P	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	135					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				AAGTGCCTGGTGGGAGATCAT	0.463000													3	63					0	0	0.000248	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60369027	60369027	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:60369027C>T	uc003jsp.3	+	2	330	c.203C>T	c.(202-204)CCA>CTA	p.P68L	NDUFAF2_uc003jso.3_Intron	NM_174889	NP_777549	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	68						membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				GGGGATATTCCAACAGAATGG	0.313000													37	115					0	0	0.006999	0	0
MAST4	375449	broad.mit.edu	37	5	66416869	66416869	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:66416869C>T	uc003jut.1	+	13	1185	c.1117C>T	c.(1117-1119)CGA>TGA	p.R373*	MAST4_uc003juu.1_Nonsense_Mutation_p.R383*|MAST4_uc011cra.1_Nonsense_Mutation_p.R356*|MAST4_uc003juv.2_Nonsense_Mutation_p.R368*|MAST4_uc003juw.2_Nonsense_Mutation_p.R368*	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	565						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCTGAAACTTCGAAGGAAACC	0.313000													4	14					0	0	0.000602	0	0
MAST4	375449	broad.mit.edu	37	5	66461599	66461600	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:66461599_66461600CC>TT	uc003jut.1	+	28	6093_6094	c.6025_6026CC>TT	c.(6025-6027)CCT>TTT	p.P2009F	MAST4_uc003juw.2_Missense_Mutation_p.P1937F|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	2201	Pro-rich.		P -> L.			cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCGGCCTGGCCCTGACCCGGGC	0.658000													4	5					0	0	0.004672	0	0
RAD17	5884	broad.mit.edu	37	5	68695977	68695977	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:68695977C>T	uc003jwo.2	+	14	1769	c.1707C>T	c.(1705-1707)ACC>ACT	p.T569T	RAD17_uc003jwg.2_Silent_p.T558T|RAD17_uc003jwh.2_Silent_p.T558T|RAD17_uc003jwi.2_Silent_p.T558T|RAD17_uc003jwj.2_Silent_p.T558T|RAD17_uc003jwk.2_Silent_p.T558T|RAD17_uc003jwl.2_Silent_p.T558T|RAD17_uc003jwm.2_Silent_p.T393T|RAD17_uc003jwn.2_Silent_p.T472T|RAD17_uc003jwp.2_Silent_p.T129T	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	569	Interaction with MCM7.				cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		CTCTACTAACCATTCCAATGA	0.284000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					7	25					0	0	0.004482	0	0
SNCAIP	9627	broad.mit.edu	37	5	121787024	121787024	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:121787024C>T	uc003ksw.1	+	10	2688	c.2482C>T	c.(2482-2484)CCT>TCT	p.P828S	SNCAIP_uc011cwl.1_Missense_Mutation_p.P386S|SNCAIP_uc003ksx.1_Missense_Mutation_p.P875S|SNCAIP_uc003ksy.1_Missense_Mutation_p.P462S|SNCAIP_uc003ksz.1_Missense_Mutation_p.P462S|SNCAIP_uc010jcu.2_Missense_Mutation_p.P424S|SNCAIP_uc011cwm.1_Missense_Mutation_p.P462S|SNCAIP_uc003kta.1_Missense_Mutation_p.P460S|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.P522S|SNCAIP_uc010jcx.1_Missense_Mutation_p.P768S|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.P344S	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	828					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GATGGAGCAGCCTAGCCTTGA	0.493000													18	47					0	0	0.007413	0	0
C5orf48	389320	broad.mit.edu	37	5	125971803	125971803	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:125971803G>A	uc003kub.1	+	3	288	c.275G>A	c.(274-276)GGG>GAG	p.G92E		NM_207408	NP_997291	Q6ZNM6	CE048_HUMAN	hypothetical protein LOC389320	92										ovary(1)	1						CTTTGCCATGGGGAAGATCGT	0.423000													26	93					0	0	0.005443	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128864234	128864234	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:128864234C>T	uc003kvb.1	+	6	1174	c.1174C>T	c.(1174-1176)CAT>TAT	p.H392Y	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	392	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TATTGGGCATCATGGAGAAAA	0.308000													13	27					0	0	0.003163	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130764859	130764859	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:130764859G>A	uc003kvn.1	-	27	4722	c.4516C>T	c.(4516-4518)CCC>TCC	p.P1506S	RAPGEF6_uc003kvp.1_Missense_Mutation_p.P1556S|RAPGEF6_uc003kvo.1_Intron|RAPGEF6_uc010jdi.1_Missense_Mutation_p.P1514S|RAPGEF6_uc010jdj.1_Intron|RAPGEF6_uc003kvm.1_Missense_Mutation_p.P429S	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1506					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		GGAGGAGTGGGAGGTGGCTCC	0.448000													22	45					0	0	0.005443	0	0
SLC4A9	83697	broad.mit.edu	37	5	139742515	139742515	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:139742515C>T	uc003lfm.2	+	7	933	c.898C>T	c.(898-900)CGT>TGT	p.R300C	SLC4A9_uc003lfj.2_Missense_Mutation_p.R276C|SLC4A9_uc011czg.1_Missense_Mutation_p.R276C|SLC4A9_uc003lfl.2_Missense_Mutation_p.R276C|SLC4A9_uc003lfk.2_Missense_Mutation_p.R276C	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	300	Cytoplasmic (Potential).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGTCAGTTCGTCGGGCCAG	0.542000											OREG0016461	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	94					0	0	0.003755	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182108	140182108	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:140182108C>T	uc003lhf.2	+	1	1326	c.1326C>T	c.(1324-1326)TCC>TCT	p.S442S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.S442S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	442	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGCGTGTCCGTGGAGGTGG	0.652000													23	84					0	0	0.002780	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203547	140203547	+	Silent	SNP	C	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:140203547C>G	uc003lhl.2	+	1	2187	c.2187C>G	c.(2185-2187)GCC>GCG	p.A729A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.A729A|PCDHA5_uc003lhj.1_Silent_p.A729A	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	729	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACCGAGGCCGTGTGCACAC	0.662000													3	45					0	0	0.004672	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255408	140255408	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:140255408C>T	uc003lic.2	+	1	478	c.351C>T	c.(349-351)TTC>TTT	p.F117F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.F117F	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTTTTCCATGTGGACG	0.562000													32	122					0	0	0.003271	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140802161	140802161	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:140802161C>T	uc003lkq.1	+	1	1625	c.1367C>T	c.(1366-1368)TCC>TTC	p.S456F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.S456F|PCDHGA11_uc003lkp.1_Missense_Mutation_p.S456F	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	456	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTCCTCACTCCTCTTACTCT	0.547000													28	99					0	0	0.008361	0	0
PDGFRB	5159	broad.mit.edu	37	5	149511644	149511644	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:149511644G>A	uc003lro.2	-	8	1610	c.1141C>T	c.(1141-1143)CTG>TTG	p.L381L	PDGFRB_uc010jhd.2_Silent_p.L220L	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	381	Ig-like C2-type 4.|Extracellular (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ACCAGTGTCAGCTCTGACACA	0.393000			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								17	42					0	0	0.004990	0	0
SYNPO	11346	broad.mit.edu	37	5	150027788	150027788	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:150027788C>T	uc003lsn.2	+	3	1057	c.683C>T	c.(682-684)CCA>CTA	p.P228L	SYNPO_uc003lso.3_5'UTR|SYNPO_uc003lsp.2_5'UTR	NM_001109974	NP_001103444	Q8N3V7	SYNPO_HUMAN	synaptopodin isoform B	228					positive regulation of actin filament bundle assembly|regulation of stress fiber assembly	actin cytoskeleton|cytoplasm|dendritic spine|perikaryon|postsynaptic density|postsynaptic membrane|tight junction	actin binding|protein binding			large_intestine(1)	1		Medulloblastoma(196;0.134)|all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCAGGCCCTCCACGGCACCCC	0.677000													5	16					0	0	0.000602	0	0
C5orf40	408263	broad.mit.edu	37	5	156770010	156770010	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:156770010G>A	uc003lwu.2	-	2	723	c.535C>T	c.(535-537)CCC>TCC	p.P179S	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	179						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCCACCAGGGGGAGCCCCTGC	0.622000											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	74					0	0	0.002780	0	0
ODZ2	57451	broad.mit.edu	37	5	167642052	167642052	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:167642052C>T	uc010jjd.2	+	21	3826	c.3826C>T	c.(3826-3828)CCA>TCA	p.P1276S	ODZ2_uc003lzr.3_Missense_Mutation_p.P1046S|ODZ2_uc003lzt.3_Missense_Mutation_p.P649S|ODZ2_uc010jje.2_Missense_Mutation_p.P540S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AAGCAACAACCCAGCACACAA	0.517000													4	22					0	0	0.000248	0	0
SLIT3	6586	broad.mit.edu	37	5	168098445	168098445	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr5:168098445C>T	uc003mab.2	-	34	4305	c.3885G>A	c.(3883-3885)ACG>ACA	p.T1295T	SLIT3_uc010jjg.2_Silent_p.T1302T	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1295	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GAGGCCGGTCCGTGCCCTGGC	0.667000													7	19					0	0	0.001984	0	0
DTNBP1	84062	broad.mit.edu	37	6	15533539	15533539	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:15533539T>A	uc003nbm.2	-	8	770	c.599A>T	c.(598-600)GAG>GTG	p.E200V	DTNBP1_uc003nbl.2_Missense_Mutation_p.E119V|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA|DTNBP1_uc003nbp.2_Missense_Mutation_p.E200V|DTNBP1_uc010jph.2_Missense_Mutation_p.E187V	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	200	Dysbindin.				actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			GAAGGCTTCCTCAAAAAACTT	0.577000									Hermansky-Pudlak_syndrome				65	56					0	0	0.003610	0	0
SLC17A2	10246	broad.mit.edu	37	6	25926018	25926018	+	Missense_Mutation	SNP	C	T	T	rs141137330		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:25926018C>T	uc011dkb.1	-	1	90	c.7G>A	c.(7-9)GGG>AGG	p.G3R	SLC17A2_uc011dkc.1_Missense_Mutation_p.G3R|SLC17A2_uc003nfl.2_Missense_Mutation_p.G3R			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	3					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						GCAGGCTTCCCGTCCATTTAG	0.458000													78	109					0	0	0.003610	0	0
BAT2	7916	broad.mit.edu	37	6	31593915	31593915	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:31593915C>T	uc003nvb.3	+	9	1207	c.958C>T	c.(958-960)CAG>TAG	p.Q320*	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Nonsense_Mutation_p.Q320*|BAT2_uc003nve.2_3'UTR	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	320	1-3.|4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						TCAGTTGGATCAGGAGAATGA	0.453000													17	21					0	0	0.006122	0	0
KIF6	221458	broad.mit.edu	37	6	39512353	39512353	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:39512353C>T	uc003oot.2	-	12	1499	c.1404G>A	c.(1402-1404)CTG>CTA	p.L468L	KIF6_uc010jxa.1_Silent_p.L259L|KIF6_uc011dua.1_Silent_p.L468L|KIF6_uc010jxb.1_Silent_p.L468L	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	468	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						CTCTCTGTTTCAGAATATCTC	0.378000													18	24					0	0	0.007413	0	0
CUL9	23113	broad.mit.edu	37	6	43188593	43188593	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:43188593G>C	uc003ouk.2	+	33	6607	c.6532G>C	c.(6532-6534)GGG>CGG	p.G2178R	CUL9_uc003oul.2_Missense_Mutation_p.G2150R|CUL9_uc010jyk.2_Missense_Mutation_p.G1330R|CUL9_uc003oun.2_5'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	2178	IBR-type.				ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CCTGGGCTGTGGGACCACCTG	0.652000													5	10					0	0	0.001984	0	0
CD2AP	23607	broad.mit.edu	37	6	47576933	47576933	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:47576933C>T	uc003oyw.2	+	16	2163	c.1707C>T	c.(1705-1707)ATC>ATT	p.I569I		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	569					cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			CATTAGAAATCAAAGCTAAAG	0.353000													25	28					0	0	0.002780	0	0
FAM83B	222584	broad.mit.edu	37	6	54806762	54806762	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:54806762G>A	uc003pck.2	+	5	3109	c.2993G>A	c.(2992-2994)GGA>GAA	p.G998E		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	998										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AAGTTTCGAGGATTTATGCAA	0.348000													8	9					0	0	0.003080	0	0
DST	667	broad.mit.edu	37	6	56327921	56327921	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:56327921G>A	uc003pdf.2	-	95	16592	c.16564C>T	c.(16564-16566)CCA>TCA	p.P5522S	DST_uc003pcz.3_Missense_Mutation_p.P5344S|DST_uc011dxj.1_Missense_Mutation_p.P5373S|DST_uc011dxk.1_Missense_Mutation_p.P5384S|DST_uc003pcy.3_Missense_Mutation_p.P5018S|DST_uc003pcv.3_Missense_Mutation_p.P140S|DST_uc003pcw.3_Missense_Mutation_p.P101S|DST_uc003pcx.3_Intron	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			GTCAACCATGGTTTACCATAA	0.418000													25	34					0	0	0.006320	0	0
RIMS1	22999	broad.mit.edu	37	6	72596778	72596778	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:72596778C>T	uc003pga.2	+	1	129	c.52C>T	c.(52-54)CCC>TCC	p.P18S		NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	18					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GGTGCCTCCCCCCATGCAAGA	0.632000													4	18					0	0	0.000248	0	0
PRSS35	167681	broad.mit.edu	37	6	84233463	84233463	+	Silent	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:84233463A>G	uc003pjz.2	+	2	466	c.303A>G	c.(301-303)CAA>CAG	p.Q101Q	PRSS35_uc010kbm.2_Silent_p.Q101Q	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	101					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		TGAAAGTTCAAGATTTGGTTC	0.458000													39	30					0	0	0.004289	0	0
ROS1	6098	broad.mit.edu	37	6	117678018	117678018	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:117678018G>A	uc003pxp.1	-	25	4114	c.3915C>T	c.(3913-3915)ATC>ATT	p.I1305I	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1305	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AGGTGTGACTGATAATACTGT	0.383000			T	GOPC|ROS1	glioblastoma|NSCLC								18	23					0	0	0.002299	0	0
FABP7	2173	broad.mit.edu	37	6	123101437	123101437	+	Silent	SNP	C	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:123101437C>A	uc003pzf.2	+	2	369	c.75C>A	c.(73-75)GGC>GGA	p.G25G	FABP7_uc003pzd.2_Silent_p.G25G|FABP7_uc003pze.1_Silent_p.G25G	NM_001446	NP_001437	O15540	FABP7_HUMAN	fatty acid binding protein 7, brain	25					negative regulation of cell proliferation	cytoplasm	lipid binding|transporter activity				0				GBM - Glioblastoma multiforme(226;0.226)	Alpha-Linolenic Acid(DB00132)|gamma-Homolinolenic acid(DB00154)|Icosapent(DB00159)	CTATTTTAGGCGTGGGCTTTG	0.448000													21	27					2.21704e-12	2.8014e-12	0.002780	1	0
SMPDL3A	10924	broad.mit.edu	37	6	123118096	123118096	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:123118096C>T	uc003pzg.2	+	3	975	c.454C>T	c.(454-456)CAT>TAT	p.H152Y	SMPDL3A_uc003pzh.2_Missense_Mutation_p.H21Y	NM_006714	NP_006705	Q92484	ASM3A_HUMAN	acid sphingomyelinase-like phosphodiesterase 3A	152					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|protein binding|sphingomyelin phosphodiesterase activity				0				GBM - Glioblastoma multiforme(226;0.236)		GCTGGGTAATCATGACTATTG	0.368000													22	28					0	0	0.004656	0	0
PTPRK	5796	broad.mit.edu	37	6	128294823	128294823	+	Silent	SNP	C	T	T	rs138416879		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:128294823C>T	uc003qbk.2	-	28	4483	c.4116G>A	c.(4114-4116)ACG>ACA	p.T1372T	PTPRK_uc003qbj.2_Silent_p.T1373T|PTPRK_uc010kfc.2_Silent_p.T1379T|PTPRK_uc011ebu.1_Silent_p.T1395T	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1372	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AGTGGATAATCGTCCGGCCTT	0.483000													45	56					0	0	0.003610	0	0
ENPP3	5169	broad.mit.edu	37	6	131958601	131958601	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:131958601T>A	uc003qcu.3	+	2	424	c.77T>A	c.(76-78)ATT>AAT	p.I26N	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_5'UTR|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.I26N	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	26	Helical; Signal-anchor for type II membrane protein; (Potential).				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		ATAGCTTGCATTGTAAGTACA	0.313000													28	23					0	0	0.005443	0	0
SYNE1	23345	broad.mit.edu	37	6	152652612	152652612	+	Missense_Mutation	SNP	G	A	A	rs139490297		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:152652612G>A	uc010kiw.2	-	78	13810	c.13208C>T	c.(13207-13209)TCG>TTG	p.S4403L	SYNE1_uc003qot.3_Missense_Mutation_p.S4332L|SYNE1_uc003qou.3_Missense_Mutation_p.S4403L|SYNE1_uc010kiz.2_Missense_Mutation_p.S158L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4403	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTTTATAAGCGATTTCAGGAG	0.522000										HNSCC(10;0.0054)			36	21					0	0	0.003755	0	0
TIAM2	26230	broad.mit.edu	37	6	155451385	155451385	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr6:155451385C>T	uc003qqb.2	+	6	2301	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	TIAM2_uc003qqe.2_Missense_Mutation_p.S343F	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	343					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GATGTGCCCTCCAGAGTGGCA	0.562000													27	32					0	0	0.008361	0	0
SDK1	221935	broad.mit.edu	37	7	4247841	4247841	+	Silent	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:4247841G>T	uc003smx.2	+	37	5464	c.5325G>T	c.(5323-5325)CTG>CTT	p.L1775L	SDK1_uc010kso.2_Silent_p.L1031L|SDK1_uc003smy.2_Silent_p.L262L	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1775	Fibronectin type-III 11.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CCAAGTACCTGGTCAGCATAT	0.602000													6	38					7.48243e-07	9.32334e-07	0.006214	1	0
ZNF12	7559	broad.mit.edu	37	7	6731272	6731272	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:6731272T>C	uc003sqt.1	-	5	1855	c.1301A>G	c.(1300-1302)GAG>GGG	p.E434G	ZNF12_uc011jxa.1_Missense_Mutation_p.E272G|ZNF12_uc003sqs.1_Missense_Mutation_p.E396G	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	434					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		ATACGGTTTCTCTCCTGTGTG	0.428000													20	26					0	0	0.007413	0	0
MGC87042	256227	broad.mit.edu	37	7	22532979	22532979	+	Silent	SNP	G	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:22532979G>C	uc003svh.2	-	3	601	c.504C>G	c.(502-504)TCC>TCG	p.S168S	MGC87042_uc010kum.1_Silent_p.S187S			Q6NZ63	STEAL_HUMAN	SubName: Full=cDNA FLJ60218, highly similar to Six transmembrane epithelial antigen ofprostate 1;	168						integral to membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0						TGTATCTGTAGGATCGCCTCA	0.368000													9	29					0	0	0.006214	0	0
CLK2P	1197	broad.mit.edu	37	7	23625422	23625422	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:23625422G>A	uc003swk.2	-	1	725	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						TGTCTTTGAGGAAATCGAAGG	0.532000													23	30					0	0	0.002299	0	0
HOXA2	3199	broad.mit.edu	37	7	27140593	27140593	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:27140593G>A	uc003syh.2	-	2	1158	c.883C>T	c.(883-885)CCC>TCC	p.P295S		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	295						nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						AAGCAGTTGGGAACAGTGGGT	0.493000													50	93					0	0	0.003610	0	0
PDE1C	5137	broad.mit.edu	37	7	32109987	32109987	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:32109987C>T	uc003tcm.1	-	1	488	c.19G>A	c.(19-21)GAG>AAG	p.E7K	PDE1C_uc003tcn.1_Missense_Mutation_p.E7K|PDE1C_uc003tco.1_Intron|PDE1C_uc003tcr.2_Missense_Mutation_p.E7K|PDE1C_uc003tcs.2_Missense_Mutation_p.E7K	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	7					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TCTTCAATCTCCTTGGTTGGC	0.537000													37	86					0	0	0.003755	0	0
HECW1	23072	broad.mit.edu	37	7	43484697	43484697	+	Silent	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:43484697T>C	uc003tid.1	+	11	2531	c.1926T>C	c.(1924-1926)AAT>AAC	p.N642N	HECW1_uc011kbi.1_Silent_p.N642N	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	642					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GCCTGGCCAATGGCGCGGCCC	0.711000													11	18					0	0	0.001368	0	0
URGCP	55665	broad.mit.edu	37	7	43917430	43917431	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:43917430_43917431GG>AA	uc003tiw.2	-	6	1688_1689	c.1631_1632CC>TT	c.(1630-1632)CCC>CTT	p.P544L	URGCP_uc003tiu.2_Missense_Mutation_p.P501L|URGCP_uc003tiv.2_Missense_Mutation_p.P469L|URGCP_uc003tix.2_Missense_Mutation_p.P535L|URGCP_uc003tiy.2_Missense_Mutation_p.P501L|URGCP_uc003tiz.2_Missense_Mutation_p.P501L|URGCP_uc011kbj.1_Missense_Mutation_p.P501L	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	544				P -> S (in Ref. 1; AAL83710).	cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						CCCCCGAGGAGGGATCATGGCC	0.634000													14	42					0	0	0.004672	0	0
POM121L12	285877	broad.mit.edu	37	7	53103940	53103940	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:53103940C>T	uc003tpz.2	+	1	592	c.576C>T	c.(574-576)TTC>TTT	p.F192F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	192											0						GCGCTAGGTTCGACGGGCCGT	0.587000													29	59					0	0	0.002445	0	0
ZNF273	10793	broad.mit.edu	37	7	64389161	64389161	+	Silent	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:64389161T>C	uc003tto.2	+	4	1531	c.1455T>C	c.(1453-1455)CCT>CCC	p.P485P	ZNF273_uc003ttl.2_Silent_p.P420P|ZNF273_uc003ttn.2_Silent_p.P420P	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	485					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				GAGAGAAACCTTACAAATGCA	0.388000													3	73					0	0	0.004672	0	0
PCLO	27445	broad.mit.edu	37	7	82545198	82545198	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:82545198T>C	uc003uhx.2	-	7	12393	c.12104A>G	c.(12103-12105)TAT>TGT	p.Y4035C	PCLO_uc003uhv.2_Missense_Mutation_p.Y4035C|PCLO_uc010lec.2_Missense_Mutation_p.Y1000C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3966					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AATATCTGCATAGAAAGAATC	0.403000													39	77					0	0	0.004289	0	0
PCLO	27445	broad.mit.edu	37	7	82584073	82584073	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:82584073C>T	uc003uhx.2	-	5	6485	c.6196G>A	c.(6196-6198)GAA>AAA	p.E2066K	PCLO_uc003uhv.2_Missense_Mutation_p.E2066K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1997					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATAAGTTCTTCATAGGCAGCA	0.453000													28	69					0	0	0.002096	0	0
PCLO	27445	broad.mit.edu	37	7	82595691	82595691	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:82595691G>A	uc003uhx.2	-	4	3702	c.3413C>T	c.(3412-3414)CCT>CTT	p.P1138L	PCLO_uc003uhv.2_Missense_Mutation_p.P1138L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1077					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTAGGAACAGGCATAGGAGA	0.428000													32	69					0	0	0.002096	0	0
PCLO	27445	broad.mit.edu	37	7	82764399	82764399	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:82764399G>A	uc003uhx.2	-	3	2756	c.2467C>T	c.(2467-2469)CGA>TGA	p.R823*	PCLO_uc003uhv.2_Nonsense_Mutation_p.R823*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	769	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATGCAGGTCGAGGTATGGCT	0.438000													80	154					0	0	0.003610	0	0
GATAD1	57798	broad.mit.edu	37	7	92080050	92080050	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:92080050C>T	uc003ulx.1	+	3	690	c.411C>T	c.(409-411)ATC>ATT	p.I137I	GATAD1_uc011khq.1_RNA	NM_021167	NP_066990	Q8WUU5	GATD1_HUMAN	GATA zinc finger domain containing 1	137							sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(62;1.63e-10)|all_epithelial(64;8.33e-10)|Breast(17;0.00311)|all_lung(186;0.0498)|Lung NSC(181;0.0676)		STAD - Stomach adenocarcinoma(171;4.51e-05)|GBM - Glioblastoma multiforme(5;8.83e-05)|all cancers(6;0.000136)|Lung(22;0.123)|Epithelial(20;0.179)|LUSC - Lung squamous cell carcinoma(200;0.225)			CCACTATAATCACTGCAGAAT	0.388000													15	39					0	0	0.007413	0	0
CYP3A4	1576	broad.mit.edu	37	7	99375658	99375658	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:99375658C>T	uc003urv.1	-	3	315	c.211G>A	c.(211-213)GTG>ATG	p.V71M	CYP3A4_uc003urw.1_Missense_Mutation_p.V71M|CYP3A4_uc011kiz.1_Missense_Mutation_p.V71M|CYP3A4_uc011kja.1_Intron|CYP3A4_uc011kjb.1_Intron	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	71					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	CACCCCCACACTTTTCCATAC	0.383000													20	30					0	0	0.003954	0	0
MCM7	4176	broad.mit.edu	37	7	99693042	99693042	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:99693042G>A	uc003usw.1	-	12	2157	c.1647C>T	c.(1645-1647)TCC>TCT	p.S549S	MCM7_uc003usv.1_Silent_p.S373S|MCM7_uc003usx.1_Silent_p.S373S|uc003usy.1_5'Flank|MIR25_hsa-mir-25|MI0000082_5'Flank|uc003usz.1_5'Flank|MIR93_hsa-mir-93|MI0000095_5'Flank|uc003uta.1_5'Flank|MIR106B_hsa-mir-106b|MI0000734_5'Flank	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	549	Interaction with RAD17.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	GTTCAAACTGGGAGGGGGGCT	0.587000													18	24					0	0	0.008871	0	0
EPO	2056	broad.mit.edu	37	7	100320703	100320703	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:100320703C>T	uc003uwi.2	+	5	710	c.529C>T	c.(529-531)CGG>TGG	p.R177W	EPO_uc011kkc.1_Missense_Mutation_p.R176W	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	177					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	CAATTTCCTCCGGGGAAAGCT	0.572000													56	105					0	0	0.003610	0	0
C7orf58	79974	broad.mit.edu	37	7	120935499	120935499	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:120935499G>A	uc003vjq.3	+	23	3321	c.2874G>A	c.(2872-2874)GTG>GTA	p.V958V		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	958						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TACAGGTAGTGAAATCAAAGT	0.328000													5	8					0	0	0.000602	0	0
POT1	25913	broad.mit.edu	37	7	124469334	124469334	+	Missense_Mutation	SNP	G	A	A	rs139388603		TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:124469334G>A	uc003vlm.2	-	16	2169	c.1568C>T	c.(1567-1569)TCG>TTG	p.S523L	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.S392L|POT1_uc003vln.2_Intron	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	523					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						AGGAATCCACGATGTTTTATC	0.308000													40	95					0	0	0.003610	0	0
CNOT4	4850	broad.mit.edu	37	7	135099148	135099148	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:135099148G>A	uc003vsv.1	-	5	800	c.493C>T	c.(493-495)CGG>TGG	p.R165W	CNOT4_uc003vss.2_Missense_Mutation_p.R165W|CNOT4_uc011kpz.1_Missense_Mutation_p.R165W|CNOT4_uc003vst.2_Missense_Mutation_p.R165W|CNOT4_uc003vsu.1_Missense_Mutation_p.R165W|CNOT4_uc011kpy.1_Missense_Mutation_p.R165W	NM_001008225	NP_001008226	O95628	CNOT4_HUMAN	CCR4-NOT transcription complex, subunit 4	165	RRM.				nuclear-transcribed mRNA poly(A) tail shortening|protein autoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	nucleotide binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding				0						TCTTCTGACCGGATATAGGTT	0.353000													5	244					0	0	0.001168	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				30	54					0	0	0.008361	0	0
EPHB6	2051	broad.mit.edu	37	7	142563272	142563272	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:142563272C>T	uc011kst.1	+	8	1776	c.989C>T	c.(988-990)CCC>CTC	p.P330L	EPHB6_uc011ksu.1_Missense_Mutation_p.P330L|EPHB6_uc003wbs.2_Missense_Mutation_p.P38L|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Missense_Mutation_p.P38L|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	330	Extracellular (Potential).|Cys-rich.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGGAATGCTCCCTGCTCACCA	0.662000													15	29					0	0	0.004007	0	0
KEL	3792	broad.mit.edu	37	7	142658181	142658181	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:142658181C>T	uc003wcb.2	-	4	444	c.234G>A	c.(232-234)GAG>GAA	p.E78E		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	78	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					ACACAGATGTCTCACAGGGGC	0.552000													9	59					0	0	0.004482	0	0
FAM131B	9715	broad.mit.edu	37	7	143054391	143054391	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:143054391C>T	uc003wct.2	-	5	2214	c.508G>A	c.(508-510)GAA>AAA	p.E170K	FAM131B_uc010loz.2_Missense_Mutation_p.E138K|FAM131B_uc003wcu.3_Missense_Mutation_p.E170K|FAM131B_uc010lpa.2_Missense_Mutation_p.E198K	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	170											0	Melanoma(164;0.205)					TCCATCAGTTCCTGGTAGTTG	0.542000													61	120					0	0	0.003610	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325570	150325570	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:150325570C>T	uc003whn.2	-	3	540	c.116G>A	c.(115-117)AGG>AAG	p.R39K	GIMAP6_uc003whm.2_Intron	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	39							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTCAGTCTCCTTGGGGTCTT	0.517000													132	285					0	0	0.003610	0	0
PAXIP1	22976	broad.mit.edu	37	7	154754118	154754118	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:154754118G>A	uc003wlp.2	-	10	2083	c.2040C>T	c.(2038-2040)GTC>GTT	p.V680V	PAXIP1_uc003wlq.1_Silent_p.V646V|PAXIP1_uc011kvs.1_Silent_p.V644V	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	PAX interacting protein 1	680	Interaction with TP53BP1.|BRCT 3.				DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		TCTTCTTTAAGACTGTGTTTA	0.438000													24	53					0	0	0.003330	0	0
PTPRN2	5799	broad.mit.edu	37	7	157903556	157903556	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:157903556G>A	uc003wno.2	-	10	1729	c.1608C>T	c.(1606-1608)CTC>CTT	p.L536L	PTPRN2_uc003wnp.2_Silent_p.L519L|PTPRN2_uc003wnq.2_Intron|PTPRN2_uc003wnr.2_Silent_p.L498L|PTPRN2_uc011kwa.1_Silent_p.L559L	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	536	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GCACCTGCAGGAGGCGGGCGA	0.662000													7	9					0	0	0.003080	0	0
ZNF596	169270	broad.mit.edu	37	8	195641	195641	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:195641A>G	uc003wot.2	+	6	1082	c.794A>G	c.(793-795)AAC>AGC	p.N265S	ZNF596_uc003wou.2_Missense_Mutation_p.N164S|ZNF596_uc003wov.2_Missense_Mutation_p.N265S|ZNF596_uc003wow.2_Missense_Mutation_p.N265S	NM_173539	NP_775810	Q8TC21	ZN596_HUMAN	zinc finger protein 596	265	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(2;4.81e-29)|all_epithelial(2;5.03e-19)|Lung NSC(2;8.68e-08)|all_lung(2;1.52e-07)|Ovarian(12;0.00965)|Colorectal(14;0.0367)|all_neural(12;0.0837)|Myeloproliferative disorder(644;0.116)|all_hematologic(2;0.138)|Acute lymphoblastic leukemia(644;0.242)		Epithelial(5;3.77e-18)|all cancers(2;5.2e-17)|OV - Ovarian serous cystadenocarcinoma(5;5.37e-09)|BRCA - Breast invasive adenocarcinoma(11;1.7e-06)|Colorectal(2;6.51e-05)|READ - Rectum adenocarcinoma(2;0.0276)|COAD - Colon adenocarcinoma(149;0.0702)		AAAAGTTCTAACCTTAGACGA	0.408000													8	19					0	0	0.004482	0	0
DEFA6	1671	broad.mit.edu	37	8	6782349	6782349	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:6782349G>A	uc003wqt.2	-	2	335	c.294C>T	c.(292-294)TGC>TGT	p.C98C		NM_001926	NP_001917	Q01524	DEF6_HUMAN	defensin, alpha 6 preproprotein	98					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space					0			STAD - Stomach adenocarcinoma(24;0.0322)	COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		CTCAGAGGCAGCAGAATCTGT	0.413000													8	45					0	0	0.004482	0	0
SGK223	157285	broad.mit.edu	37	8	8235332	8235332	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:8235332G>A	uc003wsh.3	-	2	587	c.587C>T	c.(586-588)CCT>CTT	p.P196L		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	196							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GTCTTGGTAAGGAAATGAGGG	0.627000													14	48					0	0	0.003163	0	0
SGCZ	137868	broad.mit.edu	37	8	14095160	14095160	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:14095160C>T	uc003wwq.2	-	4	1025	c.365G>A	c.(364-366)AGG>AAG	p.R122K	SGCZ_uc010lss.2_Missense_Mutation_p.R75K	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	109	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		TGTGACATTCCTGTCAGACTG	0.383000													70	156					0	0	0.003610	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17063206	17063206	+	Silent	SNP	C	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:17063206C>A	uc003wxe.2	+	7	916	c.519C>A	c.(517-519)CTC>CTA	p.L173L		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	173	DHHC-type.|Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		AGTTCTTTCTCCTTTTCTTGG	0.328000													41	65					2.19358e-23	2.7886e-23	0.005524	1	0
MTMR7	9108	broad.mit.edu	37	8	17206493	17206493	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:17206493G>A	uc003wxm.2	-	5	805	c.566C>T	c.(565-567)CCT>CTT	p.P189L	MTMR7_uc003wxn.2_5'UTR	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	189	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		AGAAAGGACAGGAAATCGCCG	0.428000													16	38					0	0	0.006122	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24250842	24250842	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:24250842A>G	uc003xdz.2	+	3	495	c.275A>G	c.(274-276)CAA>CGA	p.Q92R	ADAMDEC1_uc010lub.2_Missense_Mutation_p.Q13R|ADAMDEC1_uc011lab.1_Missense_Mutation_p.Q13R	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	92					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		CTCTCCCTACAAAAAACCAAG	0.338000													8	32					0	0	0.004482	0	0
ADAM18	8749	broad.mit.edu	37	8	39467047	39467047	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:39467047C>T	uc003xni.2	+	5	311	c.311C>T	c.(310-312)TCA>TTA	p.S104L	ADAM18_uc003xnh.2_Missense_Mutation_p.S104L|ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.S104L	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	104					cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			TTTCCAAATTCATTTGTGACA	0.318000													30	22					0	0	0.003271	0	0
RP1	6101	broad.mit.edu	37	8	55540389	55540389	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:55540389C>T	uc003xsd.1	+	4	4095	c.3947C>T	c.(3946-3948)GCT>GTT	p.A1316V	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1316					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAGGCTTGTGCTCAAAAGGAG	0.413000													27	117					0	0	0.007291	0	0
HNF4G	3174	broad.mit.edu	37	8	76465345	76465345	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:76465345C>T	uc003yaq.2	+	6	687	c.417C>T	c.(415-417)GTC>GTT	p.V139V	HNF4G_uc003yar.2_Silent_p.V176V	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	139					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			TTGGTGATGTCTGTGAATCTA	0.363000													40	30					0	0	0.005524	0	0
CDH17	1015	broad.mit.edu	37	8	95186333	95186333	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:95186333C>T	uc003ygh.2	-	6	705	c.580G>A	c.(580-582)GAG>AAG	p.E194K	CDH17_uc011lgo.1_Intron|CDH17_uc011lgp.1_Missense_Mutation_p.E194K	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	194	Extracellular (Potential).|Cadherin 2.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			AACTTACCCTCTCGGGTAAGA	0.478000													63	97					0	0	0.003610	0	0
KIAA1429	25962	broad.mit.edu	37	8	95539167	95539167	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:95539167G>A	uc003ygo.1	-	8	1318	c.1305C>T	c.(1303-1305)ACC>ACT	p.T435T	KIAA1429_uc003ygp.2_Silent_p.T435T|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	435					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			AAGCTTGCATGGTCCAGTCTA	0.398000													56	55					0	0	0.003610	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813401	106813401	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:106813401G>A	uc003ymd.2	+	8	1114	c.1091G>A	c.(1090-1092)CGA>CAA	p.R364Q	ZFPM2_uc011lhs.1_Missense_Mutation_p.R95Q|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	364	C2H2-type 3.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GCTGCCTTCCGATGTAATCAC	0.507000													118	115					0	0	0.003610	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110451278	110451278	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:110451278G>A	uc003yne.2	+	32	4017	c.3913G>A	c.(3913-3915)GAT>AAT	p.D1305N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1305	Extracellular (Potential).|IPT/TIG 6.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGGAAAACATGATATCTATGT	0.403000										HNSCC(38;0.096)			105	98					0	0	0.003610	0	0
TRPS1	7227	broad.mit.edu	37	8	116599332	116599332	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:116599332G>A	uc003ynz.2	-	4	3016	c.2557C>T	c.(2557-2559)CTG>TTG	p.L853L	TRPS1_uc011lhy.1_Silent_p.L857L|TRPS1_uc003yny.2_Silent_p.L866L|TRPS1_uc010mcy.2_Silent_p.L853L	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	853					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			GCCCCCTGCAGGAATCCCTTG	0.577000									Langer-Giedion_syndrome				22	31					0	0	0.002780	0	0
NOV	4856	broad.mit.edu	37	8	120429133	120429133	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:120429133G>A	uc003yoq.2	+	2	455	c.234G>A	c.(232-234)CTG>CTA	p.L78L		NM_002514	NP_002505	P48745	NOV_HUMAN	nephroblastoma overexpressed precursor	78	IGFBP N-terminal.				regulation of cell growth		growth factor activity|insulin-like growth factor binding			ovary(2)|skin(2)|kidney(1)	5	all_cancers(13;3.84e-26)|Lung NSC(37;1.19e-08)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000507)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GCTCAGATCTGGAGCCATGCG	0.672000											OREG0018940	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	23					0	0	0.006320	0	0
ADCY8	114	broad.mit.edu	37	8	131795943	131795943	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:131795943G>A	uc003ytd.3	-	17	3518	c.3262C>T	c.(3262-3264)CGG>TGG	p.R1088W	ADCY8_uc010mds.2_Missense_Mutation_p.R957W	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	1088	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TCACCAATCCGGAGTTCAAAA	0.512000										HNSCC(32;0.087)			21	24					0	0	0.001882	0	0
EPPK1	83481	broad.mit.edu	37	8	144945716	144945717	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:144945716_144945717GG>AA	uc003zaa.1	-	1	1718_1719	c.1705_1706CC>TT	c.(1705-1707)CCA>TTA	p.P569L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	569	Plectin 10.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CAGCTCTCCTGGTGTCACGGTG	0.644000													4	21					0	0	0.004672	0	0
PPP1R16A	84988	broad.mit.edu	37	8	145726979	145726979	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr8:145726979G>T	uc003zdd.2	+	11	2193	c.1280G>T	c.(1279-1281)CGA>CTA	p.R427L	uc003zde.1_5'Flank|PPP1R16A_uc003zdf.2_Missense_Mutation_p.R427L|GPT_uc011lli.1_5'Flank|GPT_uc011llj.1_5'Flank|GPT_uc003zdh.3_5'Flank	NM_032902	NP_116291	Q96I34	PP16A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	427						plasma membrane	protein binding				0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			TACTCCAAGCGACTAGACCGG	0.647000													9	4					9.70103e-10	1.22089e-09	0.008291	1	0
KIAA2026	158358	broad.mit.edu	37	9	5924688	5924688	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:5924688C>T	uc003zjq.3	-	7	2872	c.2656G>A	c.(2656-2658)GAT>AAT	p.D886N	KIAA2026_uc010mht.2_Missense_Mutation_p.D61N	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	886										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TCCAGGATATCCAGAGGTTCT	0.383000													21	104					0	0	0.003330	0	0
IFNA1	3439	broad.mit.edu	37	9	21441071	21441071	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:21441071G>A	uc003zpd.1	+	1	632	c.565G>A	c.(565-567)GAA>AAA	p.E189K		NM_024013	NP_076918	P01562	IFNA1_HUMAN	interferon, alpha 1 precursor	189					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			ovary(2)	2				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)		AAGGAGGAAGGAATAACATCT	0.408000													45	85					0	0	0.003610	0	0
RECK	8434	broad.mit.edu	37	9	36105242	36105242	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:36105242C>T	uc003zyv.2	+	13	1624	c.1538C>T	c.(1537-1539)CCA>CTA	p.P513L	RECK_uc003zyw.2_Missense_Mutation_p.P385L|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	513						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			AAAGGATGTCCATCTGGAGAT	0.448000													37	55					0	0	0.008740	0	0
GRIN3A	116443	broad.mit.edu	37	9	104449345	104449345	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:104449345G>A	uc004bbp.1	-	2	1438	c.837C>T	c.(835-837)TTC>TTT	p.F279F	GRIN3A_uc004bbq.1_Silent_p.F279F	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	279	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	TAAGGAGGAGGAAGTCGGTGA	0.473000													57	57					0	0	0.003610	0	0
OR1B1	347169	broad.mit.edu	37	9	125391383	125391383	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:125391383G>A	uc011lyz.1	-	1	432	c.432C>T	c.(430-432)GCC>GCT	p.A144A		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	144	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTAGTAAGCAGGCACACCGTT	0.542000													9	14					0	0	0.006122	0	0
C9orf119	375757	broad.mit.edu	37	9	131038524	131038524	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:131038524C>T	uc004bup.2	+	1	100	c.100C>T	c.(100-102)CCT>TCT	p.P34S	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.P34S	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	34					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						GGCCGGCTTTCCTTGGGTGCG	0.682000													10	13					0	0	0.006214	0	0
COQ4	51117	broad.mit.edu	37	9	131094457	131094458	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:131094457_131094458CC>TT	uc004bur.3	+	5	775_776	c.428_429CC>TT	c.(427-429)CCC>CTT	p.P143L	COQ4_uc004bus.2_Missense_Mutation_p.P119L|COQ4_uc010mxy.2_Missense_Mutation_p.P119L	NM_016035	NP_057119	Q9Y3A0	COQ4_HUMAN	coenzyme Q4 homolog precursor	143					ubiquinone biosynthetic process	mitochondrial inner membrane					0						ACCCGAGCACCCACCCGCTTCG	0.599000													3	4					0	0	0.004672	0	0
C9orf96	169436	broad.mit.edu	37	9	136251455	136251455	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:136251455T>C	uc004cdk.2	+	4	335	c.274T>C	c.(274-276)TTC>CTC	p.F92L	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	92	Protein kinase.						ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CCAGGAGCTGTTCATCACGTG	0.617000													28	19					0	0	0.005443	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516048	138516048	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:138516048G>A	uc010nbd.1	-	5	980	c.726C>T	c.(724-726)TTC>TTT	p.F242F		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	242	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		ATTCTTTGATGAAGTCTAAAA	0.398000													38	53					0	0	0.007835	0	0
QSOX2	169714	broad.mit.edu	37	9	139100772	139100772	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:139100772G>A	uc010nbi.2	-	12	1937	c.1899C>T	c.(1897-1899)CTC>CTT	p.L633L		NM_181701	NP_859052	Q6ZRP7	QSOX2_HUMAN	quiescin Q6 sulfhydryl oxidase 2 precursor	633					cell redox homeostasis	extracellular region|integral to membrane|nuclear membrane|plasma membrane	thiol oxidase activity			ovary(1)	1		Myeloproliferative disorder(178;0.0511)		Epithelial(140;7.78e-08)|OV - Ovarian serous cystadenocarcinoma(145;1.55e-07)		CCAGACTCTGGAGTTTCCCGT	0.657000													28	29					0	0	0.008361	0	0
SEC16A	9919	broad.mit.edu	37	9	139370482	139370482	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr9:139370482C>T	uc004chx.2	-	3	1895	c.1586G>A	c.(1585-1587)AGC>AAC	p.S529N	SEC16A_uc004chv.3_Missense_Mutation_p.S156N|SEC16A_uc004chw.2_Missense_Mutation_p.S529N|SEC16A_uc010nbn.2_Missense_Mutation_p.S529N|SEC16A_uc010nbo.1_Missense_Mutation_p.S529N	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	351					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CCTTCCGTGGCTTCTGCTGCT	0.572000													21	21					0	0	0.004656	0	0
FAM47C	442444	broad.mit.edu	37	X	37028775	37028775	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:37028775G>A	uc004ddl.1	+	1	2306	c.2292G>A	c.(2290-2292)CCG>CCA	p.P764P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	764										ovary(3)	3						ATCTCCGCCCGGAGCCTCCTG	0.622000													21	15					0	0	0.001523	0	0
AKAP4	8852	broad.mit.edu	37	X	49957642	49957642	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:49957642G>A	uc004dow.1	-	5	1846	c.1722C>T	c.(1720-1722)ACC>ACT	p.T574T	AKAP4_uc004dov.1_Silent_p.T191T|AKAP4_uc010njp.1_Silent_p.T396T|AKAP4_uc004dou.1_Silent_p.T565T	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	574					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TATAGCCCATGGTGGAACCAG	0.483000													23	17					0	0	0.002299	0	0
SSX8	280659	broad.mit.edu	37	X	52659398	52659398	+	RNA	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:52659398G>A	uc011moa.1	+	7		c.895G>A			SSX8_uc011mob.1_RNA					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						AGAACGATGGGAAACAGCTGC	0.463000													77	51					0	0	0.003610	0	0
PHKA1	5255	broad.mit.edu	37	X	71822120	71822120	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:71822120C>T	uc004eax.3	-	27	3222	c.2921G>A	c.(2920-2922)CGT>CAT	p.R974H	PHKA1_uc004eay.3_Missense_Mutation_p.R974H|PHKA1_uc011mqi.1_Missense_Mutation_p.R915H	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	974					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					ATCAGTGGGACGAACTATGTA	0.363000													4	3					0	0	0.000248	0	0
TSIX	9383	broad.mit.edu	37	X	73040652	73040652	+	RNA	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:73040652C>T	uc004ebn.2	+	1		c.28613C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TTCTGCATTTCACATCAGTTC	0.363000													11	7					0	0	0.008291	0	0
XIST	7503	broad.mit.edu	37	X	73066030	73066030	+	RNA	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:73066030C>T	uc004ebm.1	-	1		c.6559G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GAAAAAGGGCCTTGGTGATCA	0.493000													27	27					0	0	0.008361	0	0
RGAG1	57529	broad.mit.edu	37	X	109694200	109694200	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:109694200C>T	uc004eor.1	+	3	601	c.355C>T	c.(355-357)CCA>TCA	p.P119S	RGAG1_uc011msr.1_Missense_Mutation_p.P119S	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	119										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ATTGCTAATGCCAGCCTTAGA	0.522000													44	40					0	0	0.002522	0	0
ODZ1	10178	broad.mit.edu	37	X	123805540	123805540	+	Silent	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:123805540C>T	uc004euj.2	-	6	1225	c.1161G>A	c.(1159-1161)GAG>GAA	p.E387E	ODZ1_uc011muj.1_Silent_p.E386E|ODZ1_uc010nqy.2_Silent_p.E387E	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	387	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TACCTTTTTTCTCTGATTTAT	0.378000													23	16					0	0	0.002299	0	0
IGSF1	3547	broad.mit.edu	37	X	130411868	130411868	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:130411868C>T	uc004ewd.2	-	13	2520	c.2282G>A	c.(2281-2283)TGG>TAG	p.W761*	IGSF1_uc004ewe.3_Nonsense_Mutation_p.W755*|IGSF1_uc004ewf.2_Nonsense_Mutation_p.W741*	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	761	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGGCTCAGACCACTTGAAGGG	0.532000													18	11					0	0	0.007413	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969259	140969259	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:140969259C>T	uc011mwp.1	+	4	586	c.586C>T	c.(586-588)CTC>TTC	p.L196F		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	196	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCAGTTTCTTCTCCTCAAATA	0.443000													34	39					0	0	0.004289	0	0
BGN	633	broad.mit.edu	37	X	152773823	152773823	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:152773823C>T	uc004fhr.1	+	8	1199	c.1027C>T	c.(1027-1029)CCC>TCC	p.P343S	BGN_uc004fhq.1_RNA	NM_001711	NP_001702	P21810	PGS1_HUMAN	biglycan preproprotein	343	LRR 12.					proteinaceous extracellular matrix|transport vesicle	extracellular matrix structural constituent			breast(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CAACCCCGTGCCCTACTGGGA	0.592000													38	37					0	0	0.004878	0	0
PLXNA3	55558	broad.mit.edu	37	X	153694361	153694361	+	Silent	SNP	G	A	A			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:153694361G>A	uc004flm.2	+	14	2789	c.2616G>A	c.(2614-2616)GTG>GTA	p.V872V		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	872	IPT/TIG 1.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCCGAGAGGTGGGCCTGCGGG	0.662000													13	8					0	0	0.001855	0	0
UPF2	26019	broad.mit.edu	37	10	11990430	11990432	+	In_Frame_Del	DEL	CTT	-	-			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr10:11990430_11990432delCTT	uc001ila.2	-	15	3584_3586	c.3110_3112delAAG	c.(3109-3114)GAAGGT>GGT	p.E1037del	UPF2_uc001ilb.2_In_Frame_Del_p.E1037del|UPF2_uc001ilc.2_In_Frame_Del_p.E1037del	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	1037	Glu-rich.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				tcagccccaccttcttcttcttc	0.167													9	605	---	---	---	---					
CDKL1	8814	broad.mit.edu	37	14	50824772	50824772	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr14:50824772delG	uc010anu.1	-	15	2196	c.2196delC	c.(2194-2196)CCCfs	p.P732fs	CDKL1_uc001wxz.2_Intron	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	Error:Variant_position_missing_in_Q00532_after_alignment						cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					ACTTCAGGAAGGGACCCCCTC	0.532													7	25	---	---	---	---					
ZNF155	7711	broad.mit.edu	37	19	44500692	44500711	+	Frame_Shift_Del	DEL	GAGAGAAACCATTCAAATGT	-	-	rs58537897	byFrequency	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr19:44500692_44500711delGAGAGAAACCATTCAAATGT	uc002oxy.1	+	5	888_907	c.683_702delGAGAGAAACCATTCAAATGT	c.(682-702)GGAGAGAAACCATTCAAATGTfs	p.G228fs	ZNF155_uc002oxz.1_Frame_Shift_Del_p.G228fs|ZNF155_uc010xwt.1_Frame_Shift_Del_p.G239fs	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	228_234	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				GTCCACACTGGAGAGAAACCATTCAAATGTGAGCAATGTG	0.436													26	98	---	---	---	---					
WBP1	23559	broad.mit.edu	37	2	74687550	74687550	+	Frame_Shift_Del	DEL	T	-	-	rs8469	byFrequency	TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr2:74687550delT	uc002slj.1	+	4	705	c.552delT	c.(550-552)CCTfs	p.P184fs	WBP1_uc002slh.1_RNA|INO80B_uc002sli.1_RNA|WBP1_uc002slk.1_Frame_Shift_Del_p.P181fs|WBP1_uc002sll.1_RNA	NM_012477	NP_036609	Q96G27	WBP1_HUMAN	WW domain binding protein 1	184							WW domain binding				0						GTGCCCCCCCTCATCAGGAGG	0.612													7	170	---	---	---	---					
ARMC8	25852	broad.mit.edu	37	3	137964016	137964016	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr3:137964016delC	uc003esa.1	+	13	1450	c.1083delC	c.(1081-1083)ATCfs	p.I361fs	ARMC8_uc003erw.2_Frame_Shift_Del_p.I361fs|ARMC8_uc003erx.2_Frame_Shift_Del_p.I361fs|ARMC8_uc003ery.2_Frame_Shift_Del_p.I333fs|ARMC8_uc003erz.2_Frame_Shift_Del_p.I333fs|ARMC8_uc011bmf.1_Frame_Shift_Del_p.I344fs|ARMC8_uc011bmg.1_Frame_Shift_Del_p.I308fs|ARMC8_uc011bmh.1_Frame_Shift_Del_p.I302fs|ARMC8_uc003esb.1_Frame_Shift_Del_p.I333fs|ARMC8_uc003esc.1_Frame_Shift_Del_p.I133fs	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	375	ARM 8.						binding				0						ATGAAGACATCCGGAAGAAGG	0.517													169	394	---	---	---	---					
RBAK	57786	broad.mit.edu	37	7	5104669	5104669	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chr7:5104669delG	uc010kss.1	+	6	1906	c.1582delG	c.(1582-1584)GGGfs	p.G528fs	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Frame_Shift_Del_p.G528fs	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	528	Interaction with AR.|C2H2-type 10; degenerate.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		AGCCTTCGATGGGCACCAGCC	0.383													27	59	---	---	---	---					
ERAS	3266	broad.mit.edu	37	X	48688189	48688189	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A2JA-06A-11D-A196-08	TCGA-D3-A2JA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f961ddcc-fb01-4ad1-974e-ccb2656a328e	a6cc66c4-23a1-43c8-9989-be2c10aa4f63	g.chrX:48688189delC	uc004dky.1	+	1	907	c.656delC	c.(655-657)ACCfs	p.T219fs		NM_181532	NP_853510	Q7Z444	RASE_HUMAN	ES cell expressed Ras precursor	219					small GTPase mediated signal transduction	intracellular|plasma membrane	GTP binding|GTPase activity			lung(4)|urinary_tract(1)	5						AGGGAGAAGACCCGGCACCAG	0.592													2	4	---	---	---	---					
